Pregenerated sensors for CYP2J9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015224Ensembl transcript IDs: ENSMUST00000055693.9
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAATGGGTGTCTCCCATGCAGATaGCATTTCTTCATACTTTCC | + |
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Preference number: 2 (lower is better) Translates to: LSLIARTLCHLNFTGSNGCLPCR*HFFILS Trigger: GGAAAGTATGAAGAAATGGCATCTGCATGGGAGACA...CCCATTTGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| 3UTR TCA 72 bp | CTCACAAGTGGCTTTCTACTTACTGAACCCATAACTTaGTTCAGTTTTCTTAGTCTCATTGCACGCACTCTC | + |
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Preference number: 3 (lower is better) Translates to: LTSGFLLTEPIT*FSFLSLIARTL Trigger: GAGAGTGCGTGCAATGAGACTAAGAAAACTGAATCAAGTTATGGGTTCAGTAAGTAGAAAGCCACTTGTGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR TCA 90 bp | TGGGAGCAGACACCAGTGTCTCCCATGCAGATGCCATTTCTTCATACTTTCCTCCACAAAGGCGGTGACTaGCTGGGGAAACGGTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: WEQTPVSPMQMPFLHTFLHKGGD*LGKRLQ Trigger: CTGCAACCGTTTCCCCAGTCAGTCACCGCCTTTGTG...GAGGAAAGTATGAAGAAATGGCATCTGCATGGGAGACACTGGTGTCTGCTCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR GCA 90 bp | TGGGAGCAGACACCAGTGTCTCCCATGCAGATGCCATTTCTTCATACTTTCCTCCAACTGGGTGTCAACTaGCACTTCCCTGGGAACGTT | + |
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Preference number: 4 (lower is better) Translates to: WEQTPVSPMQMPFLHTFLQLGVN*HFPGNV Trigger: AACGTTCCCAGGGAAGTGGCAGTTGACACCCAGTTG...GAGGAAAGTATGAAGAAATGGCATCTGCATGGGAGACACTGGTGTCTGCTCCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CCA 90 bp | TTTCTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAATAAGGCGCATTGGCCCTaGCGGGTAGTTCTTGGGGCG | + |
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Preference number: 4 (lower is better) Translates to: FLSLIARTLCHLNFTGSNKAHWP*RVVLGA Trigger: CGCCCCAAGAACTACCCGCCAGGGCCAATGCGCCTT...ATTTGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR TCA 90 bp | CTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAATGGGATTGCACAAAGGCGGTaGCTGACTGGGGAAACGGTT | + |
|
Preference number: 4 (lower is better) Translates to: LSLIARTLCHLNFTGSNGIAQRR*LTGETV Trigger: AACCGTTTCCCCAGTCAGTCACCGCCTTTGTGCAAT...CCCATTTGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR GCA 90 bp | CTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAATGGGGACTGGGGAAACGGTTaGAGCCATTCTGAACTGCAG | + |
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Preference number: 4 (lower is better) Translates to: LSLIARTLCHLNFTGSNGDWGNG*SHSELQ Trigger: CTGCAGTTCAGAATGGCTGCAACCGTTTCCCCAGTC...CCCATTTGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CCA 90 bp | TGGGAGCAGACACCAGTGTCTCCCATGCAGATGCCATTTCTTCATACTTTCCTCTTAAATCCAGCCAACTaGGTGTCAACTGCCACTTCC | + |
|
Preference number: 4 (lower is better) Translates to: WEQTPVSPMQMPFLHTFLLNPAN*VSTATS Trigger: GGAAGTGGCAGTTGACACCCAGTTGGCTGGATTTAA...GAGGAAAGTATGAAGAAATGGCATCTGCATGGGAGACACTGGTGTCTGCTCCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR TCA 90 bp | AGACACCAGTGTCTCCCATGCAGATGCCATTTCTTCATACTTTCCTCCTTCAACCCAGGAACAGAAAGGTaGCAGCAGACAGCAGCAAAA | + |
|
Preference number: 4 (lower is better) Translates to: RHQCLPCRCHFFILSSFNPGTER*QQTAAK Trigger: TTTTGCTGCTGTCTGCTGTCACCTTTCTGTTCCTGG...GTTGAAGGAGGAAAGTATGAAGAAATGGCATCTGCATGGGAGACACTGGTGTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CCA 90 bp | AGTTTTCTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAAGGCGGTGACTGACTaGGGAAACGGTTGCAGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: SFLSLIARTLCHLNFTGSKAVTD*GNGCSH Trigger: ATGGCTGCAACCGTTTCCCCAGTCAGTCACCGCCTT...TGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAGAAAACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR TCA 90 bp | CAGTTGAGAAGCTGTGTTATTGAGCTCACAAGTGGCTTTCTACTTACTGAACCCCGGTTGCAGCCATTCTaGACTGCAGACTTAGCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: QLRSCVIELTSGFLLTEPRLQPF*TADLAS Trigger: AGAAGCTAAGTCTGCAGTTCAGAATGGCTGCAACCG...GGGTTCAGTAAGTAGAAAGCCACTTGTGAGCTCAATAACACAGCTTCTCAACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR GCA 90 bp | CAGTTGAGAAGCTGTGTTATTGAGCTCACAAGTGGCTTTCTACTTACTGAACCCAGGGCAAACCTCCTTTaGTCCTTCCATGTCTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: QLRSCVIELTSGFLLTEPRANLL*SFHVWS Trigger: TGACCAGACATGGAAGGAGCAAAGGAGGTTTGCCCT...GGGTTCAGTAAGTAGAAAGCCACTTGTGAGCTCAATAACACAGCTTCTCAACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR GCA 90 bp | CAGTTGAGAAGCTGTGTTATTGAGCTCACAAGTGGCTTTCTACTTACTGAACCCTCGCTAGGATCCCTGTaGAGTGCAGTTAGGTTGGAA | + |
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Preference number: 4 (lower is better) Translates to: QLRSCVIELTSGFLLTEPSLGSL*SAVRLE Trigger: TTCCAACCTAACTGCACTGCACAGGGATCCTAGCGA...GGGTTCAGTAAGTAGAAAGCCACTTGTGAGCTCAATAACACAGCTTCTCAACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CCA 90 bp | AGACACCAGTGTCTCCCATGCAGATGCCATTTCTTCATACTTTCCTCCTTCAACTTTTTCTTGGACTTCTaGGTAGAGGGCCATGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: RHQCLPCRCHFFILSSFNFFLDF*VEGHAE Trigger: CTCTGCATGGCCCTCTACCCAGAAGTCCAAGAAAAA...GTTGAAGGAGGAAAGTATGAAGAAATGGCATCTGCATGGGAGACACTGGTGTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CCA 90 bp | CTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAATGGGTTCGGCTGTCTTGCTTaGCCAATCACTCTGTCAATC | + |
|
Preference number: 4 (lower is better) Translates to: LSLIARTLCHLNFTGSNGFGCLA*PITLSI Trigger: GATTGACAGAGTGATTGGCCAAGCAAGACAGCCGAA...CCCATTTGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR TCA 90 bp | TTTCTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAATTGGGGCGACGGTTTTTaGGGAAATCAGCCAGGAACA | + |
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Preference number: 4 (lower is better) Translates to: FLSLIARTLCHLNFTGSNWGDGF*GNQPGT Trigger: TGTTCCTGGCTGATTTCCTCAAAAACCGTCGCCCCA...ATTTGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR TCA 90 bp | AGACACCAGTGTCTCCCATGCAGATGCCATTTCTTCATACTTTCCTCCTTCAACTTGCTGATATTGAAGTaGGGGTCAAAAGGCTGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: RHQCLPCRCHFFILSSFNLLILK*GSKGCP Trigger: AGGACAGCCTTTTGACCCTCACTTCAATATCAGCAA...GTTGAAGGAGGAAAGTATGAAGAAATGGCATCTGCATGGGAGACACTGGTGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR GCA 90 bp | AGTTTTCTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCATCACAGCCTAGGAATTaGACAAAGGCGGTGACTGAC | + |
|
Preference number: 4 (lower is better) Translates to: SFLSLIARTLCHLNFTGSSQPRN*TKAVTD Trigger: GTCAGTCACCGCCTTTGTGCAATTCCTAGGCTGTGA...TGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAGAAAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CCA 90 bp | AGTTTTCTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCACTCCCTCATCTCTTATaGCCTCCACAAGGTAGTGAG | + |
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Preference number: 4 (lower is better) Translates to: SFLSLIARTLCHLNFTGSLPHLL*PPQGSE Trigger: CTCACTACCTTGTGGAGGCCATAAGAGATGAGGGAG...TGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAGAAAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR TCA 90 bp | CAGTTGAGAAGCTGTGTTATTGAGCTCACAAGTGGCTTTCTACTTACTGAACCCGAAAAGTGTCTGGTGTaGTCCAGGAAGATACTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: QLRSCVIELTSGFLLTEPEKCLV*SRKILK Trigger: CTTCAGTATCTTCCTGGATCACACCAGACACTTTTC...GGGTTCAGTAAGTAGAAAGCCACTTGTGAGCTCAATAACACAGCTTCTCAACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR TCA 90 bp | CTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAATGGGGTTTTCTCCAGTTTCTaGAAAGTGTCTGGTGTGATC | + |
|
Preference number: 4 (lower is better) Translates to: LSLIARTLCHLNFTGSNGVFSSF*KVSGVI Trigger: GATCACACCAGACACTTTTCAGAAACTGGAGAAAAC...CCCATTTGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR GCA 90 bp | TTTCTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAATATGTTGCCCATCCTCTaGACCTCATGGATGACAGCA | + |
|
Preference number: 4 (lower is better) Translates to: FLSLIARTLCHLNFTGSNMLPIL*TSWMTA Trigger: TGCTGTCATCCATGAGGTGCAGAGGATGGGCAACAT...ATTTGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CCA 90 bp | TTTCTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAATTGGATTGAATGTATCTaGGGTGGTCCACTCGCTAGG | + |
|
Preference number: 4 (lower is better) Translates to: FLSLIARTLCHLNFTGSNWIECI*GGPLAR Trigger: CCTAGCGAGTGGACCACCCCAGATACATTCAATCCA...ATTTGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR TCA 90 bp | AGTTTTCTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAGCACGTTTTCCCATTaGGAATGGCAGAAAGGATTC | + |
|
Preference number: 4 (lower is better) Translates to: SFLSLIARTLCHLNFTGSSTFSH*EWQKGF Trigger: GAATCCTTTCTGCCATTCTCAATGGGAAAACGTGCT...TGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAGAAAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR GCA 90 bp | CTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAATGGGCCATTCTCCAGAAAGTaGTCTGGATTGAATGTATCT | + |
|
Preference number: 4 (lower is better) Translates to: LSLIARTLCHLNFTGSNGPFSRK*SGLNVS Trigger: AGATACATTCAATCCAGAGCACTTTCTGGAGAATGG...CCCATTTGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CCA 90 bp | AGACACCAGTGTCTCCCATGCAGATGCCATTTCTTCATACTTTCCTCCTTCAACTGTAGTAGTCTTGTCTaGGTACTTTGTCATTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: RHQCLPCRCHFFILSSFNCSSLV*VLCHFC Trigger: ACAGAAATGACAAAGTACCCAGACAAGACTACTACA...GTTGAAGGAGGAAAGTATGAAGAAATGGCATCTGCATGGGAGACACTGGTGTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR TCA 90 bp | AGTTTTCTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAGATCCAGGAAGATACTaGAGTATCCTTGGAAAGATA | + |
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Preference number: 4 (lower is better) Translates to: SFLSLIARTLCHLNFTGSDPGRY*SILGKI Trigger: TATCTTTCCAAGGATACTTCAGTATCTTCCTGGATC...TGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAGAAAACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CCA 90 bp | TTTCTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAATTCCATGTCTGGTCACTaGAGAAGATCAATCCATTTT | + |
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Preference number: 4 (lower is better) Translates to: FLSLIARTLCHLNFTGSNSMSGH*RRSIHF Trigger: AAAATGGATTGATCTTCTCCAGTGACCAGACATGGA...ATTTGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CCA 90 bp | GTCCAAATGGAACAAGCAACCCACGAAAGGAAGGCGCATTGGCCCTaGCGGGTAGTTCTTGGGGCGACGGTTTTTGAGGAAATCAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: VQMEQATHERKAHWP*RVVLGATVFEEISQ Trigger: CTGGCTGATTTCCTCAAAAACCGTCGCCCCAAGAACTACCCGCCAGGGCCAATGCGCCTTCCTTTCGTGGGTTGCTTGTTCCATTTGGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CAA 90 bp | AGACACCAGTGTCTCCCATGCAGATGCCATTTCTTCATACTTTCCTCCTTCAACCGAAAGGAAGGCGCATaGGCCCTGGCGGGTAGTTCT | + |
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Preference number: 5 (lower is better) Translates to: RHQCLPCRCHFFILSSFNRKEGA*ALAGSS Trigger: AGAACTACCCGCCAGGGCCAATGCGCCTTCCTTTCG...GTTGAAGGAGGAAAGTATGAAGAAATGGCATCTGCATGGGAGACACTGGTGTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CAA 90 bp | TGGGAGCAGACACCAGTGTCTCCCATGCAGATGCCATTTCTTCATACTTTCCTCCAGGGCAAACCTCCTTaGCTCCTTCCATGTCTGGTC | + |
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Preference number: 5 (lower is better) Translates to: WEQTPVSPMQMPFLHTFLQGKPP*LLPCLV Trigger: GACCAGACATGGAAGGAGCAAAGGAGGTTTGCCCTG...GAGGAAAGTATGAAGAAATGGCATCTGCATGGGAGACACTGGTGTCTGCTCCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CAA 90 bp | CTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAATGGGCTCAGACCTGGCCAGTaGTTCTCCAAGACAAGCACG | + |
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Preference number: 5 (lower is better) Translates to: LSLIARTLCHLNFTGSNGLRPGQ*FSKTST Trigger: CGTGCTTGTCTTGGAGAACAACTGGCCAGGTCTGAG...CCCATTTGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS GCA 90 bp | CATAATACCCTTTGGCAAGTTAAATCCAGCCAACTGGGTGTCAACTaGCACTTCCCTGGGAACGTTAAAGGGGATGATGTTGCCCATCCT | + |
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Preference number: 5 (lower is better) Translates to: HNTLWQVKSSQLGVN*HFPGNVKGDDVAHP Trigger: AGGATGGGCAACATCATCCCCTTTAACGTTCCCAGGGAAGTGGCAGTTGACACCCAGTTGGCTGGATTTAACTTGCCAAAGGGTATTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS GCA 90 bp | TCTGGATTGAATGTATCTGGGGTGGTCCACTCGCTAGGATCCCTGTaGAGTGCAGTTAGGTTGGAAAGAACCATAATACCCTTTGGCAAG | + |
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Preference number: 5 (lower is better) Translates to: SGLNVSGVVHSLGSL*SAVRLERTIIPFGK Trigger: CTTGCCAAAGGGTATTATGGTTCTTTCCAACCTAACTGCACTGCACAGGGATCCTAGCGAGTGGACCACCCCAGATACATTCAATCCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CAA 90 bp | AGTTTTCTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAGATAGGTGGGGCTGCTaGGGGTCCAAATGGAACAAG | + |
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Preference number: 5 (lower is better) Translates to: SFLSLIARTLCHLNFTGSDRWGC*GSKWNK Trigger: CTTGTTCCATTTGGACCCCAAGCAGCCCCACCTATC...TGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAGAAAACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CAA 90 bp | AGACACCAGTGTCTCCCATGCAGATGCCATTTCTTCATACTTTCCTCCTTCAACTTAAAGGGGATGATGTaGCCCATCCTCTGCACCTCA | + |
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Preference number: 5 (lower is better) Translates to: RHQCLPCRCHFFILSSFNLKGMM*PILCTS Trigger: TGAGGTGCAGAGGATGGGCAACATCATCCCCTTTAA...GTTGAAGGAGGAAAGTATGAAGAAATGGCATCTGCATGGGAGACACTGGTGTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CCA 90 bp | TTGGAAAGAACCATAATACCCTTTGGCAAGTTAAATCCAGCCAACTaGGTGTCAACTGCCACTTCCCTGGGAACGTTAAAGGGGATGATG | + |
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Preference number: 5 (lower is better) Translates to: LERTIIPFGKLNPAN*VSTATSLGTLKGMM Trigger: CATCATCCCCTTTAACGTTCCCAGGGAAGTGGCAGTTGACACCCAGTTGGCTGGATTTAACTTGCCAAAGGGTATTATGGTTCTTTCCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CAA 90 bp | CTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAATGGGAGACTTAGCTTCTCATaGACTGGGGGCTTGAAGGTA | + |
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Preference number: 5 (lower is better) Translates to: LSLIARTLCHLNFTGSNGRLSFS*TGGLKV Trigger: TACCTTCAAGCCCCCAGTCAATGAGAAGCTAAGTCT...CCCATTTGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS GCA 90 bp | TTTCCTAGTCCAAAGTTCCTCAGTGTCATCAGGGCAAACCTCCTTTaGTCCTTCCATGTCTGGTCACTGGAGAAGATCAATCCATTTTTG | + |
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Preference number: 5 (lower is better) Translates to: FPSPKFLSVIRANLL*SFHVWSLEKINPFL Trigger: CAAAAATGGATTGATCTTCTCCAGTGACCAGACATGGAAGGAGCAAAGGAGGTTTGCCCTGATGACACTGAGGAACTTTGGACTAGGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CAA 90 bp | TTTCTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAATTTGGGGCGACGGTTTTaGAGGAAATCAGCCAGGAAC | + |
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Preference number: 5 (lower is better) Translates to: FLSLIARTLCHLNFTGSNLGRRF*RKSARN Trigger: GTTCCTGGCTGATTTCCTCAAAAACCGTCGCCCCAA...ATTTGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CAA 90 bp | CAGTTGAGAAGCTGTGTTATTGAGCTCACAAGTGGCTTTCTACTTACTGAACCCATTCGGCTGTCTTGCTaGGCCAATCACTCTGTCAAT | + |
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Preference number: 5 (lower is better) Translates to: QLRSCVIELTSGFLLTEPIRLSC*ANHSVN Trigger: ATTGACAGAGTGATTGGCCAAGCAAGACAGCCGAAT...GGGTTCAGTAAGTAGAAAGCCACTTGTGAGCTCAATAACACAGCTTCTCAACTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS TCA 90 bp | GCATCAATGAAGTCTCTCGGCTCATCTGGATCCCAGTCTCTCCGGTaGTTGTTAACAATATCGGAAACAAACAATTGCAGTTTTCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: ASMKSLGSSGSQSLR*LLTISETNNCSFLQ Trigger: CTGGAGAAAACTGCAATTGTTTGTTTCCGATATTGTTAACAATCACCGGAGAGACTGGGATCCAGATGAGCCGAGAGACTTCATTGATGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CCA 90 bp | TGTCATTTCTGTGAGGAAAGCATCAATGAAGTCTCTCGGCTCATCTaGATCCCAGTCTCTCCGGTGATTGTTAACAATATCGGAAACAAA | + |
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Preference number: 5 (lower is better) Translates to: CHFCEESINEVSRLI*IPVSPVIVNNIGNK Trigger: TTTGTTTCCGATATTGTTAACAATCACCGGAGAGACTGGGATCCAGATGAGCCGAGAGACTTCATTGATGCTTTCCTCACAGAAATGACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CAA 90 bp | CTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAATGGGTCATTGACTGGGGGCTaGAAGGTAAATTTTTGGAAA | + |
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Preference number: 5 (lower is better) Translates to: LSLIARTLCHLNFTGSNGSLTGG*KVNFWK Trigger: TTTCCAAAAATTTACCTTCAAGCCCCCAGTCAATGA...CCCATTTGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CCA 90 bp | TTCCTCAGTGTCATCAGGGCAAACCTCCTTTGCTCCTTCCATGTCTaGTCACTGGAGAAGATCAATCCATTTTTGTTAAAGAGATGTTTT | + |
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Preference number: 5 (lower is better) Translates to: FLSVIRANLLCSFHV*SLEKINPFLLKRCF Trigger: AAAACATCTCTTTAACAAAAATGGATTGATCTTCTCCAGTGACCAGACATGGAAGGAGCAAAGGAGGTTTGCCCTGATGACACTGAGGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CAA 90 bp | CTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAATGGGATCGGAAACAAACAATaGCAGTTTTCTCCAGTTTCT | + |
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Preference number: 5 (lower is better) Translates to: LSLIARTLCHLNFTGSNGIGNKQ*QFSPVS Trigger: AGAAACTGGAGAAAACTGCAATTGTTTGTTTCCGAT...CCCATTTGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CAA 90 bp | TTTCTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAATTGCAGTGCAGTTAGGTaGGAAAGAACCATAATACCC | + |
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Preference number: 5 (lower is better) Translates to: FLSLIARTLCHLNFTGSNCSAVR*ERTIIP Trigger: GGGTATTATGGTTCTTTCCAACCTAACTGCACTGCA...ATTTGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS TCA 90 bp | TTTCGGAGAAGAGTGACTGGGCGATTCATAAAATTGTGCTCCATTTaGGTAAAGATTTCTTTGATTAAGGGCATGCCAGTTATAACCACT | + |
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Preference number: 5 (lower is better) Translates to: FRRRVTGRFIKLCSI*VKISLIKGMPVITT Trigger: AGTGGTTATAACTGGCATGCCCTTAATCAAAGAAATCTTTACTCAAATGGAGCACAATTTTATGAATCGCCCAGTCACTCTTCTCCGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS-3UTR CAA 90 bp | TTTCTTAGTCTCATTGCACGCACTCTCTGTCACCTTAATTTTACCGGCTCAAATTTCTCTCTTCTTAAATaGTCCATTCTCCAGAAAGTG | + |
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Preference number: 5 (lower is better) Translates to: FLSLIARTLCHLNFTGSNFSLLK*SILQKV Trigger: CACTTTCTGGAGAATGGACAATTTAAGAAGAGAGAA...ATTTGAGCCGGTAAAATTAAGGTGACAGAGAGTGCGTGCAATGAGACTAAGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS TCA 90 bp | AACAAACAATTGCAGTTTTCTCCAGTTTCTGAAAAGTGTCTGGTGTaGTCCAGGAAGATACTGAAGTATCCTTGGAAAGATATTGTAAAG | + |
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Preference number: 5 (lower is better) Translates to: NKQLQFSPVSEKCLV*SRKILKYPWKDIVK Trigger: CTTTACAATATCTTTCCAAGGATACTTCAGTATCTTCCTGGATCACACCAGACACTTTTCAGAAACTGGAGAAAACTGCAATTGTTTGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CCA 72 bp | AGAAAGGTGACAGCAGACAGCAGCAAAATCCGGAGATaGAGCGCAGCCCAAATGGCAGCCACTAGGGAGCCG | + |
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Preference number: 6 (lower is better) Translates to: RKVTADSSKIRR*SAAQMAATREP Trigger: CGGCTCCCTAGTGGCTGCCATTTGGGCTGCGCTCCATCTCCGGATTTTGCTGCTGTCTGCTGTCACCTTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CCA 72 bp | GAACAAGCAACCCACGAAAGGAAGGCGCATTGGCCCTaGCGGGTAGTTCTTGGGGCGACGGTTTTTGAGGAA | + |
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Preference number: 6 (lower is better) Translates to: EQATHERKAHWP*RVVLGATVFEE Trigger: TTCCTCAAAAACCGTCGCCCCAAGAACTACCCGCCAGGGCCAATGCGCCTTCCTTTCGTGGGTTGCTTGTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CAA 72 bp | CCAAATGGAACAAGCAACCCACGAAAGGAAGGCGCATaGGCCCTGGCGGGTAGTTCTTGGGGCGACGGTTTT | + |
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Preference number: 6 (lower is better) Translates to: PNGTSNPRKEGA*ALAGSSWGDGF Trigger: AAAACCGTCGCCCCAAGAACTACCCGCCAGGGCCAATGCGCCTTCCTTTCGTGGGTTGCTTGTTCCATTTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS GCA 72 bp | GGGCATGGAGTCTCGGTCTGCCAGATTCGGCTGTCTTaGTTGGCCAATCACTCTGTCAATCTCAGCCTGCAT | + |
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Preference number: 6 (lower is better) Translates to: GHGVSVCQIRLS*LANHSVNLSLH Trigger: ATGCAGGCTGAGATTGACAGAGTGATTGGCCAAGCAAGACAGCCGAATCTGGCAGACCGAGACTCCATGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CCA 72 bp | CAAATGGAACAAGCAACCCACGAAAGGAAGGCGCATTaGCCCTGGCGGGTAGTTCTTGGGGCGACGGTTTTT | + |
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Preference number: 6 (lower is better) Translates to: QMEQATHERKAH*PWRVVLGATVF Trigger: AAAAACCGTCGCCCCAAGAACTACCCGCCAGGGCCAATGCGCCTTCCTTTCGTGGGTTGCTTGTTCCATTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS GCA 72 bp | GATGACAGCATTGGTGTAGGGCATGGAGTCTCGGTCTaGCAGATTCGGCTGTCTTGCTTGGCCAATCACTCT | + |
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Preference number: 6 (lower is better) Translates to: DDSIGVGHGVSV*QIRLSCLANHS Trigger: AGAGTGATTGGCCAAGCAAGACAGCCGAATCTGGCAGACCGAGACTCCATGCCCTACACCAATGCTGTCATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CCA 72 bp | TCCATTCTCCAGAAAGTGCTCTGGATTGAATGTATCTaGGGTGGTCCACTCGCTAGGATCCCTGTGCAGTGC | + |
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Preference number: 6 (lower is better) Translates to: SILQKVLWIECI*GGPLARIPVQC Trigger: GCACTGCACAGGGATCCTAGCGAGTGGACCACCCCAGATACATTCAATCCAGAGCACTTTCTGGAGAATGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CCA 72 bp | TCACAGCCTAGGAATTGCACAAAGGCGGTGACTGACTaGGGAAACGGTTGCAGCCATTCTGAACTGCAGACT | + |
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Preference number: 6 (lower is better) Translates to: SQPRNCTKAVTD*GNGCSHSELQT Trigger: AGTCTGCAGTTCAGAATGGCTGCAACCGTTTCCCCAGTCAGTCACCGCCTTTGTGCAATTCCTAGGCTGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CAA 72 bp | CATGGAGTCTCGGTCTGCCAGATTCGGCTGTCTTGCTaGGCCAATCACTCTGTCAATCTCAGCCTGCATTTT | + |
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Preference number: 6 (lower is better) Translates to: HGVSVCQIRLSC*ANHSVNLSLHF Trigger: AAAATGCAGGCTGAGATTGACAGAGTGATTGGCCAAGCAAGACAGCCGAATCTGGCAGACCGAGACTCCATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CAA 90 bp | TCTGGGGTGGTCCACTCGCTAGGATCCCTGTGCAGTGCAGTTAGGTaGGAAAGAACCATAATACCCTTTGGCAAGTTAAATCCAGCCAAC | + |
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Preference number: 6 (lower is better) Translates to: SGVVHSLGSLCSAVR*ERTIIPFGKLNPAN Trigger: GTTGGCTGGATTTAACTTGCCAAAGGGTATTATGGTTCTTTCCAACCTAACTGCACTGCACAGGGATCCTAGCGAGTGGACCACCCCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS TCA 72 bp | AGGCTTAGAACATTCCCGTATTTCTTCACAAACTGCTaGAGGGATAGGTGGGGCTGCTTGGGGTCCAAATGG | + |
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Preference number: 6 (lower is better) Translates to: RLRTFPYFFTNC*RDRWGCLGSKW Trigger: CCATTTGGACCCCAAGCAGCCCCACCTATCCCTTCAGCAGTTTGTGAAGAAATACGGGAATGTTCTAAGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CCA 72 bp | ATGGAGTCTCGGTCTGCCAGATTCGGCTGTCTTGCTTaGCCAATCACTCTGTCAATCTCAGCCTGCATTTTT | + |
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Preference number: 6 (lower is better) Translates to: MESRSARFGCLA*PITLSISACIF Trigger: AAAAATGCAGGCTGAGATTGACAGAGTGATTGGCCAAGCAAGACAGCCGAATCTGGCAGACCGAGACTCCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS GCA 72 bp | CCAAAGTTCCTCAGTGTCATCAGGGCAAACCTCCTTTaGTCCTTCCATGTCTGGTCACTGGAGAAGATCAAT | + |
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Preference number: 6 (lower is better) Translates to: PKFLSVIRANLL*SFHVWSLEKIN Trigger: ATTGATCTTCTCCAGTGACCAGACATGGAAGGAGCAAAGGAGGTTTGCCCTGATGACACTGAGGAACTTTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS GCA 72 bp | CTTTGGCAAGTTAAATCCAGCCAACTGGGTGTCAACTaGCACTTCCCTGGGAACGTTAAAGGGGATGATGTT | + |
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Preference number: 6 (lower is better) Translates to: LWQVKSSQLGVN*HFPGNVKGDDV Trigger: AACATCATCCCCTTTAACGTTCCCAGGGAAGTGGCAGTTGACACCCAGTTGGCTGGATTTAACTTGCCAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CAA 72 bp | TCCAAAGTTCCTCAGTGTCATCAGGGCAAACCTCCTTaGCTCCTTCCATGTCTGGTCACTGGAGAAGATCAA | + |
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Preference number: 6 (lower is better) Translates to: SKVPQCHQGKPP*LLPCLVTGEDQ Trigger: TTGATCTTCTCCAGTGACCAGACATGGAAGGAGCAAAGGAGGTTTGCCCTGATGACACTGAGGAACTTTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CCA 72 bp | TGTAAAGTTGGCACATCATTGATGACTCCAAACACATaGCCTCATCCAGTAGCCTCAGCATCTCCTGAAACT | + |
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Preference number: 6 (lower is better) Translates to: CKVGTSLMTPNT*PHPVASASPET Trigger: AGTTTCAGGAGATGCTGAGGCTACTGGATGAGGCCATGTGTTTGGAGTCATCAATGATGTGCCAACTTTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CAA 72 bp | GTCCACTCGCTAGGATCCCTGTGCAGTGCAGTTAGGTaGGAAAGAACCATAATACCCTTTGGCAAGTTAAAT | + |
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Preference number: 6 (lower is better) Translates to: VHSLGSLCSAVR*ERTIIPFGKLN Trigger: ATTTAACTTGCCAAAGGGTATTATGGTTCTTTCCAACCTAACTGCACTGCACAGGGATCCTAGCGAGTGGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS TCA 72 bp | AAGTCTCTCGGCTCATCTGGATCCCAGTCTCTCCGGTaGTTGTTAACAATATCGGAAACAAACAATTGCAGT | + |
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Preference number: 6 (lower is better) Translates to: KSLGSSGSQSLR*LLTISETNNCS Trigger: ACTGCAATTGTTTGTTTCCGATATTGTTAACAATCACCGGAGAGACTGGGATCCAGATGAGCCGAGAGACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CAA 72 bp | AAGAGGTCCAGAGTGCTGCAGATGAGGTTTTCTTCATaGAAACTTGTAGTAGTCTTGTCTGGGTACTTTGTC | + |
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Preference number: 6 (lower is better) Translates to: KRSRVLQMRFSS*KLVVVLSGYFV Trigger: GACAAAGTACCCAGACAAGACTACTACAAGTTTCAATGAAGAAAACCTCATCTGCAGCACTCTGGACCTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CAA 90 bp | CTTTGCTCCTTCCATGTCTGGTCACTGGAGAAGATCAATCCATTTTaGTTAAAGAGATGTTTTCGGAGAAGAGTGACTGGGCGATTCATA | + |
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Preference number: 6 (lower is better) Translates to: LCSFHVWSLEKINPF*LKRCFRRRVTGRFI Trigger: TATGAATCGCCCAGTCACTCTTCTCCGAAAACATCTCTTTAACAAAAATGGATTGATCTTCTCCAGTGACCAGACATGGAAGGAGCAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CAA 90 bp | GATACTGAAGTATCCTTGGAAAGATATTGTAAAGTTGGCACATCATaGATGACTCCAAACACATGGCCTCATCCAGTAGCCTCAGCATCT | + |
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Preference number: 6 (lower is better) Translates to: DTEVSLERYCKVGTS*MTPNTWPHPVASAS Trigger: AGATGCTGAGGCTACTGGATGAGGCCATGTGTTTGGAGTCATCAATGATGTGCCAACTTTACAATATCTTTCCAAGGATACTTCAGTATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CAA 72 bp | TTCCATGTCTGGTCACTGGAGAAGATCAATCCATTTTaGTTAAAGAGATGTTTTCGGAGAAGAGTGACTGGG | + |
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Preference number: 6 (lower is better) Translates to: FHVWSLEKINPF*LKRCFRRRVTG Trigger: CCCAGTCACTCTTCTCCGAAAACATCTCTTTAACAAAAATGGATTGATCTTCTCCAGTGACCAGACATGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS TCA 72 bp | TTGCAGTTTTCTCCAGTTTCTGAAAAGTGTCTGGTGTaGTCCAGGAAGATACTGAAGTATCCTTGGAAAGAT | + |
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Preference number: 6 (lower is better) Translates to: LQFSPVSEKCLV*SRKILKYPWKD Trigger: ATCTTTCCAAGGATACTTCAGTATCTTCCTGGATCACACCAGACACTTTTCAGAAACTGGAGAAAACTGCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CAA 72 bp | GTGTCTGGTGTGATCCAGGAAGATACTGAAGTATCCTaGGAAAGATATTGTAAAGTTGGCACATCATTGATG | + |
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Preference number: 6 (lower is better) Translates to: VSGVIQEDTEVS*ERYCKVGTSLM Trigger: CATCAATGATGTGCCAACTTTACAATATCTTTCCAAGGATACTTCAGTATCTTCCTGGATCACACCAGACAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS TCA 72 bp | AGAGTGACTGGGCGATTCATAAAATTGTGCTCCATTTaGGTAAAGATTTCTTTGATTAAGGGCATGCCAGTT | + |
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Preference number: 6 (lower is better) Translates to: RVTGRFIKLCSI*VKISLIKGMPV Trigger: AACTGGCATGCCCTTAATCAAAGAAATCTTTACTCAAATGGAGCACAATTTTATGAATCGCCCAGTCACTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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| CDS CCA 72 bp | GAGGTTTTCTTCATTGAAACTTGTAGTAGTCTTGTCTaGGTACTTTGTCATTTCTGTGAGGAAAGCATCAAT | + |
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Preference number: 6 (lower is better) Translates to: EVFFIETCSSLV*VLCHFCEESIN Trigger: ATTGATGCTTTCCTCACAGAAATGACAAAGTACCCAGACAAGACTACTACAAGTTTCAATGAAGAAAACCTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055693.9 |
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