Pregenerated sensors for CYP2C40 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025004Ensembl transcript IDs: ENSMUST00000160476.9, ENSMUST00000162507.2, ENSMUST00000162630.3, ENSMUST00000239028.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGGGATAAGAAGGAATATAGATGGAATTTCTGGGACTGGGTTAAATaGGGGCTTCCGTGGGTGATTGAGAAAAACAGCATAGCAGAAGCT | + |
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Preference number: 1 (lower is better) Translates to: WDKKEYRWNFWDWVK*GLPWVIEKNSIAEA Trigger: AGCTTCTGCTATGCTGTTTTTCTCAATCACCCACGGAAGCCCTCATTTAACCCAGTCCCAGAAATTCCATCTATATTCCTTCTTATCCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000160476.9 ENSMUST00000239028.2 |
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| 3UTR CCA 90 bp | TCCCACCAAAAACCAGATCAGTCACCAATGTTGCCAGGTGTTCAATaGTATAGTCCATGTGCTCAATGCCATTTTTCTGACGTCTTTGAA | + |
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Preference number: 1 (lower is better) Translates to: SHQKPDQSPMLPGVQ*YSPCAQCHFSDVFE Trigger: TTCAAAGACGTCAGAAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| 3UTR-3UTR GCA 90 bp | TGGGGAACTCCGTGCTGTCATGCAGCACTGATGTCAGTGATGTCATTACCTGTGCCTGCATACAGGGGCTaGGGTGTCTCCCAATCACAT | + |
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Preference number: 2 (lower is better) Translates to: WGTPCCHAALMSVMSLPVPAYRG*GVSQSH Trigger: ATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGG...CACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| 3UTR-3UTR GCA 90 bp | TGGGGAACTCCGTGCTGTCATGCAGCACTGATGTCAGTGATGTCATTACCTGTGATGTGGTTCCTGTCCTaGATACAGGGGCTGCGGTGT | + |
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Preference number: 2 (lower is better) Translates to: WGTPCCHAALMSVMSLPVMWFLS*IQGLRC Trigger: ACACCGCAGCCCCTGTATGCAGGACAGGAACCACAT...CACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| 3UTR-3UTR GCA 90 bp | AGAAAATCCAGAATGTTTGGGGGTCATATCGATGTCCTTTGGATCAACCAGAGGTCACAGGTTACTTCATaGACCACACCATTTGGGCCA | + |
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Preference number: 2 (lower is better) Translates to: RKSRMFGGHIDVLWINQRSQVTS*TTPFGP Trigger: TGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGA...CCTCTGGTTGATCCAAAGGACATCGATATGACCCCCAAACATTCTGGATTTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| 3UTR CAA 90 bp | AGCTTAAGGTCTCTGTCCCACCAAAAACCAGATCAGTCACCAATGTaGCCAGGTGTTCAATGGTATAGTCCATGTGCTCAATGCCATTTT | + |
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Preference number: 2 (lower is better) Translates to: SLRSLSHQKPDQSPM*PGVQWYSPCAQCHF Trigger: AAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| 3UTR-3UTR GCA 90 bp | AGAAAATCCAGAATGTTTGGGGGTCATATCGATGTCCTTTGGATCAACCAGAGGAGTCCATGTGCTCAATaGCATTTTTCTGACGTCTTT | + |
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Preference number: 2 (lower is better) Translates to: RKSRMFGGHIDVLWINQRSPCAQ*HFSDVF Trigger: AAAGACGTCAGAAAAATGGCATTGAGCACATGGACT...CCTCTGGTTGATCCAAAGGACATCGATATGACCCCCAAACATTCTGGATTTTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| 3UTR-3UTR GCA 90 bp | CTATTTTATCATCTTCATTCCACAGGGATAAAGCACATCTGGAAATTGGGAGGAGCTGTGATGTGTGTGTaGTTCATCAAGAGCAGGAGA | + |
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Preference number: 2 (lower is better) Translates to: LFYHLHSTGIKHIWKLGGAVMCV*FIKSRR Trigger: TCTCCTGCTCTTGATGAAGCACACACACATCACAGC...TCCTCCCAATTTCCAGATGTGCTTTATCCCTGTGGAATGAAGATGATAAAATAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| 3UTR-3UTR CCA 90 bp | AGAAAATCCAGAATGTTTGGGGGTCATATCGATGTCCTTTGGATCAACCAGAGGTTGTCAATCTCTTCCTaGACTTTAGCTGTGATGTGT | + |
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Preference number: 2 (lower is better) Translates to: RKSRMFGGHIDVLWINQRLSISS*TLAVMC Trigger: ACACATCACAGCTAAAGTCCAGGAAGAGATTGACAA...CCTCTGGTTGATCCAAAGGACATCGATATGACCCCCAAACATTCTGGATTTTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| 3UTR-3UTR CAA 90 bp | TGGGGAACTCCGTGCTGTCATGCAGCACTGATGTCAGTGATGTCATTACCTGTGCATGCACCACACCATTaGGGCCAAGGTCAATGTACC | + |
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Preference number: 3 (lower is better) Translates to: WGTPCCHAALMSVMSLPVHAPHH*GQGQCT Trigger: GGTACATTGACCTTGGCCCAAATGGTGTGGTGCATG...CACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| 3UTR CCA 72 bp | CTTAGTGTCACAGGTTACTTCATGCACCACACCATTTaGGCCAAGGTCAATGTACCGCTGGACCTCATGCAC | + |
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Preference number: 3 (lower is better) Translates to: LSVTGYFMHHTI*AKVNVPLDLMH Trigger: GTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| 3UTR GCA 72 bp | CTCTGTCCCACCAAAAACCAGATCAGTCACCAATGTTaGCAGGTGTTCAATGGTATAGTCCATGTGCTCAAT | + |
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Preference number: 3 (lower is better) Translates to: LCPTKNQISHQC*QVFNGIVHVLN Trigger: ATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| 3UTR CCA 72 bp | AAACCAGATCAGTCACCAATGTTGCCAGGTGTTCAATaGTATAGTCCATGTGCTCAATGCCATTTTTCTGAC | + |
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Preference number: 3 (lower is better) Translates to: KPDQSPMLPGVQ*YSPCAQCHFSD Trigger: GTCAGAAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| 3UTR CAA 72 bp | TCTCTGTCCCACCAAAAACCAGATCAGTCACCAATGTaGCCAGGTGTTCAATGGTATAGTCCATGTGCTCAA | + |
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Preference number: 4 (lower is better) Translates to: SLSHQKPDQSPM*PGVQWYSPCAQ Trigger: TTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| CDS-3UTR GCA 90 bp | ACAGAAGCTGGGATAAGAAGGAATATAGATGGAATTTCTGGGACTGGGTTAAATAGGGAGGTTCCCTCTTaGAGATCTCTGTCTCCACAA | + |
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Preference number: 4 (lower is better) Translates to: TEAGIRRNIDGISGTGLNREVPS*RSLSPQ Trigger: TTGTGGAGACAGAGATCTGCAAGAGGGAACCTCCCT...ATTTAACCCAGTCCCAGAAATTCCATCTATATTCCTTCTTATCCCAGCTTCTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160476.9 ENSMUST00000239028.2 |
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| CDS-3UTR GCA 90 bp | TTGTTGAGCAAATTTCTGACACCCAGGAGAGCTCAAAATTTCAGTGCATTCATTAGGGAGGTTCCCTCTTaGAGATCTCTGTCTCCACAA | + |
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Preference number: 4 (lower is better) Translates to: LLSKFLTPRRAQNFSAFIREVPS*RSLSPQ Trigger: TTGTGGAGACAGAGATCTGCAAGAGGGAACCTCCCT...AATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAGAAATTTGCTCAACAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| CDS-3UTR GCA 90 bp | ACAGAAGCTGGGATAAGAAGGAATATAGATGGAATTTCTGGGACTGGGTTAAATCACTGTGCTTCCTCTTaGACTTTGTTCTCAATGGTC | + |
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Preference number: 4 (lower is better) Translates to: TEAGIRRNIDGISGTGLNHCASS*TLFSMV Trigger: GACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTG...ATTTAACCCAGTCCCAGAAATTCCATCTATATTCCTTCTTATCCCAGCTTCTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160476.9 ENSMUST00000239028.2 |
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| CDS-3UTR GCA 90 bp | ACAGAAGCTGGGATAAGAAGGAATATAGATGGAATTTCTGGGACTGGGTTAAATCTTCATGAGCCACTGTaGTTCCTCTTGCACTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: TEAGIRRNIDGISGTGLNLHEPL*FLLHFV Trigger: AACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAG...ATTTAACCCAGTCCCAGAAATTCCATCTATATTCCTTCTTATCCCAGCTTCTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160476.9 ENSMUST00000239028.2 |
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| CDS-3UTR GCA 90 bp | CTATTTTATCATCTTCATTCCACAGGGATAAAGCACATCTGGAAATTGGGAGGACTTCATGAGCCACTGTaGTTCCTCTTGCACTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: LFYHLHSTGIKHIWKLGGLHEPL*FLLHFV Trigger: AACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAG...TCCTCCCAATTTCCAGATGTGCTTTATCCCTGTGGAATGAAGATGATAAAATAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| CDS-3UTR CCA 90 bp | ACAGAAGCTGGGATAAGAAGGAATATAGATGGAATTTCTGGGACTGGGTTAAATCACCAAGACTACAAATaGATCCATGGAGACCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: TEAGIRRNIDGISGTGLNHQDYK*IHGDPS Trigger: AGAAGGGTCTCCATGGATCCATTTGTAGTCTTGGTG...ATTTAACCCAGTCCCAGAAATTCCATCTATATTCCTTCTTATCCCAGCTTCTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239028.2 |
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| CDS-3UTR CCA 90 bp | ACAGAAGCTGGGATAAGAAGGAATATAGATGGAATTTCTGGGACTGGGTTAAATGAGAACTCTTCTCCATaGTCAATGAGGGCTTCTTTA | + |
|
Preference number: 4 (lower is better) Translates to: TEAGIRRNIDGISGTGLNENSSP*SMRASL Trigger: TAAAGAAGCCCTCATTGACCATGGAGAAGAGTTCTC...ATTTAACCCAGTCCCAGAAATTCCATCTATATTCCTTCTTATCCCAGCTTCTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160476.9 ENSMUST00000239028.2 |
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| CDS-3UTR CCA 90 bp | TTGTTGAGCAAATTTCTGACACCCAGGAGAGCTCAAAATTTCAGTGCATTCATTGAGAACTCTTCTCCATaGTCAATGAGGGCTTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: LLSKFLTPRRAQNFSAFIENSSP*SMRASL Trigger: TAAAGAAGCCCTCATTGACCATGGAGAAGAGTTCTC...AATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAGAAATTTGCTCAACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| CDS-3UTR GCA 90 bp | ACAGAAGCTGGGATAAGAAGGAATATAGATGGAATTTCTGGGACTGGGTTAAATAAATTGGTAAGGCACTaGCCAATGTCCTTCATATCT | + |
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Preference number: 4 (lower is better) Translates to: TEAGIRRNIDGISGTGLNKLVRH*PMSFIS Trigger: AGATATGAAGGACATTGGGCAGTGCCTTACCAATTT...ATTTAACCCAGTCCCAGAAATTCCATCTATATTCCTTCTTATCCCAGCTTCTGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160476.9 ENSMUST00000239028.2 |
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| CDS-3UTR GCA 90 bp | CTATTTTATCATCTTCATTCCACAGGGATAAAGCACATCTGGAAATTGGGAGGAAAATTGGTAAGGCACTaGCCAATGTCCTTCATATCT | + |
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Preference number: 4 (lower is better) Translates to: LFYHLHSTGIKHIWKLGGKLVRH*PMSFIS Trigger: AGATATGAAGGACATTGGGCAGTGCCTTACCAATTT...TCCTCCCAATTTCCAGATGTGCTTTATCCCTGTGGAATGAAGATGATAAAATAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| CDS-3UTR CAA 90 bp | TGGGGAACTCCGTGCTGTCATGCAGCACTGATGTCAGTGATGTCATTACCTGTGTTTCCTGTAGAAACCTaGTCAAAAACCGGAATCCTT | + |
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Preference number: 5 (lower is better) Translates to: WGTPCCHAALMSVMSLPVFPVET*SKTGIL Trigger: AAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAA...CACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| CDS GCA 90 bp | TCATTTGTTTTCTTCAGTTCCTTCATGAGCCACTGTGCTTCCTCTTaGACTTTGTTCTCAATGGTCCTTTTTCCCATGCCCAAGTTCCTC | + |
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Preference number: 5 (lower is better) Translates to: SFVFFSSFMSHCASS*TLFSMVLFPMPKFL Trigger: GAGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| CDS-3UTR CAA 90 bp | ACAGAAGCTGGGATAAGAAGGAATATAGATGGAATTTCTGGGACTGGGTTAAATCATGCACCACACCATTaGGGCCAAGGTCAATGTACC | + |
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Preference number: 5 (lower is better) Translates to: TEAGIRRNIDGISGTGLNHAPHH*GQGQCT Trigger: GGTACATTGACCTTGGCCCAAATGGTGTGGTGCATG...ATTTAACCCAGTCCCAGAAATTCCATCTATATTCCTTCTTATCCCAGCTTCTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160476.9 ENSMUST00000239028.2 |
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| CDS TCA 90 bp | AGACTACAAATGGATCCATGGAGACCCTTCTTACTGACACTGGTATaGTCAGGCACTCCAGACACTTTATACAGCATTCGCAAATCAATA | + |
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Preference number: 5 (lower is better) Translates to: RLQMDPWRPFLLTLV*SGTPDTLYSIRKSI Trigger: TATTGATTTGCGAATGCTGTATAAAGTGTCTGGAGTGCCTGATCATACCAGTGTCAGTAAGAAGGGTCTCCATGGATCCATTTGTAGTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239028.2 |
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| CDS CCA 90 bp | AAGGTATTCACTGTGAAGACCCTTGTGGCTTTCCATACATTTCCATaGCTAAAACCAATGCCCTTTCCTGTAGAAACCTTGTCAAAAACC | + |
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Preference number: 5 (lower is better) Translates to: KVFTVKTLVAFHTFP*LKPMPFPVETLSKT Trigger: GGTTTTTGACAAGGTTTCTACAGGAAAGGGCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTGAATACCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000160476.9 ENSMUST00000162507.2 ENSMUST00000162630.3 ENSMUST00000239028.2 |
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| CDS-3UTR CAA 90 bp | ACAGAAGCTGGGATAAGAAGGAATATAGATGGAATTTCTGGGACTGGGTTAAATCACAGGGTGAGCCATTaGTTTTCTTCAGTTCCTTCA | + |
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Preference number: 5 (lower is better) Translates to: TEAGIRRNIDGISGTGLNHRVSH*FSSVPS Trigger: TGAAGGAACTGAAGAAAACAAATGGCTCACCCTGTG...ATTTAACCCAGTCCCAGAAATTCCATCTATATTCCTTCTTATCCCAGCTTCTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000160476.9 ENSMUST00000239028.2 |
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| CDS-3UTR CAA 90 bp | ACAGAAGCTGGGATAAGAAGGAATATAGATGGAATTTCTGGGACTGGGTTAAATGAAAATCCAGAATGTTaGGGGGTCATATCGATGTCC | + |
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Preference number: 5 (lower is better) Translates to: TEAGIRRNIDGISGTGLNENPEC*GVISMS Trigger: GGACATCGATATGACCCCCAAACATTCTGGATTTTC...ATTTAACCCAGTCCCAGAAATTCCATCTATATTCCTTCTTATCCCAGCTTCTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000160476.9 ENSMUST00000239028.2 |
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| CDS-3UTR CAA 90 bp | ACCAAAAACCAGATCAGTCACCAATGTTGCCAGGTGTTCAATGGTATAGTCCATTATGTTTTAGAAAAATaGGTAAGGCACTGCCCAATG | + |
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Preference number: 5 (lower is better) Translates to: TKNQISHQCCQVFNGIVHYVLEK*VRHCPM Trigger: CATTGGGCAGTGCCTTACCAATTTTTCTAAAACATA...ATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| CDS-3UTR CAA 90 bp | ACAGAAGCTGGGATAAGAAGGAATATAGATGGAATTTCTGGGACTGGGTTAAATGCTTCCTCTTGCACTTaGTTCTCAATGGTCCTTTTT | + |
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Preference number: 5 (lower is better) Translates to: TEAGIRRNIDGISGTGLNASSCT*FSMVLF Trigger: AAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGC...ATTTAACCCAGTCCCAGAAATTCCATCTATATTCCTTCTTATCCCAGCTTCTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160476.9 ENSMUST00000239028.2 |
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| CDS-3UTR CAA 90 bp | ACAGAAGCTGGGATAAGAAGGAATATAGATGGAATTTCTGGGACTGGGTTAAATTCATATCGATGTCCTTaGGATCAACCAGAGGTTTCA | + |
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Preference number: 5 (lower is better) Translates to: TEAGIRRNIDGISGTGLNSYRCP*DQPEVS Trigger: TGAAACCTCTGGTTGATCCAAAGGACATCGATATGA...ATTTAACCCAGTCCCAGAAATTCCATCTATATTCCTTCTTATCCCAGCTTCTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160476.9 ENSMUST00000239028.2 |
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| CDS-3UTR CAA 90 bp | ACAGAAGCTGGGATAAGAAGGAATATAGATGGAATTTCTGGGACTGGGTTAAATTTTCCTGTAGAAACCTaGTCAAAAACCGGAATCCTT | + |
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Preference number: 5 (lower is better) Translates to: TEAGIRRNIDGISGTGLNFPVET*SKTGIL Trigger: AAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAA...ATTTAACCCAGTCCCAGAAATTCCATCTATATTCCTTCTTATCCCAGCTTCTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000160476.9 ENSMUST00000239028.2 |
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| CDS-3UTR CAA 90 bp | ACAGAAGCTGGGATAAGAAGGAATATAGATGGAATTTCTGGGACTGGGTTAAATTATGTTTTAGAAAAATaGGTAAGGCACTGCCCAATG | + |
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Preference number: 5 (lower is better) Translates to: TEAGIRRNIDGISGTGLNYVLEK*VRHCPM Trigger: CATTGGGCAGTGCCTTACCAATTTTTCTAAAACATA...ATTTAACCCAGTCCCAGAAATTCCATCTATATTCCTTCTTATCCCAGCTTCTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000160476.9 ENSMUST00000239028.2 |
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| CDS-3UTR CAA 90 bp | ACAGAAGCTGGGATAAGAAGGAATATAGATGGAATTTCTGGGACTGGGTTAAATACCAGAGGTTTCAGTTaGAAATTCTGTAAAATGGTG | + |
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Preference number: 5 (lower is better) Translates to: TEAGIRRNIDGISGTGLNTRGFS*KFCKMV Trigger: CACCATTTTACAGAATTTCAAACTGAAACCTCTGGT...ATTTAACCCAGTCCCAGAAATTCCATCTATATTCCTTCTTATCCCAGCTTCTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000160476.9 ENSMUST00000239028.2 |
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| CDS GCA 90 bp | AAGTTTATTATGACTTCCTGGACAATAATCAATAAGAATAGGGACTaGATTGAAAATCTGACACCCAGGAGAGCTCAAAATTTCAGTGCA | + |
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Preference number: 5 (lower is better) Translates to: KFIMTSWTIINKNRD*IENLTPRRAQNFSA Trigger: TGCACTGAAATTTTGAGCTCTCCTGGGTGTCAGATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGTCATAATAAACTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000160476.9 ENSMUST00000239028.2 |
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| CDS TCA 72 bp | ATGGATCCATGGAGACCCTTCTTACTGACACTGGTATaGTCAGGCACTCCAGACACTTTATACAGCATTCGC | + |
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Preference number: 6 (lower is better) Translates to: MDPWRPFLLTLV*SGTPDTLYSIR Trigger: GCGAATGCTGTATAAAGTGTCTGGAGTGCCTGATCATACCAGTGTCAGTAAGAAGGGTCTCCATGGATCCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239028.2 |
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| CDS CAA 90 bp | GCCATTTGTTTTCTTCAGTTCCTTCATGAGCCACTGTGCTTCCTCTaGCACTTTGTTCTCAATGGTCCTTTTTCCCATGCCCAAGTTCCT | + |
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Preference number: 6 (lower is better) Translates to: AICFLQFLHEPLCFL*HFVLNGPFSHAQVP Trigger: AGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000160476.9 ENSMUST00000239028.2 |
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| CDS TCA 72 bp | TTTTTCCCATGCCCAAGTTCCTCAAGGTATTCACTGTaGAGACCCTTGTGGCTTTCCATACATTTCCATGGC | + |
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Preference number: 6 (lower is better) Translates to: FFPCPSSSRYSL*RPLWLSIHFHG Trigger: GCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTGAATACCTTGAGGAACTTGGGCATGGGAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000160476.9 ENSMUST00000162630.3 ENSMUST00000239028.2 |
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| CDS CAA 72 bp | CCATGGCTAAAACCAATGCCCTTTCCTGTAGAAACCTaGTCAAAAACCGGAATCCTTCCTCTTCCAGAGAAC | + |
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Preference number: 6 (lower is better) Translates to: PWLKPMPFPVET*SKTGILPLPEN Trigger: GTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAAGGGCATTGGTTTTAGCCATGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000160476.9 ENSMUST00000162507.2 ENSMUST00000162630.3 ENSMUST00000239028.2 |
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| CDS CAA 72 bp | TTTCTTCAGTTCCTTCATGAGCCACTGTGCTTCCTCTaGCACTTTGTTCTCAATGGTCCTTTTTCCCATGCC | + |
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Preference number: 6 (lower is better) Translates to: FLQFLHEPLCFL*HFVLNGPFSHA Trigger: GGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000160476.9 ENSMUST00000162630.3 ENSMUST00000239028.2 |
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| CDS CCA 72 bp | ACTGTGAAGACCCTTGTGGCTTTCCATACATTTCCATaGCTAAAACCAATGCCCTTTCCTGTAGAAACCTTG | + |
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Preference number: 6 (lower is better) Translates to: TVKTLVAFHTFP*LKPMPFPVETL Trigger: CAAGGTTTCTACAGGAAAGGGCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000160476.9 ENSMUST00000162507.2 ENSMUST00000162630.3 ENSMUST00000239028.2 |
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| CDS CAA 90 bp | CATACATTTCCATGGCTAAAACCAATGCCCTTTCCTGTAGAAACCTaGTCAAAAACCGGAATCCTTCCTCTTCCAGAGAACTCTTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: HTFPWLKPMPFPVET*SKTGILPLPENSSP Trigger: TGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAAGGGCATTGGTTTTAGCCATGGAAATGTATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000160476.9 ENSMUST00000162507.2 ENSMUST00000162630.3 ENSMUST00000239028.2 |
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| CDS CAA 90 bp | TTCATTTGTTTTCTTCAGTTCCTTCATGAGCCACTGTGCTTCCTCTaGCACTTTGTTCTCAATGGTCCTTTTTCCCATGCCCAAGTTCCT | + |
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Preference number: 6 (lower is better) Translates to: FICFLQFLHEPLCFL*HFVLNGPFSHAQVP Trigger: AGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162630.3 |
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| CDS GCA 72 bp | ATGACTTCCTGGACAATAATCAATAAGAATAGGGACTaGATTGAAAATCTGACACCCAGGAGAGCTCAAAAT | + |
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Preference number: 6 (lower is better) Translates to: MTSWTIINKNRD*IENLTPRRAQN Trigger: ATTTTGAGCTCTCCTGGGTGTCAGATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGTCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000160476.9 ENSMUST00000239028.2 |
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