Pregenerated sensors for CSN1S2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061388Ensembl transcript IDs: ENSMUST00000072539.12, ENSMUST00000101057.8, ENSMUST00000113279.8, ENSMUST00000197301.2
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTACAGAAGTTTGTTCCTTCATTCCTCTATTTTTGTCTGGAGACTTaGACTCAGGCTGTCAGGCTTGTCAGCAAGCAGCTCTATCCTGGA | + |
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Preference number: 1 (lower is better) Translates to: LQKFVPSFLYFCLET*TQAVRLVSKQLYPG Trigger: TCCAGGATAGAGCTGCTTGCTGACAAGCCTGACAGCCTGAGTTCAAGTCTCCAGACAAAAATAGAGGAATGAAGGAACAAACTTCTGTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| 3UTR CCA 90 bp | AGAACAGTTTACAGAAGTTTGTTCCTTCATTCCTCTATTTTTGTCTaGAGACTTGAACTCAGGCTGTCAGGCTTGTCAGCAAGCAGCTCT | + |
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Preference number: 1 (lower is better) Translates to: RTVYRSLFLHSSIFV*RLELRLSGLSASSS Trigger: AGAGCTGCTTGCTGACAAGCCTGACAGCCTGAGTTCAAGTCTCCAGACAAAAATAGAGGAATGAAGGAACAAACTTCTGTAAACTGTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| 3UTR TCA 90 bp | GAGTGTGTGTATGTAGTTTGGTACATGTATGCCTTAGAGCCTATCTaGTGTGTGGAGGTCAGAGAACAGTTTACAGAAGTTTGTTCCTTC | + |
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Preference number: 1 (lower is better) Translates to: ECVYVVWYMYALEPI*CVEVREQFTEVCSF Trigger: GAAGGAACAAACTTCTGTAAACTGTTCTCTGACCTCCACACATCAGATAGGCTCTAAGGCATACATGTACCAAACTACATACACACACTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| 3UTR GCA 90 bp | AGGTCAGTAAACCCTGCAGATTGCCAATCTAATGAGATATCTGTCTaGTATGTTACTAGAAAAAGGTTAATGAGCAATGATGTAACTTGT | + |
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Preference number: 1 (lower is better) Translates to: RSVNPADCQSNEISV*YVTRKRLMSNDVTC Trigger: ACAAGTTACATCATTGCTCATTAACCTTTTTCTAGTAACATAGCAGACAGATATCTCATTAGATTGGCAATCTGCAGGGTTTACTGACCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| 3UTR CAA 90 bp | GTCAGAGAACAGTTTACAGAAGTTTGTTCCTTCATTCCTCTATTTTaGTCTGGAGACTTGAACTCAGGCTGTCAGGCTTGTCAGCAAGCA | + |
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Preference number: 2 (lower is better) Translates to: VREQFTEVCSFIPLF*SGDLNSGCQACQQA Trigger: TGCTTGCTGACAAGCCTGACAGCCTGAGTTCAAGTCTCCAGACAAAAATAGAGGAATGAAGGAACAAACTTCTGTAAACTGTTCTCTGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| 3UTR-3UTR TCA 90 bp | GCTCTATCCTGGAAATATATAGCTGATGCATACATAGGTCTTTATAATTTCCCATTTTATGGGGAGCAATaGAATGCACAATGTCTTATG | + |
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Preference number: 2 (lower is better) Translates to: ALSWKYIADAYIGLYNFPFYGEQ*NAQCLM Trigger: CATAAGACATTGTGCATTTCATTGCTCCCCATAAAA...TGGGAAATTATAAAGACCTATGTATGCATCAGCTATATATTTCCAGGATAGAGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| 3UTR-3UTR GCA 90 bp | GCTCTATCCTGGAAATATATAGCTGATGCATACATAGGTCTTTATAATTTCCCAGTAAACCCTGCAGATTaGCAATCTAATGAGATATCT | + |
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Preference number: 2 (lower is better) Translates to: ALSWKYIADAYIGLYNFPVNPAD*QSNEIS Trigger: AGATATCTCATTAGATTGGCAATCTGCAGGGTTTAC...TGGGAAATTATAAAGACCTATGTATGCATCAGCTATATATTTCCAGGATAGAGC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| 3UTR-3UTR CAA 90 bp | GTTCTCCAGACCACAGGATGGATGAGGTCAGTAAACCCTGCAGATTGCCAATCTATAGTTTGGGGGCCATaGGAAGGGCTGGAGGGAGGA | + |
|
Preference number: 3 (lower is better) Translates to: VLQTTGWMRSVNPADCQSIVWGP*EGLEGG Trigger: TCCTCCCTCCAGCCCTTCCAATGGCCCCCAAACTAT...AGATTGGCAATCTGCAGGGTTTACTGACCTCATCCATCCTGTGGTCTGGAGAAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| 3UTR CCA 72 bp | TTAGAAAATGCCAAGCCTGACCTTAGTCTTTGCCCATaGCAATGTTCTCCAGACCACAGGATGGATGAGGTC | + |
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Preference number: 3 (lower is better) Translates to: LENAKPDLSLCP*QCSPDHRMDEV Trigger: GACCTCATCCATCCTGTGGTCTGGAGAACATTGCCATGGGCAAAGACTAAGGTCAGGCTTGGCATTTTCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| 3UTR TCA 72 bp | TTTGTTCCTTCATTCCTCTATTTTTGTCTGGAGACTTaGACTCAGGCTGTCAGGCTTGTCAGCAAGCAGCTC | + |
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Preference number: 3 (lower is better) Translates to: FVPSFLYFCLET*TQAVRLVSKQL Trigger: GAGCTGCTTGCTGACAAGCCTGACAGCCTGAGTTCAAGTCTCCAGACAAAAATAGAGGAATGAAGGAACAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| 3UTR GCA 72 bp | ACCACAGGATGGATGAGGTCAGTAAACCCTGCAGATTaGCAATCTAATGAGATATCTGTCTGCTATGTTACT | + |
|
Preference number: 3 (lower is better) Translates to: TTGWMRSVNPAD*QSNEISVCYVT Trigger: AGTAACATAGCAGACAGATATCTCATTAGATTGGCAATCTGCAGGGTTTACTGACCTCATCCATCCTGTGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| 3UTR CCA 72 bp | TCAGGCTGTCAGGCTTGTCAGCAAGCAGCTCTATCCTaGAAATATATAGCTGATGCATACATAGGTCTTTAT | + |
|
Preference number: 3 (lower is better) Translates to: SGCQACQQAALS*KYIADAYIGLY Trigger: ATAAAGACCTATGTATGCATCAGCTATATATTTCCAGGATAGAGCTGCTTGCTGACAAGCCTGACAGCCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| 3UTR CCA 72 bp | TACAGAAGTTTGTTCCTTCATTCCTCTATTTTTGTCTaGAGACTTGAACTCAGGCTGTCAGGCTTGTCAGCA | + |
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Preference number: 3 (lower is better) Translates to: YRSLFLHSSIFV*RLELRLSGLSA Trigger: TGCTGACAAGCCTGACAGCCTGAGTTCAAGTCTCCAGACAAAAATAGAGGAATGAAGGAACAAACTTCTGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| 3UTR TCA 72 bp | TATGTAGTTTGGTACATGTATGCCTTAGAGCCTATCTaGTGTGTGGAGGTCAGAGAACAGTTTACAGAAGTT | + |
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Preference number: 3 (lower is better) Translates to: YVVWYMYALEPI*CVEVREQFTEV Trigger: AACTTCTGTAAACTGTTCTCTGACCTCCACACATCAGATAGGCTCTAAGGCATACATGTACCAAACTACATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| 3UTR-3UTR CAA 90 bp | GCTCTATCCTGGAAATATATAGCTGATGCATACATAGGTCTTTATAATTTCCCATTCATTAGCAGTGCTTaGAAGAGAGAATACTGTTGG | + |
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Preference number: 3 (lower is better) Translates to: ALSWKYIADAYIGLYNFPFISSA*KREYCW Trigger: CCAACAGTATTCTCTCTTCAAAGCACTGCTAATGAA...TGGGAAATTATAAAGACCTATGTATGCATCAGCTATATATTTCCAGGATAGAGC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| CDS-3UTR TCA 90 bp | GTTCTCCAGACCACAGGATGGATGAGGTCAGTAAACCCTGCAGATTGCCAATCTTGCTTAAAGTTTTCTTaGGAGTTATCCATGGACTCC | + |
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Preference number: 4 (lower is better) Translates to: VLQTTGWMRSVNPADCQSCLKFS*ELSMDS Trigger: GGAGTCCATGGATAACTCTCAAGAAAACTTTAAGCA...AGATTGGCAATCTGCAGGGTTTACTGACCTCATCCATCCTGTGGTCTGGAGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| CDS-3UTR GCA 90 bp | GCAGAGATGAAACCCACAAGCAGACCTAACACATTCAATGGAAATGTACAAGACCTCCATCCTCTGCTTTaGAAGAGCAACGGCCAAAAG | + |
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Preference number: 4 (lower is better) Translates to: AEMKPTSRPNTFNGNVQDLHPLL*KSNGQK Trigger: CTTTTGGCCGTTGCTCTTGCAAAGCAGAGGATGGAG...GTCTTGTACATTTCCATTGAATGTGTTAGGTCTGCTTGTGGGTTTCATCTCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 |
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| 3UTR CAA 72 bp | ATTTTTGTCTGGAGACTTGAACTCAGGCTGTCAGGCTaGTCAGCAAGCAGCTCTATCCTGGAAATATATAGC | + |
|
Preference number: 4 (lower is better) Translates to: IFVWRLELRLSG*SASSSILEIYS Trigger: GCTATATATTTCCAGGATAGAGCTGCTTGCTGACAAGCCTGACAGCCTGAGTTCAAGTCTCCAGACAAAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| CDS-3UTR GCA 90 bp | CAATGGAAATGTACAAGACTAGAAGATACTCTGGAACTATTTTGGAGCATTCTGCTCCATCCTCTGCTTTaGAAGAGCAACGGCCAAAAG | + |
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Preference number: 4 (lower is better) Translates to: QWKCTRLEDTLELFWSILLHPLL*KSNGQK Trigger: CTTTTGGCCGTTGCTCTTGCAAAGCAGAGGATGGAG...CAGAATGCTCCAAAATAGTTCCAGAGTATCTTCTAGTCTTGTACATTTCCATTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR GCA 90 bp | GCTCTATCCTGGAAATATATAGCTGATGCATACATAGGTCTTTATAATTTCCCACTCCATCCTCTGCTTTaGAAGAGCAACGGCCAAAAG | + |
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Preference number: 4 (lower is better) Translates to: ALSWKYIADAYIGLYNFPLHPLL*KSNGQK Trigger: CTTTTGGCCGTTGCTCTTGCAAAGCAGAGGATGGAG...TGGGAAATTATAAAGACCTATGTATGCATCAGCTATATATTTCCAGGATAGAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| CDS-3UTR GCA 90 bp | ATACTCTGGAACTATTTTGGAGCATTCTGTTGGTTTACCACTTCTGTATCATTTCTCCATCCTCTGCTTTaGAAGAGCAACGGCCAAAAG | + |
|
Preference number: 4 (lower is better) Translates to: ILWNYFGAFCWFTTSVSFLHPLL*KSNGQK Trigger: CTTTTGGCCGTTGCTCTTGCAAAGCAGAGGATGGAG...AAATGATACAGAAGTGGTAAACCAACAGAATGCTCCAAAATAGTTCCAGAGTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| 3UTR CAA 72 bp | TTGCCTTCCAGTATAATCCTTCAGAGGCAAAACACATaGCACTCTCAGTTGATAAAACTGTGTTATTGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: LPSSIILQRQNT*HSQLIKLCYWS Trigger: GCTCCAATAACACAGTTTTATCAACTGAGAGTGCAATGTGTTTTGCCTCTGAAGGATTATACTGGAAGGCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| CDS-3UTR CCA 90 bp | ATGTACAAGACTAGAAGATACTCTGGAACTATTTTGGAGCATTCTGTTGGTTTATCACAGTTTTCTCTCTaGCACTCACACTCATGTCCA | + |
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Preference number: 4 (lower is better) Translates to: MYKTRRYSGTILEHSVGLSQFSL*HSHSCP Trigger: TGGACATGAGTGTGAGTGCCAGAGAGAAAACTGTGA...TAAACCAACAGAATGCTCCAAAATAGTTCCAGAGTATCTTCTAGTCTTGTACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072539.12 ENSMUST00000197301.2 |
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| CDS-3UTR CCA 90 bp | CATTCAATGGAAATGTACAAGACTAGAAGATACTCTGGAACTATTTTGGAGCATTCACAGTTTTCTCTCTaGCACTCACACTCATGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: HSMEMYKTRRYSGTILEHSQFSL*HSHSCP Trigger: TGGACATGAGTGTGAGTGCCAGAGAGAAAACTGTGA...ATGCTCCAAAATAGTTCCAGAGTATCTTCTAGTCTTGTACATTTCCATTGAATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072539.12 ENSMUST00000197301.2 |
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| CDS-3UTR CCA 90 bp | GAAATGTACAAGACTAGAAGATACTCTGGAACTATTTTGGAGCATTCTGTTGGTAAGCTTTACAAACTGTaGCCAGGTGATCTTGCTGTA | + |
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Preference number: 4 (lower is better) Translates to: EMYKTRRYSGTILEHSVGKLYKL*PGDLAV Trigger: TACAGCAAGATCACCTGGCCACAGTTTGTAAAGCTT...ACCAACAGAATGCTCCAAAATAGTTCCAGAGTATCTTCTAGTCTTGTACATTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| 3UTR CAA 72 bp | CCAGGCACCAACACTCTTAGAAATGTTTTAATCACGTaGATTATGTGTGTTACCACACATATAGCAGTTCAC | + |
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Preference number: 4 (lower is better) Translates to: PGTNTLRNVLIT*IMCVTTHIAVH Trigger: GTGAACTGCTATATGTGTGGTAACACACATAATCAACGTGATTAAAACATTTCTAAGAGTGTTGGTGCCTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| CDS-3UTR TCA 90 bp | CACATTCAATGGAAATGTACAAGACTAGAAGATACTCTGGAACTATTTTGGAGCTGCTTAAAGTTTTCTTaGGAGTTATCCATGGACTCC | + |
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Preference number: 4 (lower is better) Translates to: HIQWKCTRLEDTLELFWSCLKFS*ELSMDS Trigger: GGAGTCCATGGATAACTCTCAAGAAAACTTTAAGCA...GCTCCAAAATAGTTCCAGAGTATCTTCTAGTCTTGTACATTTCCATTGAATGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR TCA 90 bp | TACAAGACTAGAAGATACTCTGGAACTATTTTGGAGCATTCTGTTGGTTTACCAATTGTTGCTGAGAAATaGTGTCAGATACCTTCATGG | + |
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Preference number: 4 (lower is better) Translates to: YKTRRYSGTILEHSVGLPIVAEK*CQIPSW Trigger: CCATGAAGGTATCTGACATCATTTCTCAGCAACAAT...TGGTAAACCAACAGAATGCTCCAAAATAGTTCCAGAGTATCTTCTAGTCTTGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR TCA 90 bp | GAAATGTACAAGACTAGAAGATACTCTGGAACTATTTTGGAGCATTCTGTTGGTTGGTTGTATTGTTGCTaGGAAATGATGTCAGATACC | + |
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Preference number: 4 (lower is better) Translates to: EMYKTRRYSGTILEHSVGWLYCC*EMMSDT Trigger: GGTATCTGACATCATTTCTCAGCAACAATACAACCA...ACCAACAGAATGCTCCAAAATAGTTCCAGAGTATCTTCTAGTCTTGTACATTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR TCA 90 bp | CTAGAAGATACTCTGGAACTATTTTGGAGCATTCTGTTGGTTTACCACTTCTGTATGGTTTTCTGGTATTaGTGGAGAAGCTTTACAAAC | + |
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Preference number: 4 (lower is better) Translates to: LEDTLELFWSILLVYHFCMVFWY*WRSFTN Trigger: GTTTGTAAAGCTTCTCCATCAATACCAGAAAACCAT...ACAGAAGTGGTAAACCAACAGAATGCTCCAAAATAGTTCCAGAGTATCTTCTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR CCA 90 bp | TCTGGAACTATTTTGGAGCATTCTGTTGGTTTACCACTTCTGTATCATTTATACAAGCTTTACAAACTGTaGCCAGGTGATCTTGCTGTA | + |
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Preference number: 4 (lower is better) Translates to: SGTILEHSVGLPLLYHLYKLYKL*PGDLAV Trigger: TACAGCAAGATCACCTGGCCACAGTTTGTAAAGCTT...GTATAAATGATACAGAAGTGGTAAACCAACAGAATGCTCCAAAATAGTTCCAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR CCA 90 bp | ACACATTCAATGGAAATGTACAAGACTAGAAGATACTCTGGAACTATTTTGGAGAAGCTTTACAAACTGTaGCCAGGTGATCTTGCTGTA | + |
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Preference number: 4 (lower is better) Translates to: THSMEMYKTRRYSGTILEKLYKL*PGDLAV Trigger: TACAGCAAGATCACCTGGCCACAGTTTGTAAAGCTT...CTCCAAAATAGTTCCAGAGTATCTTCTAGTCTTGTACATTTCCATTGAATGTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR CCA 90 bp | GCTCTATCCTGGAAATATATAGCTGATGCATACATAGGTCTTTATAATTTCCCAAACTTCTTGGCTTCATaGGAGCTTCAACAGATTCCA | + |
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Preference number: 4 (lower is better) Translates to: ALSWKYIADAYIGLYNFPNFLAS*ELQQIP Trigger: TGGAATCTGTTGAAGCTCCCATGAAGCCAAGAAGTT...TGGGAAATTATAAAGACCTATGTATGCATCAGCTATATATTTCCAGGATAGAGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| CDS-3UTR TCA 90 bp | ATACTCTGGAACTATTTTGGAGCATTCTGTTGGTTTACCACTTCTGTATCATTTTGCTTAAAGTTTTCTTaGGAGTTATCCATGGACTCC | + |
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Preference number: 4 (lower is better) Translates to: ILWNYFGAFCWFTTSVSFCLKFS*ELSMDS Trigger: GGAGTCCATGGATAACTCTCAAGAAAACTTTAAGCA...AAATGATACAGAAGTGGTAAACCAACAGAATGCTCCAAAATAGTTCCAGAGTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR TCA 90 bp | ATTTTGGAGCATTCTGTTGGTTTACCACTTCTGTATCATTTATACATCTATCCCATTGTTGCTGAGAAATaGTGTCAGATACCTTCATGG | + |
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Preference number: 4 (lower is better) Translates to: ILEHSVGLPLLYHLYIYPIVAEK*CQIPSW Trigger: CCATGAAGGTATCTGACATCATTTCTCAGCAACAAT...GGGATAGATGTATAAATGATACAGAAGTGGTAAACCAACAGAATGCTCCAAAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR TCA 90 bp | ATTTTGGAGCATTCTGTTGGTTTACCACTTCTGTATCATTTATACATCTATCCCTGGTTGTATTGTTGCTaGGAAATGATGTCAGATACC | + |
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Preference number: 4 (lower is better) Translates to: ILEHSVGLPLLYHLYIYPWLYCC*EMMSDT Trigger: GGTATCTGACATCATTTCTCAGCAACAATACAACCA...GGGATAGATGTATAAATGATACAGAAGTGGTAAACCAACAGAATGCTCCAAAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR TCA 90 bp | TCTGGAACTATTTTGGAGCATTCTGTTGGTTTACCACTTCTGTATCATTTATACTGGTTGTATTGTTGCTaGGAAATGATGTCAGATACC | + |
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Preference number: 4 (lower is better) Translates to: SGTILEHSVGLPLLYHLYWLYCC*EMMSDT Trigger: GGTATCTGACATCATTTCTCAGCAACAATACAACCA...GTATAAATGATACAGAAGTGGTAAACCAACAGAATGCTCCAAAATAGTTCCAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR TCA 90 bp | ATACTCTGGAACTATTTTGGAGCATTCTGTTGGTTTACCACTTCTGTATCATTTATGGTTTTCTGGTATTaGTGGAGAAGCTTTACAAAC | + |
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Preference number: 4 (lower is better) Translates to: ILWNYFGAFCWFTTSVSFMVFWY*WRSFTN Trigger: GTTTGTAAAGCTTCTCCATCAATACCAGAAAACCAT...AAATGATACAGAAGTGGTAAACCAACAGAATGCTCCAAAATAGTTCCAGAGTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR TCA 90 bp | ACTCTGGAACTATTTTGGAGCATTCTGTTGGTTTACCACTTCTGTATCATTTATATGGTTTTCTGGTATTaGTGGAGAAGCTTTACAAAC | + |
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Preference number: 4 (lower is better) Translates to: TLELFWSILLVYHFCIIYMVFWY*WRSFTN Trigger: GTTTGTAAAGCTTCTCCATCAATACCAGAAAACCAT...ATAAATGATACAGAAGTGGTAAACCAACAGAATGCTCCAAAATAGTTCCAGAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| 3UTR CAA 72 bp | ATAATCCTTCAGAGGCAAAACACATTGCACTCTCAGTaGATAAAACTGTGTTATTGGAGCTTTAGTTGGAAT | + |
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Preference number: 4 (lower is better) Translates to: IILQRQNTLHSQ*IKLCYWSFSWN Trigger: ATTCCAACTAAAGCTCCAATAACACAGTTTTATCAACTGAGAGTGCAATGTGTTTTGCCTCTGAAGGATTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| 3UTR CAA 72 bp | CTAGAAGATACTCTGGAACTATTTTGGAGCATTCTGTaGGTTTACCACTTCTGTATCATTTATACATCTATC | + |
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Preference number: 4 (lower is better) Translates to: LEDTLELFWSIL*VYHFCIIYTSI Trigger: GATAGATGTATAAATGATACAGAAGTGGTAAACCAACAGAATGCTCCAAAATAGTTCCAGAGTATCTTCTAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR CAA 90 bp | GTTCTCCAGACCACAGGATGGATGAGGTCAGTAAACCCTGCAGATTGCCAATCTGTAGTTGGCAACTTCTaGGCTTCATGGGAGCTTCAA | + |
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Preference number: 5 (lower is better) Translates to: VLQTTGWMRSVNPADCQSVVGNF*ASWELQ Trigger: TTGAAGCTCCCATGAAGCCAAGAAGTTGCCAACTAC...AGATTGGCAATCTGCAGGGTTTACTGACCTCATCCATCCTGTGGTCTGGAGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| CDS-3UTR CAA 90 bp | CAGGCTTGTCAGCAAGCAGCTCTATCCTGGAAATATATAGCTGATGCATACATAGCTCCATCCTCTGCTTaGCAAGAGCAACGGCCAAAA | + |
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Preference number: 5 (lower is better) Translates to: QACQQAALSWKYIADAYIAPSSA*QEQRPK Trigger: TTTTGGCCGTTGCTCTTGCAAAGCAGAGGATGGAGC...TATGTATGCATCAGCTATATATTTCCAGGATAGAGCTGCTTGCTGACAAGCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| CDS-3UTR CAA 90 bp | TTGAAAAGAATGTGGTTCAGTGACATGGGAGCAGAAGTGAAGACAGTCTCAATAGCTCCATCCTCTGCTTaGCAAGAGCAACGGCCAAAA | + |
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Preference number: 5 (lower is better) Translates to: LKRMWFSDMGAEVKTVSIAPSSA*QEQRPK Trigger: TTTTGGCCGTTGCTCTTGCAAAGCAGAGGATGGAGC...TATTGAGACTGTCTTCACTTCTGCTCCCATGTCACTGAACCACATTCTTTTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 |
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| CDS-3UTR CAA 90 bp | GTTCTCCAGACCACAGGATGGATGAGGTCAGTAAACCCTGCAGATTGCCAATCTCTGCTTAAAGTTTTCTaGAGAGTTATCCATGGACTC | + |
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Preference number: 5 (lower is better) Translates to: VLQTTGWMRSVNPADCQSLLKVF*RVIHGL Trigger: GAGTCCATGGATAACTCTCAAGAAAACTTTAAGCAG...AGATTGGCAATCTGCAGGGTTTACTGACCTCATCCATCCTGTGGTCTGGAGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| CDS-3UTR CAA 90 bp | TGGTTCAGTGACATGGGAGCAGAAGTGAAGACAGTCTCAATAGTCATCAACCCTTGTGGCCAGGTGATCTaGCTGTATCGTTTCATTTTG | + |
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Preference number: 5 (lower is better) Translates to: WFSDMGAEVKTVSIVINPCGQVI*LYRFIL Trigger: CAAAATGAAACGATACAGCAAGATCACCTGGCCACA...AGGGTTGATGACTATTGAGACTGTCTTCACTTCTGCTCCCATGTCACTGAACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 |
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| CDS TCA 90 bp | CTGGCACTCACACTCATGTCCATCATTTTCTGGTTGTATTGTTGCTaGGAAATGATGTCAGATACCTTCATGGGAGCTTCAACAGATTCC | + |
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Preference number: 5 (lower is better) Translates to: LALTLMSIIFWLYCC*EMMSDTFMGASTDS Trigger: GGAATCTGTTGAAGCTCCCATGAAGGTATCTGACATCATTTCTCAGCAACAATACAACCAGAAAATGATGGACATGAGTGTGAGTGCCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072539.12 ENSMUST00000197301.2 |
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| CDS TCA 90 bp | TCACACTCATGTCCATCATTTTCTGGTTGTATTGTTGCTGAGAAATaGTGTCAGATACCTTCATGGGAGCTTCAACAGATTCCTGACTGG | + |
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Preference number: 5 (lower is better) Translates to: SHSCPSFSGCIVAEK*CQIPSWELQQIPDW Trigger: CCAGTCAGGAATCTGTTGAAGCTCCCATGAAGGTATCTGACATCATTTCTCAGCAACAATACAACCAGAAAATGATGGACATGAGTGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197301.2 |
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| CDS-3UTR CAA 90 bp | TTTGGAGCATTCTGTTGGTTTACCACTTCTGTATCATTTATACATCTATCCCAAGCTCCATCCTCTGCTTaGCAAGAGCAACGGCCAAAA | + |
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Preference number: 5 (lower is better) Translates to: FGAFCWFTTSVSFIHLSQAPSSA*QEQRPK Trigger: TTTTGGCCGTTGCTCTTGCAAAGCAGAGGATGGAGC...TTGGGATAGATGTATAAATGATACAGAAGTGGTAAACCAACAGAATGCTCCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR CAA 90 bp | TCAATGGAAATGTACAAGACTAGAAGATACTCTGGAACTATTTTGGAGCATTCTGCTCCATCCTCTGCTTaGCAAGAGCAACGGCCAAAA | + |
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Preference number: 5 (lower is better) Translates to: SMEMYKTRRYSGTILEHSAPSSA*QEQRPK Trigger: TTTTGGCCGTTGCTCTTGCAAAGCAGAGGATGGAGC...AGAATGCTCCAAAATAGTTCCAGAGTATCTTCTAGTCTTGTACATTTCCATTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS TCA 90 bp | TCACACTCATGTCCATCATTTTCTGGTTGTATTGTTGCTGAGAAATaGTGTCAGATACCTTCATGGGAGCTTCAACAGATTCCATTTGGG | + |
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Preference number: 5 (lower is better) Translates to: SHSCPSFSGCIVAEK*CQIPSWELQQIPFG Trigger: CCCAAATGGAATCTGTTGAAGCTCCCATGAAGGTATCTGACATCATTTCTCAGCAACAATACAACCAGAAAATGATGGACATGAGTGTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072539.12 |
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| CDS-3UTR CAA 90 bp | ATGTACAAGACTAGAAGATACTCTGGAACTATTTTGGAGCATTCTGTTGGTTTACTCACTGGAGATGTATaGCTCCATCCTCTGCTTTGC | + |
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Preference number: 5 (lower is better) Translates to: MYKTRRYSGTILEHSVGLLTGDV*LHPLLC Trigger: GCAAAGCAGAGGATGGAGCAATACATCTCCAGTGAG...TAAACCAACAGAATGCTCCAAAATAGTTCCAGAGTATCTTCTAGTCTTGTACAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR CAA 90 bp | ATGTGGTTCAGTGACATGGGAGCAGAAGTGAAGACAGTCTCAATAGTCATCAACTTCAACAGATTCCATTaGGGGAATGTAAATGTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: MWFSDMGAEVKTVSIVINFNRFH*GNVNVL Trigger: GAGAACATTTACATTCCCCAAATGGAATCTGTTGAA...GTTGATGACTATTGAGACTGTCTTCACTTCTGCTCCCATGTCACTGAACCACAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 |
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| CDS-3UTR CAA 90 bp | GCAGAGATGAAACCCACAAGCAGACCTAACACATTCAATGGAAATGTACAAGACTTCAACAGATTCCATTaGGGGAATGTAAATGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: AEMKPTSRPNTFNGNVQDFNRFH*GNVNVL Trigger: GAGAACATTTACATTCCCCAAATGGAATCTGTTGAA...GTCTTGTACATTTCCATTGAATGTGTTAGGTCTGCTTGTGGGTTTCATCTCTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 |
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| CDS-3UTR CAA 90 bp | GCAGAGATGAAACCCACAAGCAGACCTAACACATTCAATGGAAATGTACAAGACTTTCTGGTTGTATTGTaGCTGAGAAATGATGTCAGA | + |
|
Preference number: 5 (lower is better) Translates to: AEMKPTSRPNTFNGNVQDFLVVL*LRNDVR Trigger: TCTGACATCATTTCTCAGCAACAATACAACCAGAAA...GTCTTGTACATTTCCATTGAATGTGTTAGGTCTGCTTGTGGGTTTCATCTCTGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 |
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| CDS TCA 90 bp | TTTTACTCATGTCCATCATTTTCTGGTTGTATTGTTGCTGAGAAATaGTGTCAGATACCTTCATGGGAGCTTCAACAGATTCCATTTGGG | + |
|
Preference number: 5 (lower is better) Translates to: FYSCPSFSGCIVAEK*CQIPSWELQQIPFG Trigger: CCCAAATGGAATCTGTTGAAGCTCCCATGAAGGTATCTGACATCATTTCTCAGCAACAATACAACCAGAAAATGATGGACATGAGTAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113279.8 |
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| CDS TCA 90 bp | ATCACAGTTTTACTCATGTCCATCATTTTCTGGTTGTATTGTTGCTaGGAAATGATGTCAGATACCTTCATGGGAGCTTCAACAGATTCC | + |
|
Preference number: 5 (lower is better) Translates to: ITVLLMSIIFWLYCC*EMMSDTFMGASTDS Trigger: GGAATCTGTTGAAGCTCCCATGAAGGTATCTGACATCATTTCTCAGCAACAATACAACCAGAAAATGATGGACATGAGTAAAACTGTGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113279.8 |
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| CDS-3UTR CAA 90 bp | TTGAAAAGAATGTGGTTCAGTGACATGGGAGCAGAAGTGAAGACAGTCTCAATACATTTTCTGGTTGTATaGTTGCTGAGAAATGATGTC | + |
|
Preference number: 5 (lower is better) Translates to: LKRMWFSDMGAEVKTVSIHFLVV*LLRNDV Trigger: GACATCATTTCTCAGCAACAATACAACCAGAAAATG...TATTGAGACTGTCTTCACTTCTGCTCCCATGTCACTGAACCACATTCTTTTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 |
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| CDS-3UTR CAA 90 bp | TTGGAGCATTCTGTTGGTTTACCACTTCTGTATCATTTATACATCTATCCCAATTGTGGCCAGGTGATCTaGCTGTATCGTTTCATTTTG | + |
|
Preference number: 5 (lower is better) Translates to: LEHSVGLPLLYHLYIYPNCGQVI*LYRFIL Trigger: CAAAATGAAACGATACAGCAAGATCACCTGGCCACA...ATTGGGATAGATGTATAAATGATACAGAAGTGGTAAACCAACAGAATGCTCCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR CAA 90 bp | ACTCTGGAACTATTTTGGAGCATTCTGTTGGTTTACCACTTCTGTATCATTTATTGTGGCCAGGTGATCTaGCTGTATCGTTTCATTTTG | + |
|
Preference number: 5 (lower is better) Translates to: TLELFWSILLVYHFCIIYCGQVI*LYRFIL Trigger: CAAAATGAAACGATACAGCAAGATCACCTGGCCACA...ATAAATGATACAGAAGTGGTAAACCAACAGAATGCTCCAAAATAGTTCCAGAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR CAA 90 bp | ACAAGACTAGAAGATACTCTGGAACTATTTTGGAGCATTCTGTTGGTTTACCACTTTCTGGTTGTATTGTaGCTGAGAAATGATGTCAGA | + |
|
Preference number: 5 (lower is better) Translates to: TRLEDTLELFWSILLVYHFLVVL*LRNDVR Trigger: TCTGACATCATTTCTCAGCAACAATACAACCAGAAA...GTGGTAAACCAACAGAATGCTCCAAAATAGTTCCAGAGTATCTTCTAGTCTTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR CAA 90 bp | ATTTTGGAGCATTCTGTTGGTTTACCACTTCTGTATCATTTATACATCTATCCCCTGCTTAAAGTTTTCTaGAGAGTTATCCATGGACTC | + |
|
Preference number: 5 (lower is better) Translates to: ILEHSVGLPLLYHLYIYPLLKVF*RVIHGL Trigger: GAGTCCATGGATAACTCTCAAGAAAACTTTAAGCAG...GGGATAGATGTATAAATGATACAGAAGTGGTAAACCAACAGAATGCTCCAAAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR CAA 90 bp | ACACATTCAATGGAAATGTACAAGACTAGAAGATACTCTGGAACTATTTTGGAGCTGCTTAAAGTTTTCTaGAGAGTTATCCATGGACTC | + |
|
Preference number: 5 (lower is better) Translates to: THSMEMYKTRRYSGTILELLKVF*RVIHGL Trigger: GAGTCCATGGATAACTCTCAAGAAAACTTTAAGCAG...CTCCAAAATAGTTCCAGAGTATCTTCTAGTCTTGTACATTTCCATTGAATGTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR CAA 90 bp | TCAATGGAAATGTACAAGACTAGAAGATACTCTGGAACTATTTTGGAGCATTCTCTGCTTAAAGTTTTCTaGAGAGTTATCCATGGACTC | + |
|
Preference number: 5 (lower is better) Translates to: SMEMYKTRRYSGTILEHSLLKVF*RVIHGL Trigger: GAGTCCATGGATAACTCTCAAGAAAACTTTAAGCAG...AGAATGCTCCAAAATAGTTCCAGAGTATCTTCTAGTCTTGTACATTTCCATTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR CAA 90 bp | GAAATGTACAAGACTAGAAGATACTCTGGAACTATTTTGGAGCATTCTGTTGGTTTTCTGGTTGTATTGTaGCTGAGAAATGATGTCAGA | + |
|
Preference number: 5 (lower is better) Translates to: EMYKTRRYSGTILEHSVGFLVVL*LRNDVR Trigger: TCTGACATCATTTCTCAGCAACAATACAACCAGAAA...ACCAACAGAATGCTCCAAAATAGTTCCAGAGTATCTTCTAGTCTTGTACATTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR CAA 90 bp | TACAAGACTAGAAGATACTCTGGAACTATTTTGGAGCATTCTGTTGGTTTACCACATTTTCTGGTTGTATaGTTGCTGAGAAATGATGTC | + |
|
Preference number: 5 (lower is better) Translates to: YKTRRYSGTILEHSVGLPHFLVV*LLRNDV Trigger: GACATCATTTCTCAGCAACAATACAACCAGAAAATG...TGGTAAACCAACAGAATGCTCCAAAATAGTTCCAGAGTATCTTCTAGTCTTGTA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS-3UTR CAA 90 bp | GCTCTATCCTGGAAATATATAGCTGATGCATACATAGGTCTTTATAATTTCCCATTCAACAGATTCCATTaGGGGAATGTAAATGTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: ALSWKYIADAYIGLYNFPFNRFH*GNVNVL Trigger: GAGAACATTTACATTCCCCAAATGGAATCTGTTGAA...TGGGAAATTATAAAGACCTATGTATGCATCAGCTATATATTTCCAGGATAGAGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| CDS-3UTR CAA 90 bp | ACTCTGGAACTATTTTGGAGCATTCTGTTGGTTTACCACTTCTGTATCATTTATCATTTTCTGGTTGTATaGTTGCTGAGAAATGATGTC | + |
|
Preference number: 5 (lower is better) Translates to: TLELFWSILLVYHFCIIYHFLVV*LLRNDV Trigger: GACATCATTTCTCAGCAACAATACAACCAGAAAATG...ATAAATGATACAGAAGTGGTAAACCAACAGAATGCTCCAAAATAGTTCCAGAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS GCA 72 bp | CTCCTCACTGGAGATGTATTGCTCCATCCTCTGCTTTaGAAGAGCAACGGCCAAAAGGCAAGTAAGAATGAT | + |
|
Preference number: 6 (lower is better) Translates to: LLTGDVLLHPLL*KSNGQKASKND Trigger: ATCATTCTTACTTGCCTTTTGGCCGTTGCTCTTGCAAAGCAGAGGATGGAGCAATACATCTCCAGTGAGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000072539.12 ENSMUST00000101057.8 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS CAA 72 bp | TGGGTAATAGCTCCACGGGGTCATGGTTTTCTGGTATaGATGGAGAAGCTTTACAAACTGTGGCCAGGTGAT | + |
|
Preference number: 6 (lower is better) Translates to: WVIAPRGHGFLV*MEKLYKLWPGD Trigger: ATCACCTGGCCACAGTTTGTAAAGCTTCTCCATCAATACCAGAAAACCATGACCCCGTGGAGCTATTACCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS CAA 90 bp | AAAGTTTTCTTGAGAGTTATCCATGGACTCCTCACTGGAGATGTATaGCTCCATCCTCTGCTTTGCAAGAGCAACGGCCAAAAGGCAAGT | + |
|
Preference number: 6 (lower is better) Translates to: KVFLRVIHGLLTGDV*LHPLLCKSNGQKAS Trigger: ACTTGCCTTTTGGCCGTTGCTCTTGCAAAGCAGAGGATGGAGCAATACATCTCCAGTGAGGAGTCCATGGATAACTCTCAAGAAAACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000072539.12 ENSMUST00000101057.8 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS CAA 90 bp | CTCTCTGGCACTCACACTCATGTCCATCATTTTCTGGTTGTATTGTaGCTGAGAAATGATGTCAGATACCTTCATGGGAGCTTCAACAGA | + |
|
Preference number: 6 (lower is better) Translates to: LSGTHTHVHHFLVVL*LRNDVRYLHGSFNR Trigger: TCTGTTGAAGCTCCCATGAAGGTATCTGACATCATTTCTCAGCAACAATACAACCAGAAAATGATGGACATGAGTGTGAGTGCCAGAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072539.12 ENSMUST00000197301.2 |
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| CDS CAA 72 bp | GGCACTCACACTCATGTCCATCATTTTCTGGTTGTATaGTTGCTGAGAAATGATGTCAGATACCTTCATGGG | + |
|
Preference number: 6 (lower is better) Translates to: GTHTHVHHFLVV*LLRNDVRYLHG Trigger: CCCATGAAGGTATCTGACATCATTTCTCAGCAACAATACAACCAGAAAATGATGGACATGAGTGTGAGTGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072539.12 ENSMUST00000197301.2 |
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| CDS CAA 90 bp | TTTCTCTCTGGCACTCACACTCATGTCCATCATTTTCTGGTTGTATaGTTGCTGAGAAATGATGTCAGATACCTTCATGGGAGCTTCAAC | + |
|
Preference number: 6 (lower is better) Translates to: FLSGTHTHVHHFLVV*LLRNDVRYLHGSFN Trigger: GTTGAAGCTCCCATGAAGGTATCTGACATCATTTCTCAGCAACAATACAACCAGAAAATGATGGACATGAGTGTGAGTGCCAGAGAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072539.12 ENSMUST00000197301.2 |
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| CDS CAA 72 bp | GTCAGATACCTTCATGGGAGCTTCAACAGATTCCATTaGGGGAATGTAAATGTTCTCTACAGTTTCCTGACT | + |
|
Preference number: 6 (lower is better) Translates to: VRYLHGSFNRFH*GNVNVLYSFLT Trigger: AGTCAGGAAACTGTAGAGAACATTTACATTCCCCAAATGGAATCTGTTGAAGCTCCCATGAAGGTATCTGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 |
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| CDS CAA 72 bp | ACTCACACTCATGTCCATCATTTTCTGGTTGTATTGTaGCTGAGAAATGATGTCAGATACCTTCATGGGAGC | + |
|
Preference number: 6 (lower is better) Translates to: THTHVHHFLVVL*LRNDVRYLHGS Trigger: GCTCCCATGAAGGTATCTGACATCATTTCTCAGCAACAATACAACCAGAAAATGATGGACATGAGTGTGAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072539.12 ENSMUST00000197301.2 |
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| CDS CAA 72 bp | ACTTCTTGGCTTCATGGGAGCTTCAACAGATTCCATTaGGGGAATGTAAATGTTCTCTACAGTTTCCTGACT | + |
|
Preference number: 6 (lower is better) Translates to: TSWLHGSFNRFH*GNVNVLYSFLT Trigger: AGTCAGGAAACTGTAGAGAACATTTACATTCCCCAAATGGAATCTGTTGAAGCTCCCATGAAGCCAAGAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101057.8 |
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| CDS CAA 90 bp | TGGCCAGGTGATCTTGCTGTATCGTTTCATTTTGTTCATGTAGTCTaGGATGTTCTTACTTTCTTCAGTCATCACAGTTTTCTCTCTGGC | + |
|
Preference number: 6 (lower is better) Translates to: WPGDLAVSFHFVHVV*DVLTFFSHHSFLSG Trigger: GCCAGAGAGAAAACTGTGATGACTGAAGAAAGTAAGAACATCCAAGACTACATGAACAAAATGAAACGATACAGCAAGATCACCTGGCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072539.12 ENSMUST00000197301.2 |
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| CDS CAA 90 bp | AGTCATCACAGTTTTACTCATGTCCATCATTTTCTGGTTGTATTGTaGCTGAGAAATGATGTCAGATACCTTCATGGGAGCTTCAACAGA | + |
|
Preference number: 6 (lower is better) Translates to: SHHSFTHVHHFLVVL*LRNDVRYLHGSFNR Trigger: TCTGTTGAAGCTCCCATGAAGGTATCTGACATCATTTCTCAGCAACAATACAACCAGAAAATGATGGACATGAGTAAAACTGTGATGACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113279.8 |
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| CDS CAA 90 bp | TTCAGTCATCACAGTTTTACTCATGTCCATCATTTTCTGGTTGTATaGTTGCTGAGAAATGATGTCAGATACCTTCATGGGAGCTTCAAC | + |
|
Preference number: 6 (lower is better) Translates to: FSHHSFTHVHHFLVV*LLRNDVRYLHGSFN Trigger: GTTGAAGCTCCCATGAAGGTATCTGACATCATTTCTCAGCAACAATACAACCAGAAAATGATGGACATGAGTAAAACTGTGATGACTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113279.8 |
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| CDS CAA 90 bp | TGGCCAGGTGATCTTGCTGTATCGTTTCATTTTGTTCATGTAGTCTaGGATGTTCTTACTTTCTTCAGTCATCACAGTTTTACTCATGTC | + |
|
Preference number: 6 (lower is better) Translates to: WPGDLAVSFHFVHVV*DVLTFFSHHSFTHV Trigger: GACATGAGTAAAACTGTGATGACTGAAGAAAGTAAGAACATCCAAGACTACATGAACAAAATGAAACGATACAGCAAGATCACCTGGCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113279.8 |
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| CDS TCA 72 bp | AAAAAGGCCACATCCATATTCTGCTTAAAGTTTTCTTaGGAGTTATCCATGGACTCCTCACTGGAGATGTAT | + |
|
Preference number: 6 (lower is better) Translates to: KKATSIFCLKFS*ELSMDSSLEMY Trigger: ATACATCTCCAGTGAGGAGTCCATGGATAACTCTCAAGAAAACTTTAAGCAGAATATGGATGTGGCCTTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000072539.12 ENSMUST00000101057.8 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS TCA 72 bp | TGTCCATCATTTTCTGGTTGTATTGTTGCTGAGAAATaGTGTCAGATACCTTCATGGGAGCTTCAACAGATT | + |
|
Preference number: 6 (lower is better) Translates to: CPSFSGCIVAEK*CQIPSWELQQI Trigger: AATCTGTTGAAGCTCCCATGAAGGTATCTGACATCATTTCTCAGCAACAATACAACCAGAAAATGATGGACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072539.12 ENSMUST00000113279.8 ENSMUST00000197301.2 |
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| CDS CAA 72 bp | CACAGTTTTACTCATGTCCATCATTTTCTGGTTGTATaGTTGCTGAGAAATGATGTCAGATACCTTCATGGG | + |
|
Preference number: 6 (lower is better) Translates to: HSFTHVHHFLVV*LLRNDVRYLHG Trigger: CCCATGAAGGTATCTGACATCATTTCTCAGCAACAATACAACCAGAAAATGATGGACATGAGTAAAACTGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113279.8 |
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