RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CRK (Mus musculus)

Ensembl gene IDs: ENSMUSG00000017776

Ensembl transcript IDs: ENSMUST00000017920.14, ENSMUST00000093115.4, ENSMUST00000108425.8, ENSMUST00000108426.8, ENSMUST00000147718.2

Found 135 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCCCACTGGGTAATATTCACACAGTGCATGATTACGTCATGGGAGTaGGGAACAGTCTGCTGCCACTTGACAGTATGGATTCAGGATGAA +
Preference number: 1 (lower is better)
Translates to: PHWVIFTQCMITSWE*GTVCCHLTVWIQDE
Trigger: TTCATCCTGAATCCATACTGTCAAGTGGCAGCAGACTGTTCCCCACTCCCATGACGTAATCATGCACTGTGTGAATATTACCCAGTGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR CCA 90 bp ATGCAACCCCACTGGGTAATATTCACACAGTGCATGATTACGTCATaGGAGTGGGGAACAGTCTGCTGCCACTTGACAGTATGGATTCAG +
Preference number: 1 (lower is better)
Translates to: MQPHWVIFTQCMITS*EWGTVCCHLTVWIQ
Trigger: CTGAATCCATACTGTCAAGTGGCAGCAGACTGTTCCCCACTCCCATGACGTAATCATGCACTGTGTGAATATTACCCAGTGGGGTTGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR CCA 90 bp AAGTTGCCTAAGCTGACCTTGAACTCCTGGGTTCAAGGAATCCCATaGCTTCAGAAGTCCTGGAATTATCAGCACAGGCCACCATACCTT +
Preference number: 1 (lower is better)
Translates to: KLPKLTLNSWVQGIP*LQKSWNYQHRPPYL
Trigger: AAGGTATGGTGGCCTGTGCTGATAATTCCAGGACTTCTGAAGCCATGGGATTCCTTGAACCCAGGAGTTCAAGGTCAGCTTAGGCAACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108425.8
3UTR CCA 90 bp GAGTCAGATGTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTCAGGGCCTTCGGAAGAGCAGTCAATGCTCTTA +
Preference number: 1 (lower is better)
Translates to: ESDVITDGCEPPCGC*DLNSGPSEEQSMLL
Trigger: TAAGAGCATTGACTGCTCTTCCGAAGGCCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGACATCTGACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147718.2
3UTR TCA 90 bp AACAGATTGTTCCATCTGTCAGCAAACTGTCGAGCTATACTCAGCTaGAGTCCTCATCGGGATTCTGTTGATCCAGCAGACGGACATGTG +
Preference number: 1 (lower is better)
Translates to: NRLFHLSANCRAILS*SPHRDSVDPADGHV
Trigger: CACATGTCCGTCTGCTGGATCAACAGAATCCCGATGAGGACTTCAGCTGAGTATAGCTCGACAGTTTGCTGACAGATGGAACAATCTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108425.8
ENSMUST00000108426.8
3UTR GCA 90 bp GTATCCACAGCAGCATTCTCACAACAGAGAATGCAGTCTCAAGTTTaGAGAGTTCCCTATCACACTGCCATCTTACACTCACAGAGACCC +
Preference number: 1 (lower is better)
Translates to: VSTAAFSQQRMQSQV*RVPYHTAILHSQRP
Trigger: GGGTCTCTGTGAGTGTAAGATGGCAGTGTGATAGGGAACTCTGCAAACTTGAGACTGCATTCTCTGTTGTGAGAATGCTGCTGTGGATAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108425.8
3UTR CCA 90 bp ATTACGTCATGGGAGTGGGGAACAGTCTGCTGCCACTTGACAGTATaGATTCAGGATGAAAACAGAACCTCTGAAGAAATCAGGGTCAGC +
Preference number: 1 (lower is better)
Translates to: ITSWEWGTVCCHLTV*IQDENRTSEEIRVS
Trigger: GCTGACCCTGATTTCTTCAGAGGTTCTGTTTTCATCCTGAATCCATACTGTCAAGTGGCAGCAGACTGTTCCCCACTCCCATGACGTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR GCA 90 bp TTCACACAGTGCATGATTACGTCATGGGAGTGGGGAACAGTCTGCTaGCACTTGACAGTATGGATTCAGGATGAAAACAGAACCTCTGAA +
Preference number: 1 (lower is better)
Translates to: FTQCMITSWEWGTVC*HLTVWIQDENRTSE
Trigger: TTCAGAGGTTCTGTTTTCATCCTGAATCCATACTGTCAAGTGGCAGCAGACTGTTCCCCACTCCCATGACGTAATCATGCACTGTGTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR CCA 90 bp GTATACAGGAGTCTTGCTAAGTTGCCTAAGCTGACCTTGAACTCCTaGGTTCAAGGAATCCCATGGCTTCAGAAGTCCTGGAATTATCAG +
Preference number: 1 (lower is better)
Translates to: VYRSLAKLPKLTLNS*VQGIPWLQKSWNYQ
Trigger: CTGATAATTCCAGGACTTCTGAAGCCATGGGATTCCTTGAACCCAGGAGTTCAAGGTCAGCTTAGGCAACTTAGCAAGACTCCTGTATAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108425.8
3UTR TCA 90 bp GAGGGCAAAGTTTGGCCCTTGATACCTTCTATAGGATACAGTAAGTaGTTGGTCCTTCCACTCCAAGTAGAATCTGAGAACTTTGAGCAT +
Preference number: 1 (lower is better)
Translates to: EGKVWPLIPSIGYSK*LVLPLQVESENFEH
Trigger: ATGCTCAAAGTTCTCAGATTCTACTTGGAGTGGAAGGACCAATCACTTACTGTATCCTATAGAAGGTATCAAGGGCCAAACTTTGCCCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR GCA 90 bp AGTATAAGGTGTTTCTATTGGTCACCTACACCAGAGACCAGCAAGTaGCTTTATCACCTGAAAGTCTCATGTTACAGTCTAAAGAAACCC +
Preference number: 1 (lower is better)
Translates to: SIRCFYWSPTPETSK*LYHLKVSCYSLKKP
Trigger: GGGTTTCTTTAGACTGTAACATGAGACTTTCAGGTGATAAAGGCACTTGCTGGTCTCTGGTGTAGGTGACCAATAGAAACACCTTATACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR TCA 90 bp ATTGACTGTGCATTTGGATTTACACAATCTATGCTAACTGAAAAGTaGAACAAGCAGTCAGGTGCAGTAAGTCACGTGCTACAAACCTGT +
Preference number: 1 (lower is better)
Translates to: IDCAFGFTQSMLTEK*NKQSGAVSHVLQTC
Trigger: ACAGGTTTGTAGCACGTGACTTACTGCACCTGACTGCTTGTTTCACTTTTCAGTTAGCATAGATTGTGTAAATCCAAATGCACAGTCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR TCA 90 bp ACTTGCTATTTTTGGAAGATATTTGTAAGAAGTCCTTTGATCTCTTaGGGTCCAATAACTGCTACACCCAGCCAAATCCAACCAAACAGT +
Preference number: 1 (lower is better)
Translates to: TCYFWKIFVRSPLIS*GPITATPSQIQPNS
Trigger: ACTGTTTGGTTGGATTTGGCTGGGTGTAGCAGTTATTGGACCTCAAGAGATCAAAGGACTTCTTACAAATATCTTCCAAAAATAGCAAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR TCA 90 bp GGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGGCCTTCGGAAGAGAATGCTCTTAACCGCTaGGCCATCTGTCCAGCCCAA +
Preference number: 2 (lower is better)
Translates to: GCEPPCGCWDLNSGPSEENALNR*AICPAQ
Trigger: TTGGGCTGGACAGATGGCTCAGCGGTTAAGAGCATT...CTCTTCCGAAGGCCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147718.2
3UTR-3UTR CCA 90 bp AAGTATAAGGTGTTTCTATTGGTCACCTACACCAGAGACCAGCAAGTGCCTTTACCTACGATGCCCCCTTaGGGGAAGGCAGAGAGCTGG +
Preference number: 2 (lower is better)
Translates to: KYKVFLLVTYTRDQQVPLPTMPP*GKAESW
Trigger: CCAGCTCTCTGCCTTCCCCCAAGGGGGCATCGTAGG...TAAAGGCACTTGCTGGTCTCTGGTGTAGGTGACCAATAGAAACACCTTATACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR TCA 90 bp CAGTGCATGATTACGTCATGGGAGTGGGGAACAGTCTGCTGCCACTTGACAGTACAGCTTTCCACAGGTTaGTCTGTTTTGCCCAAAAGA +
Preference number: 2 (lower is better)
Translates to: QCMITSWEWGTVCCHLTVQLSTG*SVLPKR
Trigger: TCTTTTGGGCAAAACAGATCAACCTGTGGAAAGCTG...TACTGTCAAGTGGCAGCAGACTGTTCCCCACTCCCATGACGTAATCATGCACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR TCA 90 bp ACTGCCATCTTACACTCACAGAGACCCATTTCCAGGCAAGTCTGGTGTTCTCTGTGTGTGAATGGGAAGTaGCCTCGTTTGCCATTACAC +
Preference number: 2 (lower is better)
Translates to: TAILHSQRPISRQVWCSLCVNGK*PRLPLH
Trigger: GTGTAATGGCAAACGAGGTCACTTCCCATTCACACA...CAGAGAACACCAGACTTGCCTGGAAATGGGTCTCTGTGAGTGTAAGATGGCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108425.8
3UTR-3UTR GCA 90 bp CCCATTAGGATACTAGCAATCAGGAAAAATGGCCCTGCCAGATCTGTCCCATCAGTCATGGTCCATAAATaGAAATGCAACCCCACTGGG +
Preference number: 2 (lower is better)
Translates to: PIRILAIRKNGPARSVPSVMVHK*KCNPTG
Trigger: CCCAGTGGGGTTGCATTTGCATTTATGGACCATGAC...TGATGGGACAGATCTGGCAGGGCCATTTTTCCTGATTGCTAGTATCCTAATGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR CAA 90 bp CAGTGCATGATTACGTCATGGGAGTGGGGAACAGTCTGCTGCCACTaGACAGTATGGATTCAGGATGAAAACAGAACCTCTGAAGAAATC +
Preference number: 2 (lower is better)
Translates to: QCMITSWEWGTVCCH*TVWIQDENRTSEEI
Trigger: GATTTCTTCAGAGGTTCTGTTTTCATCCTGAATCCATACTGTCAAGTGGCAGCAGACTGTTCCCCACTCCCATGACGTAATCATGCACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR CAA 90 bp AGGTATTTAGTATACAGGAGTCTTGCTAAGTTGCCTAAGCTGACCTaGAACTCCTGGGTTCAAGGAATCCCATGGCTTCAGAAGTCCTGG +
Preference number: 2 (lower is better)
Translates to: RYLVYRSLAKLPKLT*NSWVQGIPWLQKSW
Trigger: CCAGGACTTCTGAAGCCATGGGATTCCTTGAACCCAGGAGTTCAAGGTCAGCTTAGGCAACTTAGCAAGACTCCTGTATACTAAATACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108425.8
3UTR-3UTR CCA 90 bp ACTGCCATCTTACACTCACAGAGACCCATTTCCAGGCAAGTCTGGTGTTCTCTGTGTATAGATGGCAATTaGGGGGAAACAGATTGTTCC +
Preference number: 2 (lower is better)
Translates to: TAILHSQRPISRQVWCSLCIDGN*GETDCS
Trigger: GGAACAATCTGTTTCCCCCCAATTGCCATCTATACA...CAGAGAACACCAGACTTGCCTGGAAATGGGTCTCTGTGAGTGTAAGATGGCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108425.8
3UTR-3UTR CCA 90 bp TGTGCTAGTCACTTCAGTCACATGATTTGGTATATGTTCAATGAATGCAAATTCCCTACGATGCCCCCTTaGGGGAAGGCAGAGAGCTGG +
Preference number: 2 (lower is better)
Translates to: CASHFSHMIWYMFNECKFPTMPP*GKAESW
Trigger: CCAGCTCTCTGCCTTCCCCCAAGGGGGCATCGTAGG...GAATTTGCATTCATTGAACATATACCAAATCATGTGACTGAAGTGACTAGCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR TCA 90 bp ACACGTGCTCAGCAATGTGCTAGTCACTTCAGTCACATGATTTGGTATATGTTCCAGTCTGCTGCCACTTaGCAGTATGGATTCAGGATG +
Preference number: 2 (lower is better)
Translates to: TRAQQCASHFSHMIWYMFQSAAT*QYGFRM
Trigger: CATCCTGAATCCATACTGTCAAGTGGCAGCAGACTG...GAACATATACCAAATCATGTGACTGAAGTGACTAGCACATTGCTGAGCACGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR TCA 90 bp TTTGAAACAAGGTCTCACTTTCTAACTCCTGACTGTTCTGGAAGTAGCTCTGTAGTCCCATCAGTAAGGTaGGTCTTGAGCTGTGGTAGC +
Preference number: 2 (lower is better)
Translates to: FETRSHFLTPDCSGSSSVVPSVR*VLSCGS
Trigger: GCTACCACAGCTCAAGACTCACCTTACTGATGGGAC...TACAGAGCTACTTCCAGAACAGTCAGGAGTTAGAAAGTGAGACCTTGTTTCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR CCA 90 bp TGTCAGCAAACTGTCGAGCTATACTCAGCTGAAGTCCTCATCGGGATTCTGTTGTGTATAGATGGCAATTaGGGGGAAACAGATTGTTCC +
Preference number: 2 (lower is better)
Translates to: CQQTVELYSAEVLIGILLCIDGN*GETDCS
Trigger: GGAACAATCTGTTTCCCCCCAATTGCCATCTATACA...CAACAGAATCCCGATGAGGACTTCAGCTGAGTATAGCTCGACAGTTTGCTGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108425.8
ENSMUST00000108426.8
3UTR-3UTR CCA 90 bp AAGTATAAGGTGTTTCTATTGGTCACCTACACCAGAGACCAGCAAGTGCCTTTATGCATGATTACGTCATaGGAGTGGGGAACAGTCTGC +
Preference number: 2 (lower is better)
Translates to: KYKVFLLVTYTRDQQVPLCMITS*EWGTVC
Trigger: GCAGACTGTTCCCCACTCCCATGACGTAATCATGCA...TAAAGGCACTTGCTGGTCTCTGGTGTAGGTGACCAATAGAAACACCTTATACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR TCA 90 bp TTTGAAACAAGGTCTCACTTTCTAACTCCTGACTGTTCTGGAAGTAGCTCTGTAAGACCAGGTTGGTCTTaGACTCAGAGATCCACTTGC +
Preference number: 2 (lower is better)
Translates to: FETRSHFLTPDCSGSSSVRPGWS*TQRSTC
Trigger: GCAAGTGGATCTCTGAGTTCAAGACCAACCTGGTCT...TACAGAGCTACTTCCAGAACAGTCAGGAGTTAGAAAGTGAGACCTTGTTTCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR CCA 90 bp AACTTGAGCCACAGCTCCAATACTGGAGTGAGTAGTGTCAATGTGGAGTGCACTTGCCACTTGACAGTATaGATTCAGGATGAAAACAGA +
Preference number: 2 (lower is better)
Translates to: NLSHSSNTGVSSVNVECTCHLTV*IQDENR
Trigger: TCTGTTTTCATCCTGAATCCATACTGTCAAGTGGCA...AGTGCACTCCACATTGACACTACTCACTCCAGTATTGGAGCTGTGGCTCAAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108425.8
3UTR-3UTR TCA 90 bp CCCATTAGGATACTAGCAATCAGGAAAAATGGCCCTGCCAGATCTGTCCCATCATATGGTAAATACAAGTaGGAATGGAGTAGTTCAGTC +
Preference number: 2 (lower is better)
Translates to: PIRILAIRKNGPARSVPSYGKYK*EWSSSV
Trigger: GACTGAACTACTCCATTCTCACTTGTATTTACCATA...TGATGGGACAGATCTGGCAGGGCCATTTTTCCTGATTGCTAGTATCCTAATGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR CCA 90 bp ATGTTTCCTAACAGTAGTGTCATACTTTCTAGAGATCTTATAGCATACCCACCAATTACGTCATGGGAGTaGGGAACAGTCTGCTGCCAC +
Preference number: 2 (lower is better)
Translates to: MFPNSSVILSRDLIAYPPITSWE*GTVCCH
Trigger: GTGGCAGCAGACTGTTCCCCACTCCCATGACGTAAT...TGGTGGGTATGCTATAAGATCTCTAGAAAGTATGACACTACTGTTAGGAAACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108425.8
3UTR-3UTR CCA 90 bp CCCATTAGGATACTAGCAATCAGGAAAAATGGCCCTGCCAGATCTGTCCCATCAGTCATACAATGGTCATaGTCCATAAATGCAAATGCA +
Preference number: 2 (lower is better)
Translates to: PIRILAIRKNGPARSVPSVIQWS*SINANA
Trigger: TGCATTTGCATTTATGGACCATGACCATTGTATGAC...TGATGGGACAGATCTGGCAGGGCCATTTTTCCTGATTGCTAGTATCCTAATGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR CCA 90 bp ACACGTGCTCAGCAATGTGCTAGTCACTTCAGTCACATGATTTGGTATATGTTCAAACCCTATAATTTGTaGCCTCAGAGGCCTAGTCTC +
Preference number: 2 (lower is better)
Translates to: TRAQQCASHFSHMIWYMFKPYNL*PQRPSL
Trigger: GAGACTAGGCCTCTGAGGCCACAAATTATAGGGTTT...GAACATATACCAAATCATGTGACTGAAGTGACTAGCACATTGCTGAGCACGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR TCA 90 bp AGCATTCAAATCAGTTGTGACGATGATTTTCTAAGAAGTGTTTTCGATGCCATAGTCCCATCAGTAAGGTaGGTCTTGAGCTGTGGTAGC +
Preference number: 2 (lower is better)
Translates to: SIQISCDDDFLRSVFDAIVPSVR*VLSCGS
Trigger: GCTACCACAGCTCAAGACTCACCTTACTGATGGGAC...TATGGCATCGAAAACACTTCTTAGAAAATCATCGTCACAACTGATTTGAATGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR TCA 90 bp AAAAGATCCCAGGTAACAGAATGCTTATATAAACTAGACTGCTTTGACACCTGTTCATCGGGATTCTGTTaGTCCAGCAGACGGACATGT +
Preference number: 2 (lower is better)
Translates to: KRSQVTECLYKLDCFDTCSSGFC*SSRRTC
Trigger: ACATGTCCGTCTGCTGGATCAACAGAATCCCGATGA...ACAGGTGTCAAAGCAGTCTAGTTTATATAAGCATTCTGTTACCTGGGATCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108425.8
ENSMUST00000108426.8
3UTR-3UTR TCA 90 bp GACGATGATTTTCTAAGAAGTGTTTTCGATGCCATAATTTCAGGAACAGATTCTACTGACCACCTATTATaGGCTCAGAACTGGGCCAAC +
Preference number: 2 (lower is better)
Translates to: DDDFLRSVFDAIISGTDSTDHLL*AQNWAN
Trigger: GTTGGCCCAGTTCTGAGCTCATAATAGGTGGTCAGT...AGAATCTGTTCCTGAAATTATGGCATCGAAAACACTTCTTAGAAAATCATCGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR GCA 90 bp TTTGAAACAAGGTCTCACTTTCTAACTCCTGACTGTTCTGGAAGTAGCTCTGTACAGGTTGATCTGTTTTaGCCAAAAGAAAGGAGGCAA +
Preference number: 2 (lower is better)
Translates to: FETRSHFLTPDCSGSSSVQVDLF*PKERRQ
Trigger: TTGCCTCCTTTCTTTTGGGCAAAACAGATCAACCTG...TACAGAGCTACTTCCAGAACAGTCAGGAGTTAGAAAGTGAGACCTTGTTTCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR GCA 90 bp CAATTTCAGTTTACTTTGCTCTGTGACAATGTACATACGCATCTGACTAGGATTGTCATGGTCCATAAATaGAAATGCAACCCCACTGGG +
Preference number: 2 (lower is better)
Translates to: QFQFTLLCDNVHTHLTRIVMVHK*KCNPTG
Trigger: CCCAGTGGGGTTGCATTTGCATTTATGGACCATGAC...AATCCTAGTCAGATGCGTATGTACATTGTCACAGAGCAAAGTAAACTGAAATTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR GCA 90 bp TTTGAAACAAGGTCTCACTTTCTAACTCCTGACTGTTCTGGAAGTAGCTCTGTACACGCTTCTGCACTCTaGTCATTCTTTCGTACAAAA +
Preference number: 2 (lower is better)
Translates to: FETRSHFLTPDCSGSSSVHASAL*SFFRTK
Trigger: TTTTGTACGAAAGAATGAGCAGAGTGCAGAAGCGTG...TACAGAGCTACTTCCAGAACAGTCAGGAGTTAGAAAGTGAGACCTTGTTTCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR GCA 90 bp GACGATGATTTTCTAAGAAGTGTTTTCGATGCCATAATTTCAGGAACAGATTCTACTCAGAGATCCACTTaGCTTTGTCTCCCAAGGGCT +
Preference number: 2 (lower is better)
Translates to: DDDFLRSVFDAIISGTDSTQRST*LCLPRA
Trigger: AGCCCTTGGGAGACAAAGGCAAGTGGATCTCTGAGT...AGAATCTGTTCCTGAAATTATGGCATCGAAAACACTTCTTAGAAAATCATCGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR TCA 90 bp CAATTTCAGTTTACTTTGCTCTGTGACAATGTACATACGCATCTGACTAGGATTAATCAGGGTCAGCAGTaGGTAACATTCTTTTCCTGC +
Preference number: 2 (lower is better)
Translates to: QFQFTLLCDNVHTHLTRINQGQQ*VTFFSC
Trigger: GCAGGAAAAGAATGTTACTCACTGCTGACCCTGATT...AATCCTAGTCAGATGCGTATGTACATTGTCACAGAGCAAAGTAAACTGAAATTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR TCA 90 bp TTTGAAACAAGGTCTCACTTTCTAACTCCTGACTGTTCTGGAAGTAGCTCTGTATTAGGGAAACAGGATTaGCTGTGCATTTGGATTTAC +
Preference number: 2 (lower is better)
Translates to: FETRSHFLTPDCSGSSSVLGKQD*LCIWIY
Trigger: GTAAATCCAAATGCACAGTCAATCCTGTTTCCCTAA...TACAGAGCTACTTCCAGAACAGTCAGGAGTTAGAAAGTGAGACCTTGTTTCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR GCA 90 bp GGACAAAGGAGAACCCAAATGAAGGCAATTTATAGTGTAATATACTTCACCAACGTGCTCTGTACATCCTaGTTCTCATCTGGAATGAAG +
Preference number: 2 (lower is better)
Translates to: GQRRTQMKAIYSVIYFTNVLCTS*FSSGMK
Trigger: CTTCATTCCAGATGAGAAGCAGGATGTACAGAGCAC...GTTGGTGAAGTATATTACACTATAAATTGCCTTCATTTGGGTTCTCCTTTGTCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR CCA 90 bp TACACACGTGCTCAGCAATGTGCTAGTCACTTCAGTCACATGATTTGGTATATGGTCATACAATGGTCATaGTCCATAAATGCAAATGCA +
Preference number: 2 (lower is better)
Translates to: YTRAQQCASHFSHMIWYMVIQWS*SINANA
Trigger: TGCATTTGCATTTATGGACCATGACCATTGTATGAC...CATATACCAAATCATGTGACTGAAGTGACTAGCACATTGCTGAGCACGTGTGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR CCA 90 bp CAATTTCAGTTTACTTTGCTCTGTGACAATGTACATACGCATCTGACTAGGATTTGTATAGATGGCAATTaGGGGGAAACAGATTGTTCC +
Preference number: 2 (lower is better)
Translates to: QFQFTLLCDNVHTHLTRICIDGN*GETDCS
Trigger: GGAACAATCTGTTTCCCCCCAATTGCCATCTATACA...AATCCTAGTCAGATGCGTATGTACATTGTCACAGAGCAAAGTAAACTGAAATTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR CAA 90 bp TATTTTTCTAAAATGAGGTTCAAAGCAAAGTATAAGGTGTTTCTATaGGTCACCTACACCAGAGACCAGCAAGTGCCTTTATCACCTGAA +
Preference number: 2 (lower is better)
Translates to: YFSKMRFKAKYKVFL*VTYTRDQQVPLSPE
Trigger: TTCAGGTGATAAAGGCACTTGCTGGTCTCTGGTGTAGGTGACCAATAGAAACACCTTATACTTTGCTTTGAACCTCATTTTAGAAAAATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR GCA 90 bp TGTGCTAGTCACTTCAGTCACATGATTTGGTATATGTTCAATGAATGCAAATTCCAGGTTGATCTGTTTTaGCCAAAAGAAAGGAGGCAA +
Preference number: 2 (lower is better)
Translates to: CASHFSHMIWYMFNECKFQVDLF*PKERRQ
Trigger: TTGCCTCCTTTCTTTTGGGCAAAACAGATCAACCTG...GAATTTGCATTCATTGAACATATACCAAATCATGTGACTGAAGTGACTAGCACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR GCA 90 bp TGTGCTAGTCACTTCAGTCACATGATTTGGTATATGTTCAATGAATGCAAATTCCACGCTTCTGCACTCTaGTCATTCTTTCGTACAAAA +
Preference number: 2 (lower is better)
Translates to: CASHFSHMIWYMFNECKFHASAL*SFFRTK
Trigger: TTTTGTACGAAAGAATGAGCAGAGTGCAGAAGCGTG...GAATTTGCATTCATTGAACATATACCAAATCATGTGACTGAAGTGACTAGCACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR GCA 90 bp TTTGAAACAAGGTCTCACTTTCTAACTCCTGACTGTTCTGGAAGTAGCTCTGTAAAGAAGTGTTTTCGATaGCATAATTTCAGGAACAGA +
Preference number: 2 (lower is better)
Translates to: FETRSHFLTPDCSGSSSVKKCFR*HNFRNR
Trigger: TCTGTTCCTGAAATTATGGCATCGAAAACACTTCTT...TACAGAGCTACTTCCAGAACAGTCAGGAGTTAGAAAGTGAGACCTTGTTTCAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR TCA 90 bp CAATTTCAGTTTACTTTGCTCTGTGACAATGTACATACGCATCTGACTAGGATTTATGGTAAATACAAGTaGGAATGGAGTAGTTCAGTC +
Preference number: 2 (lower is better)
Translates to: QFQFTLLCDNVHTHLTRIYGKYK*EWSSSV
Trigger: GACTGAACTACTCCATTCTCACTTGTATTTACCATA...AATCCTAGTCAGATGCGTATGTACATTGTCACAGAGCAAAGTAAACTGAAATTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR TCA 90 bp GGACAAAGGAGAACCCAAATGAAGGCAATTTATAGTGTAATATACTTCACCAACAGTTTATCCACTGAGTaGATCCAATACTGGCTTAAA +
Preference number: 2 (lower is better)
Translates to: GQRRTQMKAIYSVIYFTNSLSTE*IQYWLK
Trigger: TTTAAGCCAGTATTGGATTCACTCAGTGGATAAACT...GTTGGTGAAGTATATTACACTATAAATTGCCTTCATTTGGGTTCTCCTTTGTCC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR CAA 90 bp TGCAGAAGTGATTATATAAAACATAGCAGCCAATTTCAGTTTACTTaGCTCTGTGACAATGTACATACGCATCTGACTAGGATTATAGCA +
Preference number: 2 (lower is better)
Translates to: CRSDYIKHSSQFQFT*LCDNVHTHLTRIIA
Trigger: TGCTATAATCCTAGTCAGATGCGTATGTACATTGTCACAGAGCAAAGTAAACTGAAATTGGCTGCTATGTTTTATATAATCACTTCTGCA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR TCA 90 bp TGTGCTAGTCACTTCAGTCACATGATTTGGTATATGTTCAATGAATGCAAATTCCTTAAAGCTATGCACTaGATAAAGTGCTCTGTACAT +
Preference number: 2 (lower is better)
Translates to: CASHFSHMIWYMFNECKFLKAMH*IKCSVH
Trigger: ATGTACAGAGCACTTTATTCAGTGCATAGCTTTAAG...GAATTTGCATTCATTGAACATATACCAAATCATGTGACTGAAGTGACTAGCACA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR GCA 90 bp CAATTTCAGTTTACTTTGCTCTGTGACAATGTACATACGCATCTGACTAGGATTAAGAAGTGTTTTCGATaGCATAATTTCAGGAACAGA +
Preference number: 2 (lower is better)
Translates to: QFQFTLLCDNVHTHLTRIKKCFR*HNFRNR
Trigger: TCTGTTCCTGAAATTATGGCATCGAAAACACTTCTT...AATCCTAGTCAGATGCGTATGTACATTGTCACAGAGCAAAGTAAACTGAAATTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR GCA 72 bp GACGGGTGGTATGGACACACAGAAACGCATCATCTCTaGTGCTGTTCCTCCCCTAGGACTTTCCCTGAGCAA +
Preference number: 3 (lower is better)
Translates to: DGWYGHTETHHL*CCSSPRTFPEQ
Trigger: TTGCTCAGGGAAAGTCCTAGGGGAGGAACAGCAGCAGAGATGATGCGTTTCTGTGTGTCCATACCACCCGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108425.8
3UTR-3UTR CAA 90 bp ACTGCCATCTTACACTCACAGAGACCCATTTCCAGGCAAGTCTGGTGTTCTCTGAACTCAGAGATCCACTaGCCTTTGTCTCCCAAGGGC +
Preference number: 3 (lower is better)
Translates to: TAILHSQRPISRQVWCSLNSEIH*PLSPKG
Trigger: GCCCTTGGGAGACAAAGGCAAGTGGATCTCTGAGTT...CAGAGAACACCAGACTTGCCTGGAAATGGGTCTCTGTGAGTGTAAGATGGCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108425.8
3UTR GCA 72 bp GATGTCATTACAGATGGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTCAGGGCCTTCGGAAGAGCAG +
Preference number: 3 (lower is better)
Translates to: DVITDGCEPPCG*WDLNSGPSEEQ
Trigger: CTGCTCTTCCGAAGGCCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGACATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147718.2
3UTR-3UTR CAA 90 bp TTTGAAACAAGGTCTCACTTTCTAACTCCTGACTGTTCTGGAAGTAGCTCTGTAACCTACGATGCCCCCTaGGGGGAAGGCAGAGAGCTG +
Preference number: 3 (lower is better)
Translates to: FETRSHFLTPDCSGSSSVTYDAP*GEGREL
Trigger: CAGCTCTCTGCCTTCCCCCAAGGGGGCATCGTAGGT...TACAGAGCTACTTCCAGAACAGTCAGGAGTTAGAAAGTGAGACCTTGTTTCAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR CCA 72 bp AAGCTGACCTTGAACTCCTGGGTTCAAGGAATCCCATaGCTTCAGAAGTCCTGGAATTATCAGCACAGGCCA +
Preference number: 3 (lower is better)
Translates to: KLTLNSWVQGIP*LQKSWNYQHRP
Trigger: TGGCCTGTGCTGATAATTCCAGGACTTCTGAAGCCATGGGATTCCTTGAACCCAGGAGTTCAAGGTCAGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108425.8
3UTR CCA 72 bp AGTCTTGCTAAGTTGCCTAAGCTGACCTTGAACTCCTaGGTTCAAGGAATCCCATGGCTTCAGAAGTCCTGG +
Preference number: 3 (lower is better)
Translates to: SLAKLPKLTLNS*VQGIPWLQKSW
Trigger: CCAGGACTTCTGAAGCCATGGGATTCCTTGAACCCAGGAGTTCAAGGTCAGCTTAGGCAACTTAGCAAGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108425.8
3UTR TCA 72 bp TTCCATCTGTCAGCAAACTGTCGAGCTATACTCAGCTaGAGTCCTCATCGGGATTCTGTTGATCCAGCAGAC +
Preference number: 3 (lower is better)
Translates to: FHLSANCRAILS*SPHRDSVDPAD
Trigger: GTCTGCTGGATCAACAGAATCCCGATGAGGACTTCAGCTGAGTATAGCTCGACAGTTTGCTGACAGATGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108425.8
ENSMUST00000108426.8
3UTR CCA 72 bp CACTGGGTAATATTCACACAGTGCATGATTACGTCATaGGAGTGGGGAACAGTCTGCTGCCACTTGACAGTA +
Preference number: 3 (lower is better)
Translates to: HWVIFTQCMITS*EWGTVCCHLTV
Trigger: TACTGTCAAGTGGCAGCAGACTGTTCCCCACTCCCATGACGTAATCATGCACTGTGTGAATATTACCCAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR CAA 90 bp CAATTTCAGTTTACTTTGCTCTGTGACAATGTACATACGCATCTGACTAGGATTACCTACGATGCCCCCTaGGGGGAAGGCAGAGAGCTG +
Preference number: 3 (lower is better)
Translates to: QFQFTLLCDNVHTHLTRITYDAP*GEGREL
Trigger: CAGCTCTCTGCCTTCCCCCAAGGGGGCATCGTAGGT...AATCCTAGTCAGATGCGTATGTACATTGTCACAGAGCAAAGTAAACTGAAATTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR CAA 90 bp AGCACAGGCCACCATACCTTGAAACTTGAGCCACAGCTCCAATACTGGAGTGAGCTTAGGGAAACAGGATaGACTGTGCATTTGGATTTA +
Preference number: 3 (lower is better)
Translates to: STGHHTLKLEPQLQYWSELRETG*TVHLDL
Trigger: TAAATCCAAATGCACAGTCAATCCTGTTTCCCTAAG...CTCACTCCAGTATTGGAGCTGTGGCTCAAGTTTCAAGGTATGGTGGCCTGTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108425.8
3UTR-3UTR CAA 90 bp TACACACGTGCTCAGCAATGTGCTAGTCACTTCAGTCACATGATTTGGTATATGCTCATCGGGATTCTGTaGATCCAGCAGACGGACATG +
Preference number: 3 (lower is better)
Translates to: YTRAQQCASHFSHMIWYMLIGIL*IQQTDM
Trigger: CATGTCCGTCTGCTGGATCAACAGAATCCCGATGAG...CATATACCAAATCATGTGACTGAAGTGACTAGCACATTGCTGAGCACGTGTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108425.8
3UTR GCA 72 bp GCAGCATTCTCACAACAGAGAATGCAGTCTCAAGTTTaGAGAGTTCCCTATCACACTGCCATCTTACACTCA +
Preference number: 3 (lower is better)
Translates to: AAFSQQRMQSQV*RVPYHTAILHS
Trigger: TGAGTGTAAGATGGCAGTGTGATAGGGAACTCTGCAAACTTGAGACTGCATTCTCTGTTGTGAGAATGCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108425.8
3UTR CCA 72 bp GTAATATTCACACAGTGCATGATTACGTCATGGGAGTaGGGAACAGTCTGCTGCCACTTGACAGTATGGATT +
Preference number: 3 (lower is better)
Translates to: VIFTQCMITSWE*GTVCCHLTVWI
Trigger: AATCCATACTGTCAAGTGGCAGCAGACTGTTCCCCACTCCCATGACGTAATCATGCACTGTGTGAATATTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR CAA 90 bp TGTCAGCAAACTGTCGAGCTATACTCAGCTGAAGTCCTCATCGGGATTCTGTTGACACCTGTAAGAAAATaGTATAGATGGCAATTGGGG +
Preference number: 3 (lower is better)
Translates to: CQQTVELYSAEVLIGILLTPVRK*YRWQLG
Trigger: CCCCAATTGCCATCTATACAATTTTCTTACAGGTGT...CAACAGAATCCCGATGAGGACTTCAGCTGAGTATAGCTCGACAGTTTGCTGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108425.8
ENSMUST00000108426.8
3UTR-3UTR CAA 90 bp AAGCAAAGTATAAGGTGTTTCTATTGGTCACCTACACCAGAGACCAGCAAGTGCTCAGCTTTCCACAGGTaGATCTGTTTTGCCCAAAAG +
Preference number: 3 (lower is better)
Translates to: KQSIRCFYWSPTPETSKCSAFHR*ICFAQK
Trigger: CTTTTGGGCAAAACAGATCAACCTGTGGAAAGCTGA...GCACTTGCTGGTCTCTGGTGTAGGTGACCAATAGAAACACCTTATACTTTGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR CAA 90 bp AAGTATAAGGTGTTTCTATTGGTCACCTACACCAGAGACCAGCAAGTGCCTTTATGCCTTTTATACAACTaGCACATGATGCAGAGGGCA +
Preference number: 3 (lower is better)
Translates to: KYKVFLLVTYTRDQQVPLCLLYN*HMMQRA
Trigger: TGCCCTCTGCATCATGTGCAAGTTGTATAAAAGGCA...TAAAGGCACTTGCTGGTCTCTGGTGTAGGTGACCAATAGAAACACCTTATACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR CAA 90 bp AAAAGATCCCAGGTAACAGAATGCTTATATAAACTAGACTGCTTTGACACCTGTCTCATCGGGATTCTGTaGATCCAGCAGACGGACATG +
Preference number: 3 (lower is better)
Translates to: KRSQVTECLYKLDCFDTCLIGIL*IQQTDM
Trigger: CATGTCCGTCTGCTGGATCAACAGAATCCCGATGAG...ACAGGTGTCAAAGCAGTCTAGTTTATATAAGCATTCTGTTACCTGGGATCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108425.8
ENSMUST00000108426.8
3UTR TCA 72 bp GTTTGGCCCTTGATACCTTCTATAGGATACAGTAAGTaGTTGGTCCTTCCACTCCAAGTAGAATCTGAGAAC +
Preference number: 3 (lower is better)
Translates to: VWPLIPSIGYSK*LVLPLQVESEN
Trigger: GTTCTCAGATTCTACTTGGAGTGGAAGGACCAATCACTTACTGTATCCTATAGAAGGTATCAAGGGCCAAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR GCA 72 bp TGTTTCTATTGGTCACCTACACCAGAGACCAGCAAGTaGCTTTATCACCTGAAAGTCTCATGTTACAGTCTA +
Preference number: 3 (lower is better)
Translates to: CFYWSPTPETSK*LYHLKVSCYSL
Trigger: TAGACTGTAACATGAGACTTTCAGGTGATAAAGGCACTTGCTGGTCTCTGGTGTAGGTGACCAATAGAAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR CAA 90 bp TTTGAAACAAGGTCTCACTTTCTAACTCCTGACTGTTCTGGAAGTAGCTCTGTATCAGCTTTCCACAGGTaGATCTGTTTTGCCCAAAAG +
Preference number: 3 (lower is better)
Translates to: FETRSHFLTPDCSGSSSVSAFHR*ICFAQK
Trigger: CTTTTGGGCAAAACAGATCAACCTGTGGAAAGCTGA...TACAGAGCTACTTCCAGAACAGTCAGGAGTTAGAAAGTGAGACCTTGTTTCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR CCA 72 bp ATCTTACACTCACAGAGACCCATTTCCAGGCAAGTCTaGTGTTCTCTGTTCACAATGTGCTTCCTTTATATT +
Preference number: 3 (lower is better)
Translates to: ILHSQRPISRQV*CSLFTMCFLYI
Trigger: AATATAAAGGAAGCACATTGTGAACAGAGAACACCAGACTTGCCTGGAAATGGGTCTCTGTGAGTGTAAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108425.8
3UTR-3UTR CAA 90 bp ACACGTGCTCAGCAATGTGCTAGTCACTTCAGTCACATGATTTGGTATATGTTCACACCTGTAAGAAAATaGTATAGATGGCAATTGGGG +
Preference number: 3 (lower is better)
Translates to: TRAQQCASHFSHMIWYMFTPVRK*YRWQLG
Trigger: CCCCAATTGCCATCTATACAATTTTCTTACAGGTGT...GAACATATACCAAATCATGTGACTGAAGTGACTAGCACATTGCTGAGCACGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR CAA 90 bp CAATTTCAGTTTACTTTGCTCTGTGACAATGTACATACGCATCTGACTAGGATTTGCAGAGGGCAAAGTTaGGCCCTTGATACCTTCTAT +
Preference number: 3 (lower is better)
Translates to: QFQFTLLCDNVHTHLTRICRGQS*ALDTFY
Trigger: ATAGAAGGTATCAAGGGCCAAACTTTGCCCTCTGCA...AATCCTAGTCAGATGCGTATGTACATTGTCACAGAGCAAAGTAAACTGAAATTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR TCA 72 bp GCATTTGGATTTACACAATCTATGCTAACTGAAAAGTaGAACAAGCAGTCAGGTGCAGTAAGTCACGTGCTA +
Preference number: 3 (lower is better)
Translates to: AFGFTQSMLTEK*NKQSGAVSHVL
Trigger: TAGCACGTGACTTACTGCACCTGACTGCTTGTTTCACTTTTCAGTTAGCATAGATTGTGTAAATCCAAATGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR TCA 72 bp ACATTCACCATCACACAAGGCTTAGGGAAACAGGATTaGCTGTGCATTTGGATTTACACAATCTATGCTAAC +
Preference number: 3 (lower is better)
Translates to: TFTITQGLGKQD*LCIWIYTIYAN
Trigger: GTTAGCATAGATTGTGTAAATCCAAATGCACAGTCAATCCTGTTTCCCTAAGCCTTGTGTGATGGTGAATGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR-3UTR CAA 90 bp CAATTTCAGTTTACTTTGCTCTGTGACAATGTACATACGCATCTGACTAGGATTACACCTGTAAGAAAATaGTATAGATGGCAATTGGGG +
Preference number: 3 (lower is better)
Translates to: QFQFTLLCDNVHTHLTRITPVRK*YRWQLG
Trigger: CCCCAATTGCCATCTATACAATTTTCTTACAGGTGT...AATCCTAGTCAGATGCGTATGTACATTGTCACAGAGCAAAGTAAACTGAAATTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR GCA 90 bp ACAGTGCATGATTACGTCATGGGAGTGGGGAACAGTCTGCTGCCACTTGACAGTCCGTGCCGCTGGCCCTaGAATAGCGCCACCGCCTCC +
Preference number: 4 (lower is better)
Translates to: TVHDYVMGVGNSLLPLDSPCRWP*NSATAS
Trigger: GGAGGCGGTGGCGCTATTGCAGGGCCAGCGGCACGG...ACTGTCAAGTGGCAGCAGACTGTTCCCCACTCCCATGACGTAATCATGCACTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR CCA 90 bp GATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGGCCTTCGGAACTCCGGCCCACCCAGTaGCTGTGGGTGGGAACCCTC +
Preference number: 4 (lower is better)
Translates to: DGCEPPCGCWDLNSGPSELRPTQ*LWVGTL
Trigger: GAGGGTTCCCACCCACAGCCACTGGGTGGGCCGGAG...TTCCGAAGGCCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147718.2
CDS-3UTR TCA 90 bp AACTTGAGCCACAGCTCCAATACTGGAGTGAGTAGTGTCAATGTGGAGTGCACTACTCCCGGCGGAGGCTaGGCGGGCGACGGAGGCACT +
Preference number: 4 (lower is better)
Translates to: NLSHSSNTGVSSVNVECTTPGGG*AGDGGT
Trigger: AGTGCCTCCGTCGCCCGCTCAGCCTCCGCCGGGAGT...AGTGCACTCCACATTGACACTACTCACTCCAGTATTGGAGCTGTGGCTCAAGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108425.8
CDS-3UTR TCA 90 bp GAGTCAGATGTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGACTCCCGGCGGAGGCTaGGCGGGCGACGGAGGCACT +
Preference number: 4 (lower is better)
Translates to: ESDVITDGCEPPCGCWDLTPGGG*AGDGGT
Trigger: AGTGCCTCCGTCGCCCGCTCAGCCTCCGCCGGGAGT...CAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGACATCTGACTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147718.2
CDS-3UTR GCA 90 bp TCTGTCAGCAAACTGTCGAGCTATACTCAGCTGAAGTCCTCATCGGGATTCTGTCCGTGCCGCTGGCCCTaGAATAGCGCCACCGCCTCC +
Preference number: 4 (lower is better)
Translates to: SVSKLSSYTQLKSSSGFCPCRWP*NSATAS
Trigger: GGAGGCGGTGGCGCTATTGCAGGGCCAGCGGCACGG...ACAGAATCCCGATGAGGACTTCAGCTGAGTATAGCTCGACAGTTTGCTGACAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108425.8
ENSMUST00000108426.8
CDS-3UTR GCA 90 bp GGTAATATTCACACAGTGCATGATTACGTCATGGGAGTGGGGAACAGTCTGCTGAGTCCCCGGGGCTGGTaGTCGAGTCCCGCACCAGGA +
Preference number: 4 (lower is better)
Translates to: GNIHTVHDYVMGVGNSLLSPRGW*SSPAPG
Trigger: TCCTGGTGCGGGACTCGAGCACCAGCCCCGGGGACT...CAGCAGACTGTTCCCCACTCCCATGACGTAATCATGCACTGTGTGAATATTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR CCA 90 bp CCATCTGTCAGCAAACTGTCGAGCTATACTCAGCTGAAGTCCTCATCGGGATTCAACACCCCGTGCCGCTaGCCCTGCAATAGCGCCACC +
Preference number: 4 (lower is better)
Translates to: PSVSKLSSYTQLKSSSGFNTPCR*PCNSAT
Trigger: GGTGGCGCTATTGCAGGGCCAGCGGCACGGGGTGTT...GAATCCCGATGAGGACTTCAGCTGAGTATAGCTCGACAGTTTGCTGACAGATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108425.8
ENSMUST00000108426.8
CDS-3UTR CCA 90 bp ACAGTGCATGATTACGTCATGGGAGTGGGGAACAGTCTGCTGCCACTTGACAGTCTCCTATTCGGAGCCTaGAGGGACTCACTCCCGGCG +
Preference number: 4 (lower is better)
Translates to: TVHDYVMGVGNSLLPLDSLLFGA*RDSLPA
Trigger: CGCCGGGAGTGAGTCCCTCCAGGCTCCGAATAGGAG...ACTGTCAAGTGGCAGCAGACTGTTCCCCACTCCCATGACGTAATCATGCACTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR CCA 90 bp ACCATGTGGTTGCTGGGATTTGAACTCAGGGCCTTCGGAAGAGCAGTCAATGCTCCCACCCAGTGGCTGTaGGTGGGAACCCTCCTGGTT +
Preference number: 4 (lower is better)
Translates to: TMWLLGFELRAFGRAVNAPTQWL*VGTLLV
Trigger: AACCAGGAGGGTTCCCACCCACAGCCACTGGGTGGG...AGCATTGACTGCTCTTCCGAAGGCCCTGAGTTCAAATCCCAGCAACCACATGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147718.2
CDS-3UTR CCA 90 bp CCCATTAGGATACTAGCAATCAGGAAAAATGGCCCTGCCAGATCTGTCCCATCACTCCGGCCCACCCAGTaGCTGTGGGTGGGAACCCTC +
Preference number: 4 (lower is better)
Translates to: PIRILAIRKNGPARSVPSLRPTQ*LWVGTL
Trigger: GAGGGTTCCCACCCACAGCCACTGGGTGGGCCGGAG...TGATGGGACAGATCTGGCAGGGCCATTTTTCCTGATTGCTAGTATCCTAATGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000017920.14
CDS-3UTR TCA 90 bp ACACGTGCTCAGCAATGTGCTAGTCACTTCAGTCACATGATTTGGTATATGTTCACTCCCGGCGGAGGCTaGGCGGGCGACGGAGGCACT +
Preference number: 4 (lower is better)
Translates to: TRAQQCASHFSHMIWYMFTPGGG*AGDGGT
Trigger: AGTGCCTCCGTCGCCCGCTCAGCCTCCGCCGGGAGT...GAACATATACCAAATCATGTGACTGAAGTGACTAGCACATTGCTGAGCACGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR CCA 90 bp CCCATTAGGATACTAGCAATCAGGAAAAATGGCCCTGCCAGATCTGTCCCATCACATAGTCCCCGGGGCTaGTGCTCGAGTCCCGCACCA +
Preference number: 4 (lower is better)
Translates to: PIRILAIRKNGPARSVPSHSPRG*CSSPAP
Trigger: TGGTGCGGGACTCGAGCACCAGCCCCGGGGACTATG...TGATGGGACAGATCTGGCAGGGCCATTTTTCCTGATTGCTAGTATCCTAATGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR CCA 90 bp GCCACCATGTGGTTGCTGGGATTTGAACTCAGGGCCTTCGGAAGAGCAGTCAATGGGTGGGAACCCTCCTaGTTACCTCCAATCAGAGCC +
Preference number: 4 (lower is better)
Translates to: ATMWLLGFELRAFGRAVNGWEPS*LPPIRA
Trigger: GGCTCTGATTGGAGGTAACCAGGAGGGTTCCCACCC...ATTGACTGCTCTTCCGAAGGCCCTGAGTTCAAATCCCAGCAACCACATGGTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147718.2
CDS-3UTR CCA 90 bp GGTAATATTCACACAGTGCATGATTACGTCATGGGAGTGGGGAACAGTCTGCTGCCCACCCAGTGGCTGTaGGTGGGAACCCTCCTGGTT +
Preference number: 4 (lower is better)
Translates to: GNIHTVHDYVMGVGNSLLPTQWL*VGTLLV
Trigger: AACCAGGAGGGTTCCCACCCACAGCCACTGGGTGGG...CAGCAGACTGTTCCCCACTCCCATGACGTAATCATGCACTGTGTGAATATTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017920.14
CDS-3UTR TCA 90 bp ACTGCCATCTTACACTCACAGAGACCCATTTCCAGGCAAGTCTGGTGTTCTCTGCTGCCTCCTCCTGCCTaGGAATCACTCCACTACCCT +
Preference number: 4 (lower is better)
Translates to: TAILHSQRPISRQVWCSLLPPPA*ESLHYP
Trigger: AGGGTAGTGGAGTGATTCTCAGGCAGGAGGAGGCAG...CAGAGAACACCAGACTTGCCTGGAAATGGGTCTCTGTGAGTGTAAGATGGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108425.8
CDS-3UTR TCA 90 bp GCCACCATGTGGTTGCTGGGATTTGAACTCAGGGCCTTCGGAAGAGCAGTCAATAATCAGAGCCGATACTaGGGCGGAGGCAGGTCTATA +
Preference number: 4 (lower is better)
Translates to: ATMWLLGFELRAFGRAVNNQSRY*GGGRSI
Trigger: TATAGACCTGCCTCCGCCTCAGTATCGGCTCTGATT...ATTGACTGCTCTTCCGAAGGCCCTGAGTTCAAATCCCAGCAACCACATGGTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147718.2
CDS-3UTR TCA 90 bp AAAAGATCCCAGGTAACAGAATGCTTATATAAACTAGACTGCTTTGACACCTGTCGACCCGGCGGAGGCTaGGCGGGCGACGGAGGCACT +
Preference number: 4 (lower is better)
Translates to: KRSQVTECLYKLDCFDTCRPGGG*AGDGGT
Trigger: AGTGCCTCCGTCGCCCGCTCAGCCTCCGCCGGGTCG...ACAGGTGTCAAAGCAGTCTAGTTTATATAAGCATTCTGTTACCTGGGATCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108426.8
CDS-3UTR GCA 90 bp TTTGAAACAAGGTCTCACTTTCTAACTCCTGACTGTTCTGGAAGTAGCTCTGTACCGTGCCGCTGGCCCTaGAATAGCGCCACCGCCTCC +
Preference number: 4 (lower is better)
Translates to: FETRSHFLTPDCSGSSSVPCRWP*NSATAS
Trigger: GGAGGCGGTGGCGCTATTGCAGGGCCAGCGGCACGG...TACAGAGCTACTTCCAGAACAGTCAGGAGTTAGAAAGTGAGACCTTGTTTCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR GCA 90 bp GATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGGCCTTCGGAAATCACTCCACTACCCTaGCTTGATCTGGCCACTGGT +
Preference number: 4 (lower is better)
Translates to: DGCEPPCGCWDLNSGPSEITPLP*LDLATG
Trigger: ACCAGTGGCCAGATCAAGGCAGGGTAGTGGAGTGAT...TTCCGAAGGCCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147718.2
CDS-3UTR TCA 90 bp GAGTCAGATGTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGCTGCCTCCTCCTGCCTaGGAATCACTCCACTACCCT +
Preference number: 4 (lower is better)
Translates to: ESDVITDGCEPPCGCWDLLPPPA*ESLHYP
Trigger: AGGGTAGTGGAGTGATTCTCAGGCAGGAGGAGGCAG...CAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGACATCTGACTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147718.2
CDS-3UTR CCA 90 bp CTCTTAACCGCTGAGCCATCTGTCCAGCCCAAGAAGAACAGTATCTTAAATATACTCCTATTCGGAGCCTaGAGGGACTCACTCCCGGCG +
Preference number: 4 (lower is better)
Translates to: LLTAEPSVQPKKNSILNILLFGA*RDSLPA
Trigger: CGCCGGGAGTGAGTCCCTCCAGGCTCCGAATAGGAG...TATATTTAAGATACTGTTCTTCTTGGGCTGGACAGATGGCTCAGCGGTTAAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147718.2
CDS-3UTR TCA 90 bp TTGGTCACCTACACCAGAGACCAGCAAGTGCCTTTATCACCTGAAAGTCTCATGTCCACTACCCTGCCTTaGTCTGGCCACTGGTTCTAT +
Preference number: 4 (lower is better)
Translates to: LVTYTRDQQVPLSPESLMSTTLP*SGHWFY
Trigger: ATAGAACCAGTGGCCAGATCAAGGCAGGGTAGTGGA...CATGAGACTTTCAGGTGATAAAGGCACTTGCTGGTCTCTGGTGTAGGTGACCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR TCA 90 bp CCCATTAGGATACTAGCAATCAGGAAAAATGGCCCTGCCAGATCTGTCCCATCAAATCAGAGCCGATACTaGGGCGGAGGCAGGTCTATA +
Preference number: 4 (lower is better)
Translates to: PIRILAIRKNGPARSVPSNQSRY*GGGRSI
Trigger: TATAGACCTGCCTCCGCCTCAGTATCGGCTCTGATT...TGATGGGACAGATCTGGCAGGGCCATTTTTCCTGATTGCTAGTATCCTAATGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR GCA 90 bp TACGTCTTCTCATACAGGCACGGCAACTACCACCTAAAACTGCCAACTCAGAAGATCACTCCACTACCCTaGCTTGATCTGGCCACTGGT +
Preference number: 4 (lower is better)
Translates to: YVFSYRHGNYHLKLPTQKITPLP*LDLATG
Trigger: ACCAGTGGCCAGATCAAGGCAGGGTAGTGGAGTGAT...CTTCTGAGTTGGCAGTTTTAGGTGGTAGTTGCCGTGCCTGTATGAGAAGACGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR CCA 90 bp AGGTTGATCTGTTTTGCCCAAAAGAAAGGAGGCAATGTATTTACGTCTTCTCATAACACCCCGTGCCGCTaGCCCTGCAATAGCGCCACC +
Preference number: 4 (lower is better)
Translates to: RLICFAQKKGGNVFTSSHNTPCR*PCNSAT
Trigger: GGTGGCGCTATTGCAGGGCCAGCGGCACGGGGTGTT...ATGAGAAGACGTAAATACATTGCCTCCTTTCTTTTGGGCAAAACAGATCAACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR CCA 90 bp CTCTTAACCGCTGAGCCATCTGTCCAGCCCAAGAAGAACAGTATCTTAAATATACCCAGTGGCTGTGGGTaGGAACCCTCCTGGTTACCT +
Preference number: 4 (lower is better)
Translates to: LLTAEPSVQPKKNSILNIPSGCG*EPSWLP
Trigger: AGGTAACCAGGAGGGTTCCCACCCACAGCCACTGGG...TATATTTAAGATACTGTTCTTCTTGGGCTGGACAGATGGCTCAGCGGTTAAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147718.2
3UTR CAA 72 bp GAGCTATACTCAGCTGAAGTCCTCATCGGGATTCTGTaGATCCAGCAGACGGACATGTGTGAATGGGAAGTG +
Preference number: 4 (lower is better)
Translates to: ELYSAEVLIGIL*IQQTDMCEWEV
Trigger: CACTTCCCATTCACACATGTCCGTCTGCTGGATCAACAGAATCCCGATGAGGACTTCAGCTGAGTATAGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108425.8
ENSMUST00000108426.8
CDS-3UTR TCA 90 bp GGTAATATTCACACAGTGCATGATTACGTCATGGGAGTGGGGAACAGTCTGCTGTCATCGGGATTCTGTTaGTCCAGCAGACGGACATGT +
Preference number: 4 (lower is better)
Translates to: GNIHTVHDYVMGVGNSLLSSGFC*SSRRTC
Trigger: ACATGTCCGTCTGCTGGATCAACAGAATCCCGATGA...CAGCAGACTGTTCCCCACTCCCATGACGTAATCATGCACTGTGTGAATATTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017920.14
CDS-3UTR GCA 90 bp TGTGCTAGTCACTTCAGTCACATGATTTGGTATATGTTCAATGAATGCAAATTCAGTCCCCGGGGCTGGTaGTCGAGTCCCGCACCAGGA +
Preference number: 4 (lower is better)
Translates to: CASHFSHMIWYMFNECKFSPRGW*SSPAPG
Trigger: TCCTGGTGCGGGACTCGAGCACCAGCCCCGGGGACT...GAATTTGCATTCATTGAACATATACCAAATCATGTGACTGAAGTGACTAGCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR CCA 90 bp AAAAGATCCCAGGTAACAGAATGCTTATATAAACTAGACTGCTTTGACACCTGTAACACCCCGTGCCGCTaGCCCTGCAATAGCGCCACC +
Preference number: 4 (lower is better)
Translates to: KRSQVTECLYKLDCFDTCNTPCR*PCNSAT
Trigger: GGTGGCGCTATTGCAGGGCCAGCGGCACGGGGTGTT...ACAGGTGTCAAAGCAGTCTAGTTTATATAAGCATTCTGTTACCTGGGATCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
ENSMUST00000108426.8
CDS-3UTR CCA 90 bp TGTGGTTGCTGGGATTTGAACTCAGGGCCTTCGGAAGAGCAGTCAATGCTCTTATACCCTGCCTTGATCTaGCCACTGGTTCTATCAATG +
Preference number: 4 (lower is better)
Translates to: CGCWDLNSGPSEEQSMLLYPALI*PLVLSM
Trigger: CATTGATAGAACCAGTGGCCAGATCAAGGCAGGGTA...TAAGAGCATTGACTGCTCTTCCGAAGGCCCTGAGTTCAAATCCCAGCAACCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147718.2
CDS-3UTR CCA 90 bp TACACACGTGCTCAGCAATGTGCTAGTCACTTCAGTCACATGATTTGGTATATGGGGTGGGAACCCTCCTaGTTACCTCCAATCAGAGCC +
Preference number: 4 (lower is better)
Translates to: YTRAQQCASHFSHMIWYMGWEPS*LPPIRA
Trigger: GGCTCTGATTGGAGGTAACCAGGAGGGTTCCCACCC...CATATACCAAATCATGTGACTGAAGTGACTAGCACATTGCTGAGCACGTGTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017920.14
3UTR CAA 72 bp AGAAGTCCTGGAATTATCAGCACAGGCCACCATACCTaGAAACTTGAGCCACAGCTCCAATACTGGAGTGAG +
Preference number: 4 (lower is better)
Translates to: RSPGIISTGHHT*KLEPQLQYWSE
Trigger: CTCACTCCAGTATTGGAGCTGTGGCTCAAGTTTCAAGGTATGGTGGCCTGTGCTGATAATTCCAGGACTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108425.8
CDS-3UTR TCA 90 bp CCCATTAGGATACTAGCAATCAGGAAAAATGGCCCTGCCAGATCTGTCCCATCATGTGTGAATGGGAAGTaGCCTCGTTTGCCATTACAC +
Preference number: 4 (lower is better)
Translates to: PIRILAIRKNGPARSVPSCVNGK*PRLPLH
Trigger: GTGTAATGGCAAACGAGGTCACTTCCCATTCACACA...TGATGGGACAGATCTGGCAGGGCCATTTTTCCTGATTGCTAGTATCCTAATGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000017920.14
CDS-3UTR CCA 90 bp AGCATTCAAATCAGTTGTGACGATGATTTTCTAAGAAGTGTTTTCGATGCCATACATAGTCCCCGGGGCTaGTGCTCGAGTCCCGCACCA +
Preference number: 4 (lower is better)
Translates to: SIQISCDDDFLRSVFDAIHSPRG*CSSPAP
Trigger: TGGTGCGGGACTCGAGCACCAGCCCCGGGGACTATG...TATGGCATCGAAAACACTTCTTAGAAAATCATCGTCACAACTGATTTGAATGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR CCA 90 bp AAAAGATCCCAGGTAACAGAATGCTTATATAAACTAGACTGCTTTGACACCTGTCTCCTATTCGGAGCCTaGAGGGACTCACTCCCGGCG +
Preference number: 4 (lower is better)
Translates to: KRSQVTECLYKLDCFDTCLLFGA*RDSLPA
Trigger: CGCCGGGAGTGAGTCCCTCCAGGCTCCGAATAGGAG...ACAGGTGTCAAAGCAGTCTAGTTTATATAAGCATTCTGTTACCTGGGATCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR CCA 90 bp GGTAATATTCACACAGTGCATGATTACGTCATGGGAGTGGGGAACAGTCTGCTGTACCCTGCCTTGATCTaGCCACTGGTTCTATCAATG +
Preference number: 4 (lower is better)
Translates to: GNIHTVHDYVMGVGNSLLYPALI*PLVLSM
Trigger: CATTGATAGAACCAGTGGCCAGATCAAGGCAGGGTA...CAGCAGACTGTTCCCCACTCCCATGACGTAATCATGCACTGTGTGAATATTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR TCA 90 bp CTCTTAACCGCTGAGCCATCTGTCCAGCCCAAGAAGAACAGTATCTTAAATATATCCACTACCCTGCCTTaGTCTGGCCACTGGTTCTAT +
Preference number: 4 (lower is better)
Translates to: LLTAEPSVQPKKNSILNISTTLP*SGHWFY
Trigger: ATAGAACCAGTGGCCAGATCAAGGCAGGGTAGTGGA...TATATTTAAGATACTGTTCTTCTTGGGCTGGACAGATGGCTCAGCGGTTAAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147718.2
CDS-3UTR TCA 90 bp AAGTATAAGGTGTTTCTATTGGTCACCTACACCAGAGACCAGCAAGTGCCTTTAAATCAGAGCCGATACTaGGGCGGAGGCAGGTCTATA +
Preference number: 4 (lower is better)
Translates to: KYKVFLLVTYTRDQQVPLNQSRY*GGGRSI
Trigger: TATAGACCTGCCTCCGCCTCAGTATCGGCTCTGATT...TAAAGGCACTTGCTGGTCTCTGGTGTAGGTGACCAATAGAAACACCTTATACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR GCA 90 bp AAGTATAAGGTGTTTCTATTGGTCACCTACACCAGAGACCAGCAAGTGCCTTTAATCACTCCACTACCCTaGCTTGATCTGGCCACTGGT +
Preference number: 4 (lower is better)
Translates to: KYKVFLLVTYTRDQQVPLITPLP*LDLATG
Trigger: ACCAGTGGCCAGATCAAGGCAGGGTAGTGGAGTGAT...TAAAGGCACTTGCTGGTCTCTGGTGTAGGTGACCAATAGAAACACCTTATACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR CCA 90 bp AAAAGATCCCAGGTAACAGAATGCTTATATAAACTAGACTGCTTTGACACCTGTCCCAGTGGCTGTGGGTaGGAACCCTCCTGGTTACCT +
Preference number: 4 (lower is better)
Translates to: KRSQVTECLYKLDCFDTCPSGCG*EPSWLP
Trigger: AGGTAACCAGGAGGGTTCCCACCCACAGCCACTGGG...ACAGGTGTCAAAGCAGTCTAGTTTATATAAGCATTCTGTTACCTGGGATCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017920.14
CDS-3UTR TCA 90 bp AGCATTCAAATCAGTTGTGACGATGATTTTCTAAGAAGTGTTTTCGATGCCATACTGCCTCCTCCTGCCTaGGAATCACTCCACTACCCT +
Preference number: 4 (lower is better)
Translates to: SIQISCDDDFLRSVFDAILPPPA*ESLHYP
Trigger: AGGGTAGTGGAGTGATTCTCAGGCAGGAGGAGGCAG...TATGGCATCGAAAACACTTCTTAGAAAATCATCGTCACAACTGATTTGAATGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR CCA 90 bp AAGTATAAGGTGTTTCTATTGGTCACCTACACCAGAGACCAGCAAGTGCCTTTATACCCTGCCTTGATCTaGCCACTGGTTCTATCAATG +
Preference number: 4 (lower is better)
Translates to: KYKVFLLVTYTRDQQVPLYPALI*PLVLSM
Trigger: CATTGATAGAACCAGTGGCCAGATCAAGGCAGGGTA...TAAAGGCACTTGCTGGTCTCTGGTGTAGGTGACCAATAGAAACACCTTATACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR TCA 90 bp GGACAAAGGAGAACCCAAATGAAGGCAATTTATAGTGTAATATACTTCACCAACTCCACTACCCTGCCTTaGTCTGGCCACTGGTTCTAT +
Preference number: 4 (lower is better)
Translates to: GQRRTQMKAIYSVIYFTNSTTLP*SGHWFY
Trigger: ATAGAACCAGTGGCCAGATCAAGGCAGGGTAGTGGA...GTTGGTGAAGTATATTACACTATAAATTGCCTTCATTTGGGTTCTCCTTTGTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR TCA 90 bp TACACACGTGCTCAGCAATGTGCTAGTCACTTCAGTCACATGATTTGGTATATGAATGAATCAAATTCTTaGTCTCCTATTCGGAGCCTG +
Preference number: 4 (lower is better)
Translates to: YTRAQQCASHFSHMIWYMNESNS*SPIRSL
Trigger: CAGGCTCCGAATAGGAGATCAAGAATTTGATTCATT...CATATACCAAATCATGTGACTGAAGTGACTAGCACATTGCTGAGCACGTGTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
3UTR CAA 72 bp TTTTTGGAAGATATTTGTAAGAAGTCCTTTGATCTCTaGAGGTCCAATAACTGCTACACCCAGCCAAATCCA +
Preference number: 4 (lower is better)
Translates to: FLEDICKKSFDL*RSNNCYTQPNP
Trigger: TGGATTTGGCTGGGTGTAGCAGTTATTGGACCTCAAGAGATCAAAGGACTTCTTACAAATATCTTCCAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS-3UTR TCA 90 bp CAATTTCAGTTTACTTTGCTCTGTGACAATGTACATACGCATCTGACTAGGATTAATGAATCAAATTCTTaGTCTCCTATTCGGAGCCTG +
Preference number: 4 (lower is better)
Translates to: QFQFTLLCDNVHTHLTRINESNS*SPIRSL
Trigger: CAGGCTCCGAATAGGAGATCAAGAATTTGATTCATT...AATCCTAGTCAGATGCGTATGTACATTGTCACAGAGCAAAGTAAACTGAAATTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000108425.8
CDS CCA 90 bp CCGGGGCTGGTGCTCGAGTCCCGCACCAGGAACACCCCGTGCCGCTaGCCCTGCAATAGCGCCACCGCCTCCTGCCGGCTCAGGCGGCCC +
Preference number: 5 (lower is better)
Translates to: PGLVLESRTRNTPCR*PCNSATASCRLRRP
Trigger: GGGCCGCCTGAGCCGGCAGGAGGCGGTGGCGCTATTGCAGGGCCAGCGGCACGGGGTGTTCCTGGTGCGGGACTCGAGCACCAGCCCCGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000017920.14
ENSMUST00000093115.4
ENSMUST00000108425.8
ENSMUST00000108426.8
CDS-3UTR CAA 90 bp ATGTGGTTGCTGGGATTTGAACTCAGGGCCTTCGGAAGAGCAGTCAATGCTCTTAGTGTTGACGCTGGGTaGGGCATAGGGCCCAGGCTC +
Preference number: 5 (lower is better)
Translates to: MWLLGFELRAFGRAVNALSVDAG*GIGPRL
Trigger: GAGCCTGGGCCCTATGCCCAACCCAGCGTCAACACT...AAGAGCATTGACTGCTCTTCCGAAGGCCCTGAGTTCAAATCCCAGCAACCACAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147718.2
CDS-3UTR CAA 90 bp TACGTCTTCTCATACAGGCACGGCAACTACCACCTAAAACTGCCAACTCAGAAGAGTGTTGACGCTGGGTaGGGCATAGGGCCCAGGCTC +
Preference number: 5 (lower is better)
Translates to: YVFSYRHGNYHLKLPTQKSVDAG*GIGPRL
Trigger: GAGCCTGGGCCCTATGCCCAACCCAGCGTCAACACT...CTTCTGAGTTGGCAGTTTTAGGTGGTAGTTGCCGTGCCTGTATGAGAAGACGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017920.14
CDS GCA 72 bp GAGTCCCGCACCAGGAACACCCCGTGCCGCTGGCCCTaGAATAGCGCCACCGCCTCCTGCCGGCTCAGGCGG +
Preference number: 6 (lower is better)
Translates to: ESRTRNTPCRWP*NSATASCRLRR
Trigger: CCGCCTGAGCCGGCAGGAGGCGGTGGCGCTATTGCAGGGCCAGCGGCACGGGGTGTTCCTGGTGCGGGACTC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000017920.14
ENSMUST00000093115.4
ENSMUST00000108425.8
ENSMUST00000108426.8
CDS CCA 72 bp GTGCTCGAGTCCCGCACCAGGAACACCCCGTGCCGCTaGCCCTGCAATAGCGCCACCGCCTCCTGCCGGCTC +
Preference number: 6 (lower is better)
Translates to: VLESRTRNTPCR*PCNSATASCRL
Trigger: GAGCCGGCAGGAGGCGGTGGCGCTATTGCAGGGCCAGCGGCACGGGGTGTTCCTGGTGCGGGACTCGAGCAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000017920.14
ENSMUST00000093115.4
ENSMUST00000108425.8
ENSMUST00000108426.8
CDS CCA 72 bp GGCATAGGGCCCAGGCTCCGGCCCACCCAGTGGCTGTaGGTGGGAACCCTCCTGGTTACCTCCAATCAGAGC +
Preference number: 6 (lower is better)
Translates to: GIGPRLRPTQWL*VGTLLVTSNQS
Trigger: GCTCTGATTGGAGGTAACCAGGAGGGTTCCCACCCACAGCCACTGGGTGGGCCGGAGCCTGGGCCCTATGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000147718.2
CDS CAA 90 bp AATGGGCCCATTCTGGAGGTTAGGGAGCGGAGTGTTGACGCTGGGTaGGGCATAGGGCCCAGGCTCCGGCCCACCCAGTGGCTGTGGGTG +
Preference number: 6 (lower is better)
Translates to: NGPILEVRERSVDAG*GIGPRLRPTQWLWV
Trigger: CACCCACAGCCACTGGGTGGGCCGGAGCCTGGGCCCTATGCCCAACCCAGCGTCAACACTCCGCTCCCTAACCTCCAGAATGGGCCCATT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000147718.2
CDS CAA 72 bp ATTCTGGAGGTTAGGGAGCGGAGTGTTGACGCTGGGTaGGGCATAGGGCCCAGGCTCCGGCCCACCCAGTGG +
Preference number: 6 (lower is better)
Translates to: ILEVRERSVDAG*GIGPRLRPTQW
Trigger: CCACTGGGTGGGCCGGAGCCTGGGCCCTATGCCCAACCCAGCGTCAACACTCCGCTCCCTAACCTCCAGAAT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017920.14
ENSMUST00000147718.2
CDS CCA 72 bp GCAATGAATCAAATTCTTGATCTCCTATTCGGAGCCTaGAGGGACTCACTCCCGGCGGAGGCTGAGCGGGCG +
Preference number: 6 (lower is better)
Translates to: AMNQILDLLFGA*RDSLPAEAERA
Trigger: CGCCCGCTCAGCCTCCGCCGGGAGTGAGTCCCTCCAGGCTCCGAATAGGAGATCAAGAATTTGATTCATTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000017920.14
ENSMUST00000093115.4
ENSMUST00000108425.8
ENSMUST00000147718.2