Pregenerated sensors for COQ3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028247Ensembl transcript IDs: ENSMUST00000029909.3
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TATATGTATGTATATCACACGAGTGCCTGCCAAAGCCATGGAGTCTaGTCCCTGACAACTGCAGTTGTAGATAGCTGTGGCCCATCATGG | + |
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Preference number: 1 (lower is better) Translates to: YMYVYHTSACQSHGV*SLTTAVVDSCGPSW Trigger: CCATGATGGGCCACAGCTATCTACAACTGCAGTTGTCAGGGATCAGACTCCATGGCTTTGGCAGGCACTCGTGTGATATACATACATATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| 3UTR TCA 90 bp | GCTCACACCCAAGCCATAAGCAGGAAGCAGACATCATACTTGGAATaGCAGAAGTCTTTTGAAACCTCAGATCCCACCACCAGTGACACA | + |
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Preference number: 1 (lower is better) Translates to: AHTQAISRKQTSYLE*QKSFETSDPTTSDT Trigger: TGTGTCACTGGTGGTGGGATCTGAGGTTTCAAAAGACTTCTGTCATTCCAAGTATGATGTCTGCTTCCTGCTTATGGCTTGGGTGTGAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| 3UTR CCA 90 bp | GAAGATGGTCAACACAAACTGAACTCAGCTAAAGAGATGGCTCAGTaGTTAAGATCACTGACTGCTGCTCTTCCAGGGGTCCTGAGTTCA | + |
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Preference number: 1 (lower is better) Translates to: EDGQHKLNSAKEMAQ*LRSLTAALPGVLSS Trigger: TGAACTCAGGACCCCTGGAAGAGCAGCAGTCAGTGATCTTAACCACTGAGCCATCTCTTTAGCTGAGTTCAGTTTGTGTTGACCATCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| 3UTR-3UTR TCA 90 bp | TTTGAGGCTGACAGTTACAGATGTGTGGGAGTCCGTCACCATCATGGCAGGGAGCGCAGGAGCAGCTGCTaGGAGCTCACACCCAAGCCA | + |
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Preference number: 2 (lower is better) Translates to: FEADSYRCVGVRHHHGRERRSSC*ELTPKP Trigger: TGGCTTGGGTGTGAGCTCTCAGCAGCTGCTCCTGCG...CTCCCTGCCATGATGGTGACGGACTCCCACACATCTGTAACTGTCAGCCTCAAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| 3UTR-3UTR GCA 90 bp | GAAACCTCAGATCCCACCACCAGTGACACACATCCACCAAGATCATATCTCCCAAAGATCACTGACTGCTaGTCTTCCAGGGGTCCTGAG | + |
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Preference number: 2 (lower is better) Translates to: ETSDPTTSDTHPPRSYLPKITDC*SSRGPE Trigger: CTCAGGACCCCTGGAAGAGCAGCAGTCAGTGATCTT...TGGGAGATATGATCTTGGTGGATGTGTGTCACTGGTGGTGGGATCTGAGGTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| 3UTR-3UTR GCA 90 bp | CAGCTGCTGAGAGCTCACACCCAAGCCATAAGCAGGAAGCAGACATCATACTTGGTTAAGATCACTGACTaGTGCTCTTCCAGGGGTCCT | + |
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Preference number: 2 (lower is better) Translates to: QLLRAHTQAISRKQTSYLVKITD*CSSRGP Trigger: AGGACCCCTGGAAGAGCAGCAGTCAGTGATCTTAAC...CAAGTATGATGTCTGCTTCCTGCTTATGGCTTGGGTGTGAGCTCTCAGCAGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| 3UTR-3UTR CCA 90 bp | GAAACCTCAGATCCCACCACCAGTGACACACATCCACCAAGATCATATCTCCCAAGCTGTGGCCCATCATaGGGTGCTGGGGATAAAACT | + |
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Preference number: 2 (lower is better) Translates to: ETSDPTTSDTHPPRSYLPSCGPS*GAGDKT Trigger: AGTTTTATCCCCAGCACCCCATGATGGGCCACAGCT...TGGGAGATATGATCTTGGTGGATGTGTGTCACTGGTGGTGGGATCTGAGGTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| 3UTR-3UTR TCA 90 bp | TCCCTGACAACTGCAGTTGTAGATAGCTGTGGCCCATCATGGGGTGCTGGGGATATGGTCAACACAAACTaGACTCAGCTAAAGAGATGG | + |
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Preference number: 2 (lower is better) Translates to: SLTTAVVDSCGPSWGAGDMVNTN*TQLKRW Trigger: CCATCTCTTTAGCTGAGTTCAGTTTGTGTTGACCAT...ATCCCCAGCACCCCATGATGGGCCACAGCTATCTACAACTGCAGTTGTCAGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| 3UTR-3UTR TCA 90 bp | TTTGAGGCTGACAGTTACAGATGTGTGGGAGTCCGTCACCATCATGGCAGGGAGACTCCCAAATATCAGTaGTTAAAAACTAGAGCTGGT | + |
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Preference number: 2 (lower is better) Translates to: FEADSYRCVGVRHHHGRETPKYQ*LKTRAG Trigger: ACCAGCTCTAGTTTTTAATCACTGATATTTGGGAGT...CTCCCTGCCATGATGGTGACGGACTCCCACACATCTGTAACTGTCAGCCTCAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| 3UTR-3UTR TCA 90 bp | AGGGTTTATTTGAGGCTGACAGTTACAGATGTGTGGGAGTCCGTCACCATCATGAAAGTGTCTCTTAGGTaGCACAGAAATTTTTCTCCA | + |
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Preference number: 2 (lower is better) Translates to: RVYLRLTVTDVWESVTIMKVSLR*HRNFSP Trigger: TGGAGAAAAATTTCTGTGTCACCTAAGAGACACTTT...CATGATGGTGACGGACTCCCACACATCTGTAACTGTCAGCCTCAAATAAACCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| 3UTR-3UTR CCA 90 bp | AGCAGACATCATACTTGGAATGACAGAAGTCTTTTGAAACCTCAGATCCCACCAAAAGAGATGGCTCAGTaGTTAAGATCACTGACTGCT | + |
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Preference number: 2 (lower is better) Translates to: SRHHTWNDRSLLKPQIPPKEMAQ*LRSLTA Trigger: AGCAGTCAGTGATCTTAACCACTGAGCCATCTCTTT...TGGTGGGATCTGAGGTTTCAAAAGACTTCTGTCATTCCAAGTATGATGTCTGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| 3UTR-3UTR CCA 90 bp | TATTTATATAGCGGAGAAAGTAGCTCCTCGCTAGCCGAGGCACTACTGGCATTTATACTCAAGAGAAGATaGTCAACACAAACTGAACTC | + |
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Preference number: 2 (lower is better) Translates to: YLYSGESSSSLAEALLAFILKRR*STQTEL Trigger: GAGTTCAGTTTGTGTTGACCATCTTCTCTTGAGTAT...AAATGCCAGTAGTGCCTCGGCTAGCGAGGAGCTACTTTCTCCGCTATATAAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| 3UTR CAA 90 bp | ATCCCACCACCAGTGACACACATCCACCAAGATCATATCTCCCAATaGTTCCCAGTTTCACCAAATGAAGATCAAGAATTTAAACATACA | + |
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Preference number: 2 (lower is better) Translates to: IPPPVTHIHQDHISQ*FPVSPNEDQEFKHT Trigger: TGTATGTTTAAATTCTTGATCTTCATTTGGTGAAACTGGGAACAATTGGGAGATATGATCTTGGTGGATGTGTGTCACTGGTGGTGGGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| 3UTR CCA 72 bp | CTGACAACTGCAGTTGTAGATAGCTGTGGCCCATCATaGGGTGCTGGGGATAAAACTCAGGTCCTTTGCTGG | + |
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Preference number: 3 (lower is better) Translates to: LTTAVVDSCGPS*GAGDKTQVLCW Trigger: CCAGCAAAGGACCTGAGTTTTATCCCCAGCACCCCATGATGGGCCACAGCTATCTACAACTGCAGTTGTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| 3UTR CCA 72 bp | GGAAGGGTTTATTTGAGGCTGACAGTTACAGATGTGTaGGAGTCCGTCACCATCATGGCAGGGAGCATGGCA | + |
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Preference number: 3 (lower is better) Translates to: GRVYLRLTVTDV*ESVTIMAGSMA Trigger: TGCCATGCTCCCTGCCATGATGGTGACGGACTCCCACACATCTGTAACTGTCAGCCTCAAATAAACCCTTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| 3UTR CCA 72 bp | CAACACAAACTGAACTCAGCTAAAGAGATGGCTCAGTaGTTAAGATCACTGACTGCTGCTCTTCCAGGGGTC | + |
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Preference number: 3 (lower is better) Translates to: QHKLNSAKEMAQ*LRSLTAALPGV Trigger: GACCCCTGGAAGAGCAGCAGTCAGTGATCTTAACCACTGAGCCATCTCTTTAGCTGAGTTCAGTTTGTGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| 3UTR TCA 72 bp | GGTCCTGAGTTCAAACCCCAGCATCCACGTGAGATCTaGCAACCTCTTCTGGTGTATCTGAAGATAGTGATA | + |
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Preference number: 3 (lower is better) Translates to: GPEFKPQHPREI*QPLLVYLKIVI Trigger: TATCACTATCTTCAGATACACCAGAAGAGGTTGTCAGATCTCACGTGGATGCTGGGGTTTGAACTCAGGACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR GCA 90 bp | CAGGCAGGCATGGCGCAGGAGCAGCTGCTGAGAGCTCACACCCAAGCCATAAGCAGCATCAAAACACTCTaGGCTCTCATCCACGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: QAGMAQEQLLRAHTQAISSIKTL*ALIHGL Trigger: GAGGCCGTGGATGAGAGCGCAGAGTGTTTTGATGCT...GCTTATGGCTTGGGTGTGAGCTCTCAGCAGCTGCTCCTGCGCCATGCCTGCCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR TCA 90 bp | AGGGTTTATTTGAGGCTGACAGTTACAGATGTGTGGGAGTCCGTCACCATCATGGGCTCCTGGTGCTCCTaGGCCCTGGATCTCACAGCA | + |
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Preference number: 4 (lower is better) Translates to: RVYLRLTVTDVWESVTIMGSWCS*ALDLTA Trigger: TGCTGTGAGATCCAGGGCTCAGGAGCACCAGGAGCC...CATGATGGTGACGGACTCCCACACATCTGTAACTGTCAGCCTCAAATAAACCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR CCA 90 bp | GAAACCTCAGATCCCACCACCAGTGACACACATCCACCAAGATCATATCTCCCAGGTGCTCCTGAGCCCTaGATCTCACAGCATGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: ETSDPTTSDTHPPRSYLPGAPEP*ISQHGL Trigger: CAGCCCATGCTGTGAGATCCAGGGCTCAGGAGCACC...TGGGAGATATGATCTTGGTGGATGTGTGTCACTGGTGGTGGGATCTGAGGTTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR TCA 90 bp | CCTATATGTATGTATATCACACGAGTGCCTGCCAAAGCCATGGAGTCTGATCCCTCATCCCACCACGTGTaGGCCAGGGCCTGGAAGTTT | + |
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Preference number: 4 (lower is better) Translates to: PICMYITRVPAKAMESDPSSHHV*ARAWKF Trigger: AAACTTCCAGGCCCTGGCTCACACGTGGTGGGATGA...GGGATCAGACTCCATGGCTTTGGCAGGCACTCGTGTGATATACATACATATAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR GCA 90 bp | CAGCTGCTGAGAGCTCACACCCAAGCCATAAGCAGGAAGCAGACATCATACTTGTCCAGGTGGCTCACATaGTCCACAACTTCAGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: QLLRAHTQAISRKQTSYLSRWLT*STTSEA Trigger: GGCTTCTGAAGTTGTGGAGCATGTGAGCCACCTGGA...CAAGTATGATGTCTGCTTCCTGCTTATGGCTTGGGTGTGAGCTCTCAGCAGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR TCA 90 bp | TATTTATATAGCGGAGAAAGTAGCTCCTCGCTAGCCGAGGCACTACTGGCATTTGGGCCTGGAAGTTTTTaGCCTCCCTGCTGTCAACTG | + |
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Preference number: 4 (lower is better) Translates to: YLYSGESSSSLAEALLAFGPGSF*PPCCQL Trigger: CAGTTGACAGCAGGGAGGTCAAAAACTTCCAGGCCC...AAATGCCAGTAGTGCCTCGGCTAGCGAGGAGCTACTTTCTCCGCTATATAAATA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR CCA 90 bp | CAGCTGCTGAGAGCTCACACCCAAGCCATAAGCAGGAAGCAGACATCATACTTGCCTCTTATCCAGGACTaGATCAAAGGACTTATGGTG | + |
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Preference number: 4 (lower is better) Translates to: QLLRAHTQAISRKQTSYLPLIQD*IKGLMV Trigger: CACCATAAGTCCTTTGATCCAGTCCTGGATAAGAGG...CAAGTATGATGTCTGCTTCCTGCTTATGGCTTGGGTGTGAGCTCTCAGCAGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR GCA 90 bp | TTTGAGGCTGACAGTTACAGATGTGTGGGAGTCCGTCACCATCATGGCAGGGAGTTTTGGAACAATGCCTaGAATTTGCTCTGCGAAAAC | + |
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Preference number: 4 (lower is better) Translates to: FEADSYRCVGVRHHHGREFWNNA*NLLCEN Trigger: GTTTTCGCAGAGCAAATTGCAGGCATTGTTCCAAAA...CTCCCTGCCATGATGGTGACGGACTCCCACACATCTGTAACTGTCAGCCTCAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR TCA 90 bp | TTGCCTATATGTATGTATATCACACGAGTGCCTGCCAAAGCCATGGAGTCTGATGATAGCAGCACTGGATaGACATTTCCAGGTGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: LPICMYITRVPAKAMESDDSSTG*TFPGGS Trigger: TGAGCCACCTGGAAATGTTCATCCAGTGCTGCTATC...ATCAGACTCCATGGCTTTGGCAGGCACTCGTGTGATATACATACATATAGGCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR GCA 90 bp | GAAACCTCAGATCCCACCACCAGTGACACACATCCACCAAGATCATATCTCCCAACAATGCCTGCAATTTaGTCTGCGAAAACAATTCCC | + |
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Preference number: 4 (lower is better) Translates to: ETSDPTTSDTHPPRSYLPTMPAI*SAKTIP Trigger: GGGAATTGTTTTCGCAGAGCAAATTGCAGGCATTGT...TGGGAGATATGATCTTGGTGGATGTGTGTCACTGGTGGTGGGATCTGAGGTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR TCA 90 bp | TATTTATATAGCGGAGAAAGTAGCTCCTCGCTAGCCGAGGCACTACTGGCATTTTGCCACAGTTTCAACTaGCAGACCATTTGGTTCCAA | + |
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Preference number: 4 (lower is better) Translates to: YLYSGESSSSLAEALLAFCHSFN*QTIWFQ Trigger: TTGGAACCAAATGGTCTGTCAGTTGAAACTGTGGCA...AAATGCCAGTAGTGCCTCGGCTAGCGAGGAGCTACTTTCTCCGCTATATAAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR GCA 90 bp | GAAACCTCAGATCCCACCACCAGTGACACACATCCACCAAGATCATATCTCCCATGTAAGTTTTTACTCTaGTCAAACAGGAGAGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: ETSDPTTSDTHPPRSYLPCKFLL*SNRREP Trigger: TGGCTCTCTCCTGTTTGAGCAGAGTAAAAACTTACA...TGGGAGATATGATCTTGGTGGATGTGTGTCACTGGTGGTGGGATCTGAGGTTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR GCA 90 bp | TTGCCTATATGTATGTATATCACACGAGTGCCTGCCAAAGCCATGGAGTCTGATGCCTGCAATTTGCTCTaGGAAAACAATTCCCAAGGC | + |
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Preference number: 4 (lower is better) Translates to: LPICMYITRVPAKAMESDACNLL*ENNSQG Trigger: GCCTTGGGAATTGTTTTCGCAGAGCAAATTGCAGGC...ATCAGACTCCATGGCTTTGGCAGGCACTCGTGTGATATACATACATATAGGCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR GCA 90 bp | TATTTATATAGCGGAGAAAGTAGCTCCTCGCTAGCCGAGGCACTACTGGCATTTTCTCACAGCATGGGCTaGATAGTTAAGGCTGGTATT | + |
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Preference number: 4 (lower is better) Translates to: YLYSGESSSSLAEALLAFSHSMG*IVKAGI Trigger: AATACCAGCCTTAACTATGCAGCCCATGCTGTGAGA...AAATGCCAGTAGTGCCTCGGCTAGCGAGGAGCTACTTTCTCCGCTATATAAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR CCA 90 bp | AGGGTTTATTTGAGGCTGACAGTTACAGATGTGTGGGAGTCCGTCACCATCATGCGTATGAGTGCCTTTTaGAACAATGCCTGCAATTTG | + |
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Preference number: 4 (lower is better) Translates to: RVYLRLTVTDVWESVTIMRMSAF*NNACNL Trigger: CAAATTGCAGGCATTGTTCCAAAAGGCACTCATACG...CATGATGGTGACGGACTCCCACACATCTGTAACTGTCAGCCTCAAATAAACCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR TCA 90 bp | GTGACACACATCCACCAAGATCATATCTCCCAATTGTTCCCAGTTTCACCAAATGGCTTTCCTGGATGGTaGCTAGCACTTGTTTTCAAA | + |
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Preference number: 4 (lower is better) Translates to: VTHIHQDHISQLFPVSPNGFPGW*LALVFK Trigger: TTTGAAAACAAGTGCTAGTCACCATCCAGGAAAGCC...ATTTGGTGAAACTGGGAACAATTGGGAGATATGATCTTGGTGGATGTGTGTCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR CCA 90 bp | GTGACACACATCCACCAAGATCATATCTCCCAATTGTTCCCAGTTTCACCAAATATGAACATTTCCAGGTaGCTCACATGCTCCACAACT | + |
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Preference number: 4 (lower is better) Translates to: VTHIHQDHISQLFPVSPNMNISR*LTCSTT Trigger: AGTTGTGGAGCATGTGAGCCACCTGGAAATGTTCAT...ATTTGGTGAAACTGGGAACAATTGGGAGATATGATCTTGGTGGATGTGTGTCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR TCA 90 bp | AGCAGACATCATACTTGGAATGACAGAAGTCTTTTGAAACCTCAGATCCCACCAGTCAACTGTTGTTTGTaGAGTACTGTACAATCTCTT | + |
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Preference number: 4 (lower is better) Translates to: SRHHTWNDRSLLKPQIPPVNCCL*STVQSL Trigger: AAGAGATTGTACAGTACTTCACAAACAACAGTTGAC...TGGTGGGATCTGAGGTTTCAAAAGACTTCTGTCATTCCAAGTATGATGTCTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| 3UTR CAA 72 bp | CCAGTGACACACATCCACCAAGATCATATCTCCCAATaGTTCCCAGTTTCACCAAATGAAGATCAAGAATTT | + |
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Preference number: 4 (lower is better) Translates to: PVTHIHQDHISQ*FPVSPNEDQEF Trigger: AAATTCTTGATCTTCATTTGGTGAAACTGGGAACAATTGGGAGATATGATCTTGGTGGATGTGTGTCACTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR GCA 90 bp | TCCCAGTTTCACCAAATGAAGATCAAGAATTTAAACATACAAGCCTACGGGGAAGGACTTATGGTGCTGTaGTATCTTAATGTTTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: SQFHQMKIKNLNIQAYGEGLMVL*YLNVFS Trigger: GCTGAAAACATTAAGATAGCACAGCACCATAAGTCC...TTCCCCGTAGGCTTGTATGTTTAAATTCTTGATCTTCATTTGGTGAAACTGGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR CAA 90 bp | TCCCTGACAACTGCAGTTGTAGATAGCTGTGGCCCATCATGGGGTGCTGGGGATCTTGTTTTCAAAAGATaGTCTCTAATGAATGGCACC | + |
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Preference number: 5 (lower is better) Translates to: SLTTAVVDSCGPSWGAGDLVFKR*SLMNGT Trigger: GGTGCCATTCATTAGAGACAATCTTTTGAAAACAAG...ATCCCCAGCACCCCATGATGGGCCACAGCTATCTACAACTGCAGTTGTCAGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS CCA 90 bp | CTCCTCCAGGGAACACACTTTGTACTGTATCCTCTTATCCAGGACTaGATCAAAGGACTTATGGTGCTGTGCTATCTTAATGTTTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: LLQGTHFVLYPLIQD*IKGLMVLCYLNVFS Trigger: GCTGAAAACATTAAGATAGCACAGCACCATAAGTCCTTTGATCCAGTCCTGGATAAGAGGATACAGTACAAAGTGTGTTCCCTGGAGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR CAA 90 bp | TTGCCTATATGTATGTATATCACACGAGTGCCTGCCAAAGCCATGGAGTCTGATTCCAGGGAACACACTTaGTACTGTATCCTCTTATCC | + |
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Preference number: 5 (lower is better) Translates to: LPICMYITRVPAKAMESDSREHT*YCILLS Trigger: GGATAAGAGGATACAGTACAAAGTGTGTTCCCTGGA...ATCAGACTCCATGGCTTTGGCAGGCACTCGTGTGATATACATACATATAGGCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS GCA 90 bp | TTGTACTGTATCCTCTTATCCAGGACTGGATCAAAGGACTTATGGTaGTGTGCTATCTTAATGTTTTCAGCCACGGGATCAATTCCAACA | + |
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Preference number: 5 (lower is better) Translates to: LYCILLSRTGSKDLW*CAILMFSATGSIPT Trigger: TGTTGGAATTGATCCCGTGGCTGAAAACATTAAGATAGCACAGCACCATAAGTCCTTTGATCCAGTCCTGGATAAGAGGATACAGTACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS-3UTR CAA 90 bp | TCCCAGTTTCACCAAATGAAGATCAAGAATTTAAACATACAAGCCTACGGGGAACAACTGACAGACCATTaGGTTCCAAGATACTCTCTA | + |
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Preference number: 5 (lower is better) Translates to: SQFHQMKIKNLNIQAYGEQLTDH*VPRYSL Trigger: TAGAGAGTATCTTGGAACCAAATGGTCTGTCAGTTG...TTCCCCGTAGGCTTGTATGTTTAAATTCTTGATCTTCATTTGGTGAAACTGGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS CCA 72 bp | ACCGTGAAGTTAGGCGAGGAGGCTGGGCGACCGCGCTaGGGCACCCAAACCCTAGCGTTTCCAGGAGACGAA | + |
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Preference number: 6 (lower is better) Translates to: TVKLGEEAGRPR*GTQTLAFPGDE Trigger: TTCGTCTCCTGGAAACGCTAGGGTTTGGGTGCCCCAGCGCGGTCGCCCAGCCTCCTCGCCTAACTTCACGGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS TCA 72 bp | CATCCCACCACGTGTGAGCCAGGGCCTGGAAGTTTTTaGCCTCCCTGCTGTCAACTGTTGTTTGTGAAGTAC | + |
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Preference number: 6 (lower is better) Translates to: HPTTCEPGPGSF*PPCCQLLFVKY Trigger: GTACTTCACAAACAACAGTTGACAGCAGGGAGGTCAAAAACTTCCAGGCCCTGGCTCACACGTGGTGGGATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS CAA 72 bp | GCGCTCTCATCCACGGCCTCCTCCAGGGAACACACTTaGTACTGTATCCTCTTATCCAGGACTGGATCAAAG | + |
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Preference number: 6 (lower is better) Translates to: ALSSTASSREHT*YCILLSRTGSK Trigger: CTTTGATCCAGTCCTGGATAAGAGGATACAGTACAAAGTGTGTTCCCTGGAGGAGGCCGTGGATGAGAGCGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS CAA 90 bp | AAACACTCTGCGCTCTCATCCACGGCCTCCTCCAGGGAACACACTTaGTACTGTATCCTCTTATCCAGGACTGGATCAAAGGACTTATGG | + |
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Preference number: 6 (lower is better) Translates to: KHSALSSTASSREHT*YCILLSRTGSKDLW Trigger: CCATAAGTCCTTTGATCCAGTCCTGGATAAGAGGATACAGTACAAAGTGTGTTCCCTGGAGGAGGCCGTGGATGAGAGCGCAGAGTGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS TCA 72 bp | TCTCTAATGAATGGCACCCGTAGGTCATTCATAGAATaGAGAGGCGCAAACTTTCCGTACTCATCCCACCAC | + |
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Preference number: 6 (lower is better) Translates to: SLMNGTRRSFIE*RGANFPYSSHH Trigger: GTGGTGGGATGAGTACGGAAAGTTTGCGCCTCTTCATTCTATGAATGACCTACGGGTGCCATTCATTAGAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS CAA 72 bp | CCACGTATGAGTGCCTTTTGGAACAATGCCTGCAATTaGCTCTGCGAAAACAATTCCCAAGGCATAGGACAG | + |
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Preference number: 6 (lower is better) Translates to: PRMSAFWNNACN*LCENNSQGIGQ Trigger: CTGTCCTATGCCTTGGGAATTGTTTTCGCAGAGCAAATTGCAGGCATTGTTCCAAAAGGCACTCATACGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS TCA 72 bp | GAAGTTTTTGACCTCCCTGCTGTCAACTGTTGTTTGTaGAGTACTGTACAATCTCTTCCAAGGGGTCCTGTA | + |
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Preference number: 6 (lower is better) Translates to: EVFDLPAVNCCL*STVQSLPRGPV Trigger: TACAGGACCCCTTGGAAGAGATTGTACAGTACTTCACAAACAACAGTTGACAGCAGGGAGGTCAAAAACTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS GCA 72 bp | ATCCTCTTATCCAGGACTGGATCAAAGGACTTATGGTaGTGTGCTATCTTAATGTTTTCAGCCACGGGATCA | + |
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Preference number: 6 (lower is better) Translates to: ILLSRTGSKDLW*CAILMFSATGS Trigger: TGATCCCGTGGCTGAAAACATTAAGATAGCACAGCACCATAAGTCCTTTGATCCAGTCCTGGATAAGAGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS CCA 72 bp | TGTATCCTCTTATCCAGGACTGGATCAAAGGACTTATaGTGCTGTGCTATCTTAATGTTTTCAGCCACGGGA | + |
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Preference number: 6 (lower is better) Translates to: CILLSRTGSKDL*CCAILMFSATG Trigger: TCCCGTGGCTGAAAACATTAAGATAGCACAGCACCATAAGTCCTTTGATCCAGTCCTGGATAAGAGGATACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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| CDS CCA 72 bp | GGAACACACTTTGTACTGTATCCTCTTATCCAGGACTaGATCAAAGGACTTATGGTGCTGTGCTATCTTAAT | + |
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Preference number: 6 (lower is better) Translates to: GTHFVLYPLIQD*IKGLMVLCYLN Trigger: ATTAAGATAGCACAGCACCATAAGTCCTTTGATCCAGTCCTGGATAAGAGGATACAGTACAAAGTGTGTTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029909.3 |
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