Pregenerated sensors for CYM (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046213Ensembl transcript IDs: ENSMUST00000029504.9
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | AGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTGGGCGATGGCCCCCAGTGTaGGCATGCTCCCCTGCTCAT | + |
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Preference number: 4 (lower is better) Translates to: RNAVFIGNVPLDKLCVCGRWPPV*ACSPAH Trigger: ATGAGCAGGGGAGCATGCTCACACTGGGGGCCATCG...CCCACACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR GCA 90 bp | GAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTGGGGTCTTGGGCCACCAGGTaGCTGTTCATCATGTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: EMLCLLGTFHLINCVCVGSWATR*LFIMLS Trigger: TGACAACATGATGAACAGGCACCTGGTGGCCCAAGA...CCCCACACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR GCA 90 bp | TTTCAAGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTCCGTCAACAGGGCAGTaGCTGTGTCCAGAACGGCAG | + |
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Preference number: 4 (lower is better) Translates to: FQEMLCLLGTFHLINCVCPSTGQ*LCPERQ Trigger: CTGCCGTTCTGGACACAGGCACTGCCCTGTTGACGG...ACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCTTGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR CCA 90 bp | TTTCAAGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTGACCACATGGCTCTaGGAGATGGCGAGAGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: FQEMLCLLGTFHLINCVCVTTWL*EMARAA Trigger: CGCTGCTCTCGCCATCTCCCAGAGCCATGTGGTCAC...ACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCTTGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR TCA 90 bp | AGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTGGGTCAGGTTCTGGAAGGTaGTGGACTTGGATGGGTCAA | + |
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Preference number: 4 (lower is better) Translates to: RNAVFIGNVPLDKLCVCGSGSGR*WTWMGQ Trigger: TTGACCCATCCAAGTCCATCACCTTCCAGAACCTGA...CCCACACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR TCA 90 bp | AGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTGGGAGTGCAGTGAGCCTATaGAGTAGGACTGATCGATGG | + |
|
Preference number: 4 (lower is better) Translates to: RNAVFIGNVPLDKLCVCGSAVSL*SRTDRW Trigger: CCATCGATCAGTCCTACTTCATAGGCTCACTGCACT...CCCACACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR GCA 90 bp | TCAAGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTTCCTCCAGCAGTCCTTaGTCCTTCAGGGTGTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: SRNAVFIGNVPLDKLCVCSSSSP*SFRVFL Trigger: GAGGAACACCCTGAAGGAGCAAGGACTGCTGGAGGA...ACACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCTTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR CCA 90 bp | TTTCAAGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTACGGAGAACAGGTCTTaGGCCACCAGGTGCCTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: FQEMLCLLGTFHLINCVCTENRS*ATRCLF Trigger: GAACAGGCACCTGGTGGCCCAAGACCTGTTCTCCGT...ACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCTTGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR TCA 90 bp | AGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTGGGCACTATCTAGATAGTTaGTCAGAGGCTCACTGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: RNAVFIGNVPLDKLCVCGHYLDS*SEAHWP Trigger: TGGCCAGTGAGCCTCTGATCAACTATCTAGATAGTG...CCCACACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR GCA 90 bp | AGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTGGGTCACTGAACTCGTACTaGTGTCTGCTCAGAAAGTCC | + |
|
Preference number: 4 (lower is better) Translates to: RNAVFIGNVPLDKLCVCGSLNSY*CLLRKS Trigger: GGACTTTCTGAGCAGACAGCAGTACGAGTTCAGTGA...CCCACACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR CCA 90 bp | TTTCAAGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTATCCTGGTGACCACATaGCTCTGGGAGATGGCGAGA | + |
|
Preference number: 4 (lower is better) Translates to: FQEMLCLLGTFHLINCVCILVTT*LWEMAR Trigger: TCTCGCCATCTCCCAGAGCCATGTGGTCACCAGGAT...ACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCTTGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR CCA 90 bp | TTTCAAGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTAGCGTAGGGTGGCAGTaGGAACTCCCTACCATGGAT | + |
|
Preference number: 4 (lower is better) Translates to: FQEMLCLLGTFHLINCVCSVGWQ*ELPTMD Trigger: ATCCATGGTAGGGAGTTCCCACTGCCACCCTACGCT...ACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCTTGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR TCA 90 bp | CAAGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTGTGTAGAACTCCCGAATaGAAACATCCCCAAGGATCC | + |
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Preference number: 4 (lower is better) Translates to: QEMLCLLGTFHLINCVCVCRTPE*KHPQGS Trigger: GGATCCTTGGGGATGTTTTCATTCGGGAGTTCTACA...CACACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR GCA 90 bp | TCAAGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTACTCGTACTGCTGTCTaGTCAGAAAGTCCTCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: SRNAVFIGNVPLDKLCVCTRTAV*SESPPA Trigger: TGCTGGAGGACTTTCTGAGCAGACAGCAGTACGAGT...ACACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCTTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR GCA 90 bp | TCAAGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTGGTTTCGGCACACTTTaGTGTTGCAGTAGACAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: SRNAVFIGNVPLDKLCVCGFGTL*CCSRQR Trigger: CCTCTGTCTACTGCAACAGCAAAGTGTGCCGAAACC...ACACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCTTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR TCA 90 bp | TTTCAAGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTCTCAGGCCCACAGTCTaGTGGGACACTACAATATCA | + |
|
Preference number: 4 (lower is better) Translates to: FQEMLCLLGTFHLINCVCLRPTV*WDTTIS Trigger: TGATATTGTAGTGTCCCATCAGACTGTGGGCCTGAG...ACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCTTGAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR GCA 90 bp | TCAAGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTTGGTCATTATGGCCTTaGACAGCTCCAATGACTTGC | + |
|
Preference number: 4 (lower is better) Translates to: SRNAVFIGNVPLDKLCVCWSLWP*TAPMTC Trigger: GCAAGTCATTGGAGCTGTGCAAGGCCATAATGACCA...ACACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCTTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR CCA 90 bp | TCAAGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTCAGTCGATGTCAAACTaGTCATTATGGCCTTGCACA | + |
|
Preference number: 4 (lower is better) Translates to: SRNAVFIGNVPLDKLCVCQSMSN*SLWPCT Trigger: TGTGCAAGGCCATAATGACCAGTTTGACATCGACTG...ACACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCTTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR TCA 90 bp | TTTCAAGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGCTCCAATGACTTGCTaGATATTGAGGATGTCTCTA | + |
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Preference number: 4 (lower is better) Translates to: FQEMLCLLGTFHLINCVCAPMTC*ILRMSL Trigger: TAGAGACATCCTCAATATTCAGCAAGTCATTGGAGC...ACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCTTGAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR CCA 90 bp | TCAAGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTTCATGTTGTCAAATATaGGTACTGAGTATTTGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: SRNAVFIGNVPLDKLCVCSCCQI*VLSIWR Trigger: CCTCCAAATACTCAGTACCCATATTTGACAACATGA...ACACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCTTGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS GCA 90 bp | CTGGCCACCACCCCGATGCGGGAGTTCTTCTCACTGAACTCGTACTaGTGTCTGCTCAGAAAGTCCTCCAGCAGTCCTTGCTCCTTCAGG | + |
|
Preference number: 5 (lower is better) Translates to: LATTPMREFFSLNSY*CLLRKSSSSPCSFR Trigger: CCTGAAGGAGCAAGGACTGCTGGAGGACTTTCTGAGCAGACAGCAGTACGAGTTCAGTGAGAAGAACTCCCGCATCGGGGTGGTGGCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS GCA 90 bp | CTGAACTCGTACTGCTGTCTGCTCAGAAAGTCCTCCAGCAGTCCTTaGTCCTTCAGGGTGTTCCTCAGAGACTTCCCTTTGTGCAGGGGG | + |
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Preference number: 5 (lower is better) Translates to: LNSYCCLLRKSSSSP*SFRVFLRDFPLCRG Trigger: CCCCCTGCACAAAGGGAAGTCTCTGAGGAACACCCTGAAGGAGCAAGGACTGCTGGAGGACTTTCTGAGCAGACAGCAGTACGAGTTCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS TCA 90 bp | GCAGTGGGAACTCCCTACCATGGATCTCAAAGACAACGGTGGGCATaGTGTCCAGCCTCCAGCAGTCGATGTCAAACTGGTCATTATGGC | + |
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Preference number: 5 (lower is better) Translates to: AVGTPYHGSQRQRWA*CPASSSRCQTGHYG Trigger: GCCATAATGACCAGTTTGACATCGACTGCTGGAGGCTGGACATCATGCCCACCGTTGTCTTTGAGATCCATGGTAGGGAGTTCCCACTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS TCA 90 bp | TTGGGCCACCAGGTGCCTGTTCATCATGTTGTCAAATATGGGTACTaGGTATTTGGAGGCAAAAGTAGGATAGGCCAGGCCCAGGATGCC | + |
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Preference number: 5 (lower is better) Translates to: LGHQVPVHHVVKYGY*VFGGKSRIGQAQDA Trigger: GGCATCCTGGGCCTGGCCTATCCTACTTTTGCCTCCAAATACTCAGTACCCATATTTGACAACATGATGAACAGGCACCTGGTGGCCCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS CCA 90 bp | ATTCTACCAGTACCATACTGGACAAACAGGGGCTTGCTCAGGTTCTaGAAGGTGATGGACTTGGATGGGTCAAAACGGTGGTGGTTTCGG | + |
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Preference number: 5 (lower is better) Translates to: ILPVPYWTNRGLLRF*KVMDLDGSKRWWFR Trigger: CCGAAACCACCACCGTTTTGACCCATCCAAGTCCATCACCTTCCAGAACCTGAGCAAGCCCCTGTTTGTCCAGTATGGTACTGGTAGAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR CAA 90 bp | GAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTGGGGGTCCTCCAGCAGTCCTaGCTCCTTCAGGGTGTTCCT | + |
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Preference number: 5 (lower is better) Translates to: EMLCLLGTFHLINCVCVGVLQQS*LLQGVP Trigger: AGGAACACCCTGAAGGAGCAAGGACTGCTGGAGGAC...CCCCACACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR CAA 90 bp | AGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTGGGATGTGGGAGCCCTGCTaGAAGCCACTGGAGCAGAAG | + |
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Preference number: 5 (lower is better) Translates to: RNAVFIGNVPLDKLCVCGMWEPC*KPLEQK Trigger: CTTCTGCTCCAGTGGCTTCAAGCAGGGCTCCCACAT...CCCACACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR CAA 90 bp | CAAGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTGAACGGAGAACAGGTCTaGGGCCACCAGGTGCCTGTT | + |
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Preference number: 5 (lower is better) Translates to: QEMLCLLGTFHLINCVCVNGEQV*GHQVPV Trigger: AACAGGCACCTGGTGGCCCAAGACCTGTTCTCCGTT...CACACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR CAA 90 bp | GAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTGGGGCTGGTCATTATGGCCTaGCACAGCTCCAATGACTTG | + |
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Preference number: 5 (lower is better) Translates to: EMLCLLGTFHLINCVCVGLVIMA*HSSNDL Trigger: CAAGTCATTGGAGCTGTGCAAGGCCATAATGACCAG...CCCCACACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR CAA 90 bp | AGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTGGGAGCCCAACACGATTGTaGGCTCTGTCAAACACACTG | + |
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Preference number: 5 (lower is better) Translates to: RNAVFIGNVPLDKLCVCGSPTRL*ALSNTL Trigger: CAGTGTGTTTGACAGAGCCAACAATCGTGTTGGGCT...CCCACACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS-3UTR CAA 90 bp | AGAAATGCTGTGTTTATTGGGAACGTTCCACTTGATAAATTGTGTGTGTGTGGGCACAGCTCCAATGACTaGCTGAATATTGAGGATGTC | + |
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Preference number: 5 (lower is better) Translates to: RNAVFIGNVPLDKLCVCGHSSND*LNIEDV Trigger: GACATCCTCAATATTCAGCAAGTCATTGGAGCTGTG...CCCACACACACACAATTTATCAAGTGGAACGTTCCCAATAAACACAGCATTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS CCA 72 bp | CCTTTGTGCAGGGGGATCCTGGTGACCACATGGCTCTaGGAGATGGCGAGAGCAGCGAGGAGCAGCACAAAG | + |
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Preference number: 6 (lower is better) Translates to: PLCRGILVTTWL*EMARAARSSTK Trigger: CTTTGTGCTGCTCCTCGCTGCTCTCGCCATCTCCCAGAGCCATGTGGTCACCAGGATCCCCCTGCACAAAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS TCA 72 bp | AAACATCCCCAAGGATCCACATGTGGGAGCCCTGCTTaGAGCCACTGGAGCAGAAGCCCTGGACCTGGTTGG | + |
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Preference number: 6 (lower is better) Translates to: KHPQGSTCGSPA*SHWSRSPGPGW Trigger: CCAACCAGGTCCAGGGCTTCTGCTCCAGTGGCTTCAAGCAGGGCTCCCACATGTGGATCCTTGGGGATGTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS GCA 72 bp | TGCTCCTTCAGGGTGTTCCTCAGAGACTTCCCTTTGTaGAGGGGGATCCTGGTGACCACATGGCTCTGGGAG | + |
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Preference number: 6 (lower is better) Translates to: CSFRVFLRDFPL*RGILVTTWLWE Trigger: CTCCCAGAGCCATGTGGTCACCAGGATCCCCCTGCACAAAGGGAAGTCTCTGAGGAACACCCTGAAGGAGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS TCA 72 bp | CACTGGCCACCACCCCGATGCGGGAGTTCTTCTCACTaGACTCGTACTGCTGTCTGCTCAGAAAGTCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: HWPPPRCGSSSH*TRTAVCSESPP Trigger: TGGAGGACTTTCTGAGCAGACAGCAGTACGAGTTCAGTGAGAAGAACTCCCGCATCGGGGTGGTGGCCAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS GCA 72 bp | ATGAAAACATCCCCAAGGATCCACATGTGGGAGCCCTaGTTGAAGCCACTGGAGCAGAAGCCCTGGACCTGG | + |
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Preference number: 6 (lower is better) Translates to: MKTSPRIHMWEP*LKPLEQKPWTW Trigger: CCAGGTCCAGGGCTTCTGCTCCAGTGGCTTCAAGCAGGGCTCCCACATGTGGATCCTTGGGGATGTTTTCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS TCA 72 bp | CCAATATCCCTGTACTGTCACAGGCACCCAGTGCAGTaGGCCTATGAAGTAGGACTGATCGATGGCCCCCAG | + |
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Preference number: 6 (lower is better) Translates to: PISLYCHRHPVQ*AYEVGLIDGPQ Trigger: CTGGGGGCCATCGATCAGTCCTACTTCATAGGCTCACTGCACTGGGTGCCTGTGACAGTACAGGGATATTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS GCA 72 bp | ACCCCGATGCGGGAGTTCTTCTCACTGAACTCGTACTaGTGTCTGCTCAGAAAGTCCTCCAGCAGTCCTTGC | + |
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Preference number: 6 (lower is better) Translates to: TPMREFFSLNSY*CLLRKSSSSPC Trigger: GCAAGGACTGCTGGAGGACTTTCTGAGCAGACAGCAGTACGAGTTCAGTGAGAAGAACTCCCGCATCGGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS TCA 72 bp | ATGTCGCCCGGTTCCTGGGTACTCAGGCCCACAGTCTaGTGGGACACTACAATATCAGAGACTGTGACAGTG | + |
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Preference number: 6 (lower is better) Translates to: MSPGSWVLRPTV*WDTTISETVTV Trigger: CACTGTCACAGTCTCTGATATTGTAGTGTCCCATCAGACTGTGGGCCTGAGTACCCAGGAACCGGGCGACAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS GCA 72 bp | GGTCAAAACGGTGGTGGTTTCGGCACACTTTGCTGTTaGAGTAGACAGAGGGTACCCAGAGTTCTGAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: GQNGGGFGTLCC*SRQRVPRVLRS Trigger: GCTCCTCAGAACTCTGGGTACCCTCTGTCTACTGCAACAGCAAAGTGTGCCGAAACCACCACCGTTTTGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS CCA 72 bp | GGGCTTGCTCAGGTTCTGGAAGGTGATGGACTTGGATaGGTCAAAACGGTGGTGGTTTCGGCACACTTTGCT | + |
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Preference number: 6 (lower is better) Translates to: GLAQVLEGDGLG*VKTVVVSAHFA Trigger: AGCAAAGTGTGCCGAAACCACCACCGTTTTGACCCATCCAAGTCCATCACCTTCCAGAACCTGAGCAAGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS TCA 72 bp | ACTCCCTACCATGGATCTCAAAGACAACGGTGGGCATaGTGTCCAGCCTCCAGCAGTCGATGTCAAACTGGT | + |
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Preference number: 6 (lower is better) Translates to: TPYHGSQRQRWA*CPASSSRCQTG Trigger: ACCAGTTTGACATCGACTGCTGGAGGCTGGACATCATGCCCACCGTTGTCTTTGAGATCCATGGTAGGGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS CAA 90 bp | GTCGATGTCAAACTGGTCATTATGGCCTTGCACAGCTCCAATGACTaGCTGAATATTGAGGATGTCTCTACCAGGCCCCGTCAACAGGGC | + |
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Preference number: 6 (lower is better) Translates to: VDVKLVIMALHSSND*LNIEDVSTRPRQQG Trigger: GCCCTGTTGACGGGGCCTGGTAGAGACATCCTCAATATTCAGCAAGTCATTGGAGCTGTGCAAGGCCATAATGACCAGTTTGACATCGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS TCA 72 bp | TGTAGATCGTTCCAAAGTACTCACTATCTAGATAGTTaGTCAGAGGCTCACTGGCCACCACCCCGATGCGGG | + |
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Preference number: 6 (lower is better) Translates to: CRSFQSTHYLDS*SEAHWPPPRCG Trigger: CCCGCATCGGGGTGGTGGCCAGTGAGCCTCTGATCAACTATCTAGATAGTGAGTACTTTGGAACGATCTACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS CAA 72 bp | TCCATTCTACCAGTACCATACTGGACAAACAGGGGCTaGCTCAGGTTCTGGAAGGTGATGGACTTGGATGGG | + |
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Preference number: 6 (lower is better) Translates to: SILPVPYWTNRG*LRFWKVMDLDG Trigger: CCCATCCAAGTCCATCACCTTCCAGAACCTGAGCAAGCCCCTGTTTGTCCAGTATGGTACTGGTAGAATGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS TCA 72 bp | TGTTGGCTCTGTCAAACACACTGTAGAACTCCCGAATaGAAACATCCCCAAGGATCCACATGTGGGAGCCCT | + |
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Preference number: 6 (lower is better) Translates to: CWLCQTHCRTPE*KHPQGSTCGSP Trigger: AGGGCTCCCACATGTGGATCCTTGGGGATGTTTTCATTCGGGAGTTCTACAGTGTGTTTGACAGAGCCAACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS CAA 72 bp | AAACTGGTCATTATGGCCTTGCACAGCTCCAATGACTaGCTGAATATTGAGGATGTCTCTACCAGGCCCCGT | + |
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Preference number: 6 (lower is better) Translates to: KLVIMALHSSND*LNIEDVSTRPR Trigger: ACGGGGCCTGGTAGAGACATCCTCAATATTCAGCAAGTCATTGGAGCTGTGCAAGGCCATAATGACCAGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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| CDS TCA 72 bp | CAGGTGCCTGTTCATCATGTTGTCAAATATGGGTACTaGGTATTTGGAGGCAAAAGTAGGATAGGCCAGGCC | + |
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Preference number: 6 (lower is better) Translates to: QVPVHHVVKYGY*VFGGKSRIGQA Trigger: GGCCTGGCCTATCCTACTTTTGCCTCCAAATACTCAGTACCCATATTTGACAACATGATGAACAGGCACCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029504.9 |
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