RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CYCS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000063694

Ensembl transcript IDs: ENSMUST00000161401.2

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTATaGCAACACCACCCGGCAATTCCAGGGCTTTATTTCTTTACACAT +
Preference number: 1 (lower is better)
Translates to: KSTCLCLPSAGIKGV*QHHPAIPGLYFFTH
Trigger: ATGTGTAAAGAAATAAAGCCCTGGAATTGCCGGGTGGTGTTGGCATACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR GCA 90 bp CACTTCCTGACTTGTAAAATCAGTGTACAGAGACTGTCCCCTTTCTaGATCTCACAGGTTTACCTTCTCCATCACTGGGTATCTTACTTG +
Preference number: 1 (lower is better)
Translates to: HFLTCKISVQRLSPF*ISQVYLLHHWVSYL
Trigger: CAAGTAAGATACCCAGTGATGGAGAAGGTAAACCTGTGAGATGCAGAAAGGGGACAGTCTCTGTACACTGATTTTACAAGTCAGGAAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR TCA 90 bp CTCAATTTCTTGTATAAAGTAAGATTTGTCACAAAGTGCTGCCTCTaGCCTGAGGCCCAGTTAATCATCTTCTACACGTCTGAAGTCACG +
Preference number: 1 (lower is better)
Translates to: LNFLYKVRFVTKCCL*PEAQLIIFYTSEVT
Trigger: CGTGACTTCAGACGTGTAGAAGATGATTAACTGGGCCTCAGGTCAGAGGCAGCACTTTGTGACAAATCTTACTTTATACAAGAAATTGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR TCA 90 bp GCCTTAGAACACAGGAGGTTCCATCTGTGTAACACAGGCCTTAGATaGTGTATTAGGTATAGATACAGAAATAACAACTCTAAGTTTGGT +
Preference number: 1 (lower is better)
Translates to: ALEHRRFHLCNTGLR*CIRYRYRNNNSKFG
Trigger: ACCAAACTTAGAGTTGTTATTTCTGTATCTATACCTAATACATCATCTAAGGCCTGTGTTACACAGATGGAACCTCCTGTGTTCTAAGGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR CCA 90 bp TTTATGTGCATTAATTCTAGATTCTCAGAAGGCAAGTGCTTAAACTaGCTGGTACTAGTTCTAGGTCAATGCCATAAATACAGCAGCCAT +
Preference number: 1 (lower is better)
Translates to: FMCINSRFSEGKCLN*LVLVLGQCHKYSSH
Trigger: ATGGCTGCTGTATTTATGGCATTGACCTAGAACTAGTACCAGCCAGTTTAAGCACTTGCCTTCTGAGAATCTAGAATTAATGCACATAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR-3UTR TCA 90 bp ATCAGGGCTGGAGAGGACTCAAGAGCACTGGCTGTTCTTCCAGAGGACTCAGCCACAAAGTGCTGCCTCTaGCCTGAGGCCCAGTTAATC +
Preference number: 2 (lower is better)
Translates to: IRAGEDSRALAVLPEDSATKCCL*PEAQLI
Trigger: GATTAACTGGGCCTCAGGTCAGAGGCAGCACTTTGT...GGCTGAGTCCTCTGGAAGAACAGCCAGTGCTCTTGAGTCCTCTCCAGCCCTGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR-3UTR TCA 90 bp ATCAGGGCTGGAGAGGACTCAAGAGCACTGGCTGTTCTTCCAGAGGACTCAGCCTGGTTAGCCATGACCTaGAAGAGGCCAGTGAACACA +
Preference number: 2 (lower is better)
Translates to: IRAGEDSRALAVLPEDSAWLAMT*KRPVNT
Trigger: TGTGTTCACTGGCCTCTTTCAGGTCATGGCTAACCA...GGCTGAGTCCTCTGGAAGAACAGCCAGTGCTCTTGAGTCCTCTCCAGCCCTGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR-3UTR GCA 90 bp GCCATTAGCTACTTCATCAACCCACATGTACTTCATGGGTTTGAAAGCCACACCGGACTCAGCCTGGACTaGGCCCACTGCAGATCCCGC +
Preference number: 2 (lower is better)
Translates to: AISYFINPHVLHGFESHTGLSLD*AHCRSR
Trigger: GCGGGATCTGCAGTGGGCGCAGTCCAGGCTGAGTCC...GGTGTGGCTTTCAAACCCATGAAGTACATGTGGGTTGATGAAGTAGCTAATGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR-3UTR CCA 90 bp TGGTCCCACTTCCTGACTTGTAAAATCAGTGTACAGAGACTGTCCCCTTTCTGCAGGACTCAAGAGCACTaGCTGTTCTTCCAGAGGACT +
Preference number: 2 (lower is better)
Translates to: WSHFLTCKISVQRLSPFCRTQEH*LFFQRT
Trigger: AGTCCTCTGGAAGAACAGCCAGTGCTCTTGAGTCCT...GCAGAAAGGGGACAGTCTCTGTACACTGATTTTACAAGTCAGGAAGTGGGACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR-3UTR TCA 90 bp GCCTTTTCACCCCCACAAAGACACCACTATCACTCATTTCCCTGCCATTCTCTATTAGTAGGTTTGAGGTaGCATGCCCCTATTTATGGA +
Preference number: 2 (lower is better)
Translates to: AFSPPQRHHYHSFPCHSLLVGLR*HAPIYG
Trigger: TCCATAAATAGGGGCATGTCACCTCAAACCTACTAA...TAGAGAATGGCAGGGAAATGAGTGATAGTGGTGTCTTTGTGGGGGTGAAAAGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR-3UTR GCA 90 bp CCATCACTGGGTATCTTACTTGAGTCTAGCCTTAGAACACAGGAGGTTCCATCTGCTCCCAGAAAAGGTTaGCTGTCAGGAAATAAGTCA +
Preference number: 2 (lower is better)
Translates to: PSLGILLESSLRTQEVPSAPRKG*LSGNKS
Trigger: TGACTTATTTCCTGACAGGCAACCTTTTCTGGGAGC...AGATGGAACCTCCTGTGTTCTAAGGCTAGACTCAAGTAAGATACCCAGTGATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR-3UTR TCA 90 bp GCCTTTTCACCCCCACAAAGACACCACTATCACTCATTTCCCTGCCATTCTCTACCAGTGAACACAAACTaGAACACATTTGAGTCTTCT +
Preference number: 2 (lower is better)
Translates to: AFSPPQRHHYHSFPCHSLPVNTN*NTFESS
Trigger: AGAAGACTCAAATGTGTTTCAGTTTGTGTTCACTGG...TAGAGAATGGCAGGGAAATGAGTGATAGTGGTGTCTTTGTGGGGGTGAAAAGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR-3UTR GCA 90 bp TGGTCCCACTTCCTGACTTGTAAAATCAGTGTACAGAGACTGTCCCCTTTCTGCAGGTTTGAGGTGACATaGCCCTATTTATGGAAAGTA +
Preference number: 2 (lower is better)
Translates to: WSHFLTCKISVQRLSPFCRFEVT*PYLWKV
Trigger: TACTTTCCATAAATAGGGGCATGTCACCTCAAACCT...GCAGAAAGGGGACAGTCTCTGTACACTGATTTTACAAGTCAGGAAGTGGGACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR-3UTR CCA 90 bp TGGTCCCACTTCCTGACTTGTAAAATCAGTGTACAGAGACTGTCCCCTTTCTGCTACCTTCTCCATCACTaGGTATCTTACTTGAGTCTA +
Preference number: 2 (lower is better)
Translates to: WSHFLTCKISVQRLSPFCYLLHH*VSYLSL
Trigger: TAGACTCAAGTAAGATACCCAGTGATGGAGAAGGTA...GCAGAAAGGGGACAGTCTCTGTACACTGATTTTACAAGTCAGGAAGTGGGACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR-3UTR TCA 90 bp TTGGCCTTCAAGTGTAGTGCACAGATATACATGCAGAGAAAACACCCATACATAAGTCCAATCTTATCTTaGGAAAGGGAGAGCCGTGGT +
Preference number: 2 (lower is better)
Translates to: LAFKCSAQIYMQRKHPYISPILS*ERESRG
Trigger: ACCACGGCTCTCCCTTTCTCAAGATAAGATTGGACT...TATGTATGGGTGTTTTCTCTGCATGTATATCTGTGCACTACACTTGAAGGCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR-3UTR TCA 90 bp TGTGCCCTGGAAAGTTGTTACAAAAACTTGGGACTCATCAAGTGTTATTACAAAGTGCTGCCTCTGACCTaGGGCCCAGTTAATCATCTT +
Preference number: 2 (lower is better)
Translates to: CALESCYKNLGLIKCYYKVLPLT*GPVNHL
Trigger: AAGATGATTAACTGGGCCTCAGGTCAGAGGCAGCAC...TTTGTAATAACACTTGATGAGTCCCAAGTTTTTGTAACAACTTTCCAGGGCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR-3UTR TCA 90 bp GCCATTAGCTACTTCATCAACCCACATGTACTTCATGGGTTTGAAAGCCACACCGAATGCAGGTGGAACTaGGAAGAAATTCATCTGATT +
Preference number: 2 (lower is better)
Translates to: AISYFINPHVLHGFESHTECRWN*EEIHLI
Trigger: AATCAGATGAATTTCTTCTCAGTTCCACCTGCATTC...GGTGTGGCTTTCAAACCCATGAAGTACATGTGGGTTGATGAAGTAGCTAATGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR-3UTR TCA 90 bp AAAATGTGCCCTGGAAAGTTGTTACAAAAACTTGGGACTCATCAAGTGTTATTACCTGAAAGAGGCCAGTaGACACAAACTGAAACACAT +
Preference number: 2 (lower is better)
Translates to: KMCPGKLLQKLGTHQVLLPERGQ*TQTETH
Trigger: ATGTGTTTCAGTTTGTGTTCACTGGCCTCTTTCAGG...TAATAACACTTGATGAGTCCCAAGTTTTTGTAACAACTTTCCAGGGCACATTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR GCA 72 bp AGCACTGGCTGTTCTTCCAGAGGACTCAGCCTGGACTaGGCCCACTGCAGATCCCGCTGTAACACCAGTCCC +
Preference number: 3 (lower is better)
Translates to: STGCSSRGLSLD*AHCRSRCNTSP
Trigger: GGGACTGGTGTTACAGCGGGATCTGCAGTGGGCGCAGTCCAGGCTGAGTCCTCTGGAAGAACAGCCAGTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR CCA 72 bp TCAAGAGCACTGGCTGTTCTTCCAGAGGACTCAGCCTaGACTGCGCCCACTGCAGATCCCGCTGTAACACCA +
Preference number: 3 (lower is better)
Translates to: SRALAVLPEDSA*TAPTADPAVTP
Trigger: TGGTGTTACAGCGGGATCTGCAGTGGGCGCAGTCCAGGCTGAGTCCTCTGGAAGAACAGCCAGTGCTCTTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR GCA 72 bp TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTATaGCAACACCACCCGGCAATTCCAGGGCTTTATTTC +
Preference number: 3 (lower is better)
Translates to: CLCLPSAGIKGV*QHHPAIPGLYF
Trigger: GAAATAAAGCCCTGGAATTGCCGGGTGGTGTTGGCATACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR CCA 72 bp CCTTTCTGCATCTCACAGGTTTACCTTCTCCATCACTaGGTATCTTACTTGAGTCTAGCCTTAGAACACAGG +
Preference number: 3 (lower is better)
Translates to: PFCISQVYLLHH*VSYLSLALEHR
Trigger: CCTGTGTTCTAAGGCTAGACTCAAGTAAGATACCCAGTGATGGAGAAGGTAAACCTGTGAGATGCAGAAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR-3UTR CAA 90 bp TGGTCCCACTTCCTGACTTGTAAAATCAGTGTACAGAGACTGTCCCCTTTCTGCTGTCCAACAAAAACATaGCTAGCCATTCATGATCTG +
Preference number: 3 (lower is better)
Translates to: WSHFLTCKISVQRLSPFCCPTKT*LAIHDL
Trigger: CAGATCATGAATGGCTAGCAATGTTTTTGTTGGACA...GCAGAAAGGGGACAGTCTCTGTACACTGATTTTACAAGTCAGGAAGTGGGACCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR-3UTR CAA 90 bp CCATCACTGGGTATCTTACTTGAGTCTAGCCTTAGAACACAGGAGGTTCCATCTATGTGCCCTGGAAAGTaGTTACAAAAACTTGGGACT +
Preference number: 3 (lower is better)
Translates to: PSLGILLESSLRTQEVPSMCPGK*LQKLGT
Trigger: AGTCCCAAGTTTTTGTAACAACTTTCCAGGGCACAT...AGATGGAACCTCCTGTGTTCTAAGGCTAGACTCAAGTAAGATACCCAGTGATGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR GCA 72 bp ATTCTAATTAAAACTGCACTGTCAAGAATAGACAGTTaGCTCCTGGTGGTTAGCCATGACCTGAAAGAGGCC +
Preference number: 3 (lower is better)
Translates to: ILIKTALSRIDS*LLVVSHDLKEA
Trigger: GGCCTCTTTCAGGTCATGGCTAACCACCAGGAGGCAACTGTCTATTCTTGACAGTGCAGTTTTAATTAGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR GCA 72 bp ACTTGTAAAATCAGTGTACAGAGACTGTCCCCTTTCTaGATCTCACAGGTTTACCTTCTCCATCACTGGGTA +
Preference number: 3 (lower is better)
Translates to: TCKISVQRLSPF*ISQVYLLHHWV
Trigger: TACCCAGTGATGGAGAAGGTAAACCTGTGAGATGCAGAAAGGGGACAGTCTCTGTACACTGATTTTACAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR-3UTR CAA 90 bp GCCATTAGCTACTTCATCAACCCACATGTACTTCATGGGTTTGAAAGCCACACCGAAAACTTTCCAAACTaGTTTCCAGATTGTCCTCAA +
Preference number: 3 (lower is better)
Translates to: AISYFINPHVLHGFESHTENFPN*FPDCPQ
Trigger: TTGAGGACAATCTGGAAACAAGTTTGGAAAGTTTTC...GGTGTGGCTTTCAAACCCATGAAGTACATGTGGGTTGATGAAGTAGCTAATGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR-3UTR CAA 90 bp CGAATTCCAGTTATGTGTGTTTCTGAGTGGGTATTTAAGGACAATTCTGATTTAAAGTCCAATCTTATCTaGAGAAAGGGAGAGCCGTGG +
Preference number: 3 (lower is better)
Translates to: RIPVMCVSEWVFKDNSDLKSNLI*RKGEPW
Trigger: CCACGGCTCTCCCTTTCTCAAGATAAGATTGGACTT...TAAATCAGAATTGTCCTTAAATACCCACTCAGAAACACACATAACTGGAATTCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR-3UTR CAA 90 bp TTGGCCTTCAAGTGTAGTGCACAGATATACATGCAGAGAAAACACCCATACATACAAACTGAAACACATTaGAGTCTTCTTGTTTCTGAG +
Preference number: 3 (lower is better)
Translates to: LAFKCSAQIYMQRKHPYIQTETH*SLLVSE
Trigger: CTCAGAAACAAGAAGACTCAAATGTGTTTCAGTTTG...TATGTATGGGTGTTTTCTCTGCATGTATATCTGTGCACTACACTTGAAGGCCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR CCA 72 bp CTGTCAGGAAATAAGTCATCATGGCTTCACCACTTCTaGGTTACAGAATCTGAGTTTATAAACTATAGGACT +
Preference number: 3 (lower is better)
Translates to: LSGNKSSWLHHF*VTESEFINYRT
Trigger: AGTCCTATAGTTTATAAACTCAGATTCTGTAACCCAGAAGTGGTGAAGCCATGATGACTTATTTCCTGACAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR CCA 72 bp ATTAATTCTAGATTCTCAGAAGGCAAGTGCTTAAACTaGCTGGTACTAGTTCTAGGTCAATGCCATAAATAC +
Preference number: 3 (lower is better)
Translates to: INSRFSEGKCLN*LVLVLGQCHKY
Trigger: GTATTTATGGCATTGACCTAGAACTAGTACCAGCCAGTTTAAGCACTTGCCTTCTGAGAATCTAGAATTAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR CAA 72 bp TCACAGGTTTACCTTCTCCATCACTGGGTATCTTACTaGAGTCTAGCCTTAGAACACAGGAGGTTCCATCTG +
Preference number: 4 (lower is better)
Translates to: SQVYLLHHWVSY*SLALEHRRFHL
Trigger: CAGATGGAACCTCCTGTGTTCTAAGGCTAGACTCAAGTAAGATACCCAGTGATGGAGAAGGTAAACCTGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2
3UTR CAA 72 bp GTATTAGGTATAGATACAGAAATAACAACTCTAAGTTaGGTCATCAGTAGGGACCCTTTACTTGGGCTCCCA +
Preference number: 4 (lower is better)
Translates to: VLGIDTEITTLS*VISRDPLLGLP
Trigger: TGGGAGCCCAAGTAAAGGGTCCCTACTGATGACCAAACTTAGAGTTGTTATTTCTGTATCTATACCTAATAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161401.2