Pregenerated sensors for CYP2C55 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025002Ensembl transcript IDs: ENSMUST00000025966.5
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CAGTTAATAACTCCTTTTACTTTGAGTCAAGCAAAGCATAGATGGCTCTCAGTTATGGAGACTGCTCCCTaGGAAGTCAGAGATACCAGC | + |
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Preference number: 2 (lower is better) Translates to: QLITPFTLSQAKHRWLSVMETAP*EVRDTS Trigger: GCTGGTATCTCTGACTTCTCAGGGAGCAGTCTCCAT...AACTGAGAGCCATCTATGCTTTGCTTGACTCAAAGTAAAAGGAGTTATTAACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| 3UTR-3UTR TCA 90 bp | ATAACTCCTTTTACTTTGAGTCAAGCAAAGCATAGATGGCTCTCAGTTGACCTCGATGTCCCTAATAGTTaGCAGGATATGGAGACTGCT | + |
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Preference number: 2 (lower is better) Translates to: ITPFTLSQAKHRWLSVDLDVPNS*QDMETA Trigger: AGCAGTCTCCATATCCTGTCAACTATTAGGGACATC...GAGGTCAACTGAGAGCCATCTATGCTTTGCTTGACTCAAAGTAAAAGGAGTTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| 3UTR-3UTR TCA 90 bp | CAGTTAATAACTCCTTTTACTTTGAGTCAAGCAAAGCATAGATGGCTCTCAGTTATAAGTGTTGTAGACTaGAGAGGACAGAGGATGGAT | + |
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Preference number: 2 (lower is better) Translates to: QLITPFTLSQAKHRWLSVISVVD*RGQRMD Trigger: ATCCATCCTCTGTCCTCTTCAGTCTACAACACTTAT...AACTGAGAGCCATCTATGCTTTGCTTGACTCAAAGTAAAAGGAGTTATTAACTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| 3UTR-3UTR CCA 90 bp | CAGTTAATAACTCCTTTTACTTTGAGTCAAGCAAAGCATAGATGGCTCTCAGTTCTTCTTAAACAAAGATaGATGATGACTGGATTGTGG | + |
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Preference number: 2 (lower is better) Translates to: QLITPFTLSQAKHRWLSVLLKQR*MMTGLW Trigger: CCACAATCCAGTCATCATCCATCTTTGTTTAAGAAG...AACTGAGAGCCATCTATGCTTTGCTTGACTCAAAGTAAAAGGAGTTATTAACTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| 3UTR-3UTR CAA 90 bp | CCTTTTACTTTGAGTCAAGCAAAGCATAGATGGCTCTCAGTTGACCTCGTCTGTTGGATGATGACTGGATaGTGGGAGAATGAAAAGATG | + |
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Preference number: 3 (lower is better) Translates to: PFTLSQAKHRWLSVDLVCWMMTG*WENEKM Trigger: CATCTTTTCATTCTCCCACAATCCAGTCATCATCCA...ACAGACGAGGTCAACTGAGAGCCATCTATGCTTTGCTTGACTCAAAGTAAAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| 3UTR TCA 72 bp | ACATGTCTTAGTACTGTCGATATAAGTGTTGTAGACTaGAGAGGACAGAGGATGGATCTGCATGGTAACTCT | + |
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Preference number: 3 (lower is better) Translates to: TCLSTVDISVVD*RGQRMDLHGNS Trigger: AGAGTTACCATGCAGATCCATCCTCTGTCCTCTTCAGTCTACAACACTTATATCGACAGTACTAAGACATGT 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| 3UTR CCA 72 bp | ATAACTCCTTTTACTTTGAGTCAAGCAAAGCATAGATaGCTCTCAGTTGACCTCGTCTGTATTACACTTTTA | + |
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Preference number: 3 (lower is better) Translates to: ITPFTLSQAKHR*LSVDLVCITLL Trigger: TAAAAGTGTAATACAGACGAGGTCAACTGAGAGCCATCTATGCTTTGCTTGACTCAAAGTAAAAGGAGTTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| CDS-3UTR GCA 90 bp | CCTTTTACTTTGAGTCAAGCAAAGCATAGATGGCTCTCAGTTGACCTCGTCTGTATGCGGGTTCTGTCCTaGATGCAGGGGCTCCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: PFTLSQAKHRWLSVDLVCMRVLS*MQGLLC Trigger: ACACAGGAGCCCCTGCATGCAGGACAGAACCCGCAT...ACAGACGAGGTCAACTGAGAGCCATCTATGCTTTGCTTGACTCAAAGTAAAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| CDS-3UTR TCA 90 bp | GATGTGAGAGGAGTAGTGAGAGAGATGTCCCTAATAGTTGACAGGATATGGAGACCTCAAGGTCATGATTaGGAAGCGCCGAAGCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: DVRGVVREMSLIVDRIWRPQGHD*EAPKLL Trigger: AAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGG...TCTCCATATCCTGTCAACTATTAGGGACATCTCTCTCACTACTCCTCTCACATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| CDS-3UTR GCA 90 bp | CCTTTTACTTTGAGTCAAGCAAAGCATAGATGGCTCTCAGTTGACCTCGTCTGTCACGTGATCGATCTCTaGCTGGACTTTAGCTGTGAC | + |
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Preference number: 4 (lower is better) Translates to: PFTLSQAKHRWLSVDLVCHVIDL*LDFSCD Trigger: GTCACAGCTAAAGTCCAGGCAGAGATCGATCACGTG...ACAGACGAGGTCAACTGAGAGCCATCTATGCTTTGCTTGACTCAAAGTAAAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| CDS-3UTR CCA 90 bp | TACTGTCGATATAAGTGTTGTAGACTGAAGAGGACAGAGGATGGATCTGCATGGTTACAGGTAGCTGCATaGGGCACATTGTTGGGGATG | + |
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Preference number: 4 (lower is better) Translates to: YCRYKCCRLKRTEDGSAWLQVAA*GTLLGM Trigger: CATCCCCAACAATGTGCCCCATGCAGCTACCTGTAA...CCATGCAGATCCATCCTCTGTCCTCTTCAGTCTACAACACTTATATCGACAGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| CDS-3UTR GCA 90 bp | ATAACTCCTTTTACTTTGAGTCAAGCAAAGCATAGATGGCTCTCAGTTGACCTCAGGGGCTCCTGTGTCTaGCAATCACGTGATCGATCT | + |
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Preference number: 4 (lower is better) Translates to: ITPFTLSQAKHRWLSVDLRGSCV*QSRDRS Trigger: AGATCGATCACGTGATTGGCAGACACAGGAGCCCCT...GAGGTCAACTGAGAGCCATCTATGCTTTGCTTGACTCAAAGTAAAAGGAGTTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| CDS-3UTR CCA 90 bp | TACTGTCGATATAAGTGTTGTAGACTGAAGAGGACAGAGGATGGATCTGCATGGGGAATGAAGTACAGCTaGTATGAAGGTGGTACACGG | + |
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Preference number: 4 (lower is better) Translates to: YCRYKCCRLKRTEDGSAWGMKYS*YEGGTR Trigger: CCGTGTACCACCTTCATACCAGCTGTACTTCATTCC...CCATGCAGATCCATCCTCTGTCCTCTTCAGTCTACAACACTTATATCGACAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| CDS-3UTR TCA 90 bp | GATGTGAGAGGAGTAGTGAGAGAGATGTCCCTAATAGTTGACAGGATATGGAGAGGGGCCATAGACTTTTaGGAAATAGTTGAAGGATTT | + |
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Preference number: 4 (lower is better) Translates to: DVRGVVREMSLIVDRIWRGAIDF*EIVEGF Trigger: AAATCCTTCAACTATTTCTCAAAAGTCTATGGCCCC...TCTCCATATCCTGTCAACTATTAGGGACATCTCTCTCACTACTCCTCTCACATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| CDS-3UTR CCA 90 bp | TTAATAACTCCTTTTACTTTGAGTCAAGCAAAGCATAGATGGCTCTCAGTTGACATGTCCAGTGTTTCCTaGTGTTCTTTCACTCGCCCC | + |
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Preference number: 4 (lower is better) Translates to: LITPFTLSQAKHRWLSVDMSSVS*CSFTRP Trigger: GGGGCGAGTGAAAGAACACCAGGAAACACTGGACAT...GTCAACTGAGAGCCATCTATGCTTTGCTTGACTCAAAGTAAAAGGAGTTATTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| CDS-3UTR TCA 90 bp | CAGTTAATAACTCCTTTTACTTTGAGTCAAGCAAAGCATAGATGGCTCTCAGTTCACCACAGTAGGCTTTaGACCAAAGTACAGAGTGAA | + |
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Preference number: 4 (lower is better) Translates to: QLITPFTLSQAKHRWLSVHHSRL*TKVQSE Trigger: TTCACTCTGTACTTTGGTTCAAAGCCTACTGTGGTG...AACTGAGAGCCATCTATGCTTTGCTTGACTCAAAGTAAAAGGAGTTATTAACTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| CDS-3UTR GCA 90 bp | CAGTTAATAACTCCTTTTACTTTGAGTCAAGCAAAGCATAGATGGCTCTCAGTTTTCCACAAGACAGGATaGTTCCTCTTGAATGCGATC | + |
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Preference number: 4 (lower is better) Translates to: QLITPFTLSQAKHRWLSVFHKTG*FLLNAI Trigger: GATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAA...AACTGAGAGCCATCTATGCTTTGCTTGACTCAAAGTAAAAGGAGTTATTAACTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| CDS-3UTR CCA 90 bp | ATAACTCCTTTTACTTTGAGTCAAGCAAAGCATAGATGGCTCTCAGTTGACCTCATAGTAAACTCCGAATaGGGATTGTGTTTTTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: ITPFTLSQAKHRWLSVDLIVNSE*GLCFSC Trigger: ACAGGAAAAACACAATCCCCATTCGGAGTTTACTAT...GAGGTCAACTGAGAGCCATCTATGCTTTGCTTGACTCAAAGTAAAAGGAGTTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| CDS-3UTR TCA 90 bp | TTAATAACTCCTTTTACTTTGAGTCAAGCAAAGCATAGATGGCTCTCAGTTGACCATTCGCTTTCCTATTaGGAAAGGCATAAAGTAGTC | + |
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Preference number: 4 (lower is better) Translates to: LITPFTLSQAKHRWLSVDHSLSY*ERHKVV Trigger: GACTACTTTATGCCTTTCTCAATAGGAAAGCGAATG...GTCAACTGAGAGCCATCTATGCTTTGCTTGACTCAAAGTAAAAGGAGTTATTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| CDS-3UTR CAA 90 bp | TTAATAACTCCTTTTACTTTGAGTCAAGCAAAGCATAGATGGCTCTCAGTTGACACAGGATGCTTCCTCTaGAATGCGATCCTCGATGCT | + |
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Preference number: 5 (lower is better) Translates to: LITPFTLSQAKHRWLSVDTGCFL*NAILDA Trigger: AGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGT...GTCAACTGAGAGCCATCTATGCTTTGCTTGACTCAAAGTAAAAGGAGTTATTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| CDS-3UTR CAA 90 bp | ATAACTCCTTTTACTTTGAGTCAAGCAAAGCATAGATGGCTCTCAGTTGACCTCAACTCCGAATGGGGATaGTGTTTTTCCTGTTCCATT | + |
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Preference number: 5 (lower is better) Translates to: ITPFTLSQAKHRWLSVDLNSEWG*CFSCSI Trigger: AATGGAACAGGAAAAACACAATCCCCATTCGGAGTT...GAGGTCAACTGAGAGCCATCTATGCTTTGCTTGACTCAAAGTAAAAGGAGTTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| CDS-3UTR CAA 90 bp | CAGTTAATAACTCCTTTTACTTTGAGTCAAGCAAAGCATAGATGGCTCTCAGTTCACAGAGTGAACCATTaGCTTTTCTTAGCTCTTCCA | + |
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Preference number: 5 (lower is better) Translates to: QLITPFTLSQAKHRWLSVHRVNH*LFLALP Trigger: TGGAAGAGCTAAGAAAAGCAAATGGTTCACTCTGTG...AACTGAGAGCCATCTATGCTTTGCTTGACTCAAAGTAAAAGGAGTTATTAACTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| CDS CAA 72 bp | TACAGCTGGTATGAAGGTGGTACACGGCCAAAAGTATaGGCCACTGGAGTAGTGTCAATGTCCTTTGTATCA | + |
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Preference number: 6 (lower is better) Translates to: YSWYEGGTRPKV*ATGVVSMSFVS Trigger: TGATACAAAGGACATTGACACTACTCCAGTGGCCAATACTTTTGGCCGTGTACCACCTTCATACCAGCTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| CDS CCA 72 bp | GATGAGGGTAGGCAGAGCATTGTAGACCTGCATCCATaGGGAGTTCAAGATTTTAAAGTTTTCATTGAGTCT | + |
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Preference number: 6 (lower is better) Translates to: DEGRQSIVDLHP*GVQDFKVFIES Trigger: AGACTCAATGAAAACTTTAAAATCTTGAACTCCCCATGGATGCAGGTCTACAATGCTCTGCCTACCCTCATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| CDS TCA 72 bp | AGAAGCGCCGAAGCTCCTTCCATTTTGTTCCATTGCTaGAAATCACCCCCAGATCATTATTTATTCTTTCAA | + |
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Preference number: 6 (lower is better) Translates to: RSAEAPSILFHC*KSPPDHYLFFQ Trigger: TTGAAAGAATAAATAATGATCTGGGGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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| CDS CCA 72 bp | TTCAGTAAAATTTTTAATTACTTTGTTATGACTCCCTaGGAGATAATTGATGAGGGTAGGCAGAGCATTGTA | + |
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Preference number: 6 (lower is better) Translates to: FSKIFNYFVMTP*EIIDEGRQSIV Trigger: TACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025966.5 |
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