RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CYP27A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026170

Ensembl transcript IDs: ENSMUST00000027356.7

Found 91 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp TGCTGTCTTAAGTGGGTGCTGCTCAGTAGAGATTGTGCCAGACATTaGGTGTCTATAGGAAGGGCACAGAGTTCTCCTGTTGAATCTGAC +
Preference number: 2 (lower is better)
Translates to: CCLKWVLLSRDCARH*VSIGRAQSSPVESD
Trigger: GTCAGATTCAACAGGAGAACTCTGTGCCCTTCCTATAGACACCAAATGTCTGGCACAATCTCTACTGAGCAGCACCCACTTAAGACAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
3UTR CCA 72 bp CATGAGACTGGCCAAGAACTTCTGTGCCAGGGCTTCTaGACGAGCTCCATGAAGGCGGGAGCCCAGCTCGGT +
Preference number: 3 (lower is better)
Translates to: HETGQELLCQGF*TSSMKAGAQLG
Trigger: ACCGAGCTGGGCTCCCGCCTTCATGGAGCTCGTCCAGAAGCCCTGGCACAGAAGTTCTTGGCCAGTCTCATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
3UTR GCA 72 bp GTTATTATAAGGTGCTCTGCTGTCTTAAGTGGGTGCTaGTCAGTAGAGATTGTGCCAGACATTTGGTGTCTA +
Preference number: 3 (lower is better)
Translates to: VIIRCSAVLSGC*SVEIVPDIWCL
Trigger: TAGACACCAAATGTCTGGCACAATCTCTACTGAGCAGCACCCACTTAAGACAGCAGAGCACCTTATAATAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
3UTR GCA 72 bp ACTGTTATTATAAGGTGCTCTGCTGTCTTAAGTGGGTaGTGCTCAGTAGAGATTGTGCCAGACATTTGGTGT +
Preference number: 3 (lower is better)
Translates to: TVIIRCSAVLSG*CSVEIVPDIWC
Trigger: ACACCAAATGTCTGGCACAATCTCTACTGAGCAGCACCCACTTAAGACAGCAGAGCACCTTATAATAACAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
3UTR CCA 72 bp AAGGACTGTTATTATAAGGTGCTCTGCTGTCTTAAGTaGGTGCTGCTCAGTAGAGATTGTGCCAGACATTTG +
Preference number: 3 (lower is better)
Translates to: KDCYYKVLCCLK*VLLSRDCARHL
Trigger: CAAATGTCTGGCACAATCTCTACTGAGCAGCACCCACTTAAGACAGCAGAGCACCTTATAATAACAGTCCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
3UTR-3UTR CAA 90 bp TTTAAATCATACCCAAGGACTGTTATTATAAGGTGCTCTGCTGTCTTAAGTGGGGATTGTGCCAGACATTaGGTGTCTATAGGAAGGGCA +
Preference number: 3 (lower is better)
Translates to: FKSYPRTVIIRCSAVLSGDCARH*VSIGRA
Trigger: TGCCCTTCCTATAGACACCAAATGTCTGGCACAATC...CCCACTTAAGACAGCAGAGCACCTTATAATAACAGTCCTTGGGTATGATTTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
3UTR GCA 72 bp TATTTTAAATCATACCCAAGGACTGTTATTATAAGGTaGTCTGCTGTCTTAAGTGGGTGCTGCTCAGTAGAG +
Preference number: 3 (lower is better)
Translates to: YFKSYPRTVIIR*SAVLSGCCSVE
Trigger: CTCTACTGAGCAGCACCCACTTAAGACAGCAGAGCACCTTATAATAACAGTCCTTGGGTATGATTTAAAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR TCA 90 bp GACTGGCCAAGAACTTCTGTGCCAGGGCTTCTGGACGAGCTCCATGAAGGCGGGAGGCGCGGCCGGTCTTaGCCTGTTCCTGGACCCTCC +
Preference number: 4 (lower is better)
Translates to: DWPRTSVPGLLDELHEGGRRGRS*PVPGPS
Trigger: GGAGGGTCCAGGAACAGGTCAAGACCGGCCGCGCCT...CCCGCCTTCATGGAGCTCGTCCAGAAGCCCTGGCACAGAAGTTCTTGGCCAGTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CCA 90 bp CTTCTGTGCCAGGGCTTCTGGACGAGCTCCATGAAGGCGGGAGCCCAGCTCGGTGTACTCTCCTGTGCCTaGAGGGCTGCAGGGATCGTG +
Preference number: 4 (lower is better)
Translates to: LLCQGFWTSSMKAGAQLGVLSCA*RAAGIV
Trigger: CACGATCCCTGCAGCCCTCCAGGCACAGGAGAGTAC...ACCGAGCTGGGCTCCCGCCTTCATGGAGCTCGTCCAGAAGCCCTGGCACAGAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CCA 90 bp CTTCTGTGCCAGGGCTTCTGGACGAGCTCCATGAAGGCGGGAGCCCAGCTCGGTGCAAAGTCCTTGTGCTaGGGCACCTTCCCGAAGGGC +
Preference number: 4 (lower is better)
Translates to: LLCQGFWTSSMKAGAQLGAKSLC*GTFPKG
Trigger: GCCCTTCGGGAAGGTGCCCCAGCACAAGGACTTTGC...ACCGAGCTGGGCTCCCGCCTTCATGGAGCTCGTCCAGAAGCCCTGGCACAGAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CCA 90 bp CTTCTGTGCCAGGGCTTCTGGACGAGCTCCATGAAGGCGGGAGCCCAGCTCGGTGCCTCACCTTCTTGCTaGGAACCAGGACGATGCGGG +
Preference number: 4 (lower is better)
Translates to: LLCQGFWTSSMKAGAQLGASPSC*EPGRCG
Trigger: CCCGCATCGTCCTGGTTCCCAGCAAGAAGGTGAGGC...ACCGAGCTGGGCTCCCGCCTTCATGGAGCTCGTCCAGAAGCCCTGGCACAGAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR GCA 90 bp CCAAGAACTTCTGTGCCAGGGCTTCTGGACGAGCTCCATGAAGGCGGGAGCCCACTCCGTACTCTCCTGTaGCTGGAGGGCTGCAGGGAT +
Preference number: 4 (lower is better)
Translates to: PRTSVPGLLDELHEGGSPLRTLL*LEGCRD
Trigger: ATCCCTGCAGCCCTCCAGGCACAGGAGAGTACGGAG...TGGGCTCCCGCCTTCATGGAGCTCGTCCAGAAGCCCTGGCACAGAAGTTCTTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR GCA 90 bp CAAGAACTTCTGTGCCAGGGCTTCTGGACGAGCTCCATGAAGGCGGGAGCCCAGGCAGCCTCACCTTCTTaGTGGGAACCAGGACGATGC +
Preference number: 4 (lower is better)
Translates to: QELLCQGFWTSSMKAGAQAASPS*WEPGRC
Trigger: GCATCGTCCTGGTTCCCAGCAAGAAGGTGAGGCTGC...CTGGGCTCCCGCCTTCATGGAGCTCGTCCAGAAGCCCTGGCACAGAAGTTCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CCA 90 bp CAGAGTTCTCCTGTTGAATCTGACATCGTGACATGTGACATGAGACTGGCCAAGGGCTCTGGCCCCTTGTaGGCAGAGGCCACGGCCCAC +
Preference number: 4 (lower is better)
Translates to: QSSPVESDIVTCDMRLAKGSGPL*AEATAH
Trigger: GTGGGCCGTGGCCTCTGCCCACAAGGGGCCAGAGCC...CTTGGCCAGTCTCATGTCACATGTCACGATGTCAGATTCAACAGGAGAACTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CCA 90 bp GACTGGCCAAGAACTTCTGTGCCAGGGCTTCTGGACGAGCTCCATGAAGGCGGGCAGTGTCCTCAGGAATaGAGGGTTTCAGGCAGCCAA +
Preference number: 4 (lower is better)
Translates to: DWPRTSVPGLLDELHEGGQCPQE*RVSGSQ
Trigger: TTGGCTGCCTGAAACCCTCCATTCCTGAGGACACTG...CCCGCCTTCATGGAGCTCGTCCAGAAGCCCTGGCACAGAAGTTCTTGGCCAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR GCA 90 bp CCAAGAACTTCTGTGCCAGGGCTTCTGGACGAGCTCCATGAAGGCGGGAGCCCATGTCTCTGCAGAAAATaGAGCCTCACCTTCTTGCTG +
Preference number: 4 (lower is better)
Translates to: PRTSVPGLLDELHEGGSPCLCRK*SLTFLL
Trigger: CAGCAAGAAGGTGAGGCTGCATTTTCTGCAGAGACA...TGGGCTCCCGCCTTCATGGAGCTCGTCCAGAAGCCCTGGCACAGAAGTTCTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR TCA 90 bp CAGAGTTCTCCTGTTGAATCTGACATCGTGACATGTGACATGAGACTGGCCAAGTGGCACCTGGTCCCCTaGTTCACTCTCTGCCCGCAC +
Preference number: 4 (lower is better)
Translates to: QSSPVESDIVTCDMRLAKWHLVP*FTLCPH
Trigger: GTGCGGGCAGAGAGTGAATCAGGGGACCAGGTGCCA...CTTGGCCAGTCTCATGTCACATGTCACGATGTCAGATTCAACAGGAGAACTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR TCA 90 bp CTTCTGTGCCAGGGCTTCTGGACGAGCTCCATGAAGGCGGGAGCCCAGCTCGGTATTTGGGAAGGAAAGTaGTATAGACTGAGTTCTGGA +
Preference number: 4 (lower is better)
Translates to: LLCQGFWTSSMKAGAQLGIWEGK*YRLSSG
Trigger: TCCAGAACTCAGTCTATATCACTTTCCTTCCCAAAT...ACCGAGCTGGGCTCCCGCCTTCATGGAGCTCGTCCAGAAGCCCTGGCACAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CCA 90 bp CCAAGGACTGTTATTATAAGGTGCTCTGCTGTCTTAAGTGGGTGCTGCTCAGTATCGTGGCCTTGGCTCTaGCCCCTTGTGGGCAGAGGC +
Preference number: 4 (lower is better)
Translates to: PRTVIIRCSAVLSGCCSVSWPWL*PLVGRG
Trigger: GCCTCTGCCCACAAGGGGCCAGAGCCAAGGCCACGA...TACTGAGCAGCACCCACTTAAGACAGCAGAGCACCTTATAATAACAGTCCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CCA 90 bp CTCAGTAGAGATTGTGCCAGACATTTGGTGTCTATAGGAAGGGCACAGAGTTCTCAGGGATCGTGGCCTTaGCTCTGGCCCCTTGTGGGC +
Preference number: 4 (lower is better)
Translates to: LSRDCARHLVSIGRAQSSQGSWP*LWPLVG
Trigger: GCCCACAAGGGGCCAGAGCCAAGGCCACGATCCCTG...AGAACTCTGTGCCCTTCCTATAGACACCAAATGTCTGGCACAATCTCTACTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CCA 90 bp CAGAGTTCTCCTGTTGAATCTGACATCGTGACATGTGACATGAGACTGGCCAAGCTCTCTGCCCGCACCTaGTCCAGCCGGGTGATAAAG +
Preference number: 4 (lower is better)
Translates to: QSSPVESDIVTCDMRLAKLSART*SSRVIK
Trigger: CTTTATCACCCGGCTGGACCAGGTGCGGGCAGAGAG...CTTGGCCAGTCTCATGTCACATGTCACGATGTCAGATTCAACAGGAGAACTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR TCA 90 bp CCTGTTGAATCTGACATCGTGACATGTGACATGAGACTGGCCAAGAACTTCTGTTTCCTCAGCCATCGGTaGGGCTGGAAGCTGTTGGGC +
Preference number: 4 (lower is better)
Translates to: PVESDIVTCDMRLAKNFCFLSHR*GWKLLG
Trigger: GCCCAACAGCTTCCAGCCTCACCGATGGCTGAGGAA...ACAGAAGTTCTTGGCCAGTCTCATGTCACATGTCACGATGTCAGATTCAACAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CCA 90 bp GCCAGACATTTGGTGTCTATAGGAAGGGCACAGAGTTCTCCTGTTGAATCTGACGTCTTGTTCAGCACCTaGAGGTCGGGCAAGTGCAGC +
Preference number: 4 (lower is better)
Translates to: ARHLVSIGRAQSSPVESDVLFST*RSGKCS
Trigger: GCTGCACTTGCCCGACCTCCAGGTGCTGAACAAGAC...GTCAGATTCAACAGGAGAACTCTGTGCCCTTCCTATAGACACCAAATGTCTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR GCA 90 bp CCTGTTGAATCTGACATCGTGACATGTGACATGAGACTGGCCAAGAACTTCTGTTGGGCAAAGTCCTTGTaGTGGGGCACCTTCCCGAAG +
Preference number: 4 (lower is better)
Translates to: PVESDIVTCDMRLAKNFCWAKSL*WGTFPK
Trigger: CTTCGGGAAGGTGCCCCAGCACAAGGACTTTGCCCA...ACAGAAGTTCTTGGCCAGTCTCATGTCACATGTCACGATGTCAGATTCAACAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CCA 90 bp CTGCTCAGTAGAGATTGTGCCAGACATTTGGTGTCTATAGGAAGGGCACAGAGTGTCTTGACCTGTTCCTaGACCCTCCGTACTCTCCTG +
Preference number: 4 (lower is better)
Translates to: LLSRDCARHLVSIGRAQSVLTCS*TLRTLL
Trigger: CAGGAGAGTACGGAGGGTCCAGGAACAGGTCAAGAC...ACTCTGTGCCCTTCCTATAGACACCAAATGTCTGGCACAATCTCTACTGAGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CCA 90 bp AGTTCTCCTGTTGAATCTGACATCGTGACATGTGACATGAGACTGGCCAAGAACGCTCAGGAAAGACACTaGGATCCCGGGACACCACGT +
Preference number: 4 (lower is better)
Translates to: SSPVESDIVTCDMRLAKNAQERH*DPGTPR
Trigger: ACGTGGTGTCCCGGGATCCCAGTGTCTTTCCTGAGC...GTTCTTGGCCAGTCTCATGTCACATGTCACGATGTCAGATTCAACAGGAGAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR GCA 90 bp CAGAGTTCTCCTGTTGAATCTGACATCGTGACATGTGACATGAGACTGGCCAAGTTGCATCTCCAGTTCTaGAATCCTCCGACCCAGGCA +
Preference number: 4 (lower is better)
Translates to: QSSPVESDIVTCDMRLAKLHLQF*NPPTQA
Trigger: TGCCTGGGTCGGAGGATTGCAGAACTGGAGATGCAA...CTTGGCCAGTCTCATGTCACATGTCACGATGTCAGATTCAACAGGAGAACTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CCA 90 bp GCCAGACATTTGGTGTCTATAGGAAGGGCACAGAGTTCTCCTGTTGAATCTGACGGGCTCTTTGAAAGGTaGTACAGGGCCCATGTCAGT +
Preference number: 4 (lower is better)
Translates to: ARHLVSIGRAQSSPVESDGLFER*YRAHVS
Trigger: ACTGACATGGGCCCTGTACCACCTTTCAAAGAGCCC...GTCAGATTCAACAGGAGAACTCTGTGCCCTTCCTATAGACACCAAATGTCTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CCA 90 bp AGTTCTCCTGTTGAATCTGACATCGTGACATGTGACATGAGACTGGCCAAGAACGAGGCTGGAAGCTGTTaGGCTCAGGAAAGACACTGG +
Preference number: 4 (lower is better)
Translates to: SSPVESDIVTCDMRLAKNEAGSC*AQERHW
Trigger: CCAGTGTCTTTCCTGAGCCCAACAGCTTCCAGCCTC...GTTCTTGGCCAGTCTCATGTCACATGTCACGATGTCAGATTCAACAGGAGAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CCA 90 bp CCAAGGACTGTTATTATAAGGTGCTCTGCTGTCTTAAGTGGGTGCTGCTCAGTACACTTGCTCCAAGAGTaGGGCACTAGCCAGATTCAC +
Preference number: 4 (lower is better)
Translates to: PRTVIIRCSAVLSGCCSVHLLQE*GTSQIH
Trigger: GTGAATCTGGCTAGTGCCCCACTCTTGGAGCAAGTG...TACTGAGCAGCACCCACTTAAGACAGCAGAGCACCTTATAATAACAGTCCTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
3UTR CAA 72 bp AAGTGGGTGCTGCTCAGTAGAGATTGTGCCAGACATTaGGTGTCTATAGGAAGGGCACAGAGTTCTCCTGTT +
Preference number: 4 (lower is better)
Translates to: KWVLLSRDCARH*VSIGRAQSSPV
Trigger: AACAGGAGAACTCTGTGCCCTTCCTATAGACACCAAATGTCTGGCACAATCTCTACTGAGCAGCACCCACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CCA 90 bp CTCAGTAGAGATTGTGCCAGACATTTGGTGTCTATAGGAAGGGCACAGAGTTCTCCAGTTTCCTGTAGCTaGGCTTTTAGCTCCTGGACT +
Preference number: 4 (lower is better)
Translates to: LSRDCARHLVSIGRAQSSPVSCS*AFSSWT
Trigger: AGTCCAGGAGCTAAAAGCCCAGCTACAGGAAACTGG...AGAACTCTGTGCCCTTCCTATAGACACCAAATGTCTGGCACAATCTCTACTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR GCA 90 bp CTGCTCAGTAGAGATTGTGCCAGACATTTGGTGTCTATAGGAAGGGCACAGAGTCTCTTATTGGGTACTTaGCCTCCTGTCTCATCACTT +
Preference number: 4 (lower is better)
Translates to: LLSRDCARHLVSIGRAQSLLLGT*PPVSSL
Trigger: AAGTGATGAGACAGGAGGGCAAGTACCCAATAAGAG...ACTCTGTGCCCTTCCTATAGACACCAAATGTCTGGCACAATCTCTACTGAGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR GCA 90 bp CTCAGTAGAGATTGTGCCAGACATTTGGTGTCTATAGGAAGGGCACAGAGTTCTCCATTGCTCTCCTTGTaGGATGAAGATCCCATAGGT +
Preference number: 4 (lower is better)
Translates to: LSRDCARHLVSIGRAQSSPLLSL*DEDPIG
Trigger: ACCTATGGGATCTTCATCGCACAAGGAGAGCAATGG...AGAACTCTGTGCCCTTCCTATAGACACCAAATGTCTGGCACAATCTCTACTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CCA 90 bp CTCAGTAGAGATTGTGCCAGACATTTGGTGTCTATAGGAAGGGCACAGAGTTCTACATTGGACCATACTTaGTCTTGTTCAGCACCTGGA +
Preference number: 4 (lower is better)
Translates to: LSRDCARHLVSIGRAQSSTLDHT*SCSAPG
Trigger: TCCAGGTGCTGAACAAGACCAAGTATGGTCCAATGT...AGAACTCTGTGCCCTTCCTATAGACACCAAATGTCTGGCACAATCTCTACTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CCA 90 bp AGTTCTCCTGTTGAATCTGACATCGTGACATGTGACATGAGACTGGCCAAGAACGGAGGTTGTCCACATTaGACCATACTTGGTCTTGTT +
Preference number: 4 (lower is better)
Translates to: SSPVESDIVTCDMRLAKNGGCPH*TILGLV
Trigger: AACAAGACCAAGTATGGTCCAATGTGGACAACCTCC...GTTCTTGGCCAGTCTCATGTCACATGTCACGATGTCAGATTCAACAGGAGAACT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR GCA 90 bp AGTTCTCCTGTTGAATCTGACATCGTGACATGTGACATGAGACTGGCCAAGAACGTTCTGGAACATGATTaGAACAGATCTGATGAAGGC +
Preference number: 4 (lower is better)
Translates to: SSPVESDIVTCDMRLAKNVLEHD*NRSDEG
Trigger: GCCTTCATCAGATCTGTTGCAATCATGTTCCAGAAC...GTTCTTGGCCAGTCTCATGTCACATGTCACGATGTCAGATTCAACAGGAGAACT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR TCA 90 bp TTTAAATCATACCCAAGGACTGTTATTATAAGGTGCTCTGCTGTCTTAAGTGGGCAAACAGGATATAGGTaGTGGCTTCCAAGGCAAGGT +
Preference number: 4 (lower is better)
Translates to: FKSYPRTVIIRCSAVLSGQTGYR*WLPRQG
Trigger: ACCTTGCCTTGGAAGCCATCACCTATATCCTGTTTG...CCCACTTAAGACAGCAGAGCACCTTATAATAACAGTCCTTGGGTATGATTTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR GCA 90 bp TTTAAATCATACCCAAGGACTGTTATTATAAGGTGCTCTGCTGTCTTAAGTGGGCTTGACAGCATCAGTTaGATCTCCAGTTCTGCAATC +
Preference number: 4 (lower is better)
Translates to: FKSYPRTVIIRCSAVLSGLDSIS*ISSSAI
Trigger: GATTGCAGAACTGGAGATGCAACTGATGCTGTCAAG...CCCACTTAAGACAGCAGAGCACCTTATAATAACAGTCCTTGGGTATGATTTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS TCA 90 bp CCGGTCCCCGGAAGCTCCGCCGGACTCCGCAGGCGCGGCCGGTCTTaGCCTGTTCCTGGACCCTCCGTACTCTCCTGTGCCTGGAGGGCT +
Preference number: 5 (lower is better)
Translates to: PVPGSSAGLRRRGRS*PVPGPSVLSCAWRA
Trigger: AGCCCTCCAGGCACAGGAGAGTACGGAGGGTCCAGGAACAGGTCAAGACCGGCCGCGCCTGCGGAGTCCGGCGGAGCTTCCGGGGACCGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CCA 90 bp CTGGACCCTCCGTACTCTCCTGTGCCTGGAGGGCTGCAGGGATCGTaGCCTTGGCTCTGGCCCCTTGTGGGCAGAGGCCACGGCCCACCA +
Preference number: 5 (lower is better)
Translates to: LDPPYSPVPGGLQGS*PWLWPLVGRGHGPP
Trigger: TGGTGGGCCGTGGCCTCTGCCCACAAGGGGCCAGAGCCAAGGCCACGATCCCTGCAGCCCTCCAGGCACAGGAGAGTACGGAGGGTCCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS GCA 90 bp GCGCGGCCGGTCTTGACCTGTTCCTGGACCCTCCGTACTCTCCTGTaGCTGGAGGGCTGCAGGGATCGTGGCCTTGGCTCTGGCCCCTTG +
Preference number: 5 (lower is better)
Translates to: ARPVLTCSWTLRTLL*LEGCRDRGLGSGPL
Trigger: CAAGGGGCCAGAGCCAAGGCCACGATCCCTGCAGCCCTCCAGGCACAGGAGAGTACGGAGGGTCCAGGAACAGGTCAAGACCGGCCGCGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS GCA 90 bp TTGACCTGTTCCTGGACCCTCCGTACTCTCCTGTGCCTGGAGGGCTaGAGGGATCGTGGCCTTGGCTCTGGCCCCTTGTGGGCAGAGGCC +
Preference number: 5 (lower is better)
Translates to: LTCSWTLRTLLCLEG*RDRGLGSGPLWAEA
Trigger: GGCCTCTGCCCACAAGGGGCCAGAGCCAAGGCCACGATCCCTGCAGCCCTCCAGGCACAGGAGAGTACGGAGGGTCCAGGAACAGGTCAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CAA 90 bp CAAGAACTTCTGTGCCAGGGCTTCTGGACGAGCTCCATGAAGGCGGGAGCCCAGGGATCTCTGGGCTCTTaGAAAGGTGGTACAGGGCCC +
Preference number: 5 (lower is better)
Translates to: QELLCQGFWTSSMKAGAQGSLGS*KGGTGP
Trigger: GGGCCCTGTACCACCTTTCAAAGAGCCCAGAGATCC...CTGGGCTCCCGCCTTCATGGAGCTCGTCCAGAAGCCCTGGCACAGAAGTTCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CAA 90 bp CAAGAACTTCTGTGCCAGGGCTTCTGGACGAGCTCCATGAAGGCGGGAGCCCAGTGCAGCCTCACCTTCTaGCTGGGAACCAGGACGATG +
Preference number: 5 (lower is better)
Translates to: QELLCQGFWTSSMKAGAQCSLTF*LGTRTM
Trigger: CATCGTCCTGGTTCCCAGCAAGAAGGTGAGGCTGCA...CTGGGCTCCCGCCTTCATGGAGCTCGTCCAGAAGCCCTGGCACAGAAGTTCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS TCA 90 bp GGCAAGGTGGTAGAGAAGATGAGCCATGTCTGGCACCTGGTCCCCTaGTTCACTCTCTGCCCGCACCTGGTCCAGCCGGGTGATAAAGTC +
Preference number: 5 (lower is better)
Translates to: GKVVEKMSHVWHLVP*FTLCPHLVQPGDKV
Trigger: GACTTTATCACCCGGCTGGACCAGGTGCGGGCAGAGAGTGAATCAGGGGACCAGGTGCCAGACATGGCTCATCTTCTCTACCACCTTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CAA 90 bp CAAGAACTTCTGTGCCAGGGCTTCTGGACGAGCTCCATGAAGGCGGGAGCCCAGACACCAGTCACTTCCTaGTGCAAGGCCTCCTGGATC +
Preference number: 5 (lower is better)
Translates to: QELLCQGFWTSSMKAGAQTPVTS*CKASWI
Trigger: GATCCAGGAGGCCTTGCACAAGGAAGTGACTGGTGT...CTGGGCTCCCGCCTTCATGGAGCTCGTCCAGAAGCCCTGGCACAGAAGTTCTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CCA 90 bp TATCAGCCTCTTTCTTCCTCAGCCATCGGTGAGGCTGGAAGCTGTTaGGCTCAGGAAAGACACTGGGATCCCGGGACACCACGTAGTGGC +
Preference number: 5 (lower is better)
Translates to: YQPLSSSAIGEAGSC*AQERHWDPGTPRSG
Trigger: GCCACTACGTGGTGTCCCGGGATCCCAGTGTCTTTCCTGAGCCCAACAGCTTCCAGCCTCACCGATGGCTGAGGAAGAAAGAGGCTGATA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS TCA 90 bp TGTAGGATCCCAGGGTTATCAGCCTCTTTCTTCCTCAGCCATCGGTaGGGCTGGAAGCTGTTGGGCTCAGGAAAGACACTGGGATCCCGG +
Preference number: 5 (lower is better)
Translates to: CRIPGLSASFFLSHR*GWKLLGSGKTLGSR
Trigger: CCGGGATCCCAGTGTCTTTCCTGAGCCCAACAGCTTCCAGCCTCACCGATGGCTGAGGAAGAAAGAGGCTGATAACCCTGGGATCCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS GCA 90 bp TCTGCAGAAAATGCAGCCTCACCTTCTTGCTGGGAACCAGGACGATaGGGGACACAGTCTTTACTTCTCCCATCCCGGGAGCCAGGGCAA +
Preference number: 5 (lower is better)
Translates to: SAENAASPSCWEPGR*GTQSLLLPSREPGQ
Trigger: TTGCCCTGGCTCCCGGGATGGGAGAAGTAAAGACTGTGTCCCGCATCGTCCTGGTTCCCAGCAAGAAGGTGAGGCTGCATTTTCTGCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CCA 90 bp GCCATGTCTGGCACCTGGTCCCCTGATTCACTCTCTGCCCGCACCTaGTCCAGCCGGGTGATAAAGTCACTGATAACCTCGTTTAAGGCA +
Preference number: 5 (lower is better)
Translates to: AMSGTWSPDSLSART*SSRVIKSLITSFKA
Trigger: TGCCTTAAACGAGGTTATCAGTGACTTTATCACCCGGCTGGACCAGGTGCGGGCAGAGAGTGAATCAGGGGACCAGGTGCCAGACATGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CAA 90 bp CAGAGTTCTCCTGTTGAATCTGACATCGTGACATGTGACATGAGACTGGCCAAGGCAGGGATCGTGGCCTaGGCTCTGGCCCCTTGTGGG +
Preference number: 5 (lower is better)
Translates to: QSSPVESDIVTCDMRLAKAGIVA*ALAPCG
Trigger: CCCACAAGGGGCCAGAGCCAAGGCCACGATCCCTGC...CTTGGCCAGTCTCATGTCACATGTCACGATGTCAGATTCAACAGGAGAACTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CAA 90 bp GACTGGCCAAGAACTTCTGTGCCAGGGCTTCTGGACGAGCTCCATGAAGGCGGGAGGAGGTTGTCCACATaGGACCATACTTGGTCTTGT +
Preference number: 5 (lower is better)
Translates to: DWPRTSVPGLLDELHEGGRRLST*DHTWSC
Trigger: ACAAGACCAAGTATGGTCCAATGTGGACAACCTCCT...CCCGCCTTCATGGAGCTCGTCCAGAAGCCCTGGCACAGAAGTTCTTGGCCAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS GCA 90 bp TCCTTAATCACAGCTTTTAGCAGAGGCATGTGGGCAAAGTCCTTGTaGTGGGGCACCTTCCCGAAGGGCACCACACCAGTCACTTCCTTG +
Preference number: 5 (lower is better)
Translates to: SLITAFSRGMWAKSL*WGTFPKGTTPVTSL
Trigger: CAAGGAAGTGACTGGTGTGGTGCCCTTCGGGAAGGTGCCCCAGCACAAGGACTTTGCCCACATGCCTCTGCTAAAAGCTGTGATTAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CCA 90 bp TTAATCACAGCTTTTAGCAGAGGCATGTGGGCAAAGTCCTTGTGCTaGGGCACCTTCCCGAAGGGCACCACACCAGTCACTTCCTTGTGC +
Preference number: 5 (lower is better)
Translates to: LITAFSRGMWAKSLC*GTFPKGTTPVTSLC
Trigger: GCACAAGGAAGTGACTGGTGTGGTGCCCTTCGGGAAGGTGCCCCAGCACAAGGACTTTGCCCACATGCCTCTGCTAAAAGCTGTGATTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CCA 90 bp TCAGCCATCGGTGAGGCTGGAAGCTGTTGGGCTCAGGAAAGACACTaGGATCCCGGGACACCACGTAGTGGCATAACACAAACTGTGTAT +
Preference number: 5 (lower is better)
Translates to: SAIGEAGSCWAQERH*DPGTPRSGITQTVY
Trigger: ATACACAGTTTGTGTTATGCCACTACGTGGTGTCCCGGGATCCCAGTGTCTTTCCTGAGCCCAACAGCTTCCAGCCTCACCGATGGCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS TCA 90 bp CAGCCAAAAGCAGCTCAGGAAAGGTGCCGATGGTCTCCTGAGTACTaGGCAATTCATTGGTCAGCAGGAAGTGCAGGTAGCCAGATACCC +
Preference number: 5 (lower is better)
Translates to: QPKAAQERCRWSPEY*AIHWSAGSAGSQIP
Trigger: GGGTATCTGGCTACCTGCACTTCCTGCTGACCAATGAATTGCTCAGTACTCAGGAGACCATCGGCACCTTTCCTGAGCTGCTTTTGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CAA 90 bp CTGCTCAGTAGAGATTGTGCCAGACATTTGGTGTCTATAGGAAGGGCACAGAGTATGTGGGCAAAGTCCTaGTGCTGGGGCACCTTCCCG +
Preference number: 5 (lower is better)
Translates to: LLSRDCARHLVSIGRAQSMWAKS*CWGTFP
Trigger: CGGGAAGGTGCCCCAGCACAAGGACTTTGCCCACAT...ACTCTGTGCCCTTCCTATAGACACCAAATGTCTGGCACAATCTCTACTGAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CCA 90 bp CATTGGTGTAAGTCCCAAAGGAGGTTGTCCACATTGGACCATACTTaGTCTTGTTCAGCACCTGGAGGTCGGGCAAGTGCAGCACATAGC +
Preference number: 5 (lower is better)
Translates to: HWCKSQRRLSTLDHT*SCSAPGGRASAAHS
Trigger: GCTATGTGCTGCACTTGCCCGACCTCCAGGTGCTGAACAAGACCAAGTATGGTCCAATGTGGACAACCTCCTTTGGGACTTACACCAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CAA 90 bp CAGAGTTCTCCTGTTGAATCTGACATCGTGACATGTGACATGAGACTGGCCAAGGCCCATGTCAGTGTGTaGGATGTCGTGTCCACCCCA +
Preference number: 5 (lower is better)
Translates to: QSSPVESDIVTCDMRLAKAHVSV*DVVSTP
Trigger: TGGGGTGGACACGACATCCAACACACTGACATGGGC...CTTGGCCAGTCTCATGTCACATGTCACGATGTCAGATTCAACAGGAGAACTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CCA 90 bp AGCCAGATTCACATTGGTGTAAGTCCCAAAGGAGGTTGTCCACATTaGACCATACTTGGTCTTGTTCAGCACCTGGAGGTCGGGCAAGTG +
Preference number: 5 (lower is better)
Translates to: SQIHIGVSPKGGCPH*TILGLVQHLEVGQV
Trigger: CACTTGCCCGACCTCCAGGTGCTGAACAAGACCAAGTATGGTCCAATGTGGACAACCTCCTTTGGGACTTACACCAATGTGAATCTGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS TCA 90 bp GGGCAGCAGAGGACGCGTCCATTTGGGAAGGAAAGTGATATAGACTaGGTTCTGGAACATGATTGCAACAGATCTGATGAAGGCGGCAGT +
Preference number: 5 (lower is better)
Translates to: GQQRTRPFGKESDID*VLEHDCNRSDEGGS
Trigger: ACTGCCGCCTTCATCAGATCTGTTGCAATCATGTTCCAGAACTCAGTCTATATCACTTTCCTTCCCAAATGGACGCGTCCTCTGCTGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CAA 90 bp CCAAGGACTGTTATTATAAGGTGCTCTGCTGTCTTAAGTGGGTGCTGCTCAGTACACATTGGACCATACTaGGTCTTGTTCAGCACCTGG +
Preference number: 5 (lower is better)
Translates to: PRTVIIRCSAVLSGCCSVHIGPY*VLFSTW
Trigger: CCAGGTGCTGAACAAGACCAAGTATGGTCCAATGTG...TACTGAGCAGCACCCACTTAAGACAGCAGAGCACCTTATAATAACAGTCCTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CAA 90 bp CCAAGGACTGTTATTATAAGGTGCTCTGCTGTCTTAAGTGGGTGCTGCTCAGTAAAGTCCCAAAGGAGGTaGTCCACATTGGACCATACT +
Preference number: 5 (lower is better)
Translates to: PRTVIIRCSAVLSGCCSVKSQRR*STLDHT
Trigger: AGTATGGTCCAATGTGGACAACCTCCTTTGGGACTT...TACTGAGCAGCACCCACTTAAGACAGCAGAGCACCTTATAATAACAGTCCTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS-3UTR CAA 90 bp AGTAGAGATTGTGCCAGACATTTGGTGTCTATAGGAAGGGCACAGAGTTCTCCTACAAACTGTGTATTCTaGGGGAAGAGAAAGCCATTA +
Preference number: 5 (lower is better)
Translates to: SRDCARHLVSIGRAQSSPTNCVF*GKRKPL
Trigger: TAATGGCTTTCTCTTCCCCAAGAATACACAGTTTGT...AGGAGAACTCTGTGCCCTTCCTATAGACACCAAATGTCTGGCACAATCTCTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CAA 72 bp GAGGGCTGCAGGGATCGTGGCCTTGGCTCTGGCCCCTaGTGGGCAGAGGCCACGGCCCACCACACGCGGGTC +
Preference number: 6 (lower is better)
Translates to: EGCRDRGLGSGP*WAEATAHHTRV
Trigger: GACCCGCGTGTGGTGGGCCGTGGCCTCTGCCCACAAGGGGCCAGAGCCAAGGCCACGATCCCTGCAGCCCTC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CAA 90 bp CTGTGCCTGGAGGGCTGCAGGGATCGTGGCCTTGGCTCTGGCCCCTaGTGGGCAGAGGCCACGGCCCACCACACGCGGGTCCAGGAGCGT +
Preference number: 6 (lower is better)
Translates to: LCLEGCRDRGLGSGP*WAEATAHHTRVQER
Trigger: ACGCTCCTGGACCCGCGTGTGGTGGGCCGTGGCCTCTGCCCACAAGGGGCCAGAGCCAAGGCCACGATCCCTGCAGCCCTCCAGGCACAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CAA 90 bp TCCGGTCCCCGGAAGCTCCGCCGGACTCCGCAGGCGCGGCCGGTCTaGACCTGTTCCTGGACCCTCCGTACTCTCCTGTGCCTGGAGGGC +
Preference number: 6 (lower is better)
Translates to: SGPRKLRRTPQARPV*TCSWTLRTLLCLEG
Trigger: GCCCTCCAGGCACAGGAGAGTACGGAGGGTCCAGGAACAGGTCAAGACCGGCCGCGCCTGCGGAGTCCGGCGGAGCTTCCGGGGACCGGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CAA 72 bp CGGAAGCTCCGCCGGACTCCGCAGGCGCGGCCGGTCTaGACCTGTTCCTGGACCCTCCGTACTCTCCTGTGC +
Preference number: 6 (lower is better)
Translates to: RKLRRTPQARPV*TCSWTLRTLLC
Trigger: GCACAGGAGAGTACGGAGGGTCCAGGAACAGGTCAAGACCGGCCGCGCCTGCGGAGTCCGGCGGAGCTTCCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CCA 72 bp CCGTACTCTCCTGTGCCTGGAGGGCTGCAGGGATCGTaGCCTTGGCTCTGGCCCCTTGTGGGCAGAGGCCAC +
Preference number: 6 (lower is better)
Translates to: PYSPVPGGLQGS*PWLWPLVGRGH
Trigger: GTGGCCTCTGCCCACAAGGGGCCAGAGCCAAGGCCACGATCCCTGCAGCCCTCCAGGCACAGGAGAGTACGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS GCA 72 bp TCCTGGACCCTCCGTACTCTCCTGTGCCTGGAGGGCTaGAGGGATCGTGGCCTTGGCTCTGGCCCCTTGTGG +
Preference number: 6 (lower is better)
Translates to: SWTLRTLLCLEG*RDRGLGSGPLW
Trigger: CCACAAGGGGCCAGAGCCAAGGCCACGATCCCTGCAGCCCTCCAGGCACAGGAGAGTACGGAGGGTCCAGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS GCA 72 bp GTCTTGACCTGTTCCTGGACCCTCCGTACTCTCCTGTaGCTGGAGGGCTGCAGGGATCGTGGCCTTGGCTCT +
Preference number: 6 (lower is better)
Translates to: VLTCSWTLRTLL*LEGCRDRGLGS
Trigger: AGAGCCAAGGCCACGATCCCTGCAGCCCTCCAGGCACAGGAGAGTACGGAGGGTCCAGGAACAGGTCAAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CCA 72 bp GGCACCTGGTCCCCTGATTCACTCTCTGCCCGCACCTaGTCCAGCCGGGTGATAAAGTCACTGATAACCTCG +
Preference number: 6 (lower is better)
Translates to: GTWSPDSLSART*SSRVIKSLITS
Trigger: CGAGGTTATCAGTGACTTTATCACCCGGCTGGACCAGGTGCGGGCAGAGAGTGAATCAGGGGACCAGGTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CCA 72 bp CTTTCTTCCTCAGCCATCGGTGAGGCTGGAAGCTGTTaGGCTCAGGAAAGACACTGGGATCCCGGGACACCA +
Preference number: 6 (lower is better)
Translates to: LSSSAIGEAGSC*AQERHWDPGTP
Trigger: TGGTGTCCCGGGATCCCAGTGTCTTTCCTGAGCCCAACAGCTTCCAGCCTCACCGATGGCTGAGGAAGAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS GCA 72 bp AATGCAGCCTCACCTTCTTGCTGGGAACCAGGACGATaGGGGACACAGTCTTTACTTCTCCCATCCCGGGAG +
Preference number: 6 (lower is better)
Translates to: NAASPSCWEPGR*GTQSLLLPSRE
Trigger: CTCCCGGGATGGGAGAAGTAAAGACTGTGTCCCGCATCGTCCTGGTTCCCAGCAAGAAGGTGAGGCTGCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CCA 72 bp GGTGAGGCTGGAAGCTGTTGGGCTCAGGAAAGACACTaGGATCCCGGGACACCACGTAGTGGCATAACACAA +
Preference number: 6 (lower is better)
Translates to: GEAGSCWAQERH*DPGTPRSGITQ
Trigger: TTGTGTTATGCCACTACGTGGTGTCCCGGGATCCCAGTGTCTTTCCTGAGCCCAACAGCTTCCAGCCTCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CAA 90 bp GTCTCCTTAATCACAGCTTTTAGCAGAGGCATGTGGGCAAAGTCCTaGTGCTGGGGCACCTTCCCGAAGGGCACCACACCAGTCACTTCC +
Preference number: 6 (lower is better)
Translates to: VSLITAFSRGMWAKS*CWGTFPKGTTPVTS
Trigger: GGAAGTGACTGGTGTGGTGCCCTTCGGGAAGGTGCCCCAGCACAAGGACTTTGCCCACATGCCTCTGCTAAAAGCTGTGATTAAGGAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS TCA 72 bp GCCTCGTCAGGCTTCAGCAGCCTCTGTTTCAAAGCCTaGCGCAGATGGTACCATTGCTCTCCTTGTGCGATG +
Preference number: 6 (lower is better)
Translates to: ASSGFSSLCFKA*RRWYHCSPCAM
Trigger: CATCGCACAAGGAGAGCAATGGTACCATCTGCGTCAGGCTTTGAAACAGAGGCTGCTGAAGCCTGACGAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS TCA 72 bp CCAGGGTTATCAGCCTCTTTCTTCCTCAGCCATCGGTaGGGCTGGAAGCTGTTGGGCTCAGGAAAGACACTG +
Preference number: 6 (lower is better)
Translates to: PGLSASFFLSHR*GWKLLGSGKTL
Trigger: CAGTGTCTTTCCTGAGCCCAACAGCTTCCAGCCTCACCGATGGCTGAGGAAGAAAGAGGCTGATAACCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CAA 90 bp CCTTGTGGTCTCGGTGGTCCTTCCACTGATCCATGTGGTCTCTTATaGGGTACTTGCCCTCCTGTCTCATCACTTGCTCCAAGAGTGGGG +
Preference number: 6 (lower is better)
Translates to: PCGLGGPSTDPCGLL*GTCPPVSSLAPRVG
Trigger: CCCCACTCTTGGAGCAAGTGATGAGACAGGAGGGCAAGTACCCAATAAGAGACCACATGGATCAGTGGAAGGACCACCGAGACCACAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS TCA 72 bp GCAGCTCAGGAAAGGTGCCGATGGTCTCCTGAGTACTaGGCAATTCATTGGTCAGCAGGAAGTGCAGGTAGC +
Preference number: 6 (lower is better)
Translates to: AAQERCRWSPEY*AIHWSAGSAGS
Trigger: GCTACCTGCACTTCCTGCTGACCAATGAATTGCTCAGTACTCAGGAGACCATCGGCACCTTTCCTGAGCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CCA 72 bp AGGGTCTCCTTAATCACAGCTTTTAGCAGAGGCATGTaGGCAAAGTCCTTGTGCTGGGGCACCTTCCCGAAG +
Preference number: 6 (lower is better)
Translates to: RVSLITAFSRGM*AKSLCWGTFPK
Trigger: CTTCGGGAAGGTGCCCCAGCACAAGGACTTTGCCCACATGCCTCTGCTAAAAGCTGTGATTAAGGAGACCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CAA 72 bp CCAAAGGAGGTTGTCCACATTGGACCATACTTGGTCTaGTTCAGCACCTGGAGGTCGGGCAAGTGCAGCACA +
Preference number: 6 (lower is better)
Translates to: PKEVVHIGPYLV*FSTWRSGKCST
Trigger: TGTGCTGCACTTGCCCGACCTCCAGGTGCTGAACAAGACCAAGTATGGTCCAATGTGGACAACCTCCTTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CAA 72 bp CTCTTTGAAAGGTGGTACAGGGCCCATGTCAGTGTGTaGGATGTCGTGTCCACCCCAGCCAAAAGCAGCTCA +
Preference number: 6 (lower is better)
Translates to: LFERWYRAHVSV*DVVSTPAKSSS
Trigger: TGAGCTGCTTTTGGCTGGGGTGGACACGACATCCAACACACTGACATGGGCCCTGTACCACCTTTCAAAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS TCA 72 bp GCCAAAAGCAGCTCAGGAAAGGTGCCGATGGTCTCCTaGGTACTGAGCAATTCATTGGTCAGCAGGAAGTGC +
Preference number: 6 (lower is better)
Translates to: AKSSSGKVPMVS*VLSNSLVSRKC
Trigger: GCACTTCCTGCTGACCAATGAATTGCTCAGTACTCAGGAGACCATCGGCACCTTTCCTGAGCTGCTTTTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CCA 72 bp AAGTCCCAAAGGAGGTTGTCCACATTGGACCATACTTaGTCTTGTTCAGCACCTGGAGGTCGGGCAAGTGCA +
Preference number: 6 (lower is better)
Translates to: KSQRRLSTLDHT*SCSAPGGRASA
Trigger: TGCACTTGCCCGACCTCCAGGTGCTGAACAAGACCAAGTATGGTCCAATGTGGACAACCTCCTTTGGGACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CAA 72 bp CTCGGTGGTCCTTCCACTGATCCATGTGGTCTCTTATaGGGTACTTGCCCTCCTGTCTCATCACTTGCTCCA +
Preference number: 6 (lower is better)
Translates to: LGGPSTDPCGLL*GTCPPVSSLAP
Trigger: TGGAGCAAGTGATGAGACAGGAGGGCAAGTACCCAATAAGAGACCACATGGATCAGTGGAAGGACCACCGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CAA 72 bp CGGGAGCCAGGGCAATCTCATACTTCTGTACCAGCCTaGACAGCATCAGTTGCATCTCCAGTTCTGCAATCC +
Preference number: 6 (lower is better)
Translates to: REPGQSHTSVPA*TASVASPVLQS
Trigger: GGATTGCAGAACTGGAGATGCAACTGATGCTGTCAAGGCTGGTACAGAAGTATGAGATTGCCCTGGCTCCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS TCA 72 bp GGGAGCCAGGGCAATCTCATACTTCTGTACCAGCCTTaGCAGCATCAGTTGCATCTCCAGTTCTGCAATCCT +
Preference number: 6 (lower is better)
Translates to: GSQGNLILLYQP*QHQLHLQFCNP
Trigger: AGGATTGCAGAACTGGAGATGCAACTGATGCTGTCAAGGCTGGTACAGAAGTATGAGATTGCCCTGGCTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CCA 72 bp GATACCCGGACTCCATCTGGCCCAGTTTCCTGTAGCTaGGCTTTTAGCTCCTGGACTTTTTCATCAATCAGC +
Preference number: 6 (lower is better)
Translates to: DTRTPSGPVSCS*AFSSWTFSSIS
Trigger: GCTGATTGATGAAAAAGTCCAGGAGCTAAAAGCCCAGCTACAGGAAACTGGGCCAGATGGAGTCCGGGTATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7
CDS CCA 72 bp CACATTGGTGTAAGTCCCAAAGGAGGTTGTCCACATTaGACCATACTTGGTCTTGTTCAGCACCTGGAGGTC +
Preference number: 6 (lower is better)
Translates to: HIGVSPKGGCPH*TILGLVQHLEV
Trigger: GACCTCCAGGTGCTGAACAAGACCAAGTATGGTCCAATGTGGACAACCTCCTTTGGGACTTACACCAATGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027356.7