Pregenerated sensors for CYP11A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032323Ensembl transcript IDs: ENSMUST00000034874.14, ENSMUST00000188116.7, ENSMUST00000188539.2
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AAGAGGATGAAGGAGAGGAGAGCCCAGCTAACCTGGGCAGGTAATCACAGAGTGCCCTCAAATGCCCCATaGGCCACCTCCCCATGTGAC | + |
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Preference number: 2 (lower is better) Translates to: KRMKERRAQLTWAGNHRVPSNAP*ATSPCD Trigger: GTCACATGGGGAGGTGGCCCATGGGGCATTTGAGGG...CACTCTGTGATTACCTGCCCAGGTTAGCTGGGCTCTCCTCTCCTTCATCCTCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR GCA 90 bp | GAAGATACAGAGATACCACCCTCAAATGCCCCATGGGCCACCTCCCCATGTGACCGCCGGCCCAGACACTaGCGAACACCCCAGCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: EDTEIPPSNAPWATSPCDRRPRH*RTPQPK Trigger: CTTTGGCTGGGGTGTTCGGCAGTGTCTGGGCCGGCG...GTCACATGGGGAGGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CCA 90 bp | CAGAGATACCACCCTCAAATGCCCCATGGGCCACCTCCCCATGTGACTCCAGCCGGGCTCAGGAAAGGTTaGCAGCCTTTGACCAGCACT | + |
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Preference number: 4 (lower is better) Translates to: QRYHPQMPHGPPPHVTPAGLRKG*QPLTST Trigger: AGTGCTGGTCAAAGGCTGCCAACCTTTCCTGAGCCC...GGCTGGAGTCACATGGGGAGGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CCA 90 bp | CAGAGTGCTGTTTCTGAAGATACAGAGATACCACCCTCAAATGCCCCATGGGCCATGTCTCCCTGGGCCTaGCGCCGGGCAGCCAGGACT | + |
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Preference number: 4 (lower is better) Translates to: QSAVSEDTEIPPSNAPWAMSPWA*RRAART Trigger: AGTCCTGGCTGCCCGGCGCCAGGCCCAGGGAGACAT...GGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTTCAGAAACAGCACTCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR TCA 90 bp | AAGAGGATGAAGGAGAGGAGAGCCCAGCTAACCTGGGCAGGTAATCACAGAGTGAGTCTGGAGGCAGGTTaGGCATGGGGACACTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: KRMKERRAQLTWAGNHRVSLEAG*AWGHWC Trigger: ACACCAGTGTCCCCATGCTCAACCTGCCTCCAGACT...CACTCTGTGATTACCTGCCCAGGTTAGCTGGGCTCTCCTCTCCTTCATCCTCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR TCA 90 bp | AAGATACAGAGATACCACCCTCAAATGCCCCATGGGCCACCTCCCCATGTGACTTGGCCTGGATGTTCTTaGAGGGCAGCTTGTTGCCCC | + |
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Preference number: 4 (lower is better) Translates to: KIQRYHPQMPHGPPPHVTWPGCS*RAACCP Trigger: GGGGCAACAAGCTGCCCTTCAAGAACATCCAGGCCA...AGTCACATGGGGAGGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CCA 90 bp | AAGATACAGAGATACCACCCTCAAATGCCCCATGGGCCACCTCCCCATGTGACTTTTTCTGGTCACGGCTaGGCCCAGGTCCTGCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: KIQRYHPQMPHGPPPHVTFSGHG*AQVLLE Trigger: CTCAAGCAGGACCTGGGCCCAGCCGTGACCAGAAAA...AGTCACATGGGGAGGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR GCA 90 bp | AAGAGGATGAAGGAGAGGAGAGCCCAGCTAACCTGGGCAGGTAATCACAGAGTGCACATCCCAGGCAGCTaGATGGTCCTTCCAGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: KRMKERRAQLTWAGNHRVHIPGS*MVLPGL Trigger: AAGACCTGGAAGGACCATGCAGCTGCCTGGGATGTG...CACTCTGTGATTACCTGCCCAGGTTAGCTGGGCTCTCCTCTCCTTCATCCTCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR GCA 90 bp | GAAGATACAGAGATACCACCCTCAAATGCCCCATGGGCCACCTCCCCATGTGACTTCACAGTGTACCTCTaGAAGGTCACGGAGATGGGG | + |
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Preference number: 4 (lower is better) Translates to: EDTEIPPSNAPWATSPCDFTVYL*KVTEMG Trigger: CCCCATCTCCGTGACCTTGCAGAGGTACACTGTGAA...GTCACATGGGGAGGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CCA 90 bp | CAGAGATACCACCCTCAAATGCCCCATGGGCCACCTCCCCATGTGACTCCAGCCGCTTCTCCCTGTAAATaGGGCCATACTTTTGGAAAC | + |
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Preference number: 4 (lower is better) Translates to: QRYHPQMPHGPPPHVTPAASPCK*GHTFGN Trigger: GTTTCCAAAAGTATGGCCCCATTTACAGGGAGAAGC...GGCTGGAGTCACATGGGGAGGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CCA 90 bp | AGTGCTGTTTCTGAAGATACAGAGATACCACCCTCAAATGCCCCATGGGCCACCGCATTGATGAACCGCTaGGCCTCGGGATCCACGATC | + |
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Preference number: 4 (lower is better) Translates to: SAVSEDTEIPPSNAPWATALMNR*ASGSTI Trigger: GATCGTGGATCCCGAGGCCCAGCGGTTCATCAATGC...GGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTTCAGAAACAGCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CCA 90 bp | GAAGATACAGAGATACCACCCTCAAATGCCCCATGGGCCACCTCCCCATGTGACCTCTCCCTCCAGAAGTaGTACAGGTTTAGCCAACCA | + |
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Preference number: 4 (lower is better) Translates to: EDTEIPPSNAPWATSPCDLSLQK*YRFSQP Trigger: TGGTTGGCTAAACCTGTACCACTTCTGGAGGGAGAG...GTCACATGGGGAGGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CCA 90 bp | AAGATACAGAGATACCACCCTCAAATGCCCCATGGGCCACCTCCCCATGTGACTTCCTGCTTGAGAGGCTaGAAGTTGAAGAGGATGGGG | + |
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Preference number: 4 (lower is better) Translates to: KIQRYHPQMPHGPPPHVTSCLRG*KLKRMG Trigger: CCCCATCCTCTTCAACTTCCAGCCTCTCAAGCAGGA...AGTCACATGGGGAGGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR TCA 90 bp | TGGGCAGGTAATCACAGAGTGCTGTTTCTGAAGATACAGAGATACCACCCTCAAAAGGTTGGCAGCCTTTaGCCAGCACTGAGCGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: WAGNHRVLFLKIQRYHPQKVGSL*PALSAG Trigger: CCCTGCGCTCAGTGCTGGTCAAAGGCTGCCAACCTT...TTGAGGGTGGTATCTCTGTATCTTCAGAAACAGCACTCTGTGATTACCTGCCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CCA 90 bp | AAGATACAGAGATACCACCCTCAAATGCCCCATGGGCCACCTCCCCATGTGACTGTATCGACGCATCCTTaGGGTCCACGATGTAAACTG | + |
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Preference number: 4 (lower is better) Translates to: KIQRYHPQMPHGPPPHVTVSTHP*GPRCKL Trigger: CAGTTTACATCGTGGACCCCAAGGATGCGTCGATAC...AGTCACATGGGGAGGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CCA 90 bp | GAAGATACAGAGATACCACCCTCAAATGCCCCATGGGCCACCTCCCCATGTGACCCCAAGTACCGGAAGTaGGTGGTATTTTGGCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: EDTEIPPSNAPWATSPCDPKYRK*VVFWLF Trigger: AAAAAGCCAAAATACCACCCACTTCCGGTACTTGGG...GTCACATGGGGAGGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CCA 90 bp | TGGGCAGGTAATCACAGAGTGCTGTTTCTGAAGATACAGAGATACCACCCTCAAGCAAGGTCACGGAGATaGGGTGGAGTCTCAGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: WAGNHRVLFLKIQRYHPQARSRR*GGVSVS Trigger: AGACACTGAGACTCCACCCCATCTCCGTGACCTTGC...TTGAGGGTGGTATCTCTGTATCTTCAGAAACAGCACTCTGTGATTACCTGCCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR TCA 90 bp | AAGATACAGAGATACCACCCTCAAATGCCCCATGGGCCACCTCCCCATGTGACTACTCATCAGCTTTATTaGAAATCACATCCCAGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: KIQRYHPQMPHGPPPHVTTHQLY*KSHPRQ Trigger: CTGCCTGGGATGTGATTTTCAATAAAGCTGATGAGT...AGTCACATGGGGAGGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR GCA 90 bp | CTCAGTGTTCAAGTGTTTATTAACTCCCTGGGTAGGGAAAGAGGGAAAGAGGATCGTGTCCACCCCTCCTaGCAGCATCTCGGTAATGTT | + |
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Preference number: 4 (lower is better) Translates to: LSVQVFINSLGRERGKEDRVHPS*QHLGNV Trigger: AACATTACCGAGATGCTGGCAGGAGGGGTGGACACG...ATCCTCTTTCCCTCTTTCCCTACCCAGGGAGTTAATAAACACTTGAACACTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CCA 90 bp | GCAGGTAATCACAGAGTGCTGTTTCTGAAGATACAGAGATACCACCCTCAAATGCCAACTGTACCATCTTaGCCATGTCTCCCTGGGCCT | + |
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Preference number: 4 (lower is better) Translates to: AGNHRVLFLKIQRYHPQMPTVPS*PCLPGP Trigger: AGGCCCAGGGAGACATGGCCAAGATGGTACAGTTGG...CATTTGAGGGTGGTATCTCTGTATCTTCAGAAACAGCACTCTGTGATTACCTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CCA 90 bp | CTCAGTGTTCAAGTGTTTATTAACTCCCTGGGTAGGGAAAGAGGGAAAGAGGATCAGTGTTGTCTTTTCTaGTCACGGCTGGGCCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: LSVQVFINSLGRERGKEDQCCLF*SRLGPG Trigger: ACCTGGGCCCAGCCGTGACCAGAAAAGACAACACTG...ATCCTCTTTCCCTCTTTCCCTACCCAGGGAGTTAATAAACACTTGAACACTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CCA 90 bp | CTCAGTGTTCAAGTGTTTATTAACTCCCTGGGTAGGGAAAGAGGGAAAGAGGATTCGGTAATGTTGGCCTaGATGTTCTTGAAGGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: LSVQVFINSLGRERGKEDSVMLA*MFLKGS Trigger: GCTGCCCTTCAAGAACATCCAGGCCAACATTACCGA...ATCCTCTTTCCCTCTTTCCCTACCCAGGGAGTTAATAAACACTTGAACACTGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CCA 90 bp | TGGGCAGGTAATCACAGAGTGCTGTTTCTGAAGATACAGAGATACCACCCTCAAGCTGGCTTTGAGGAGTaGAACCAACTGTACCATCTT | + |
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Preference number: 4 (lower is better) Translates to: WAGNHRVLFLKIQRYHPQAGFEE*NQLYHL Trigger: AAGATGGTACAGTTGGTTCCACTCCTCAAAGCCAGC...TTGAGGGTGGTATCTCTGTATCTTCAGAAACAGCACTCTGTGATTACCTGCCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CCA 90 bp | AAGATACAGAGATACCACCCTCAAATGCCCCATGGGCCACCTCCCCATGTGACTTACCAAAGTCTTGGCTaGAATCTTGTAATTACGAAG | + |
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Preference number: 4 (lower is better) Translates to: KIQRYHPQMPHGPPPHVTYQSLG*NLVITK Trigger: CTTCGTAATTACAAGATTCCAGCCAAGACTTTGGTA...AGTCACATGGGGAGGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CCA 90 bp | AGTGCTGTTTCTGAAGATACAGAGATACCACCCTCAAATGCCCCATGGGCCACCCCTGTACCAAAGTCTTaGCTGGAATCTTGTAATTAC | + |
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Preference number: 4 (lower is better) Translates to: SAVSEDTEIPPSNAPWATPVPKS*LESCNY Trigger: GTAATTACAAGATTCCAGCCAAGACTTTGGTACAGG...GGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTTCAGAAACAGCACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR GCA 90 bp | AGTGCTGTTTCTGAAGATACAGAGATACCACCCTCAAATGCCCCATGGGCCACCAAATTTCCAGAATTTTaGTGCTTGATGCGTCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: SAVSEDTEIPPSNAPWATKFPEF*CLMRLC Trigger: ACACAGACGCATCAAGCAGCAAAATTCTGGAAATTT...GGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTTCAGAAACAGCACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR GCA 90 bp | CTCAGTGTTCAAGTGTTTATTAACTCCCTGGGTAGGGAAAGAGGGAAAGAGGATAATGGATTTTCTGTGTaGCACTCTCCCTCCAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: LSVQVFINSLGRERGKEDNGFSV*HSPSRS Trigger: ACTTCTGGAGGGAGAGTGGCACACAGAAAATCCATT...ATCCTCTTTCCCTCTTTCCCTACCCAGGGAGTTAATAAACACTTGAACACTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR TCA 90 bp | CTCAGTGTTCAAGTGTTTATTAACTCCCTGGGTAGGGAAAGAGGGAAAGAGGATCAGAATTTTGCTGCTTaGTGCGTCTGTGTAAGACTT | + |
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Preference number: 4 (lower is better) Translates to: LSVQVFINSLGRERGKEDQNFAA*CVCVRL Trigger: AAGTCTTACACAGACGCATCAAGCAGCAAAATTCTG...ATCCTCTTTCCCTCTTTCCCTACCCAGGGAGTTAATAAACACTTGAACACTGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR TCA 90 bp | CTCAGTGTTCAAGTGTTTATTAACTCCCTGGGTAGGGAAAGAGGGAAAGAGGATACATCACGGAGATTTTaGACTTCAATTCTGAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: LSVQVFINSLGRERGKEDTSRRF*TSILKF Trigger: GAACTTCAGAATTGAAGTTCAAAATCTCCGTGATGT...ATCCTCTTTCCCTCTTTCCCTACCCAGGGAGTTAATAAACACTTGAACACTGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS CCA 90 bp | CCAGTACTCAGCACTGGACCCTGCCACGTAGGGCTCAGGAAAGGTTaGCAGCCTTTGACCAGCACTGAGCGCAGGGAAAGTCCTTTAGCC | + |
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Preference number: 5 (lower is better) Translates to: PVLSTGPCHVGLRKG*QPLTSTERRESPLA Trigger: GGCTAAAGGACTTTCCCTGCGCTCAGTGCTGGTCAAAGGCTGCCAACCTTTCCTGAGCCCTACGTGGCAGGGTCCAGTGCTGAGTACTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS CCA 90 bp | AGGACTGCTAGTAGAGGTACCAGCTCCCTTTCCAGTACTCAGCACTaGACCCTGCCACGTAGGGCTCAGGAAAGGTTGGCAGCCTTTGAC | + |
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Preference number: 5 (lower is better) Translates to: RTASRGTSSLSSTQH*TLPRRAQERLAAFD Trigger: GTCAAAGGCTGCCAACCTTTCCTGAGCCCTACGTGGCAGGGTCCAGTGCTGAGTACTGGAAAGGGAGCTGGTACCTCTACTAGCAGTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CAA 90 bp | GAAGATACAGAGATACCACCCTCAAATGCCCCATGGGCCACCTCCCCATGTGACAGGTTTAGCCAACCATaGTCGCCAGGGGAAGGGATC | + |
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Preference number: 5 (lower is better) Translates to: EDTEIPPSNAPWATSPCDRFSQP*SPGEGI Trigger: GATCCCTTCCCCTGGCGACAATGGTTGGCTAAACCT...GTCACATGGGGAGGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CAA 90 bp | CAGAGATACCACCCTCAAATGCCCCATGGGCCACCTCCCCATGTGACTCCAGCCTTGGGTCAAACTTGTTaGGATTGGGAAAGAAGCCCG | + |
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Preference number: 5 (lower is better) Translates to: QRYHPQMPHGPPPHVTPALGQTC*DWERSP Trigger: CGGGCTTCTTTCCCAATCCAAACAAGTTTGACCCAA...GGCTGGAGTCACATGGGGAGGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS GCA 90 bp | AGCCAGGACTTCAGCCCGCAGCATCTCCTGTACCTTCAAGTTGTGTaGCATCTCATAAAGGTTCCACTGCAGGGTCATGGAGGTCGTGTC | + |
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Preference number: 5 (lower is better) Translates to: SQDFSPQHLLYLQVV*HLIKVPLQGHGGRV Trigger: GACACGACCTCCATGACCCTGCAGTGGAACCTTTATGAGATGGCACACAACTTGAAGGTACAGGAGATGCTGCGGGCTGAAGTCCTGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034874.14 ENSMUST00000188539.2 |
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| CDS CCA 90 bp | AGCAGGGGCACGAAGTTCTTGATGGCTCCAGGCGCCATCACCTCTTaGTTTAGGACGATTCGGTCTTTCTTCCAGGCATCTGAACTCCTT | + |
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Preference number: 5 (lower is better) Translates to: SRGTKFLMAPGAITS*FRTIRSFFQASELL Trigger: AAGGAGTTCAGATGCCTGGAAGAAAGACCGAATCGTCCTAAACCAAGAGGTGATGGCGCCTGGAGCCATCAAGAACTTCGTGCCCCTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188539.2 |
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| CDS-3UTR CAA 90 bp | GAAGATACAGAGATACCACCCTCAAATGCCCCATGGGCCACCTCCCCATGTGACTCCTTGATGCTGGCTTaGAGGAGTGGAACCAACTGT | + |
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Preference number: 5 (lower is better) Translates to: EDTEIPPSNAPWATSPCDSLMLA*RSGTNC Trigger: ACAGTTGGTTCCACTCCTCAAAGCCAGCATCAAGGA...GTCACATGGGGAGGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS CCA 90 bp | AGCAGGGGCACGAAGTTCTTGATGGCTCCAGGCGCCATCACCTCTTaGTTTAGGACGATTCGGTCTTTCTTCCAGGCATCTGAACTCTTA | + |
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Preference number: 5 (lower is better) Translates to: SRGTKFLMAPGAITS*FRTIRSFFQASELL Trigger: TAAGAGTTCAGATGCCTGGAAGAAAGACCGAATCGTCCTAAACCAAGAGGTGATGGCGCCTGGAGCCATCAAGAACTTCGTGCCCCTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS CCA 90 bp | TGCATGGTCCTTCCAGGTCTTAGTTCTGAGGAGTCGAAAGAAGTCTaGAGGCAGGTTGAGCATGGGGACACTGGTGTGGAACATCTGGTA | + |
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Preference number: 5 (lower is better) Translates to: CMVLPGLSSEESKEV*RQVEHGDTGVEHLV Trigger: TACCAGATGTTCCACACCAGTGTCCCCATGCTCAACCTGCCTCCAGACTTCTTTCGACTCCTCAGAACTAAGACCTGGAAGGACCATGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034874.14 ENSMUST00000188116.7 ENSMUST00000188539.2 |
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| CDS GCA 90 bp | TTCGGTCTTTCTTCCAGGCATCTGAACTCCTTCTCCACTCAGTTTTaGATTTCAGGACAGCCGTGTCGTGGACCTGAGTCTGTACCTGTA | + |
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Preference number: 5 (lower is better) Translates to: FGLSSRHLNSFSTQF*ISGQPCRGPESVPV Trigger: TACAGGTACAGACTCAGGTCCACGACACGGCTGTCCTGAAATGCAAAACTGAGTGGAGAAGGAGTTCAGATGCCTGGAAGAAAGACCGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188539.2 |
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| CDS-3UTR CAA 90 bp | GCAGGTAATCACAGAGTGCTGTTTCTGAAGATACAGAGATACCACCCTCAAATGAAAGGTTGGCAGCCTTaGACCAGCACTGAGCGCAGG | + |
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Preference number: 5 (lower is better) Translates to: AGNHRVLFLKIQRYHPQMKGWQP*TSTERR Trigger: CCTGCGCTCAGTGCTGGTCAAAGGCTGCCAACCTTT...CATTTGAGGGTGGTATCTCTGTATCTTCAGAAACAGCACTCTGTGATTACCTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CAA 90 bp | ATACAGAGATACCACCCTCAAATGCCCCATGGGCCACCTCCCCATGTGACTCCAGAAATTTCCAGAATTTaGCTGCTTGATGCGTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: IQRYHPQMPHGPPPHVTPEISRI*LLDASV Trigger: CACAGACGCATCAAGCAGCAAAATTCTGGAAATTTC...TGGAGTCACATGGGGAGGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CAA 90 bp | GCAGGTAATCACAGAGTGCTGTTTCTGAAGATACAGAGATACCACCCTCAAATGACCAACTGTACCATCTaGGCCATGTCTCCCTGGGCC | + |
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Preference number: 5 (lower is better) Translates to: AGNHRVLFLKIQRYHPQMTNCTI*AMSPWA Trigger: GGCCCAGGGAGACATGGCCAAGATGGTACAGTTGGT...CATTTGAGGGTGGTATCTCTGTATCTTCAGAAACAGCACTCTGTGATTACCTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CAA 90 bp | AAGAGGATGAAGGAGAGGAGAGCCCAGCTAACCTGGGCAGGTAATCACAGAGTGTCAAACTTGTTTGGATaGGGAAAGAAGCCCGGATCT | + |
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Preference number: 5 (lower is better) Translates to: KRMKERRAQLTWAGNHRVSNLFG*GKKPGS Trigger: AGATCCGGGCTTCTTTCCCAATCCAAACAAGTTTGA...CACTCTGTGATTACCTGCCCAGGTTAGCTGGGCTCTCCTCTCCTTCATCCTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS TCA 90 bp | CTTCTCCACTCAGTTTTGCATTTCAGGACAGCCGTGTCGTGGACCTaGGTCTGTACCTGTACATTGTGGCAGGTATATGCAACCTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: LLHSVLHFRTAVSWT*VCTCTLWQVYATFS Trigger: AGAGAAGGTTGCATATACCTGCCACAATGTACAGGTACAGACTCAGGTCCACGACACGGCTGTCCTGAAATGCAAAACTGAGTGGAGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188539.2 |
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| CDS-3UTR CAA 90 bp | GCAGGTAATCACAGAGTGCTGTTTCTGAAGATACAGAGATACCACCCTCAAATGTTGGCCTGGATGTTCTaGAAGGGCAGCTTGTTGCCC | + |
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Preference number: 5 (lower is better) Translates to: AGNHRVLFLKIQRYHPQMLAWMF*KGSLLP Trigger: GGGCAACAAGCTGCCCTTCAAGAACATCCAGGCCAA...CATTTGAGGGTGGTATCTCTGTATCTTCAGAAACAGCACTCTGTGATTACCTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CAA 90 bp | CAGAGTGCTGTTTCTGAAGATACAGAGATACCACCCTCAAATGCCCCATGGGCCAAGTTCTCCAGCAGATaGATAAGGAGGATGGTCATC | + |
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Preference number: 5 (lower is better) Translates to: QSAVSEDTEIPPSNAPWAKFSSR*IRRMVI Trigger: GATGACCATCCTCCTTATCAATCTGCTGGAGAACTT...GGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTTCAGAAACAGCACTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CAA 90 bp | GCAGGTAATCACAGAGTGCTGTTTCTGAAGATACAGAGATACCACCCTCAAATGAGGATGAGGCTGAACTaGGTCCCCACATCACGGAGA | + |
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Preference number: 5 (lower is better) Translates to: AGNHRVLFLKIQRYHPQMRMRLN*VPTSRR Trigger: TCTCCGTGATGTGGGGACCAAGTTCAGCCTCATCCT...CATTTGAGGGTGGTATCTCTGTATCTTCAGAAACAGCACTCTGTGATTACCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS TCA 90 bp | GGCATCAGGATGAGGCTGAACTTGGTCCCCACATCACGGAGATTTTaGACTTCAATTCTGAAGTTCTCCAGCAGATTGATAAGGAGGATG | + |
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Preference number: 5 (lower is better) Translates to: GIRMRLNLVPTSRRF*TSILKFSSRLIRRM Trigger: CATCCTCCTTATCAATCTGCTGGAGAACTTCAGAATTGAAGTTCAAAATCTCCGTGATGTGGGGACCAAGTTCAGCCTCATCCTGATGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CAA 90 bp | AGTGCTGTTTCTGAAGATACAGAGATACCACCCTCAAATGCCCCATGGGCCACCTACTCATCAGCTTTATaGAAAATCACATCCCAGGCA | + |
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Preference number: 5 (lower is better) Translates to: SAVSEDTEIPPSNAPWATYSSAL*KITSQA Trigger: TGCCTGGGATGTGATTTTCAATAAAGCTGATGAGTA...GGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTTCAGAAACAGCACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS CCA 90 bp | CCACGATGTAAACTGACTCCAAAGTGCCCAGCTTCTCCCTGTAAATaGGGCCATACTTTTGGAAACTCTGCATCTGATGGTAATGGATTT | + |
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Preference number: 5 (lower is better) Translates to: PRCKLTPKCPASPCK*GHTFGNSASDGNGF Trigger: AAATCCATTACCATCAGATGCAGAGTTTCCAAAAGTATGGCCCCATTTACAGGGAGAAGCTGGGCACTTTGGAGTCAGTTTACATCGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CAA 90 bp | TGGGCAGGTAATCACAGAGTGCTGTTTCTGAAGATACAGAGATACCACCCTCAAAATGGGGCCATACTTTaGGAAACTCTGCATCTGATG | + |
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Preference number: 5 (lower is better) Translates to: WAGNHRVLFLKIQRYHPQNGAIL*ETLHLM Trigger: CATCAGATGCAGAGTTTCCAAAAGTATGGCCCCATT...TTGAGGGTGGTATCTCTGTATCTTCAGAAACAGCACTCTGTGATTACCTGCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CAA 90 bp | CAGAGTGCTGTTTCTGAAGATACAGAGATACCACCCTCAAATGCCCCATGGGCCCACATCACGGAGATTTaGAACTTCAATTCTGAAGTT | + |
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Preference number: 5 (lower is better) Translates to: QSAVSEDTEIPPSNAPWAHITEI*NFNSEV Trigger: AACTTCAGAATTGAAGTTCAAAATCTCCGTGATGTG...GGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTTCAGAAACAGCACTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS GCA 90 bp | CATACTTTTGGAAACTCTGCATCTGATGGTAATGGATTTTCTGTGTaGCACTCTCCCTCCAGAAGTGGTACAGGTTTAGCCAACCATTGT | + |
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Preference number: 5 (lower is better) Translates to: HTFGNSASDGNGFSV*HSPSRSGTGLANHC Trigger: ACAATGGTTGGCTAAACCTGTACCACTTCTGGAGGGAGAGTGGCACACAGAAAATCCATTACCATCAGATGCAGAGTTTCCAAAAGTATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS-3UTR CAA 90 bp | GCAGGTAATCACAGAGTGCTGTTTCTGAAGATACAGAGATACCACCCTCAAATGCGAGTTGGGTCAAACTaGTTTGGATTGGGAAAGAAG | + |
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Preference number: 5 (lower is better) Translates to: AGNHRVLFLKIQRYHPQMRVGSN*FGLGKK Trigger: CTTCTTTCCCAATCCAAACAAGTTTGACCCAACTCG...CATTTGAGGGTGGTATCTCTGTATCTTCAGAAACAGCACTCTGTGATTACCTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS CCA 72 bp | ACCAACTGTACCATCTTGGCCATGTCTCCCTGGGCCTaGCGCCGGGCAGCCAGGACTTCAGCCCGCAGCATC | + |
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Preference number: 6 (lower is better) Translates to: TNCTILAMSPWA*RRAARTSARSI Trigger: GATGCTGCGGGCTGAAGTCCTGGCTGCCCGGCGCCAGGCCCAGGGAGACATGGCCAAGATGGTACAGTTGGT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034874.14 ENSMUST00000188539.2 |
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| CDS CAA 72 bp | ATGCTGGCTTTGAGGAGTGGAACCAACTGTACCATCTaGGCCATGTCTCCCTGGGCCTGGCGCCGGGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: MLALRSGTNCTI*AMSPWAWRRAA Trigger: GGCTGCCCGGCGCCAGGCCCAGGGAGACATGGCCAAGATGGTACAGTTGGTTCCACTCCTCAAAGCCAGCAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034874.14 ENSMUST00000188539.2 |
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| CDS CAA 90 bp | GTCTCCTTGATGCTGGCTTTGAGGAGTGGAACCAACTGTACCATCTaGGCCATGTCTCCCTGGGCCTGGCGCCGGGCAGCCAGGACTTCA | + |
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Preference number: 6 (lower is better) Translates to: VSLMLALRSGTNCTI*AMSPWAWRRAARTS Trigger: TGAAGTCCTGGCTGCCCGGCGCCAGGCCCAGGGAGACATGGCCAAGATGGTACAGTTGGTTCCACTCCTCAAAGCCAGCATCAAGGAGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034874.14 ENSMUST00000188539.2 |
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| CDS CCA 72 bp | AGCACTGGACCCTGCCACGTAGGGCTCAGGAAAGGTTaGCAGCCTTTGACCAGCACTGAGCGCAGGGAAAGT | + |
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Preference number: 6 (lower is better) Translates to: STGPCHVGLRKG*QPLTSTERRES Trigger: ACTTTCCCTGCGCTCAGTGCTGGTCAAAGGCTGCCAACCTTTCCTGAGCCCTACGTGGCAGGGTCCAGTGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS CAA 72 bp | CCCTGCCACGTAGGGCTCAGGAAAGGTTGGCAGCCTTaGACCAGCACTGAGCGCAGGGAAAGTCCTTTAGCC | + |
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Preference number: 6 (lower is better) Translates to: PCHVGLRKGWQP*TSTERRESPLA Trigger: GGCTAAAGGACTTTCCCTGCGCTCAGTGCTGGTCAAAGGCTGCCAACCTTTCCTGAGCCCTACGTGGCAGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS GCA 72 bp | GTACCAGCTCCCTTTCCAGTACTCAGCACTGGACCCTaGCACGTAGGGCTCAGGAAAGGTTGGCAGCCTTTG | + |
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Preference number: 6 (lower is better) Translates to: VPAPFPVLSTGP*HVGLRKGWQPL Trigger: CAAAGGCTGCCAACCTTTCCTGAGCCCTACGTGGCAGGGTCCAGTGCTGAGTACTGGAAAGGGAGCTGGTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS TCA 72 bp | CCTGAGCTACACCTTCCAGCAGGGGCACGAAGTTCTTaGTGGCTCCAGGCGCCATCACCTCTTGGTTTAGGA | + |
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Preference number: 6 (lower is better) Translates to: PELHLPAGARSS*WLQAPSPLGLG Trigger: TCCTAAACCAAGAGGTGATGGCGCCTGGAGCCATCAAGAACTTCGTGCCCCTGCTGGAAGGTGTAGCTCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034874.14 ENSMUST00000188539.2 |
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| CDS CCA 72 bp | AGTAGAGGTACCAGCTCCCTTTCCAGTACTCAGCACTaGACCCTGCCACGTAGGGCTCAGGAAAGGTTGGCA | + |
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Preference number: 6 (lower is better) Translates to: SRGTSSLSSTQH*TLPRRAQERLA Trigger: TGCCAACCTTTCCTGAGCCCTACGTGGCAGGGTCCAGTGCTGAGTACTGGAAAGGGAGCTGGTACCTCTACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS CAA 72 bp | TTGTCTTTTCTGGTCACGGCTGGGCCCAGGTCCTGCTaGAGAGGCTGGAAGTTGAAGAGGATGGGGTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: LSFLVTAGPRSC*RGWKLKRMGFS Trigger: TGAGAACCCCATCCTCTTCAACTTCCAGCCTCTCAAGCAGGACCTGGGCCCAGCCGTGACCAGAAAAGACAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS CCA 72 bp | TGGGACCCTCGCATGAGAAGAGTATCGACGCATCCTTaGGGTCCACGATGTAAACTGACTCCAAAGTGCCCA | + |
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Preference number: 6 (lower is better) Translates to: WDPRMRRVSTHP*GPRCKLTPKCP Trigger: TGGGCACTTTGGAGTCAGTTTACATCGTGGACCCCAAGGATGCGTCGATACTCTTCTCATGCGAGGGTCCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS CAA 90 bp | TGTGTGCCACTCTCCCTCCAGAAGTGGTACAGGTTTAGCCAACCATaGTCGCCAGGGGAAGGGATCTCATTGAAGGACCTAGGACTGCTA | + |
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Preference number: 6 (lower is better) Translates to: CVPLSLQKWYRFSQP*SPGEGISLKDLGLL Trigger: TAGCAGTCCTAGGTCCTTCAATGAGATCCCTTCCCCTGGCGACAATGGTTGGCTAAACCTGTACCACTTCTGGAGGGAGAGTGGCACACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS CCA 72 bp | CTTCCAGGTCTTAGTTCTGAGGAGTCGAAAGAAGTCTaGAGGCAGGTTGAGCATGGGGACACTGGTGTGGAA | + |
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Preference number: 6 (lower is better) Translates to: LPGLSSEESKEV*RQVEHGDTGVE Trigger: TTCCACACCAGTGTCCCCATGCTCAACCTGCCTCCAGACTTCTTTCGACTCCTCAGAACTAAGACCTGGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034874.14 ENSMUST00000188116.7 ENSMUST00000188539.2 |
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| CDS CAA 72 bp | CTCTCCCTCCAGAAGTGGTACAGGTTTAGCCAACCATaGTCGCCAGGGGAAGGGATCTCATTGAAGGACCTA | + |
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Preference number: 6 (lower is better) Translates to: LSLQKWYRFSQP*SPGEGISLKDL Trigger: TAGGTCCTTCAATGAGATCCCTTCCCCTGGCGACAATGGTTGGCTAAACCTGTACCACTTCTGGAGGGAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS GCA 72 bp | TTCAGCCCGCAGCATCTCCTGTACCTTCAAGTTGTGTaGCATCTCATAAAGGTTCCACTGCAGGGTCATGGA | + |
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Preference number: 6 (lower is better) Translates to: FSPQHLLYLQVV*HLIKVPLQGHG Trigger: TCCATGACCCTGCAGTGGAACCTTTATGAGATGGCACACAACTTGAAGGTACAGGAGATGCTGCGGGCTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034874.14 ENSMUST00000188539.2 |
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| CDS CCA 72 bp | ACGAAGTTCTTGATGGCTCCAGGCGCCATCACCTCTTaGTTTAGGACGATTCGGTCTTTCTTCCAGGCATCT | + |
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Preference number: 6 (lower is better) Translates to: TKFLMAPGAITS*FRTIRSFFQAS Trigger: AGATGCCTGGAAGAAAGACCGAATCGTCCTAAACCAAGAGGTGATGGCGCCTGGAGCCATCAAGAACTTCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034874.14 ENSMUST00000188539.2 |
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| CDS TCA 72 bp | TGCTTGATGCGTCTGTGTAAGACTTTGATGAAGTCCTaGGCTACACCTTCCAGCAGGGGCACGAAGTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: CLMRLCKTLMKS*ATPSSRGTKFL Trigger: CAAGAACTTCGTGCCCCTGCTGGAAGGTGTAGCTCAGGACTTCATCAAAGTCTTACACAGACGCATCAAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034874.14 ENSMUST00000188539.2 |
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| CDS GCA 72 bp | CATCCTTGGGGTCCACGATGTAAACTGACTCCAAAGTaGCCAGCTTCTCCCTGTAAATGGGGCCATACTTTT | + |
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Preference number: 6 (lower is better) Translates to: HPWGPRCKLTPK*PASPCKWGHTF Trigger: AAAAGTATGGCCCCATTTACAGGGAGAAGCTGGGCACTTTGGAGTCAGTTTACATCGTGGACCCCAAGGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS TCA 72 bp | TCAGTTTTGCATTTCAGGACAGCCGTGTCGTGGACCTaGGTCTGTACCTGTACATTGTGGCAGGTATATGCA | + |
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Preference number: 6 (lower is better) Translates to: SVLHFRTAVSWT*VCTCTLWQVYA Trigger: TGCATATACCTGCCACAATGTACAGGTACAGACTCAGGTCCACGACACGGCTGTCCTGAAATGCAAAACTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188539.2 |
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| CDS GCA 72 bp | GGAAACTCTGCATCTGATGGTAATGGATTTTCTGTGTaGCACTCTCCCTCCAGAAGTGGTACAGGTTTAGCC | + |
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Preference number: 6 (lower is better) Translates to: GNSASDGNGFSV*HSPSRSGTGLA Trigger: GGCTAAACCTGTACCACTTCTGGAGGGAGAGTGGCACACAGAAAATCCATTACCATCAGATGCAGAGTTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS CCA 72 bp | CATGGCAAAGCTAGCCACCTGTACCAAAGTCTTGGCTaGAATCTTGTAATTACGAAGCACCAGGTCATTCAC | + |
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Preference number: 6 (lower is better) Translates to: HGKASHLYQSLG*NLVITKHQVIH Trigger: GTGAATGACCTGGTGCTTCGTAATTACAAGATTCCAGCCAAGACTTTGGTACAGGTGGCTAGCTTTGCCATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS CAA 72 bp | AGTGCCCAGCTTCTCCCTGTAAATGGGGCCATACTTTaGGAAACTCTGCATCTGATGGTAATGGATTTTCTG | + |
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Preference number: 6 (lower is better) Translates to: SAQLLPVNGAIL*ETLHLMVMDFL Trigger: CAGAAAATCCATTACCATCAGATGCAGAGTTTCCAAAAGTATGGCCCCATTTACAGGGAGAAGCTGGGCACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034874.14 |
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| CDS GCA 72 bp | TCACTGATGACCCCTGAGAAATTTCCAGAATTTTGCTaGTTGATGCGTCTGTGTAAGACTTTGATGAAGTCC | + |
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Preference number: 6 (lower is better) Translates to: SLMTPEKFPEFC*LMRLCKTLMKS Trigger: GGACTTCATCAAAGTCTTACACAGACGCATCAAGCAGCAAAATTCTGGAAATTTCTCAGGGGTCATCAGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034874.14 ENSMUST00000188539.2 |
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