Pregenerated sensors for CYP2C38 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032808Ensembl transcript IDs: ENSMUST00000035488.3
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGAAACCGCATGTGTTTGCTAGGTCTTCAGAAAAGGGGGTTCTGTaGGCCAGGATGGAAGATGCCTTATCCCTGATAAGGAAAGAGGTG | + |
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Preference number: 1 (lower is better) Translates to: QKPHVFARSSEKGVL*ARMEDALSLIRKEV Trigger: CACCTCTTTCCTTATCAGGGATAAGGCATCTTCCATCCTGGCTCACAGAACCCCCTTTTCTGAAGACCTAGCAAACACATGCGGTTTCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| 3UTR GCA 90 bp | GTGTGGATGTATGAGTTTGCTCTAACATTTATGCAGACATACCTCTaGAGTAAGCTTCCAGGTAGGAACTTAGCAATAACAGACACAGGA | + |
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Preference number: 1 (lower is better) Translates to: VWMYEFALTFMQTYL*SKLPGRNLAITDTG Trigger: TCCTGTGTCTGTTATTGCTAAGTTCCTACCTGGAAGCTTACTGCAGAGGTATGTCTGCATAAATGTTAGAGCAAACTCATACATCCACAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| 3UTR-3UTR TCA 90 bp | AGGACTGTCTTGTTTCTTACCCACCAATTTTGCTATAACAAATACACAATACCAGAAAAGGGGGTTCTGTaGGCCAGGATGGAAGATGCC | + |
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Preference number: 2 (lower is better) Translates to: RTVLFLTHQFCYNKYTIPEKGVL*ARMEDA Trigger: GGCATCTTCCATCCTGGCTCACAGAACCCCCTTTTC...TGGTATTGTGTATTTGTTATAGCAAAATTGGTGGGTAAGAAACAAGACAGTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| 3UTR-3UTR GCA 90 bp | ACATTTATGCAGACATACCTCTGCAGTAAGCTTCCAGGTAGGAACTTAGCAATACCTAGCATTTCTTCTTaGATTCTATATGCTTCTTGT | + |
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Preference number: 2 (lower is better) Translates to: TFMQTYLCSKLPGRNLAIPSISS*ILYASC Trigger: ACAAGAAGCATATAGAATGCAAGAAGAAATGCTAGG...TATTGCTAAGTTCCTACCTGGAAGCTTACTGCAGAGGTATGTCTGCATAAATGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| 3UTR CAA 90 bp | GTATATACACATATGTATATGTCAGAGGTGAAATTTGGGTATTGGTaGTTGGGAGATTGCAAGCTTGTTTTGTTGGGACAAGATAACTCT | + |
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Preference number: 2 (lower is better) Translates to: VYTHMYMSEVKFGYW*LGDCKLVLLGQDNS Trigger: AGAGTTATCTTGTCCCAACAAAACAAGCTTGCAATCTCCCAACAACCAATACCCAAATTTCACCTCTGACATATACATATGTGTATATAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| 3UTR-3UTR GCA 90 bp | AGGACTGTCTTGTTTCTTACCCACCAATTTTGCTATAACAAATACACAATACCAATACAAGTGCATTTGTaGTATAACTCCAGAAACCGC | + |
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Preference number: 2 (lower is better) Translates to: RTVLFLTHQFCYNKYTIPIQVHL*YNSRNR Trigger: GCGGTTTCTGGAGTTATAGCACAAATGCACTTGTAT...TGGTATTGTGTATTTGTTATAGCAAAATTGGTGGGTAAGAAACAAGACAGTCCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| 3UTR-3UTR CCA 90 bp | AGGACTGTCTTGTTTCTTACCCACCAATTTTGCTATAACAAATACACAATACCAATTCTAACGCAGGAATaGATAAACATAAGCATAAGG | + |
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Preference number: 2 (lower is better) Translates to: RTVLFLTHQFCYNKYTIPILTQE*INISIR Trigger: CCTTATGCTTATGTTTATCCATTCCTGCGTTAGAAT...TGGTATTGTGTATTTGTTATAGCAAAATTGGTGGGTAAGAAACAAGACAGTCCT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| 3UTR TCA 72 bp | CATGTGTTTGCTAGGTCTTCAGAAAAGGGGGTTCTGTaGGCCAGGATGGAAGATGCCTTATCCCTGATAAGG | + |
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Preference number: 3 (lower is better) Translates to: HVFARSSEKGVL*ARMEDALSLIR Trigger: CCTTATCAGGGATAAGGCATCTTCCATCCTGGCTCACAGAACCCCCTTTTCTGAAGACCTAGCAAACACATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| 3UTR-3UTR CAA 90 bp | CAGGAGCTTCCTTTAAGACTGAGACATGAAGGGATATTGAGTGGTATGAGTGGTTTTGGGTATTGGTTGTaGGGAGATTGCAAGCTTGTT | + |
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Preference number: 3 (lower is better) Translates to: QELPLRLRHEGILSGMSGFGYWL*GDCKLV Trigger: AACAAGCTTGCAATCTCCCAACAACCAATACCCAAA...ACCACTCATACCACTCAATATCCCTTCATGTCTCAGTCTTAAAGGAAGCTCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| 3UTR CCA 72 bp | GGTATTGGTTGTTGGGAGATTGCAAGCTTGTTTTGTTaGGACAAGATAACTCTGGAACATGAGGCCACTAAT | + |
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Preference number: 3 (lower is better) Translates to: GIGCWEIASLFC*DKITLEHEATN Trigger: ATTAGTGGCCTCATGTTCCAGAGTTATCTTGTCCCAACAAAACAAGCTTGCAATCTCCCAACAACCAATACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| 3UTR GCA 72 bp | TCAGAGGTGAAATTTGGGTATTGGTTGTTGGGAGATTaGAAGCTTGTTTTGTTGGGACAAGATAACTCTGGA | + |
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Preference number: 3 (lower is better) Translates to: SEVKFGYWLLGD*KLVLLGQDNSG Trigger: TCCAGAGTTATCTTGTCCCAACAAAACAAGCTTGCAATCTCCCAACAACCAATACCCAAATTTCACCTCTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| 3UTR-3UTR CAA 90 bp | ACATTTATGCAGACATACCTCTGCAGTAAGCTTCCAGGTAGGAACTTAGCAATAATCCTTCCATGGAATTaGTCCTTTAAAGAATGGAGT | + |
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Preference number: 3 (lower is better) Translates to: TFMQTYLCSKLPGRNLAIILPWN*SFKEWS Trigger: ACTCCATTCTTTAAAGGACAAATTCCATGGAAGGAT...TATTGCTAAGTTCCTACCTGGAAGCTTACTGCAGAGGTATGTCTGCATAAATGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| 3UTR CCA 72 bp | ACACATATGTATATGTCAGAGGTGAAATTTGGGTATTaGTTGTTGGGAGATTGCAAGCTTGTTTTGTTGGGA | + |
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Preference number: 3 (lower is better) Translates to: THMYMSEVKFGY*LLGDCKLVLLG Trigger: TCCCAACAAAACAAGCTTGCAATCTCCCAACAACCAATACCCAAATTTCACCTCTGACATATACATATGTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| 3UTR CAA 72 bp | GTGCATTTGTGCTATAACTCCAGAAACCGCATGTGTTaGCTAGGTCTTCAGAAAAGGGGGTTCTGTGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: VHLCYNSRNRMC*LGLQKRGFCEP Trigger: TGGCTCACAGAACCCCCTTTTCTGAAGACCTAGCAAACACATGCGGTTTCTGGAGTTATAGCACAAATGCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| 3UTR CAA 72 bp | TGGAACATGAGGCCACTAATCATGCTTGTCTGGGTATaGAGCAAGCACCAGGACTGTCTTGTTTCTTACCCA | + |
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Preference number: 4 (lower is better) Translates to: WNMRPLIMLVWV*SKHQDCLVSYP Trigger: TGGGTAAGAAACAAGACAGTCCTGGTGCTTGCTCAATACCCAGACAAGCATGATTAGTGGCCTCATGTTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS-3UTR TCA 90 bp | ACATTTATGCAGACATACCTCTGCAGTAAGCTTCCAGGTAGGAACTTAGCAATAAGCCCAAATACAGAGTaGAAACGGGGCCATAGGTTT | + |
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Preference number: 4 (lower is better) Translates to: TFMQTYLCSKLPGRNLAISPNTE*KRGHRF Trigger: AAACCTATGGCCCCGTTTTCACTCTGTATTTGGGCT...TATTGCTAAGTTCCTACCTGGAAGCTTACTGCAGAGGTATGTCTGCATAAATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS-3UTR TCA 90 bp | TGTTTCTTACCCACCAATTTTGCTATAACAAATACACAATACCATACCTGGTCTGAGCACAGCTCAGAATaGATGTGGGGTCACAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: CFLPTNFAITNTQYHTWSEHSSE*MWGHKV Trigger: CACCTTGTGACCCCACATTCATTCTGAGCTGTGCTC...AGACCAGGTATGGTATTGTGTATTTGTTATAGCAAAATTGGTGGGTAAGAAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS-3UTR TCA 90 bp | CAGGAGCTTCCTTTAAGACTGAGACATGAAGGGATATTGAGTGGTATGAGTGGTTGGTTAAGGATTGGTTaGAGTTCTTCACATCAATCT | + |
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Preference number: 4 (lower is better) Translates to: QELPLRLRHEGILSGMSGWLRIG*SSSHQS Trigger: AGATTGATGTGAAGAACTTCAACCAATCCTTAACCA...ACCACTCATACCACTCAATATCCCTTCATGTCTCAGTCTTAAAGGAAGCTCCTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS-3UTR TCA 90 bp | CAGGAGCTTCCTTTAAGACTGAGACATGAAGGGATATTGAGTGGTATGAGTGGTGTTTGTAACATCCAGTaGTTCTTGGTGTTCTTTTAC | + |
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Preference number: 4 (lower is better) Translates to: QELPLRLRHEGILSGMSGVCNIQ*FLVFFY Trigger: GTAAAAGAACACCAAGAATCACTGGATGTTACAAAC...ACCACTCATACCACTCAATATCCCTTCATGTCTCAGTCTTAAAGGAAGCTCCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS-3UTR GCA 90 bp | CTCCCTAGCATTTCTTCTTGCATTCTATATGCTTCTTGTGATGTGAACCAGAATACTGCTTCATACCCATaGAATACAACAATGGGCCGT | + |
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Preference number: 4 (lower is better) Translates to: LPSISSCILYASCDVNQNTASYP*NTTMGR Trigger: ACGGCCCATTGTTGTATTGCATGGGTATGAAGCAGT...ATTCTGGTTCACATCACAAGAAGCATATAGAATGCAAGAAGAAATGCTAGGGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS-3UTR GCA 90 bp | CTCCCTAGCATTTCTTCTTGCATTCTATATGCTTCTTGTGATGTGAACCAGAATTTCCACAAGACACTGTaGTTCTTCTCGAACACGATC | + |
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Preference number: 4 (lower is better) Translates to: LPSISSCILYASCDVNQNFHKTL*FFSNTI Trigger: GATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAA...ATTCTGGTTCACATCACAAGAAGCATATAGAATGCAAGAAGAAATGCTAGGGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS-3UTR GCA 90 bp | CAGGAGCTTCCTTTAAGACTGAGACATGAAGGGATATTGAGTGGTATGAGTGGTTTGTTCGATGTGGTTTaGCTGTTTTTGTTTAATCAG | + |
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Preference number: 4 (lower is better) Translates to: QELPLRLRHEGILSGMSGLFDVV*LFLFNQ Trigger: CTGATTAAACAAAAACAGGCAAACCACATCGAACAA...ACCACTCATACCACTCAATATCCCTTCATGTCTCAGTCTTAAAGGAAGCTCCTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| 3UTR CAA 72 bp | ATGTATATGTCAGAGGTGAAATTTGGGTATTGGTTGTaGGGAGATTGCAAGCTTGTTTTGTTGGGACAAGAT | + |
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Preference number: 4 (lower is better) Translates to: MYMSEVKFGYWL*GDCKLVLLGQD Trigger: ATCTTGTCCCAACAAAACAAGCTTGCAATCTCCCAACAACCAATACCCAAATTTCACCTCTGACATATACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| 3UTR CAA 72 bp | TACACATATGTATATGTCAGAGGTGAAATTTGGGTATaGGTTGTTGGGAGATTGCAAGCTTGTTTTGTTGGG | + |
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Preference number: 4 (lower is better) Translates to: YTYVYVRGEIWV*VVGRLQACFVG Trigger: CCCAACAAAACAAGCTTGCAATCTCCCAACAACCAATACCCAAATTTCACCTCTGACATATACATATGTGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS-3UTR TCA 90 bp | TGTTTCTTACCCACCAATTTTGCTATAACAAATACACAATACCATACCTGGTCTAATGGGGTGGCAGAGTaGTTAATCCATTCACAAATG | + |
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Preference number: 4 (lower is better) Translates to: CFLPTNFAITNTQYHTWSNGVAE*LIHSQM Trigger: CATTTGTGAATGGATTAATCACTCTGCCACCCCATT...AGACCAGGTATGGTATTGTGTATTTGTTATAGCAAAATTGGTGGGTAAGAAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS-3UTR CCA 90 bp | ACATTTATGCAGACATACCTCTGCAGTAAGCTTCCAGGTAGGAACTTAGCAATAAATCTTTTCAGACATTaGGATGTTTTCTCTACCAGA | + |
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Preference number: 4 (lower is better) Translates to: TFMQTYLCSKLPGRNLAINLFRH*DVFSTR Trigger: TCTGGTAGAGAAAACATCCCAATGTCTGAAAAGATT...TATTGCTAAGTTCCTACCTGGAAGCTTACTGCAGAGGTATGTCTGCATAAATGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS-3UTR CCA 90 bp | CATAAGGGCTCAGACAACTGTTATATAAAAGAGATAATACAAGTGCATTTGTGCTGGTCAATCTCTTCTTaGACTTTAGCTGTGACATCT | + |
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Preference number: 4 (lower is better) Translates to: HKGSDNCYIKEIIQVHLCWSISS*TLAVTS Trigger: AGATGTCACAGCTAAAGTCCAAGAAGAGATTGACCA...GCACAAATGCACTTGTATTATCTCTTTTATATAACAGTTGTCTGAGCCCTTATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS-3UTR TCA 90 bp | CATAAGGGCTCAGACAACTGTTATATAAAAGAGATAATACAAGTGCATTTGTGCGGGAGCTCAGAATCTTaGCATTCTCATTTAGTTTTT | + |
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Preference number: 4 (lower is better) Translates to: HKGSDNCYIKEIIQVHLCGSSES*HSHLVF Trigger: AAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCC...GCACAAATGCACTTGTATTATCTCTTTTATATAACAGTTGTCTGAGCCCTTATG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS-3UTR TCA 90 bp | CATAAGGGCTCAGACAACTGTTATATAAAAGAGATAATACAAGTGCATTTGTGCGACCAGATTTTCAAGTaGATATTCTGCTTGTTCGAT | + |
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Preference number: 4 (lower is better) Translates to: HKGSDNCYIKEIIQVHLCDQIFK*IFCLFD Trigger: ATCGAACAAGCAGAATATTCACTTGAAAATCTGGTC...GCACAAATGCACTTGTATTATCTCTTTTATATAACAGTTGTCTGAGCCCTTATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS-3UTR GCA 90 bp | CATAAGGGCTCAGACAACTGTTATATAAAAGAGATAATACAAGTGCATTTGTGCTGTTGTCTCTGTTCCTaGAGCAAAGAGATTATTGAT | + |
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Preference number: 4 (lower is better) Translates to: HKGSDNCYIKEIIQVHLCCCLCS*SKEIID Trigger: ATCAATAATCTCTTTGCTGCAGGAACAGAGACAACA...GCACAAATGCACTTGTATTATCTCTTTTATATAACAGTTGTCTGAGCCCTTATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| 3UTR CAA 72 bp | CAGGAGCTTCCTTTAAGACTGAGACATGAAGGGATATaGAGTGGTATGAGTGGTAATGTAATAATCTTTAAT | + |
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Preference number: 4 (lower is better) Translates to: QELPLRLRHEGI*SGMSGNVIIFN Trigger: ATTAAAGATTATTACATTACCACTCATACCACTCAATATCCCTTCATGTCTCAGTCTTAAAGGAAGCTCCTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| 3UTR CAA 72 bp | GACAACTGTTATATAAAAGAGATAATACAAGTGCATTaGTGCTATAACTCCAGAAACCGCATGTGTTTGCTA | + |
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Preference number: 4 (lower is better) Translates to: DNCYIKEIIQVH*CYNSRNRMCLL Trigger: TAGCAAACACATGCGGTTTCTGGAGTTATAGCACAAATGCACTTGTATTATCTCTTTTATATAACAGTTGTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS-3UTR CAA 90 bp | ACATTTATGCAGACATACCTCTGCAGTAAGCTTCCAGGTAGGAACTTAGCAATAGGGTTGGGGAACTCCTaGCTGTCATGCAGAACTGAT | + |
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Preference number: 5 (lower is better) Translates to: TFMQTYLCSKLPGRNLAIGLGNS*LSCRTD Trigger: ATCAGTTCTGCATGACAGCAAGGAGTTCCCCAACCC...TATTGCTAAGTTCCTACCTGGAAGCTTACTGCAGAGGTATGTCTGCATAAATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS-3UTR CAA 90 bp | CTCCCTAGCATTTCTTCTTGCATTCTATATGCTTCTTGTGATGTGAACCAGAATACTGCATGGGGTAGGTaGTTAGGGACAAGGTTGATG | + |
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Preference number: 5 (lower is better) Translates to: LPSISSCILYASCDVNQNTAWGR*LGTRLM Trigger: CATCAACCTTGTCCCTAACAACCTACCCCATGCAGT...ATTCTGGTTCACATCACAAGAAGCATATAGAATGCAAGAAGAAATGCTAGGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS-3UTR CAA 90 bp | CAGGAGCTTCCTTTAAGACTGAGACATGAAGGGATATTGAGTGGTATGAGTGGTTTCCAACTGTTTCCATaGCTAAAAGTAATGCCAAGG | + |
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Preference number: 5 (lower is better) Translates to: QELPLRLRHEGILSGMSGFQLFP*LKVMPR Trigger: CCTTGGCATTACTTTTAGCAATGGAAACAGTTGGAA...ACCACTCATACCACTCAATATCCCTTCATGTCTCAGTCTTAAAGGAAGCTCCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS-3UTR CAA 90 bp | ACATTTATGCAGACATACCTCTGCAGTAAGCTTCCAGGTAGGAACTTAGCAATACGGGGCCATAGGTTTTaGAGAAATTGGTTAAGGATT | + |
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Preference number: 5 (lower is better) Translates to: TFMQTYLCSKLPGRNLAIRGHRF*RNWLRI Trigger: AATCCTTAACCAATTTCTCAAAAACCTATGGCCCCG...TATTGCTAAGTTCCTACCTGGAAGCTTACTGCAGAGGTATGTCTGCATAAATGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS-3UTR CAA 90 bp | ACATTTATGCAGACATACCTCTGCAGTAAGCTTCCAGGTAGGAACTTAGCAATAATGGTCAATCTCTTCTaGGACTTTAGCTGTGACATC | + |
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Preference number: 5 (lower is better) Translates to: TFMQTYLCSKLPGRNLAIMVNLF*DFSCDI Trigger: GATGTCACAGCTAAAGTCCAAGAAGAGATTGACCAT...TATTGCTAAGTTCCTACCTGGAAGCTTACTGCAGAGGTATGTCTGCATAAATGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS TCA 72 bp | AAAGAGATTATTGATAGTGCAGACCAGATTTTCAAGTaGATATTCTGCTTGTTCGATGTGGTTTGCCTGTTT | + |
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Preference number: 6 (lower is better) Translates to: KEIIDSADQIFK*IFCLFDVVCLF Trigger: AAACAGGCAAACCACATCGAACAAGCAGAATATTCACTTGAAAATCTGGTCTGCACTATCAATAATCTCTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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| CDS CAA 72 bp | AGTGTGAAACGTCTTGTCTCTTTCCAACTGTTTCCATaGCTAAAAGTAATGCCAAGGCCATTATTAATCTTT | + |
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Preference number: 6 (lower is better) Translates to: SVKRLVSFQLFP*LKVMPRPLLIF Trigger: AAAGATTAATAATGGCCTTGGCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035488.3 |
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