RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for COL4A3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079465

Ensembl transcript IDs: ENSMUST00000113457.9, ENSMUST00000125563.8, ENSMUST00000152664.2

Found 354 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTAGGGAAGGGGGTGAAGCAGCAGAGGATGGGCTTCCTGCCTGCGTaGGAGTCTCCACACACGGGGTTTGTTATCTCCTTTGAGGGTAGA +
Preference number: 1 (lower is better)
Translates to: VGKGVKQQRMGFLPA*ESPHTGFVISFEGR
Trigger: TCTACCCTCAAAGGAGATAACAAACCCCGTGTGTGGAGACTCTCACGCAGGCAGGAAGCCCATCCTCTGCTGCTTCACCCCCTTCCCTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR TCA 90 bp GCCTCATTTATTCTGTGTTCTAGCCCTTACACCACTCAGCAGCTCTaGCCCTCCAGTTCTCTTCACGGTGTGCTTGATGGTATACTCCCT +
Preference number: 1 (lower is better)
Translates to: ASFILCSSPYTTQQL*PSSSLHGVLDGILP
Trigger: AGGGAGTATACCATCAAGCACACCGTGAAGAGAACTGGAGGGTCAGAGCTGCTGAGTGGTGTAAGGGCTAGAACACAGAATAAATGAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR CCA 90 bp TCAGCTCTTTGGGTACAACTGGAATGTGATTTCAGCGATATTCTGTaGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAAACCTACAGGT +
Preference number: 1 (lower is better)
Translates to: SALWVQLECDFSDIL*QAVAFPQGTLKPTG
Trigger: ACCTGTAGGTTTCAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATCGCTGAAATCACATTCCAGTTGTACCCAAAGAGCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR GCA 90 bp AGAGAGACAAAGGTGAAAAGGATTGTGGCCAGTTTCTTGGGTGTGTaGCTATTGAGTGGAGAACATGAGAGGATGATGAAAACTTTGAAA +
Preference number: 1 (lower is better)
Translates to: RETKVKRIVASFLGV*LLSGEHERMMKTLK
Trigger: TTTCAAAGTTTTCATCATCCTCTCATGTTCTCCACTCAATAGGCACACACCCAAGAAACTGGCCACAATCCTTTTCACCTTTGTCTCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR TCA 90 bp CAGCACCAGTCTAGTAGTGAAATAGATTACCCTGAAAGTCACCAGTaGGTTTTAAAGAGAGACAAAGGTGAAAAGGATTGTGGCCAGTTT +
Preference number: 1 (lower is better)
Translates to: QHQSSSEIDYPESHQ*VLKRDKGEKDCGQF
Trigger: AAACTGGCCACAATCCTTTTCACCTTTGTCTCTCTTTAAAACTCACTGGTGACTTTCAGGGTAATCTATTTCACTACTAGACTGGTGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR GCA 90 bp CTTGTAGTGGTCACACGAATGGTAAAGAATGACAACCCTTGTCTGTaGTCTTGGGTCACATTTTCCAAATACAAAGCAGTTGAGTTTACA +
Preference number: 1 (lower is better)
Translates to: LVVVTRMVKNDNPCL*SWVTFSKYKAVEFT
Trigger: TGTAAACTCAACTGCTTTGTATTTGGAAAATGTGACCCAAGAGCACAGACAAGGGTTGTCATTCTTTACCATTCGTGTGACCACTACAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR GCA 90 bp AAAACTTGTGGTGATTTGGGGGTCATCCTGGGTTGTACAATGAGATaGTTCTCATCAAGACAAGACACAGATTTCTGTTTGCTAGTTACA +
Preference number: 1 (lower is better)
Translates to: KTCGDLGVILGCTMR*FSSRQDTDFCLLVT
Trigger: TGTAACTAGCAAACAGAAATCTGTGTCTTGTCTTGATGAGAAGCATCTCATTGTACAACCCAGGATGACCCCCAAATCACCACAAGTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR GCA 90 bp AAGACAAGACACAGATTTCTGTTTGCTAGTTACAGTTTCAAACTTTaGAGGTTTAGAATGATCTACAATGGGCAATTAGGACAAGCTCCT +
Preference number: 1 (lower is better)
Translates to: KTRHRFLFASYSFKL*RFRMIYNGQLGQAP
Trigger: AGGAGCTTGTCCTAATTGCCCATTGTAGATCATTCTAAACCTGCAAAGTTTGAAACTGTAACTAGCAAACAGAAATCTGTGTCTTGTCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR GCA 90 bp GTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGGAGAACATGAGAGGATGATGTCTCTCACTACCCCCTaGACCGCCGGTCCAGTCCAG +
Preference number: 2 (lower is better)
Translates to: VASFLGVCLLSGEHERMMSLTTP*TAGPVQ
Trigger: CTGGACTGGACCGGCGGTGCAGGGGGTAGTGAGAGA...CATCATCCTCTCATGTTCTCCACTCAATAGGCACACACCCAAGAAACTGGCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR CAA 90 bp GTGGCAGTGCCTGTGCTAGTGAATGCCACCTATATGTGGGTATCCTaGAATGCCACCTATATGTGGGTATCCTTGGAGGCCAGCGGGGTC +
Preference number: 2 (lower is better)
Translates to: VAVPVLVNATYMWVS*NATYMWVSLEASGV
Trigger: GACCCCGCTGGCCTCCAAGGATACCCACATATAGGTGGCATTCAAGGATACCCACATATAGGTGGCATTCACTAGCACAGGCACTGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR CAA 90 bp AATGCCACCTATATGTGGGTATCCTTGGAGGCCAGCGGGGTCCCTTaGAGCAGTCCTGAGCTGCATGACCTGGGTATTGAGAACTATACT +
Preference number: 2 (lower is better)
Translates to: NATYMWVSLEASGVP*SSPELHDLGIENYT
Trigger: AGTATAGTTCTCAATACCCAGGTCATGCAGCTCAGGACTGCTCAAAGGGACCCCGCTGGCCTCCAAGGATACCCACATATAGGTGGCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR CCA 90 bp TGGAAGGAACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCTTCAGCGATATTCTGTaGCAAGCTGTTGCCTTTCCA +
Preference number: 2 (lower is better)
Translates to: WKEPHSFAQEWETRNTPCFSDIL*QAVAFP
Trigger: TGGAAAGGCAACAGCTTGCCACAGAATATCGCTGAA...GCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTTCCTTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR CAA 90 bp TTTGTATATCTAGCTGAGCGTGGGTGCAGAGTCCAGAAGTGGATGTaGGGTCATCTGGAAGAGGCTACTGTGAAACAGTACCAGTGTGGG +
Preference number: 2 (lower is better)
Translates to: FVYLAERGCRVQKWM*GHLEEATVKQYQCG
Trigger: CCCACACTGGTACTGTTTCACAGTAGCCTCTTCCAGATGACCCAACATCCACTTCTGGACTCTGCACCCACGCTCAGCTAGATATACAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR GCA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACACTAGCTGAGCGTGGGTaGAGAGTCCAGAAGTGGATG +
Preference number: 2 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTLAERG*RVQKWM
Trigger: CATCCACTTCTGGACTCTGCACCCACGCTCAGCTAG...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR CCA 90 bp GAGACAAAGGTGAAAAGGATTGTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTTCCTTTGCTCAGGAGTaGGAGACAAGGAACACACCG +
Preference number: 2 (lower is better)
Translates to: ETKVKRIVASFLGVCLLSSFAQE*ETRNTP
Trigger: CGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGA...ACTCAATAGGCACACACCCAAGAAACTGGCCACAATCCTTTTCACCTTTGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR GCA 90 bp CAGAAGAAGAAAGGGGCCTATGAGCAAATGAAGGGTAGCTGTTGTGACATCAGCAGGTTTGCCTCACAATaGCTGGCCTCTTTGAGTCTT +
Preference number: 2 (lower is better)
Translates to: QKKKGAYEQMKGSCCDISRFASQ*LASLSL
Trigger: AAGACTCAAAGAGGCCAGGCATTGTGAGGCAAACCT...GCTGATGTCACAACAGCTACCCTTCATTTGCTCATAGGCCCCTTTCTTCTTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR CCA 90 bp GAGACAAAGGTGAAAAGGATTGTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTTCCAGAAGTGGATGTTaGGTCATCTGGAAGAGGCTA +
Preference number: 2 (lower is better)
Translates to: ETKVKRIVASFLGVCLLSSRSGC*VIWKRL
Trigger: TAGCCTCTTCCAGATGACCCAACATCCACTTCTGGA...ACTCAATAGGCACACACCCAAGAAACTGGCCACAATCCTTTTCACCTTTGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR GCA 90 bp ACCGCCGGTCCAGTCCAGTATATGGGAAATAGTTTGGAACTGAAGAAAACAACTTCTGTGGCAAGCTGTTaGCTTTCCACAGGGAACTTT +
Preference number: 2 (lower is better)
Translates to: TAGPVQYMGNSLELKKTTSVASC*LSTGNF
Trigger: AAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGA...AGTTGTTTTCTTCAGTTCCAAACTATTTCCCATATACTGGACTGGACCGGCGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR GCA 90 bp CAGAAGAAGAAAGGGGCCTATGAGCAAATGAAGGGTAGCTGTTGTGACATCAGCGGAGTGGGGATAAAGTaGACATTTAGTAAGCAGTGT +
Preference number: 2 (lower is better)
Translates to: QKKKGAYEQMKGSCCDISGVGIK*TFSKQC
Trigger: ACACTGCTTACTAAATGTGCACTTTATCCCCACTCC...GCTGATGTCACAACAGCTACCCTTCATTTGCTCATAGGCCCCTTTCTTCTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR CCA 90 bp GTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGGAGAACATGAGAGGATGATGCCTTGTTTTCACTACTaGAATGTATGTGGGACAACA +
Preference number: 2 (lower is better)
Translates to: VASFLGVCLLSGEHERMMPCFHY*NVCGTT
Trigger: TGTTGTCCCACATACATTCCAGTAGTGAAAACAAGG...CATCATCCTCTCATGTTCTCCACTCAATAGGCACACACCCAAGAAACTGGCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR TCA 90 bp CAGAGAAACCAGCACTCTGAACTACTGAACCATTTCTCCAGCCACATAGGAAATGGTACAACTGGAATGTaGTTTCAGCGATATTCTGTG +
Preference number: 2 (lower is better)
Translates to: QRNQHSELLNHFSSHIGNGTTGM*FQRYSV
Trigger: CACAGAATATCGCTGAAATCACATTCCAGTTGTACC...ATTTCCTATGTGGCTGGAGAAATGGTTCAGTAGTTCAGAGTGCTGGTTTCTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR TCA 90 bp GAGACAAAGGTGAAAAGGATTGTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTAACAGCAACCATAGCTaGGACTCTTTGTTTGTTTTC +
Preference number: 2 (lower is better)
Translates to: ETKVKRIVASFLGVCLLSNSNHS*DSLFVF
Trigger: GAAAACAAACAAAGAGTCTCAGCTATGGTTGCTGTT...ACTCAATAGGCACACACCCAAGAAACTGGCCACAATCCTTTTCACCTTTGTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR GCA 90 bp AGACACAGATTTCTGTTTGCTAGTTACAGTTTCAAACTTTGCAGGTTTAGAATGCCTGAATGCCACAGCTaGTACTCCTACACTGGCCAA +
Preference number: 2 (lower is better)
Translates to: RHRFLFASYSFKLCRFRMPECHS*YSYTGQ
Trigger: TTGGCCAGTGTAGGAGTAGCAGCTGTGGCATTCAGG...CATTCTAAACCTGCAAAGTTTGAAACTGTAACTAGCAAACAGAAATCTGTGTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR GCA 90 bp GATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAAACCTACAGGTTGTGTAGTGAAACTTTaGACTACTACATCTTTAAGG +
Preference number: 2 (lower is better)
Translates to: DILWQAVAFPQGTLKPTGCVVKL*TTTSLR
Trigger: CCTTAAAGATGTAGTAGTGCAAAGTTTCACTACACA...ACCTGTAGGTTTCAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR CCA 90 bp AGACACAGATTTCTGTTTGCTAGTTACAGTTTCAAACTTTGCAGGTTTAGAATGCTGCTACTCCTACACTaGCCAAGGAGATTAGTCCTT +
Preference number: 2 (lower is better)
Translates to: RHRFLFASYSFKLCRFRMLLLLH*PRRLVL
Trigger: AAGGACTAATCTCCTTGGCCAGTGTAGGAGTAGCAG...CATTCTAAACCTGCAAAGTTTGAAACTGTAACTAGCAAACAGAAATCTGTGTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR CAA 90 bp GTCAAGAAATACACTCAAAGGTTTGCCTCACAATGCCTGGCCTCTTaGAGTCTTCAAATAGTACGACACTATCTGATTATTAAAAAGTTC +
Preference number: 2 (lower is better)
Translates to: VKKYTQRFASQCLAS*SLQIVRHYLIIKKF
Trigger: GAACTTTTTAATAATCAGATAGTGTCGTACTATTTGAAGACTCAAAGAGGCCAGGCATTGTGAGGCAAACCTTTGAGTGTATTTCTTGAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR GCA 90 bp AGACACAGATTTCTGTTTGCTAGTTACAGTTTCAAACTTTGCAGGTTTAGAATGCTTGTAATGAGATGTTaGATGTCTCAGCTCAGGTGT +
Preference number: 2 (lower is better)
Translates to: RHRFLFASYSFKLCRFRMLVMRC*MSQLRC
Trigger: ACACCTGAGCTGAGACATGCAACATCTCATTACAAG...CATTCTAAACCTGCAAAGTTTGAAACTGTAACTAGCAAACAGAAATCTGTGTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR TCA 90 bp AGACACAGATTTCTGTTTGCTAGTTACAGTTTCAAACTTTGCAGGTTTAGAATGTCACAGACTAACGAATaGAATGCTTTCTTGTGTAGT +
Preference number: 2 (lower is better)
Translates to: RHRFLFASYSFKLCRFRMSQTNE*NAFLCS
Trigger: ACTACACAAGAAAGCATTTCATTCGTTAGTCTGTGA...CATTCTAAACCTGCAAAGTTTGAAACTGTAACTAGCAAACAGAAATCTGTGTCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR CCA 90 bp AGACACAGATTTCTGTTTGCTAGTTACAGTTTCAAACTTTGCAGGTTTAGAATGCTACTGGAATGTATGTaGGACAACAGGATATTTTTC +
Preference number: 2 (lower is better)
Translates to: RHRFLFASYSFKLCRFRMLLECM*DNRIFF
Trigger: GAAAAATATCCTGTTGTCCCACATACATTCCAGTAG...CATTCTAAACCTGCAAAGTTTGAAACTGTAACTAGCAAACAGAAATCTGTGTCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR TCA 72 bp GGGGTGAAGCAGCAGAGGATGGGCTTCCTGCCTGCGTaGGAGTCTCCACACACGGGGTTTGTTATCTCCTTT +
Preference number: 3 (lower is better)
Translates to: GVKQQRMGFLPA*ESPHTGFVISF
Trigger: AAAGGAGATAACAAACCCCGTGTGTGGAGACTCTCACGCAGGCAGGAAGCCCATCCTCTGCTGCTTCACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR GCA 72 bp GGTGTCAGGGAGGAGATGGAAGGAACCGCACTCCTTTaGTCAGGAGTGGGAGACAAGGAACACACCGTGCAT +
Preference number: 3 (lower is better)
Translates to: GVREEMEGTALL*SGVGDKEHTVH
Trigger: ATGCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTTCCTTCCATCTCCTCCCTGACACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR CCA 72 bp ACCTATATGTGGGTATCCTTGAATGCCACCTATATGTaGGTATCCTTGGAGGCCAGCGGGGTCCCTTTGAGC +
Preference number: 3 (lower is better)
Translates to: TYMWVSLNATYM*VSLEASGVPLS
Trigger: GCTCAAAGGGACCCCGCTGGCCTCCAAGGATACCCACATATAGGTGGCATTCAAGGATACCCACATATAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR TCA 72 bp ATTCTGTGTTCTAGCCCTTACACCACTCAGCAGCTCTaGCCCTCCAGTTCTCTTCACGGTGTGCTTGATGGT +
Preference number: 3 (lower is better)
Translates to: ILCSSPYTTQQL*PSSSLHGVLDG
Trigger: ACCATCAAGCACACCGTGAAGAGAACTGGAGGGTCAGAGCTGCTGAGTGGTGTAAGGGCTAGAACACAGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR CAA 90 bp GTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGGAGAACATGAGAGGATGATGCTCCACACACGGGGTTaGTTATCTCCTTTGAGGGTA +
Preference number: 3 (lower is better)
Translates to: VASFLGVCLLSGEHERMMLHTRG*LSPLRV
Trigger: TACCCTCAAAGGAGATAACAAACCCCGTGTGTGGAG...CATCATCCTCTCATGTTCTCCACTCAATAGGCACACACCCAAGAAACTGGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR GCA 72 bp AGGCGAGGCAAGTGCTTGTCCAGCACCCTCAGAGCCTaGACTTGTGAACATAATGAAAGAAAAACCTTTCCA +
Preference number: 3 (lower is better)
Translates to: RRGKCLSSTLRA*TCEHNERKTFP
Trigger: TGGAAAGGTTTTTCTTTCATTATGTTCACAAGTGCAGGCTCTGAGGGTGCTGGACAAGCACTTGCCTCGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125563.8
3UTR CCA 72 bp CCTGAGCTGCATGACCTGGGTATTGAGAACTATACTTaGGTTCTCTGCAGAGAAACCAGCACTCTGAACTAC +
Preference number: 3 (lower is better)
Translates to: PELHDLGIENYT*VLCRETSTLNY
Trigger: GTAGTTCAGAGTGCTGGTTTCTCTGCAGAGAACCCAAGTATAGTTCTCAATACCCAGGTCATGCAGCTCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR CAA 90 bp GTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGGAGAACATGAGAGGATGATGTTCAGGAAGTTTCCTTaGGTCCTAGCCTTGTGCATA +
Preference number: 3 (lower is better)
Translates to: VASFLGVCLLSGEHERMMFRKFP*VLALCI
Trigger: TATGCACAAGGCTAGGACCAAAGGAAACTTCCTGAA...CATCATCCTCTCATGTTCTCCACTCAATAGGCACACACCCAAGAAACTGGCCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR CAA 90 bp CAGAAGAAGAAAGGGGCCTATGAGCAAATGAAGGGTAGCTGTTGTGACATCAGCATTGTGGCCAGTTTCTaGGGTGTGTGCCTATTGAGT +
Preference number: 3 (lower is better)
Translates to: QKKKGAYEQMKGSCCDISIVASF*GVCLLS
Trigger: ACTCAATAGGCACACACCCAAGAAACTGGCCACAAT...GCTGATGTCACAACAGCTACCCTTCATTTGCTCATAGGCCCCTTTCTTCTTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR CAA 90 bp CTGAGACTCTTTGTTTGTTTTCCGTGTAGGGAAGGGGGTGAAGCAGCAGAGGATGGTTTGTTATCTCCTTaGAGGGTAGATCAGAAGCAA +
Preference number: 3 (lower is better)
Translates to: LRLFVCFPCREGGEAAEDGLLSP*RVDQKQ
Trigger: TTGCTTCTGATCTACCCTCAAAGGAGATAACAAACC...ATCCTCTGCTGCTTCACCCCCTTCCCTACACGGAAAACAAACAAAGAGTCTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR CAA 90 bp TGGTCTCTTTCCACATGGTTGCGAAGAATCTATAACATAAAAATCATGGCGTACAGGAACCGCACTCCTTaGCTCAGGAGTGGGAGACAA +
Preference number: 3 (lower is better)
Translates to: WSLSTWLRRIYNIKIMAYRNRTP*LRSGRQ
Trigger: TTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTTCCT...GTACGCCATGATTTTTATGTTATAGATTCTTCGCAACCATGTGGAAAGAGACCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR-3UTR CAA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACACAATGCCTGGCCTCTTaGAGTCTTCAAATAGTACGA +
Preference number: 3 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTQCLAS*SLQIVR
Trigger: TCGTACTATTTGAAGACTCAAAGAGGCCAGGCATTG...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR TCA 72 bp ACTATACTTGGGTTCTCTGCAGAGAAACCAGCACTCTaGACTACTGAACCATTTCTCCAGCCACATAGGAAA +
Preference number: 3 (lower is better)
Translates to: TILGFSAEKPAL*TTEPFLQPHRK
Trigger: TTTCCTATGTGGCTGGAGAAATGGTTCAGTAGTTCAGAGTGCTGGTTTCTCTGCAGAGAACCCAAGTATAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR GCA 72 bp TGGGTCAAGAAATACACTCAAAGGTTTGCCTCACAATaGCTGGCCTCTTTGAGTCTTCAAATAGTACGACAC +
Preference number: 3 (lower is better)
Translates to: WVKKYTQRFASQ*LASLSLQIVRH
Trigger: GTGTCGTACTATTTGAAGACTCAAAGAGGCCAGGCATTGTGAGGCAAACCTTTGAGTGTATTTCTTGACCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR CCA 72 bp TGGGTACAACTGGAATGTGATTTCAGCGATATTCTGTaGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAAA +
Preference number: 3 (lower is better)
Translates to: WVQLECDFSDIL*QAVAFPQGTLK
Trigger: TTTCAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATCGCTGAAATCACATTCCAGTTGTACCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR TCA 72 bp AAATGTTTGCGTCGGATAAACCTGATTATTTCCTGGTaGAATTATTTAAGGTCGGCGTTGATAGGAGTGGGG +
Preference number: 3 (lower is better)
Translates to: KCLRRINLIISW*NYLRSALIGVG
Trigger: CCCCACTCCTATCAACGCCGACCTTAAATAATTTCACCAGGAAATAATCAGGTTTATCCGACGCAAACATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR TCA 72 bp AAAATGTCTTGTAGTGGTCACACGAATGGTAAAGAATaGCAACCCTTGTCTGTGCTCTTGGGTCACATTTTC +
Preference number: 3 (lower is better)
Translates to: KMSCSGHTNGKE*QPLSVLLGHIF
Trigger: GAAAATGTGACCCAAGAGCACAGACAAGGGTTGTCATTCTTTACCATTCGTGTGACCACTACAAGACATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR GCA 72 bp GTCACACGAATGGTAAAGAATGACAACCCTTGTCTGTaGTCTTGGGTCACATTTTCCAAATACAAAGCAGTT +
Preference number: 3 (lower is better)
Translates to: VTRMVKNDNPCL*SWVTFSKYKAV
Trigger: AACTGCTTTGTATTTGGAAAATGTGACCCAAGAGCACAGACAAGGGTTGTCATTCTTTACCATTCGTGTGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR CCA 72 bp ACACAATCAACATTTAGTCAGCTCTTTGGGTACAACTaGAATGTGATTTCAGCGATATTCTGTGGCAAGCTG +
Preference number: 3 (lower is better)
Translates to: TQSTFSQLFGYN*NVISAIFCGKL
Trigger: CAGCTTGCCACAGAATATCGCTGAAATCACATTCCAGTTGTACCCAAAGAGCTGACTAAATGTTGATTGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR TCA 72 bp TCTAGTAGTGAAATAGATTACCCTGAAAGTCACCAGTaGGTTTTAAAGAGAGACAAAGGTGAAAAGGATTGT +
Preference number: 3 (lower is better)
Translates to: SSSEIDYPESHQ*VLKRDKGEKDC
Trigger: ACAATCCTTTTCACCTTTGTCTCTCTTTAAAACTCACTGGTGACTTTCAGGGTAATCTATTTCACTACTAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR TCA 72 bp TGTATTTTATTGCTCACTCTTAGAAGTACAAATGACTaGCTGTTGATATGGCTTCTTTGGGCATTAAGGTGT +
Preference number: 3 (lower is better)
Translates to: CILLLTLRSTND*LLIWLLWALRC
Trigger: ACACCTTAATGCCCAAAGAAGCCATATCAACAGTCAGTCATTTGTACTTCTAAGAGTGAGCAATAAAATACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR GCA 72 bp ATGTATAATTTACTCATAAACATCTGGGAAGTACTATaGACGGGCTGTATTTTATTGCTCACTCTTAGAAGT +
Preference number: 3 (lower is better)
Translates to: MYNLLINIWEVL*TGCILLLTLRS
Trigger: ACTTCTAAGAGTGAGCAATAAAATACAGCCCGTGCATAGTACTTCCCAGATGTTTATGAGTAAATTATACAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp TGGAAGGAACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCGTCCTGGGGAGCCCTTaGGTCCCTGTGGTCCAGGCA +
Preference number: 4 (lower is better)
Translates to: WKEPHSFAQEWETRNTPCVLGSP*VPVVQA
Trigger: TGCCTGGACCACAGGGACCCAAGGGCTCCCCAGGAC...GCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTTCCTTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR TCA 90 bp TGGAAGGAACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCATCCTGGATCACCTCTaGCACCGGGAAGACCGGGGG +
Preference number: 4 (lower is better)
Translates to: WKEPHSFAQEWETRNTPCILDHL*HREDRG
Trigger: CCCCCGGTCTTCCCGGTGTCAGAGGTGATCCAGGAT...GCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTTCCTTCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp TGGAAGGAACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCGTCACCTGGACATCCTaGAGGTCCTGGAGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: WKEPHSFAQEWETRNTPCVTWTS*RSWRAW
Trigger: CCAGGCCCTCCAGGACCTCCAGGATGTCCAGGTGAC...GCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTTCCTTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp TGGAAGGAACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCAAGCCGGGAAGTCCTTaGGTGCCCCTGGGTCCTGGT +
Preference number: 4 (lower is better)
Translates to: WKEPHSFAQEWETRNTPCKPGSP*VPLGPG
Trigger: ACCAGGACCCAGGGGCACCCAAGGACTTCCCGGCTT...GCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTTCCTTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR TCA 90 bp CTGAGACTCTTTGTTTGTTTTCCGTGTAGGGAAGGGGGTGAAGCAGCAGAGGATGCCTGGTGGACCTGGTaGGCCAGGACATCCCAGGGG +
Preference number: 4 (lower is better)
Translates to: LRLFVCFPCREGGEAAEDAWWTW*ARTSQG
Trigger: CCCCTGGGATGTCCTGGCTCACCAGGTCCACCAGGC...ATCCTCTGCTGCTTCACCCCCTTCCCTACACGGAAAACAAACAAAGAGTCTCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp AACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCATCCACAGCCAGGGTCTCCCTTTaGCCCGGTATCACCTCTTCG +
Preference number: 4 (lower is better)
Translates to: NRTPLLRSGRQGTHRASTARVSL*PGITSS
Trigger: CGAAGAGGTGATACCGGGCCAAAGGGAGACCCTGGC...TGTGGATGCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp TGGAAGGAACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCGCCCTTTGGTCCTGGTaGTCCTGGTCTTGCACCTTC +
Preference number: 4 (lower is better)
Translates to: WKEPHSFAQEWETRNTPCALWSW*SWSCTF
Trigger: GAAGGTGCAAGACCAGGACCACCAGGACCAAAGGGC...GCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTTCCTTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp AACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCATCCACACCATGCTTCCTGGCATaGCGTGTGGTCCTGGTCTTC +
Preference number: 4 (lower is better)
Translates to: NRTPLLRSGRQGTHRASTPCFLA*RVVLVF
Trigger: GAAGACCAGGACCACACGGCATGCCAGGAAGCATGG...TGTGGATGCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGGAGAACATGAGAGGATGATGTGGACCGGCAGGCCCTaGAAAACCTGGGAGTCCCGG +
Preference number: 4 (lower is better)
Translates to: VASFLGVCLLSGEHERMMWTGRP*KTWESR
Trigger: CCGGGACTCCCAGGTTTTCCAGGGCCTGCCGGTCCA...CATCATCCTCTCATGTTCTCCACTCAATAGGCACACACCCAAGAAACTGGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp AACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCATCCACACGGATGGTTCTCCCTTaGCTCCTGGGATGCCTGGTT +
Preference number: 4 (lower is better)
Translates to: NRTPLLRSGRQGTHRASTRMVLP*LLGCLV
Trigger: AACCAGGCATCCCAGGAGCCAAGGGAGAACCATCCG...TGTGGATGCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGGAGAACATGAGAGGATGATGCTCGCCTGGTGGTCCTaGGAATCCTGGAGCTCCCGG +
Preference number: 4 (lower is better)
Translates to: VASFLGVCLLSGEHERMMLAWWS*ESWSSR
Trigger: CCGGGAGCTCCAGGATTCCCAGGACCACCAGGCGAG...CATCATCCTCTCATGTTCTCCACTCAATAGGCACACACCCAAGAAACTGGCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CCTCATTTATTCTGTGTTCTAGCCCTTACACCACTCAGCAGCTCTGACCCTCCAACCAGGGCTCCCTTTTaGGCCTGGGTAGGCCCCCAG +
Preference number: 4 (lower is better)
Translates to: PHLFCVLALTPLSSSDPPTRAPF*AWVGPQ
Trigger: CTGGGGGCCTACCCAGGCCCAAAAGGGAGCCCTGGT...TGGAGGGTCAGAGCTGCTGAGTGGTGTAAGGGCTAGAACACAGAATAAATGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp AACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCATCCACAGACCTGGTGGTCCTTTaGGCCCAACTGGTCCTGGAT +
Preference number: 4 (lower is better)
Translates to: NRTPLLRSGRQGTHRASTDLVVL*AQLVLD
Trigger: ATCCAGGACCAGTTGGGCCCAAAGGACCACCAGGTC...TGTGGATGCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR TCA 90 bp CTGAGACTCTTTGTTTGTTTTCCGTGTAGGGAAGGGGGTGAAGCAGCAGAGGATTCCCGGGCAGGCCTCTaGGTCCAGGATCACCTGGAT +
Preference number: 4 (lower is better)
Translates to: LRLFVCFPCREGGEAAEDSRAGL*VQDHLD
Trigger: ATCCAGGTGATCCTGGACTCAGAGGCCTGCCCGGGA...ATCCTCTGCTGCTTCACCCCCTTCCCTACACGGAAAACAAACAAAGAGTCTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp CAGAAGAAGAAAGGGGCCTATGAGCAAATGAAGGGTAGCTGTTGTGACATCAGCAGGACCTGGGAGCCCTaGATAGCCTGGTGTGCCGGG +
Preference number: 4 (lower is better)
Translates to: QKKKGAYEQMKGSCCDISRTWEP*IAWCAG
Trigger: CCCGGCACACCAGGCTATGCAGGGCTCCCAGGTCCT...GCTGATGTCACAACAGCTACCCTTCATTTGCTCATAGGCCCCTTTCTTCTTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp CTGAGACTCTTTGTTTGTTTTCCGTGTAGGGAAGGGGGTGAAGCAGCAGAGGATCGGGAAGTCCTTGGGTaGCCCTGGGTCCTGGTATGC +
Preference number: 4 (lower is better)
Translates to: LRLFVCFPCREGGEAAEDREVLG*PWVLVC
Trigger: GCATACCAGGACCCAGGGGCACCCAAGGACTTCCCG...ATCCTCTGCTGCTTCACCCCCTTCCCTACACGGAAAACAAACAAAGAGTCTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp GTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGGAGAACATGAGAGGATGATGCCCCAGACCTGTCCATaGCTGGGATGCCAGGGTCTC +
Preference number: 4 (lower is better)
Translates to: VASFLGVCLLSGEHERMMPQTCP*LGCQGL
Trigger: GAGACCCTGGCATCCCAGGCATGGACAGGTCTGGGG...CATCATCCTCTCATGTTCTCCACTCAATAGGCACACACCCAAGAAACTGGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp TGGAAGGAACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCATTGTGGTGAATCGCTaGAGGCAGCTGCCCAGAGTA +
Preference number: 4 (lower is better)
Translates to: WKEPHSFAQEWETRNTPCIVVNR*RQLPRV
Trigger: TACTCTGGGCAGCTGCCTGCAGCGATTCACCACAAT...GCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTTCCTTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CAGAAGAAGAAAGGGGCCTATGAGCAAATGAAGGGTAGCTGTTGTGACATCAGCGAGTCCCGGAAGTCCTaGGGAGCCCTTGGGTCCCTG +
Preference number: 4 (lower is better)
Translates to: QKKKGAYEQMKGSCCDISESRKS*GALGSL
Trigger: CAGGGACCCAAGGGCTCCCCAGGACTTCCGGGACTC...GCTGATGTCACAACAGCTACCCTTCATTTGCTCATAGGCCCCTTTCTTCTTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGGAGAACATGAGAGGATGATGACCACTTGGACCCTGTaGGCCACGGGCTCCTTTGGG +
Preference number: 4 (lower is better)
Translates to: VASFLGVCLLSGEHERMMTTWTL*ATGSFG
Trigger: CCCAAAGGAGCCCGTGGCCCACAGGGTCCAAGTGGT...CATCATCCTCTCATGTTCTCCACTCAATAGGCACACACCCAAGAAACTGGCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GAGACAAAGGTGAAAAGGATTGTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTTCCAGGGGGACCACTTaGACCCTGTGGGCCACGGGC +
Preference number: 4 (lower is better)
Translates to: ETKVKRIVASFLGVCLLSSRGTT*TLWATG
Trigger: GCCCGTGGCCCACAGGGTCCAAGTGGTCCCCCTGGA...ACTCAATAGGCACACACCCAAGAAACTGGCCACAATCCTTTTCACCTTTGTCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGGAGAACATGAGAGGATGATGGACTCCAGGGGGCCCTaGGAAGCAGTGACACTCGGT +
Preference number: 4 (lower is better)
Translates to: VASFLGVCLLSGEHERMMDSRGP*EAVTLG
Trigger: ACCGAGTGTCACTGCTTCCCAGGGCCCCCTGGAGTC...CATCATCCTCTCATGTTCTCCACTCAATAGGCACACACCCAAGAAACTGGCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CTGAGACTCTTTGTTTGTTTTCCGTGTAGGGAAGGGGGTGAAGCAGCAGAGGATAACCAGGTAGACCTCTaGGGCCAGCCTGACCAGGGG +
Preference number: 4 (lower is better)
Translates to: LRLFVCFPCREGGEAAEDNQVDL*GQPDQG
Trigger: CCCCTGGTCAGGCTGGCCCCAGAGGTCTACCTGGTT...ATCCTCTGCTGCTTCACCCCCTTCCCTACACGGAAAACAAACAAAGAGTCTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CCTCATTTATTCTGTGTTCTAGCCCTTACACCACTCAGCAGCTCTGACCCTCCAAAGCCCGCCTCTTCCTaGAGTTCCAGGGAGGCCTGG +
Preference number: 4 (lower is better)
Translates to: PHLFCVLALTPLSSSDPPKPASS*SSREAW
Trigger: CCAGGCCTCCCTGGAACTCCAGGAAGAGGCGGGCTT...TGGAGGGTCAGAGCTGCTGAGTGGTGTAAGGGCTAGAACACAGAATAAATGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp AACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCATCCACATCCTGGCATGCCGTGTaGTCCTGGTCTTCCAGGATT +
Preference number: 4 (lower is better)
Translates to: NRTPLLRSGRQGTHRASTSWHAV*SWSSRI
Trigger: AATCCTGGAAGACCAGGACCACACGGCATGCCAGGA...TGTGGATGCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp AACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCATCCACATCCCCCTTATCTCCTTaGGGACCATGGATCCCTGTC +
Preference number: 4 (lower is better)
Translates to: NRTPLLRSGRQGTHRASTSPLSP*GPWIPV
Trigger: GACAGGGATCCATGGTCCCCAAGGAGATAAGGGGGA...TGTGGATGCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGGAGAACATGAGAGGATGATGTGGCCCACAGGGTCCTaGGATTCCTGGCAGTCCCAG +
Preference number: 4 (lower is better)
Translates to: VASFLGVCLLSGEHERMMWPTGS*DSWQSQ
Trigger: CTGGGACTGCCAGGAATCCCAGGACCCTGTGGGCCA...CATCATCCTCTCATGTTCTCCACTCAATAGGCACACACCCAAGAAACTGGCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR CAA 72 bp TATATGTGGGTATCCTTGGAGGCCAGCGGGGTCCCTTaGAGCAGTCCTGAGCTGCATGACCTGGGTATTGAG +
Preference number: 4 (lower is better)
Translates to: YMWVSLEASGVP*SSPELHDLGIE
Trigger: CTCAATACCCAGGTCATGCAGCTCAGGACTGCTCAAAGGGACCCCGCTGGCCTCCAAGGATACCCACATATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp TGGAAGGAACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCAGAGGCATTGTCCTTTaGCTTTGCAGACACAGCCCT +
Preference number: 4 (lower is better)
Translates to: WKEPHSFAQEWETRNTPCRGIVL*LCRHSP
Trigger: AGGGCTGTGTCTGCAAAGGCAAAGGACAATGCCTCT...GCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTTCCTTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp TGGAAGGAACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCGAACACCAGGAACCTTaGAGCAGTCTTGGAGTGCAT +
Preference number: 4 (lower is better)
Translates to: WKEPHSFAQEWETRNTPCEHQEP*SSLGVH
Trigger: ATGCACTCCAAGACTGCTCCAAGGTTCCTGGTGTTC...GCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTTCCTTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GAGACAAAGGTGAAAAGGATTGTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTTCCCGGAGGTCCTGGTaGACCGGCAGGCCCTGGAAA +
Preference number: 4 (lower is better)
Translates to: ETKVKRIVASFLGVCLLSSRRSW*TGRPWK
Trigger: TTTCCAGGGCCTGCCGGTCCACCAGGACCTCCGGGA...ACTCAATAGGCACACACCCAAGAAACTGGCCACAATCCTTTTCACCTTTGTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CCTCATTTATTCTGTGTTCTAGCCCTTACACCACTCAGCAGCTCTGACCCTCCAAGCCCCTGTTGCCTTTaGCTCCCTCAGTGCCAGGGA +
Preference number: 4 (lower is better)
Translates to: PHLFCVLALTPLSSSDPPSPCCL*LPQCQG
Trigger: TCCCTGGCACTGAGGGAGCCAAAGGCAACAGGGGCT...TGGAGGGTCAGAGCTGCTGAGTGGTGTAAGGGCTAGAACACAGAATAAATGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp AACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCATCCACATGGACCAGGAAATCCTaGGGGGCCAATGTCTCCTTT +
Preference number: 4 (lower is better)
Translates to: NRTPLLRSGRQGTHRASTWTRKS*GANVSF
Trigger: AAAGGAGACATTGGCCCCCCAGGATTTCCTGGTCCA...TGTGGATGCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CCTCATTTATTCTGTGTTCTAGCCCTTACACCACTCAGCAGCTCTGACCCTCCAAGGTCCATAGCCTGGTaGTCCAGCTGGTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: PHLFCVLALTPLSSSDPPRSIAW*SSWSCR
Trigger: CCTGCAGGACCAGCTGGACCACCAGGCTATGGACCT...TGGAGGGTCAGAGCTGCTGAGTGGTGTAAGGGCTAGAACACAGAATAAATGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CTGAGACTCTTTGTTTGTTTTCCGTGTAGGGAAGGGGGTGAAGCAGCAGAGGATACCTGGTGTTCCTGGTaGTCCAGGATCTCCGGGGAC +
Preference number: 4 (lower is better)
Translates to: LRLFVCFPCREGGEAAEDTWCSW*SRISGD
Trigger: GTCCCCGGAGATCCTGGACCACCAGGAACACCAGGT...ATCCTCTGCTGCTTCACCCCCTTCCCTACACGGAAAACAAACAAAGAGTCTCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGGAGAACATGAGAGGATGATGCCCCGATTGTCCAGGTaGCCCAGGTACGCCTCTTTC +
Preference number: 4 (lower is better)
Translates to: VASFLGVCLLSGEHERMMPRLSR*PRYASF
Trigger: GAAAGAGGCGTACCTGGGCCACCTGGACAATCGGGG...CATCATCCTCTCATGTTCTCCACTCAATAGGCACACACCCAAGAAACTGGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp AACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCATCCACACAGGGCATGAAGGAATaGCCGTGGTTTGACTGTGTC +
Preference number: 4 (lower is better)
Translates to: NRTPLLRSGRQGTHRASTQGMKE*PWFDCV
Trigger: GACACAGTCAAACCACGGCCATTCCTTCATGCCCTG...TGTGGATGCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR TCA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACATGCCTTTGGGGCCAGTaGGTCCCGGAAGTCCTGGGG +
Preference number: 4 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTCLWGQ*VPEVLG
Trigger: CCCCAGGACTTCCGGGACTCACTGGCCCCAAAGGCA...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR TCA 90 bp CTGAGACTCTTTGTTTGTTTTCCGTGTAGGGAAGGGGGTGAAGCAGCAGAGGATAGAACGGCATTGTGGTaGATCGCTGCAGGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: LRLFVCFPCREGGEAAEDRTALW*IAAGSC
Trigger: GCAGCTGCCTGCAGCGATTCACCACAATGCCGTTCT...ATCCTCTGCTGCTTCACCCCCTTCCCTACACGGAAAACAAACAAAGAGTCTCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp AACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCATCCACACTGGTAACCCTGGGTTaGCTCTGTTTCCTTTCTCAC +
Preference number: 4 (lower is better)
Translates to: NRTPLLRSGRQGTHRASTLVTLG*LCFLSH
Trigger: GTGAGAAAGGAAACAGAGGCAACCCAGGGTTACCAG...TGTGGATGCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACACTGGGAGTCCAGCAGTaGCTGGGGGTCCTTGGGGTC +
Preference number: 4 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTLGVQQ*LGVLGV
Trigger: GACCCCAAGGACCCCCAGGCACTGCTGGACTCCCAG...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACAACCGGGGGTACCTGGTaGTCCCGGGAAACCTGGTGG +
Preference number: 4 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTTGGTW*SRETWW
Trigger: CCACCAGGTTTCCCGGGAGCACCAGGTACCCCCGGT...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACAAAATCCCGGAGGTCCTaGTGGACCGGCAGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTKSRRS*WTGRPW
Trigger: CCAGGGCCTGCCGGTCCACCAGGACCTCCGGGATTT...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CTGAGACTCTTTGTTTGTTTTCCGTGTAGGGAAGGGGGTGAAGCAGCAGAGGATACGCTATCGCCCATGTaGCCTTTGGGTCCTCTGGGT +
Preference number: 4 (lower is better)
Translates to: LRLFVCFPCREGGEAAEDTLSPM*PLGPLG
Trigger: ACCCAGAGGACCCAAAGGCCACATGGGCGATAGCGT...ATCCTCTGCTGCTTCACCCCCTTCCCTACACGGAAAACAAACAAAGAGTCTCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAAACCTACAGGTGGTGCCCCTGGGTCCTaGTATGCACCTTCCTGGGGA +
Preference number: 4 (lower is better)
Translates to: DILWQAVAFPQGTLKPTGGAPGS*YAPSWG
Trigger: TCCCCAGGAAGGTGCATACCAGGACCCAGGGGCACC...ACCTGTAGGTTTCAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CCTCATTTATTCTGTGTTCTAGCCCTTACACCACTCAGCAGCTCTGACCCTCCAAGACCTGTCCATGCCTaGGATGCCAGGGTCTCCCTT +
Preference number: 4 (lower is better)
Translates to: PHLFCVLALTPLSSSDPPRPVHA*DARVSL
Trigger: AAGGGAGACCCTGGCATCCCAGGCATGGACAGGTCT...TGGAGGGTCAGAGCTGCTGAGTGGTGTAAGGGCTAGAACACAGAATAAATGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CTGAGACTCTTTGTTTGTTTTCCGTGTAGGGAAGGGGGTGAAGCAGCAGAGGATTCCTTTCTCGCCTGGTaGTCCTGGGAATCCTGGAGC +
Preference number: 4 (lower is better)
Translates to: LRLFVCFPCREGGEAAEDSFLAW*SWESWS
Trigger: GCTCCAGGATTCCCAGGACCACCAGGCGAGAAAGGA...ATCCTCTGCTGCTTCACCCCCTTCCCTACACGGAAAACAAACAAAGAGTCTCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGGAGAACATGAGAGGATGATGGTCACCTGGCAATCCTaGATCGCCCTTTGGTCCTGG +
Preference number: 4 (lower is better)
Translates to: VASFLGVCLLSGEHERMMVTWQS*IALWSW
Trigger: CCAGGACCAAAGGGCGATCCAGGATTGCCAGGTGAC...CATCATCCTCTCATGTTCTCCACTCAATAGGCACACACCCAAGAAACTGGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACAGAGTCCTGGAGGGCCTaGAGGGCCAGTGCTTCCTGG +
Preference number: 4 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTESWRA*RASASW
Trigger: CCAGGAAGCACTGGCCCTCCAGGCCCTCCAGGACTC...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GAGACAAAGGTGAAAAGGATTGTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGAGTCCAGCAGTGCCTaGGGGTCCTTGGGGTCCAAC +
Preference number: 4 (lower is better)
Translates to: ETKVKRIVASFLGVCLLSESSSA*GSLGSN
Trigger: GTTGGACCCCAAGGACCCCCAGGCACTGCTGGACTC...ACTCAATAGGCACACACCCAAGAAACTGGCCACAATCCTTTTCACCTTTGTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAAACCTACAGGTTGCTCCCGGGAAACCTaGTGGGCCCATGTCCCCTAC +
Preference number: 4 (lower is better)
Translates to: DILWQAVAFPQGTLKPTGCSRET*WAHVPY
Trigger: GTAGGGGACATGGGCCCACCAGGTTTCCCGGGAGCA...ACCTGTAGGTTTCAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp TGGAAGGAACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCAGCTCTGCCACTAATTaGAGCCATGTCCATTGGCAT +
Preference number: 4 (lower is better)
Translates to: WKEPHSFAQEWETRNTPCSSATN*SHVHWH
Trigger: ATGCCAATGGACATGGCTCCAATTAGTGGCAGAGCT...GCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTTCCTTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR CAA 72 bp GCTTCCTGCCTGCGTGAGAGTCTCCACACACGGGGTTaGTTATCTCCTTTGAGGGTAGATCAGAAGCAAGTC +
Preference number: 4 (lower is better)
Translates to: ASCLRESLHTRG*LSPLRVDQKQV
Trigger: GACTTGCTTCTGATCTACCCTCAAAGGAGATAACAAACCCCGTGTGTGGAGACTCTCACGCAGGCAGGAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR CAA 72 bp CTAGCTGAGCGTGGGTGCAGAGTCCAGAAGTGGATGTaGGGTCATCTGGAAGAGGCTACTGTGAAACAGTAC +
Preference number: 4 (lower is better)
Translates to: LAERGCRVQKWM*GHLEEATVKQY
Trigger: GTACTGTTTCACAGTAGCCTCTTCCAGATGACCCAACATCCACTTCTGGACTCTGCACCCACGCTCAGCTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR TCA 90 bp CTGAGACTCTTTGTTTGTTTTCCGTGTAGGGAAGGGGGTGAAGCAGCAGAGGATGGAATGGCCGTGGTTTaGCTGTGTCGGGTGAAGATG +
Preference number: 4 (lower is better)
Translates to: LRLFVCFPCREGGEAAEDGMAVV*LCRVKM
Trigger: CATCTTCACCCGACACAGTCAAACCACGGCCATTCC...ATCCTCTGCTGCTTCACCCCCTTCCCTACACGGAAAACAAACAAAGAGTCTCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp GTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGGAGAACATGAGAGGATGATGCCTGGATTACCCACTTaGCCCCAGGGTAGAGGTGTA +
Preference number: 4 (lower is better)
Translates to: VASFLGVCLLSGEHERMMPGLPT*PQGRGV
Trigger: TACACCTCTACCCTGGGGGCAAGTGGGTAATCCAGG...CATCATCCTCTCATGTTCTCCACTCAATAGGCACACACCCAAGAAACTGGCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp AACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCATCCACACATTTTCCCCAGCATTaGCTCTTTCTCCTGGAAAGC +
Preference number: 4 (lower is better)
Translates to: NRTPLLRSGRQGTHRASTHFPQH*LFLLES
Trigger: GCTTTCCAGGAGAAAGAGGCAATGCTGGGGAAAATG...TGTGGATGCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp ACCGCCGGTCCAGTCCAGTATATGGGAAATAGTTTGGAACTGAAGAAAACAACTATAGGAGTCTCCAGGTaGCCCCGAGGGTCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: TAGPVQYMGNSLELKKTTIGVSR*PRGSRR
Trigger: CCTCCTGGACCCTCGGGGCCACCTGGAGACTCCTAT...AGTTGTTTTCTTCAGTTCCAAACTATTTCCCATATACTGGACTGGACCGGCGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CCTCATTTATTCTGTGTTCTAGCCCTTACACCACTCAGCAGCTCTGACCCTCCAGAATCCAGGAGGTCCTaGAGGTCCTTGGTCCCCTTT +
Preference number: 4 (lower is better)
Translates to: PHLFCVLALTPLSSSDPPESRRS*RSLVPF
Trigger: AAAGGGGACCAAGGACCTCCAGGACCTCCTGGATTC...TGGAGGGTCAGAGCTGCTGAGTGGTGTAAGGGCTAGAACACAGAATAAATGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CTGAGACTCTTTGTTTGTTTTCCGTGTAGGGAAGGGGGTGAAGCAGCAGAGGATGGCTCCCTTTGGACCTaGCTCTCCTTGAGGTCCATA +
Preference number: 4 (lower is better)
Translates to: LRLFVCFPCREGGEAAEDGSLWT*LSLRSI
Trigger: TATGGACCTCAAGGAGAGCCAGGTCCAAAGGGAGCC...ATCCTCTGCTGCTTCACCCCCTTCCCTACACGGAAAACAAACAAAGAGTCTCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CAGAAGAAGAAAGGGGCCTATGAGCAAATGAAGGGTAGCTGTTGTGACATCAGCTCCTTGGGCTCCCTTTaGACCTGGCTCTCCTTGAGG +
Preference number: 4 (lower is better)
Translates to: QKKKGAYEQMKGSCCDISSLGSL*TWLSLR
Trigger: CCTCAAGGAGAGCCAGGTCCAAAGGGAGCCCAAGGA...GCTGATGTCACAACAGCTACCCTTCATTTGCTCATAGGCCCCTTTCTTCTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GAGACAAAGGTGAAAAGGATTGTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTAGGGCCAGTGCTTCCTaGAGGGCCTGGGAAGCCTTT +
Preference number: 4 (lower is better)
Translates to: ETKVKRIVASFLGVCLLSRASAS*RAWEAF
Trigger: AAAGGCTTCCCAGGCCCTCCAGGAAGCACTGGCCCT...ACTCAATAGGCACACACCCAAGAAACTGGCCACAATCCTTTTCACCTTTGTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp AACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCATCCACATCCTGGATGTCCAATTaGCCCAAGAAATCCAGGGTT +
Preference number: 4 (lower is better)
Translates to: NRTPLLRSGRQGTHRASTSWMSN*PKKSRV
Trigger: AACCCTGGATTTCTTGGGCCAATTGGACATCCAGGA...TGTGGATGCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CAGAGAAACCAGCACTCTGAACTACTGAACCATTTCTCCAGCCACATAGGAAATTCCAGGTACACCAGGTaGCCCTGGGCTTCCCGGAAG +
Preference number: 4 (lower is better)
Translates to: QRNQHSELLNHFSSHIGNSRYTR*PWASRK
Trigger: CTTCCGGGAAGCCCAGGGCCACCTGGTGTACCTGGA...ATTTCCTATGTGGCTGGAGAAATGGTTCAGTAGTTCAGAGTGCTGGTTTCTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR TCA 90 bp CAGAGAAACCAGCACTCTGAACTACTGAACCATTTCTCCAGCCACATAGGAAATTCTGAGGCCAGGCCTTaGCAGTCCAGGACTTCCAGG +
Preference number: 4 (lower is better)
Translates to: QRNQHSELLNHFSSHIGNSEARP*QSRTSR
Trigger: CCTGGAAGTCCTGGACTGTCAAGGCCTGGCCTCAGA...ATTTCCTATGTGGCTGGAGAAATGGTTCAGTAGTTCAGAGTGCTGGTTTCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp CAGAAGAAGAAAGGGGCCTATGAGCAAATGAAGGGTAGCTGTTGTGACATCAGCGTCACCTGGGAATCCTaGAAATCCTGGGAGACCTGC +
Preference number: 4 (lower is better)
Translates to: QKKKGAYEQMKGSCCDISVTWES*KSWETC
Trigger: GCAGGTCTCCCAGGATTTGCAGGATTCCCAGGTGAC...GCTGATGTCACAACAGCTACCCTTCATTTGCTCATAGGCCCCTTTCTTCTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACAAAAACCCTGGAAGCCTaGAACCCCTGGAGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTKTLEA*NPWRPR
Trigger: CCTGGGCCTCCAGGGGTTCCAGGCTTCCAGGGTTTT...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp TGTGATTTCAGCGATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAGTCCCGGAAAACCCTaGAAGCCTGGAACCCCTGGA +
Preference number: 4 (lower is better)
Translates to: CDFSDILWQAVAFPQGTLSPGKP*KPGTPG
Trigger: TCCAGGGGTTCCAGGCTTCCAGGGTTTTCCGGGACT...CAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATCGCTGAAATCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GAGACAAAGGTGAAAAGGATTGTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGAGACCTGCACTTCCTaGGGACCCTGGGTTTCCCTT +
Preference number: 4 (lower is better)
Translates to: ETKVKRIVASFLGVCLLSETCTS*GPWVSL
Trigger: AAGGGAAACCCAGGGTCCCCAGGAAGTGCAGGTCTC...ACTCAATAGGCACACACCCAAGAAACTGGCCACAATCCTTTTCACCTTTGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp TGTGATTTCAGCGATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGGGTCCTGGAGGTCCTTaGTCCCCTTTCCTTCCACTC +
Preference number: 4 (lower is better)
Translates to: CDFSDILWQAVAFPQGTLGPGGP*SPFLPL
Trigger: GAGTGGAAGGAAAGGGGACCAAGGACCTCCAGGACC...CAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATCGCTGAAATCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GAGACAAAGGTGAAAAGGATTGTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTTTGAGGTCCATAGCCTaGTGGTCCAGCTGGTCCTGC +
Preference number: 4 (lower is better)
Translates to: ETKVKRIVASFLGVCLLSLRSIA*WSSWSC
Trigger: GCAGGACCAGCTGGACCACCAGGCTATGGACCTCAA...ACTCAATAGGCACACACCCAAGAAACTGGCCACAATCCTTTTCACCTTTGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAAACCTACAGGTATTTCCCTTAGGTCCTaGAGGCCCTGGGCATCCAGC +
Preference number: 4 (lower is better)
Translates to: DILWQAVAFPQGTLKPTGISLRS*RPWASS
Trigger: GCTGGATGCCCAGGGCCTCCAGGACCTAAGGGAAAT...ACCTGTAGGTTTCAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CAGAAGAAGAAAGGGGCCTATGAGCAAATGAAGGGTAGCTGTTGTGACATCAGCAAAGCCTGGTTTCCCTaGTTTCCCAGGCCTGCCTAC +
Preference number: 4 (lower is better)
Translates to: QKKKGAYEQMKGSCCDISKAWFP*FPRPAY
Trigger: GTAGGCAGGCCTGGGAAACCAGGGAAACCAGGCTTT...GCTGATGTCACAACAGCTACCCTTCATTTGCTCATAGGCCCCTTTCTTCTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGGAGAACATGAGAGGATGATGTTCTCCTGGAAAGCCTaGTTTCCCTGGTTTCCCAGG +
Preference number: 4 (lower is better)
Translates to: VASFLGVCLLSGEHERMMFSWKA*FPWFPR
Trigger: CCTGGGAAACCAGGGAAACCAGGCTTTCCAGGAGAA...CATCATCCTCTCATGTTCTCCACTCAATAGGCACACACCCAAGAAACTGGCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGGAGAACATGAGAGGATGATGTGGTATGCACCTTCCTaGGGATCCTTTTGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: VASFLGVCLLSGEHERMMWYAPS*GSFCSR
Trigger: CCTGGAGCAAAAGGATCCCCAGGAAGGTGCATACCA...CATCATCCTCTCATGTTCTCCACTCAATAGGCACACACCCAAGAAACTGGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp TGTGATTTCAGCGATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGCTCACCAGGACAACCTaGTGTTCCTGGTGGTCCAGG +
Preference number: 4 (lower is better)
Translates to: CDFSDILWQAVAFPQGTLLTRTT*CSWWSR
Trigger: CCTGGACCACCAGGAACACCAGGTTGTCCTGGTGAG...CAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATCGCTGAAATCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp ACCGCCGGTCCAGTCCAGTATATGGGAAATAGTTTGGAACTGAAGAAAACAACTCTCCCCTGTCTCCTTTaGCACCTGGTACACCAGGGC +
Preference number: 4 (lower is better)
Translates to: TAGPVQYMGNSLELKKTTLPCLL*HLVHQG
Trigger: GCCCTGGTGTACCAGGTGCCAAAGGAGACAGGGGAG...AGTTGTTTTCTTCAGTTCCAAACTATTTCCCATATACTGGACTGGACCGGCGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAAACCTACAGGTGCCAGGTTTTCCACGTaGACCTGGTGGTCCTTTGGG +
Preference number: 4 (lower is better)
Translates to: DILWQAVAFPQGTLKPTGARFST*TWWSFG
Trigger: CCCAAAGGACCACCAGGTCCACGTGGAAAACCTGGC...ACCTGTAGGTTTCAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CAGAAGAAGAAAGGGGCCTATGAGCAAATGAAGGGTAGCTGTTGTGACATCAGCTGGTCCTGGAGTTCCTaGTTTCCCATCCTTGCCTGG +
Preference number: 4 (lower is better)
Translates to: QKKKGAYEQMKGSCCDISWSWSS*FPILAW
Trigger: CCAGGCAAGGATGGGAAACCAGGAACTCCAGGACCA...GCTGATGTCACAACAGCTACCCTTCATTTGCTCATAGGCCCCTTTCTTCTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR TCA 90 bp TGTGATTTCAGCGATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAGGCGCACCCTTTTCTaGTCCATAGGAGTCTCCAGG +
Preference number: 4 (lower is better)
Translates to: CDFSDILWQAVAFPQGTLRRTLF*SIGVSR
Trigger: CCTGGAGACTCCTATGGATCAGAAAAGGGTGCGCCT...CAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATCGCTGAAATCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR TCA 90 bp GATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAAACCTACAGGTCCCAGGACAACCAGGTaGTCCTTTTGTCCCTGGGAA +
Preference number: 4 (lower is better)
Translates to: DILWQAVAFPQGTLKPTGPRTTR*SFCPWE
Trigger: TTCCCAGGGACAAAAGGATCACCTGGTTGTCCTGGG...ACCTGTAGGTTTCAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACACCCTGGGTCCTGGTATaGACCTTCCTGGGGATCCTT +
Preference number: 4 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTPWVLV*TFLGIL
Trigger: AAGGATCCCCAGGAAGGTGCATACCAGGACCCAGGG...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp GATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAAACCTACAGGTATCGCTGCAGGCAGCTaGCCAGAGTACCTAGGTCTT +
Preference number: 4 (lower is better)
Translates to: DILWQAVAFPQGTLKPTGIAAGS*PEYLGL
Trigger: AAGACCTAGGTACTCTGGGCAGCTGCCTGCAGCGAT...ACCTGTAGGTTTCAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CTGAGACTCTTTGTTTGTTTTCCGTGTAGGGAAGGGGGTGAAGCAGCAGAGGATAAAAATCACTGTTCCTaGTGGCCCAGGAGGTCCTGT +
Preference number: 4 (lower is better)
Translates to: LRLFVCFPCREGGEAAEDKNHCS*WPRRSC
Trigger: ACAGGACCTCCTGGGCCACCAGGAACAGTGATTTTT...ATCCTCTGCTGCTTCACCCCCTTCCCTACACGGAAAACAAACAAAGAGTCTCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp TGTGATTTCAGCGATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGGGGTCCATCAAGTCCTaGAACTCCTGGAGGTCCTGT +
Preference number: 4 (lower is better)
Translates to: CDFSDILWQAVAFPQGTLGSIKS*NSWRSC
Trigger: ACAGGACCTCCAGGAGTTCCAGGACTTGATGGACCC...CAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATCGCTGAAATCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACATTCTCCCTTGGCTCCTaGGATGCCTGGTTCTCCAGG +
Preference number: 4 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTFSLGS*DAWFSR
Trigger: CCTGGAGAACCAGGCATCCCAGGAGCCAAGGGAGAA...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACAACAACCTGGTGTTCCTaGTGGTCCAGGATCTCCGGG +
Preference number: 4 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTTTWCS*WSRISG
Trigger: CCCGGAGATCCTGGACCACCAGGAACACCAGGTTGT...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CCTCATTTATTCTGTGTTCTAGCCCTTACACCACTCAGCAGCTCTGACCCTCCATCCTTTTTGTCCAGGTaGTCCCATCTCACCAGGACA +
Preference number: 4 (lower is better)
Translates to: PHLFCVLALTPLSSSDPPSFLSR*SHLTRT
Trigger: TGTCCTGGTGAGATGGGACCACCTGGACAAAAAGGA...TGGAGGGTCAGAGCTGCTGAGTGGTGTAAGGGCTAGAACACAGAATAAATGAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAAACCTACAGGTCTCCTCGTTCGCCTTTaGCTCCTGGGCGTCCTTTTT +
Preference number: 4 (lower is better)
Translates to: DILWQAVAFPQGTLKPTGLLVRL*LLGVLF
Trigger: AAAAAGGACGCCCAGGAGCCAAAGGCGAACGAGGAG...ACCTGTAGGTTTCAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACATCTCCCTTTAGGGCCTaGCACCCCCATGATCCCCAT +
Preference number: 4 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTSPFRA*HPHDPH
Trigger: ATGGGGATCATGGGGGTGCCAGGCCCTAAAGGGAGA...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACATCTCCTTGGGGACCATaGATCCCTGTCAGGCCTGGT +
Preference number: 4 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTSPWGP*IPVRPG
Trigger: ACCAGGCCTGACAGGGATCCATGGTCCCCAAGGAGA...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp ACCGCCGGTCCAGTCCAGTATATGGGAAATAGTTTGGAACTGAAGAAAACAACTAGGACCTGGTTTTCCTaGGTGACCAGGACTCCCAGG +
Preference number: 4 (lower is better)
Translates to: TAGPVQYMGNSLELKKTTRTWFS*VTRTPR
Trigger: CCTGGGAGTCCTGGTCACCCAGGAAAACCAGGTCCT...AGTTGTTTTCTTCAGTTCCAAACTATTTCCCATATACTGGACTGGACCGGCGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GAGACAAAGGTGAAAAGGATTGTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTACCTCTCATACCCATTaGCCCAGGAAGTCCTGGGAG +
Preference number: 4 (lower is better)
Translates to: ETKVKRIVASFLGVCLLSTSHTH*PRKSWE
Trigger: CTCCCAGGACTTCCTGGGCCAATGGGTATGAGAGGT...ACTCAATAGGCACACACCCAAGAAACTGGCCACAATCCTTTTCACCTTTGTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAAACCTACAGGTGTCTCCTTTGGCACCTaGTACACCAGGGCTCCCTTT +
Preference number: 4 (lower is better)
Translates to: DILWQAVAFPQGTLKPTGVSFGT*YTRAPF
Trigger: AAAGGGAGCCCTGGTGTACCAGGTGCCAAAGGAGAC...ACCTGTAGGTTTCAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CAGAAGAAGAAAGGGGCCTATGAGCAAATGAAGGGTAGCTGTTGTGACATCAGCAAGGCCAGACAAGCCTaGAACTCCCCTGTCTCCTTT +
Preference number: 4 (lower is better)
Translates to: QKKKGAYEQMKGSCCDISKARQA*NSPVSF
Trigger: AAAGGAGACAGGGGAGTTCCAGGCTTGTCTGGCCTT...GCTGATGTCACAACAGCTACCCTTCATTTGCTCATAGGCCCCTTTCTTCTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CAGAGAAACCAGCACTCTGAACTACTGAACCATTTCTCCAGCCACATAGGAAATTTTTCCGATAGGTCCTaGAGGTCCAGGGGGACCTGG +
Preference number: 4 (lower is better)
Translates to: QRNQHSELLNHFSSHIGNFSDRS*RSRGTW
Trigger: CCAGGTCCCCCTGGACCTCCAGGACCTATCGGAAAA...ATTTCCTATGTGGCTGGAGAAATGGTTCAGTAGTTCAGAGTGCTGGTTTCTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CAGAGAAACCAGCACTCTGAACTACTGAACCATTTCTCCAGCCACATAGGAAATTACACCAGGTGGCCCTaGGCTTCCCGGAAGAGAGAT +
Preference number: 4 (lower is better)
Translates to: QRNQHSELLNHFSSHIGNYTRWP*ASRKRD
Trigger: ATCTCTCTTCCGGGAAGCCCAGGGCCACCTGGTGTA...ATTTCCTATGTGGCTGGAGAAATGGTTCAGTAGTTCAGAGTGCTGGTTTCTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CAGAAGAAGAAAGGGGCCTATGAGCAAATGAAGGGTAGCTGTTGTGACATCAGCGCCCTTTGTACCAGCTaGTCCTGGAGTTCCTGGTTT +
Preference number: 4 (lower is better)
Translates to: QKKKGAYEQMKGSCCDISALCTS*SWSSWF
Trigger: AAACCAGGAACTCCAGGACCAGCTGGTACAAAGGGC...GCTGATGTCACAACAGCTACCCTTCATTTGCTCATAGGCCCCTTTCTTCTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR TCA 90 bp GATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAAACCTACAGGTGTCCCTGGGAAACCTTaGTTTCCCTTAGGTCCTGGA +
Preference number: 4 (lower is better)
Translates to: DILWQAVAFPQGTLKPTGVPGKP*FPLGPG
Trigger: TCCAGGACCTAAGGGAAATCAAGGTTTCCCAGGGAC...ACCTGTAGGTTTCAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACACATCTTTTCCAGGTTTaGCCCGAGGACCAGGCTCTC +
Preference number: 4 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTHLFQV*PEDQAL
Trigger: GAGAGCCTGGTCCTCGGGGCAAACCTGGAAAAGATG...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp AGACACAGATTTCTGTTTGCTAGTTACAGTTTCAAACTTTGCAGGTTTAGAATGACCGGCTTCTCCAGGTaGTCCCAGGACGCCGGGGAC +
Preference number: 4 (lower is better)
Translates to: RHRFLFASYSFKLCRFRMTGFSR*SQDAGD
Trigger: GTCCCCGGCGTCCTGGGACCACCTGGAGAAGCCGGT...CATTCTAAACCTGCAAAGTTTGAAACTGTAACTAGCAAACAGAAATCTGTGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CTGAGACTCTTTGTTTGTTTTCCGTGTAGGGAAGGGGGTGAAGCAGCAGAGGATTGTTTGAGAAGGCCCTaGTTTTCCTTTCTCTCCTCG +
Preference number: 4 (lower is better)
Translates to: LRLFVCFPCREGGEAAEDCLRRP*FSFLSS
Trigger: CGAGGAGAGAAAGGAAAACCAGGGCCTTCTCAAACA...ATCCTCTGCTGCTTCACCCCCTTCCCTACACGGAAAACAAACAAAGAGTCTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp TGTGATTTCAGCGATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGTGTACCAGCTGGTCCTaGAGTTCCTGGTTTCCCATC +
Preference number: 4 (lower is better)
Translates to: CDFSDILWQAVAFPQGTLCTSWS*SSWFPI
Trigger: GATGGGAAACCAGGAACTCCAGGACCAGCTGGTACA...CAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATCGCTGAAATCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAAACCTACAGGTTCCATCCAGACCAGGTaGGCCTTGCTGTCCTTTCAA +
Preference number: 4 (lower is better)
Translates to: DILWQAVAFPQGTLKPTGSIQTR*ALLSFQ
Trigger: TTGAAAGGACAGCAAGGCCCACCTGGTCTGGATGGA...ACCTGTAGGTTTCAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp TGCTTGTCCAGCACCCTCAGAGCCTGCACTTGTGAACATAATGAAAGAAAAACCCAGGGCATGAAGGAATaGCCGTGGTTTGACTGTGTC +
Preference number: 4 (lower is better)
Translates to: CLSSTLRACTCEHNERKTQGMKE*PWFDCV
Trigger: GACACAGTCAAACCACGGCCATTCCTTCATGCCCTG...GGTTTTTCTTTCATTATGTTCACAAGTGCAGGCTCTGAGGGTGCTGGACAAGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125563.8
3UTR CAA 72 bp AATTCTGGGTGGCTGAGGCAGAAAACTTGTGGTGATTaGGGGGTCATCCTGGGTTGTACAATGAGATGCTTC +
Preference number: 4 (lower is better)
Translates to: NSGWLRQKTCGD*GVILGCTMRCF
Trigger: GAAGCATCTCATTGTACAACCCAGGATGACCCCCAAATCACCACAAGTTTTCTGCCTCAGCCACCCAGAATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp TGTGATTTCAGCGATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGCCTTTAAGTCCTGGATaGCCTTGGTCACCTGGGAAT +
Preference number: 4 (lower is better)
Translates to: CDFSDILWQAVAFPQGTLPLSPG*PWSPGN
Trigger: ATTCCCAGGTGACCAAGGGCATCCAGGACTTAAAGG...CAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATCGCTGAAATCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp ACCGCCGGTCCAGTCCAGTATATGGGAAATAGTTTGGAACTGAAGAAAACAACTCTGGTTTCCCATCCTTaGCTGGTTTACCTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: TAGPVQYMGNSLELKKTTLVSHP*LVYLLA
Trigger: GGCCAAGAGGTAAACCAGGCAAGGATGGGAAACCAG...AGTTGTTTTCTTCAGTTCCAAACTATTTCCCATATACTGGACTGGACCGGCGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CCTCATTTATTCTGTGTTCTAGCCCTTACACCACTCAGCAGCTCTGACCCTCCAGTCATAATATTCTGTTaGACCAGGAAATCCTGGGGG +
Preference number: 4 (lower is better)
Translates to: PHLFCVLALTPLSSSDPPVIIFC*TRKSWG
Trigger: CCCCCAGGATTTCCTGGTCCAACAGAATATTATGAC...TGGAGGGTCAGAGCTGCTGAGTGGTGTAAGGGCTAGAACACAGAATAAATGAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CAGAAGAAGAAAGGGGCCTATGAGCAAATGAAGGGTAGCTGTTGTGACATCAGCAAAAACAATGTCACCTaGACATCCTGGAGGTCCTGG +
Preference number: 4 (lower is better)
Translates to: QKKKGAYEQMKGSCCDISKNNVT*TSWRSW
Trigger: CCAGGACCTCCAGGATGTCCAGGTGACATTGTTTTT...GCTGATGTCACAACAGCTACCCTTCATTTGCTCATAGGCCCCTTTCTTCTTCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CAGAGAAACCAGCACTCTGAACTACTGAACCATTTCTCCAGCCACATAGGAAATGTGACACTCGGTGCATaGACTGCCTGGTTCTCCTTT +
Preference number: 4 (lower is better)
Translates to: QRNQHSELLNHFSSHIGNVTLGA*TAWFSF
Trigger: AAAGGAGAACCAGGCAGTCCATGCACCGAGTGTCAC...ATTTCCTATGTGGCTGGAGAAATGGTTCAGTAGTTCAGAGTGCTGGTTTCTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CAGAGAAACCAGCACTCTGAACTACTGAACCATTTCTCCAGCCACATAGGAAATCATGCCGTGTGGTCCTaGTCTTCCAGGATTTCCTCT +
Preference number: 4 (lower is better)
Translates to: QRNQHSELLNHFSSHIGNHAVWS*SSRISS
Trigger: AGAGGAAATCCTGGAAGACCAGGACCACACGGCATG...ATTTCCTATGTGGCTGGAGAAATGGTTCAGTAGTTCAGAGTGCTGGTTTCTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GAGACAAAGGTGAAAAGGATTGTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTCTTTCCTTTGTCACCTaGCAATCCTGGATCGCCCTT +
Preference number: 4 (lower is better)
Translates to: ETKVKRIVASFLGVCLLSLSFVT*QSWIAL
Trigger: AAGGGCGATCCAGGATTGCCAGGTGACAAAGGAAAG...ACTCAATAGGCACACACCCAAGAAACTGGCCACAATCCTTTTCACCTTTGTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp AGACACAGATTTCTGTTTGCTAGTTACAGTTTCAAACTTTGCAGGTTTAGAATGGCTCCCTTTTGGGCCTaGGTAGGCCCCCAGCAAGCC +
Preference number: 4 (lower is better)
Translates to: RHRFLFASYSFKLCRFRMAPFWA*VGPQQA
Trigger: GGCTTGCTGGGGGCCTACCCAGGCCCAAAAGGGAGC...CATTCTAAACCTGCAAAGTTTGAAACTGTAACTAGCAAACAGAAATCTGTGTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR TCA 90 bp GATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAAACCTACAGGTGGTCACCTTTTCCATTaGATCCCCTGTCTTCTCCTT +
Preference number: 4 (lower is better)
Translates to: DILWQAVAFPQGTLKPTGGHLFH*IPCLLL
Trigger: AAGGAGAAGACAGGGGATTCAATGGAAAAGGTGACC...ACCTGTAGGTTTCAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR TCA 90 bp TGTGATTTCAGCGATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGCCTGACAGCGGCTTATaGTTTTCTCTAAGTCTCCAG +
Preference number: 4 (lower is better)
Translates to: CDFSDILWQAVAFPQGTLPDSGL*FSLSLQ
Trigger: CTGGAGACTTAGAGAAAATCATAAGCCGCTGTCAGG...CAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATCGCTGAAATCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CAGAAGAAGAAAGGGGCCTATGAGCAAATGAAGGGTAGCTGTTGTGACATCAGCATTCCATCACGTCCTTaGTCACCTCTCATACCCATT +
Preference number: 4 (lower is better)
Translates to: QKKKGAYEQMKGSCCDISIPSRP*SPLIPI
Trigger: AATGGGTATGAGAGGTGACCAAGGACGTGATGGAAT...GCTGATGTCACAACAGCTACCCTTCATTTGCTCATAGGCCCCTTTCTTCTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp TGCTTGTCCAGCACCCTCAGAGCCTGCACTTGTGAACATAATGAAAGAAAAACCAAACCCACTATAGAGTaGCTGTGTTCCTTCAGGGCA +
Preference number: 4 (lower is better)
Translates to: CLSSTLRACTCEHNERKTKPTIE*LCSFRA
Trigger: TGCCCTGAAGGAACACAGCCACTCTATAGTGGGTTT...GGTTTTTCTTTCATTATGTTCACAAGTGCAGGCTCTGAGGGTGCTGGACAAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125563.8
CDS-3UTR CCA 90 bp GATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAAACCTACAGGTTCTGAACATTCTTTCTaGGTTCAGCGAAGCCAGCCA +
Preference number: 4 (lower is better)
Translates to: DILWQAVAFPQGTLKPTGSEHSF*VQRSQP
Trigger: TGGCTGGCTTCGCTGAACCCAGAAAGAATGTTCAGA...ACCTGTAGGTTTCAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR CAA 72 bp ATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTaGAAACCTACAGGTTTAGAGACCCACATCACAGAC +
Preference number: 4 (lower is better)
Translates to: ILWQAVAFPQGT*KPTGLETHITD
Trigger: GTCTGTGATGTGGGTCTCTAAACCTGTAGGTTTCAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR TCA 90 bp TGGTCTCTTTCCACATGGTTGCGAAGAATCTATAACATAAAAATCATGGCGTACCCCCTGTCTTCTCCTTaGGCAGGCTCACCCTTTTGT +
Preference number: 4 (lower is better)
Translates to: WSLSTWLRRIYNIKIMAYPLSSP*AGSPFC
Trigger: ACAAAAGGGTGAGCCTGCTCAAGGAGAAGACAGGGG...GTACGCCATGATTTTTATGTTATAGATTCTTCGCAACCATGTGGAAAGAGACCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR TCA 90 bp TGTGATTTCAGCGATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGCTCCTGGGATTCCTTTaGTACCATCTAATCCTGGAA +
Preference number: 4 (lower is better)
Translates to: CDFSDILWQAVAFPQGTLLLGFL*YHLILE
Trigger: TTCCAGGATTAGATGGTATCAAAGGAATCCCAGGAG...CAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATCGCTGAAATCACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR TCA 90 bp AGACACAGATTTCTGTTTGCTAGTTACAGTTTCAAACTTTGCAGGTTTAGAATGCCTGGTTTTCCTGGGTaGCCAGGACTCCCAGGACTC +
Preference number: 4 (lower is better)
Translates to: RHRFLFASYSFKLCRFRMPGFPG*PGLPGL
Trigger: GAGTCCTGGGAGTCCTGGTCACCCAGGAAAACCAGG...CATTCTAAACCTGCAAAGTTTGAAACTGTAACTAGCAAACAGAAATCTGTGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp AGACACAGATTTCTGTTTGCTAGTTACAGTTTCAAACTTTGCAGGTTTAGAATGCAAGCCATCAGGACCTaGGAGCCCTGCATAGCCTGG +
Preference number: 4 (lower is better)
Translates to: RHRFLFASYSFKLCRFRMQAIRT*EPCIAW
Trigger: CCAGGCTATGCAGGGCTCCCAGGTCCTGATGGCTTG...CATTCTAAACCTGCAAAGTTTGAAACTGTAACTAGCAAACAGAAATCTGTGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp GATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAAACCTACAGGTATCACCTCTTCGACCTaGTTGCCCTTTCAATCCATT +
Preference number: 4 (lower is better)
Translates to: DILWQAVAFPQGTLKPTGITSST*LPFQSI
Trigger: AATGGATTGAAAGGGCAACCAGGTCGAAGAGGTGAT...ACCTGTAGGTTTCAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp AGACACAGATTTCTGTTTGCTAGTTACAGTTTCAAACTTTGCAGGTTTAGAATGTCCCGGGAAACCTGGTaGGCCCATGTCCCCTACAGT +
Preference number: 4 (lower is better)
Translates to: RHRFLFASYSFKLCRFRMSRETW*AHVPYS
Trigger: ACTGTAGGGGACATGGGCCCACCAGGTTTCCCGGGA...CATTCTAAACCTGCAAAGTTTGAAACTGTAACTAGCAAACAGAAATCTGTGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CAGAGAAACCAGCACTCTGAACTACTGAACCATTTCTCCAGCCACATAGGAAATAAACCCACTATAGAGTaGCTGTGTTCCTTCAGGGCA +
Preference number: 4 (lower is better)
Translates to: QRNQHSELLNHFSSHIGNKPTIE*LCSFRA
Trigger: TGCCCTGAAGGAACACAGCCACTCTATAGTGGGTTT...ATTTCCTATGTGGCTGGAGAAATGGTTCAGTAGTTCAGAGTGCTGGTTTCTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp TGGTCTCTTTCCACATGGTTGCGAAGAATCTATAACATAAAAATCATGGCGTACAGAGAAACCCAGTCCTaGGGACACGGAGGGATAGCA +
Preference number: 4 (lower is better)
Translates to: WSLSTWLRRIYNIKIMAYRETQS*GHGGIA
Trigger: TGCTATCCCTCCGTGTCCCCAGGACTGGGTTTCTCT...GTACGCCATGATTTTTATGTTATAGATTCTTCGCAACCATGTGGAAAGAGACCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CCTCATTTATTCTGTGTTCTAGCCCTTACACCACTCAGCAGCTCTGACCCTCCAATGGCATTCTATAAATaGACTGGCTCGGAATTCTTC +
Preference number: 4 (lower is better)
Translates to: PHLFCVLALTPLSSSDPPMAFYK*TGSEFF
Trigger: GAAGAATTCCGAGCCAGTCCATTTATAGAATGCCAT...TGGAGGGTCAGAGCTGCTGAGTGGTGTAAGGGCTAGAACACAGAATAAATGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR TCA 90 bp TTCTCTAAGTCTCCAGCTTTCACAGTTGATGGAATAGGTTTTCTGAACATTCTTGGAATGGCCGTGGTTTaGCTGTGTCGGGTGAAGATG +
Preference number: 4 (lower is better)
Translates to: FSKSPAFTVDGIGFLNILGMAVV*LCRVKM
Trigger: CATCTTCACCCGACACAGTCAAACCACGGCCATTCC...AAGAATGTTCAGAAAACCTATTCCATCAACTGTGAAAGCTGGAGACTTAGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125563.8
CDS-3UTR TCA 90 bp CAGAAGAAGAAAGGGGCCTATGAGCAAATGAAGGGTAGCTGTTGTGACATCAGCTCCAGCTTTCACAGTTaGTGGAATAGGTTTTCTGAA +
Preference number: 4 (lower is better)
Translates to: QKKKGAYEQMKGSCCDISSSFHS*WNRFSE
Trigger: TTCAGAAAACCTATTCCATCAACTGTGAAAGCTGGA...GCTGATGTCACAACAGCTACCCTTCATTTGCTCATAGGCCCCTTTCTTCTTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp TGTGATTTCAGCGATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAATGTCTTTTCTTCATaGACACCTGACAGCGGCTTA +
Preference number: 4 (lower is better)
Translates to: CDFSDILWQAVAFPQGTLNVFSS*TPDSGL
Trigger: TAAGCCGCTGTCAGGTGTGCATGAAGAAAAGACATT...CAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATCGCTGAAATCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CCTCATTTATTCTGTGTTCTAGCCCTTACACCACTCAGCAGCTCTGACCCTCCAGATTTGTTGTATGGCTaGGTGAGTGTAAAAATCACT +
Preference number: 4 (lower is better)
Translates to: PHLFCVLALTPLSSSDPPDLLYG*VSVKIT
Trigger: AGTGATTTTTACACTCACCCAGCCATACAACAAATC...TGGAGGGTCAGAGCTGCTGAGTGGTGTAAGGGCTAGAACACAGAATAAATGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CAGAAGAAGAAAGGGGCCTATGAGCAAATGAAGGGTAGCTGTTGTGACATCAGCGTCCGATTTGTTGTATaGCTGGGTGAGTGTAAAAAT +
Preference number: 4 (lower is better)
Translates to: QKKKGAYEQMKGSCCDISVRFVV*LGECKN
Trigger: ATTTTTACACTCACCCAGCCATACAACAAATCGGAC...GCTGATGTCACAACAGCTACCCTTCATTTGCTCATAGGCCCCTTTCTTCTTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp TGGTCTCTTTCCACATGGTTGCGAAGAATCTATAACATAAAAATCATGGCGTACTGGTCCTGGGAATCCTaGAGCTCCCGGATATCCTTT +
Preference number: 4 (lower is better)
Translates to: WSLSTWLRRIYNIKIMAYWSWES*SSRISF
Trigger: AAAGGATATCCGGGAGCTCCAGGATTCCCAGGACCA...GTACGCCATGATTTTTATGTTATAGATTCTTCGCAACCATGTGGAAAGAGACCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp AGACACAGATTTCTGTTTGCTAGTTACAGTTTCAAACTTTGCAGGTTTAGAATGATCGCCCTTTGGTCCTaGTGGTCCTGGTCTTGCACC +
Preference number: 4 (lower is better)
Translates to: RHRFLFASYSFKLCRFRMIALWS*WSWSCT
Trigger: GGTGCAAGACCAGGACCACCAGGACCAAAGGGCGAT...CATTCTAAACCTGCAAAGTTTGAAACTGTAACTAGCAAACAGAAATCTGTGTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp AGACACAGATTTCTGTTTGCTAGTTACAGTTTCAAACTTTGCAGGTTTAGAATGAGGTCCAGGGGGACCTaGCTCACCTGGATTTCCTCT +
Preference number: 4 (lower is better)
Translates to: RHRFLFASYSFKLCRFRMRSRGT*LTWISS
Trigger: AGAGGAAATCCAGGTGAGCCAGGTCCCCCTGGACCT...CATTCTAAACCTGCAAAGTTTGAAACTGTAACTAGCAAACAGAAATCTGTGTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp CAGAGAAACCAGCACTCTGAACTACTGAACCATTTCTCCAGCCACATAGGAAATTTCTCCTTTTATGCCTaGAAATCCAGGGAATCCTGG +
Preference number: 4 (lower is better)
Translates to: QRNQHSELLNHFSSHIGNFSFYA*KSRESW
Trigger: CCAGGATTCCCTGGATTTCCAGGCATAAAAGGAGAA...ATTTCCTATGTGGCTGGAGAAATGGTTCAGTAGTTCAGAGTGCTGGTTTCTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp CAGAGAAACCAGCACTCTGAACTACTGAACCATTTCTCCAGCCACATAGGAAATCCTTTTCTCCTTTTATaGCTGGAAATCCAGGGAATC +
Preference number: 4 (lower is better)
Translates to: QRNQHSELLNHFSSHIGNPFLLL*LEIQGI
Trigger: GATTCCCTGGATTTCCAGGCATAAAAGGAGAAAAGG...ATTTCCTATGTGGCTGGAGAAATGGTTCAGTAGTTCAGAGTGCTGGTTTCTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR CAA 72 bp AAAAGGATTGTGGCCAGTTTCTTGGGTGTGTGCCTATaGAGTGGAGAACATGAGAGGATGATGAAAACTTTG +
Preference number: 4 (lower is better)
Translates to: KRIVASFLGVCL*SGEHERMMKTL
Trigger: CAAAGTTTTCATCATCCTCTCATGTTCTCCACTCAATAGGCACACACCCAAGAAACTGGCCACAATCCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR GCA 90 bp ACCGCCGGTCCAGTCCAGTATATGGGAAATAGTTTGGAACTGAAGAAAACAACTTCCCTTTTCCAGGTATaGGTCATAATATTCTGTTGG +
Preference number: 4 (lower is better)
Translates to: TAGPVQYMGNSLELKKTTSLFQV*VIIFCW
Trigger: CCAACAGAATATTATGACGCATACCTGGAAAAGGGA...AGTTGTTTTCTTCAGTTCCAAACTATTTCCCATATACTGGACTGGACCGGCGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR CAA 72 bp TGTGCTCTTGGGTCACATTTTCCAAATACAAAGCAGTaGAGTTTACAGCACCAGCCTGAACTTAAGTATCAG +
Preference number: 4 (lower is better)
Translates to: CALGSHFPNTKQ*SLQHQPELKYQ
Trigger: CTGATACTTAAGTTCAGGCTGGTGCTGTAAACTCAACTGCTTTGTATTTGGAAAATGTGACCCAAGAGCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CCA 90 bp AGACACAGATTTCTGTTTGCTAGTTACAGTTTCAAACTTTGCAGGTTTAGAATGTGCCTGGTTCTCCTTTaGGTCCATCAAGTCCTGGAA +
Preference number: 4 (lower is better)
Translates to: RHRFLFASYSFKLCRFRMCLVLL*VHQVLE
Trigger: TTCCAGGACTTGATGGACCCAAAGGAGAACCAGGCA...CATTCTAAACCTGCAAAGTTTGAAACTGTAACTAGCAAACAGAAATCTGTGTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR TCA 90 bp TGGTCTCTTTCCACATGGTTGCGAAGAATCTATAACATAAAAATCATGGCGTACGAAACTGTAGGAGTTTaGGTAGTAGTTACATGTCCC +
Preference number: 4 (lower is better)
Translates to: WSLSTWLRRIYNIKIMAYETVGV*VVVTCP
Trigger: GGGACATGTAACTACTACTCAAACTCCTACAGTTTC...GTACGCCATGATTTTTATGTTATAGATTCTTCGCAACCATGTGGAAAGAGACCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR CAA 72 bp TACACTCAAAGGTTTGCCTCACAATGCCTGGCCTCTTaGAGTCTTCAAATAGTACGACACTATCTGATTATT +
Preference number: 4 (lower is better)
Translates to: YTQRFASQCLAS*SLQIVRHYLII
Trigger: AATAATCAGATAGTGTCGTACTATTTGAAGACTCAAAGAGGCCAGGCATTGTGAGGCAAACCTTTGAGTGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
3UTR CAA 72 bp AGATGCTTCTCATCAAGACAAGACACAGATTTCTGTTaGCTAGTTACAGTTTCAAACTTTGCAGGTTTAGAA +
Preference number: 4 (lower is better)
Translates to: RCFSSRQDTDFC*LVTVSNFAGLE
Trigger: TTCTAAACCTGCAAAGTTTGAAACTGTAACTAGCAAACAGAAATCTGTGTCTTGTCTTGATGAGAAGCATCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp GATCCGTTGCATCCTGGTAAACCAGCCAGCCCACGAGGCCCAGGGTaGCCTGGGAGGCCTGGAAGTCCAGGAGGACCTGCAAACCCTGGT +
Preference number: 5 (lower is better)
Translates to: DPLHPGKPASPRGPG*PGRPGSPGGPANPG
Trigger: ACCAGGGTTTGCAGGTCCTCCTGGACTTCCAGGCCTCCCAGGCCACCCTGGGCCTCGTGGGCTGGCTGGTTTACCAGGATGCAACGGATC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS TCA 90 bp GGAGGTCCTTGGTCCCCTTTCCTTCCACTCAGGGCCGGTTCGCCCTaGGGTCCTGGTGGTCCTTTCGCTCCTGGACCTCCAGGAGTTCCA +
Preference number: 5 (lower is better)
Translates to: GGPWSPFLPLRAGSP*GPGGPFAPGPPGVP
Trigger: TGGAACTCCTGGAGGTCCAGGAGCGAAAGGACCACCAGGACCTCAGGGCGAACCGGCCCTGAGTGGAAGGAAAGGGGACCAAGGACCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp TTGGTCCCCTTTCCTTCCACTCAGGGCCGGTTCGCCCTGAGGTCCTaGTGGTCCTTTCGCTCCTGGACCTCCAGGAGTTCCATCGAAGCC +
Preference number: 5 (lower is better)
Translates to: LVPFPSTQGRFALRS*WSFRSWTSRSSIEA
Trigger: GGCTTCGATGGAACTCCTGGAGGTCCAGGAGCGAAAGGACCACCAGGACCTCAGGGCGAACCGGCCCTGAGTGGAAGGAAAGGGGACCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp GCTGCCCCTGTGAGCCTGGTTTCCCAGGAAGCCCCGGAGGGCCAGTaGTTCCAGGATAGCCCATCATTCCAACCTCTCCTTTCTCGCCTG +
Preference number: 5 (lower is better)
Translates to: AAPVSLVSQEAPEGQ*FQDSPSFQPLLSRL
Trigger: CAGGCGAGAAAGGAGAGGTTGGAATGATGGGCTATCCTGGAACCACTGGCCCTCCGGGGCTTCCTGGGAAACCAGGCTCACAGGGGCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS TCA 90 bp GACCTCCAGGAGTTCCATCGAAGCCCTTTCTCCCGGGCAGGCCTCTaGGTCCAGGATCACCTGGATTACCCACTTGCCCCCAGGGTAGAG +
Preference number: 5 (lower is better)
Translates to: DLQEFHRSPFSRAGL*VQDHLDYPLAPRVE
Trigger: CTCTACCCTGGGGGCAAGTGGGTAATCCAGGTGATCCTGGACTCAGAGGCCTGCCCGGGAGAAAGGGCTTCGATGGAACTCCTGGAGGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp TCCTGGGACTCCAGGGGGCCCTGGGAAGCAGTGACACTCGGTGCATaGACTGCCTGGTTCTCCTTTGGGTCCATCAAGTCCTGGAACTCC +
Preference number: 5 (lower is better)
Translates to: SWDSRGPWEAVTLGA*TAWFSFGSIKSWNS
Trigger: GGAGTTCCAGGACTTGATGGACCCAAAGGAGAACCAGGCAGTCCATGCACCGAGTGTCACTGCTTCCCAGGGCCCCCTGGAGTCCCAGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp AACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCATCCACAGACGCCGGGGACTCCTaGGGCTCCCTTTGGACCTGG +
Preference number: 5 (lower is better)
Translates to: NRTPLLRSGRQGTHRASTDAGDS*GSLWTW
Trigger: CCAGGTCCAAAGGGAGCCCAAGGAGTCCCCGGCGTC...TGTGGATGCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS GCA 90 bp TGGATGCCCTTGGTCACCTGGGAATCCTGCAAATCCTGGGAGACCTaGACTTCCTGGGGACCCTGGGTTTCCCTTCAGACCAGGCACACC +
Preference number: 5 (lower is better)
Translates to: WMPLVTWESCKSWET*TSWGPWVSLQTRHT
Trigger: GGTGTGCCTGGTCTGAAGGGAAACCCAGGGTCCCCAGGAAGTGCAGGTCTCCCAGGATTTGCAGGATTCCCAGGTGACCAAGGGCATCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp TCCTTGAGCAGGCTCACCCTTTTGTCCTTTCAAGCCATCAGGACCTaGGAGCCCTGCATAGCCTGGTGTGCCGGGAAAGCCCGGGAATCC +
Preference number: 5 (lower is better)
Translates to: SLSRLTLLSFQAIRT*EPCIAWCAGKARES
Trigger: GGATTCCCGGGCTTTCCCGGCACACCAGGCTATGCAGGGCTCCCAGGTCCTGATGGCTTGAAAGGACAAAAGGGTGAGCCTGCTCAAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp TGGCACCCCCATGATCCCCATGCTTCCTGGCATGCCGTGTGGTCCTaGTCTTCCAGGATTTCCTCTGCTTCCCGTATCTCCTCTAGGGCC +
Preference number: 5 (lower is better)
Translates to: WHPHDPHASWHAVWS*SSRISSASRISSRA
Trigger: GGCCCTAGAGGAGATACGGGAAGCAGAGGAAATCCTGGAAGACCAGGACCACACGGCATGCCAGGAAGCATGGGGATCATGGGGGTGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp AGGGCCTGGCACCCCCATGATCCCCATGCTTCCTGGCATGCCGTGTaGTCCTGGTCTTCCAGGATTTCCTCTGCTTCCCGTATCTCCTCT +
Preference number: 5 (lower is better)
Translates to: RAWHPHDPHASWHAV*SWSSRISSASRISS
Trigger: AGAGGAGATACGGGAAGCAGAGGAAATCCTGGAAGACCAGGACCACACGGCATGCCAGGAAGCATGGGGATCATGGGGGTGCCAGGCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp AGGACCAGGAATTCCATCACGTCCTTGGTCACCTCTCATACCCATTaGCCCAGGAAGTCCTGGGAGTCCTGGAGGGCCTGGAGGGCCAGT +
Preference number: 5 (lower is better)
Translates to: RTRNSITSLVTSHTH*PRKSWESWRAWRAS
Trigger: ACTGGCCCTCCAGGCCCTCCAGGACTCCCAGGACTTCCTGGGCCAATGGGTATGAGAGGTGACCAAGGACGTGATGGAATTCCTGGTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS GCA 90 bp GAAATCCTGGGACTCCAGGGGGCCCTGGGAAGCAGTGACACTCGGTaGATGGACTGCCTGGTTCTCCTTTGGGTCCATCAAGTCCTGGAA +
Preference number: 5 (lower is better)
Translates to: EILGLQGALGSSDTR*MDCLVLLWVHQVLE
Trigger: TTCCAGGACTTGATGGACCCAAAGGAGAACCAGGCAGTCCATGCACCGAGTGTCACTGCTTCCCAGGGCCCCCTGGAGTCCCAGGATTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS GCA 90 bp TGCCTCTTTCTCCTGGAAAGCCTGGTTTCCCTGGTTTCCCAGGCCTaGCTACGGATGGTTCTCCCTTGGCTCCTGGGATGCCTGGTTCTC +
Preference number: 5 (lower is better)
Translates to: CLFLLESLVSLVSQA*LRMVLPWLLGCLVL
Trigger: GAGAACCAGGCATCCCAGGAGCCAAGGGAGAACCATCCGTAGGCAGGCCTGGGAAACCAGGGAAACCAGGCTTTCCAGGAGAAAGAGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp TGGAAGGAACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCTGCCAGGGTCTCCCTTaGGCCCGGTATCACCTCTTC +
Preference number: 5 (lower is better)
Translates to: WKEPHSFAQEWETRNTPCCQGLP*ARYHLF
Trigger: GAAGAGGTGATACCGGGCCAAAGGGAGACCCTGGCA...GCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTTCCTTCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS GCA 90 bp GACCTGGTTGCCCTTTCAATCCATTCAAGCCGGGAAGTCCTTGGGTaGCCCTGGGTCCTGGTATGCACCTTCCTGGGGATCCTTTTGCTC +
Preference number: 5 (lower is better)
Translates to: DLVALSIHSSREVLG*PWVLVCTFLGILLL
Trigger: GAGCAAAAGGATCCCCAGGAAGGTGCATACCAGGACCCAGGGGCACCCAAGGACTTCCCGGCTTGAATGGATTGAAAGGGCAACCAGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS GCA 90 bp TGCCCTTTGTACCAGCTGGTCCTGGAGTTCCTGGTTTCCCATCCTTaGCTGGTTTACCTCTTGGCCCACAGGGTCCTGGGATTCCTGGCA +
Preference number: 5 (lower is better)
Translates to: CPLYQLVLEFLVSHP*LVYLLAHRVLGFLA
Trigger: TGCCAGGAATCCCAGGACCCTGTGGGCCAAGAGGTAAACCAGGCAAGGATGGGAAACCAGGAACTCCAGGACCAGCTGGTACAAAGGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp CTGGGAAGCAGTGACACTCGGTGCATGGACTGCCTGGTTCTCCTTTaGGTCCATCAAGTCCTGGAACTCCTGGAGGTCCTGTGTCACCTG +
Preference number: 5 (lower is better)
Translates to: LGSSDTRCMDCLVLL*VHQVLELLEVLCHL
Trigger: CAGGTGACACAGGACCTCCAGGAGTTCCAGGACTTGATGGACCCAAAGGAGAACCAGGCAGTCCATGCACCGAGTGTCACTGCTTCCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp CTTTGTACCAGCTGGTCCTGGAGTTCCTGGTTTCCCATCCTTGCCTaGTTTACCTCTTGGCCCACAGGGTCCTGGGATTCCTGGCAGTCC +
Preference number: 5 (lower is better)
Translates to: LCTSWSWSSWFPILA*FTSWPTGSWDSWQS
Trigger: GGACTGCCAGGAATCCCAGGACCCTGTGGGCCAAGAGGTAAACCAGGCAAGGATGGGAAACCAGGAACTCCAGGACCAGCTGGTACAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp GAGACAAAGGTGAAAAGGATTGTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGGGCCACGGGCTCCTTaGGGCCCAGGAAGGCCTGGC +
Preference number: 5 (lower is better)
Translates to: ETKVKRIVASFLGVCLLSGPRAP*GPGRPG
Trigger: GCCAGGCCTTCCTGGGCCCAAAGGAGCCCGTGGCCC...ACTCAATAGGCACACACCCAAGAAACTGGCCACAATCCTTTTCACCTTTGTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp CCTCATTTATTCTGTGTTCTAGCCCTTACACCACTCAGCAGCTCTGACCCTCCATCCGGCAGGCCCCGATaGTCCAGGTGGCCCAGGTAC +
Preference number: 5 (lower is better)
Translates to: PHLFCVLALTPLSSSDPPSGRPR*SRWPRY
Trigger: GTACCTGGGCCACCTGGACAATCGGGGCCTGCCGGA...TGGAGGGTCAGAGCTGCTGAGTGGTGTAAGGGCTAGAACACAGAATAAATGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp AACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCATCCACATGCCTGGTTTACCTCTaGGCCCACAGGGTCCTGGGA +
Preference number: 5 (lower is better)
Translates to: NRTPLLRSGRQGTHRASTCLVYL*AHRVLG
Trigger: TCCCAGGACCCTGTGGGCCAAGAGGTAAACCAGGCA...TGTGGATGCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp TGGACTGCCTGGTTCTCCTTTGGGTCCATCAAGTCCTGGAACTCCTaGAGGTCCTGTGTCACCTGGCATTCCATGCTCACCAGGGGAACA +
Preference number: 5 (lower is better)
Translates to: WTAWFSFGSIKSWNS*RSCVTWHSMLTRGT
Trigger: TGTTCCCCTGGTGAGCATGGAATGCCAGGTGACACAGGACCTCCAGGAGTTCCAGGACTTGATGGACCCAAAGGAGAACCAGGCAGTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp ATTTTCCCCAGCATTGCCTCTTTCTCCTGGAAAGCCTGGTTTCCCTaGTTTCCCAGGCCTGCCTACGGATGGTTCTCCCTTGGCTCCTGG +
Preference number: 5 (lower is better)
Translates to: IFPSIASFSWKAWFP*FPRPAYGWFSLGSW
Trigger: CCAGGAGCCAAGGGAGAACCATCCGTAGGCAGGCCTGGGAAACCAGGGAAACCAGGCTTTCCAGGAGAAAGAGGCAATGCTGGGGAAAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp CTTCGACCTGGTTGCCCTTTCAATCCATTCAAGCCGGGAAGTCCTTaGGTGCCCCTGGGTCCTGGTATGCACCTTCCTGGGGATCCTTTT +
Preference number: 5 (lower is better)
Translates to: LRPGCPFNPFKPGSP*VPLGPGMHLPGDPF
Trigger: AAAAGGATCCCCAGGAAGGTGCATACCAGGACCCAGGGGCACCCAAGGACTTCCCGGCTTGAATGGATTGAAAGGGCAACCAGGTCGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp TGGGCCTGGGTAGGCCCCCAGCAAGCCTGTTTCTCCTTTTTCTCCTaGAGGACCAGGAATTCCATCACGTCCTTGGTCACCTCTCATACC +
Preference number: 5 (lower is better)
Translates to: WAWVGPQQACFSFFS*RTRNSITSLVTSHT
Trigger: GGTATGAGAGGTGACCAAGGACGTGATGGAATTCCTGGTCCTCCAGGAGAAAAAGGAGAAACAGGCTTGCTGGGGGCCTACCCAGGCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp CGGAAGAGAGATGACCTTAAGAGTGCCAGGTTTTCCACGTGGACCTaGTGGTCCTTTGGGCCCAACTGGTCCTGGATGTCCAATTGGCCC +
Preference number: 5 (lower is better)
Translates to: RKRDDLKSARFSTWT*WSFGPNWSWMSNWP
Trigger: GGGCCAATTGGACATCCAGGACCAGTTGGGCCCAAAGGACCACCAGGTCCACGTGGAAAACCTGGCACTCTTAAGGTCATCTCTCTTCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp AGGGTCTCCTTTCATTCCTGGCTGTCCAGGTACACCAGGTGGCCCTaGGCTTCCCGGAAGAGAGATGACCTTAAGAGTGCCAGGTTTTCC +
Preference number: 5 (lower is better)
Translates to: RVSFHSWLSRYTRWP*ASRKRDDLKSARFS
Trigger: GGAAAACCTGGCACTCTTAAGGTCATCTCTCTTCCGGGAAGCCCAGGGCCACCTGGTGTACCTGGACAGCCAGGAATGAAAGGAGACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp TGGAAGGAACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCCAGAGGCATTGTCCTTaGCCTTTGCAGACACAGCCC +
Preference number: 5 (lower is better)
Translates to: WKEPHSFAQEWETRNTPCQRHCP*PLQTQP
Trigger: GGGCTGTGTCTGCAAAGGCAAAGGACAATGCCTCTG...GCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTTCCTTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp AACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCATCCACAAAGTCCTGGATGCCCTaGGTCACCTGGGAATCCTGC +
Preference number: 5 (lower is better)
Translates to: NRTPLLRSGRQGTHRASTKSWMP*VTWESC
Trigger: GCAGGATTCCCAGGTGACCAAGGGCATCCAGGACTT...TGTGGATGCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp GGTTCCAGGATAGCCCATCATTCCAACCTCTCCTTTCTCGCCTGGTaGTCCTGGGAATCCTGGAGCTCCCGGATATCCTTTTTGTCCAGG +
Preference number: 5 (lower is better)
Translates to: GSRIAHHSNLSFLAW*SWESWSSRISFLSR
Trigger: CCTGGACAAAAAGGATATCCGGGAGCTCCAGGATTCCCAGGACCACCAGGCGAGAAAGGAGAGGTTGGAATGATGGGCTATCCTGGAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp TTTCAAGCCCTTGTTGCCCTTTGTACCAGCTGGTCCTGGAGTTCCTaGTTTCCCATCCTTGCCTGGTTTACCTCTTGGCCCACAGGGTCC +
Preference number: 5 (lower is better)
Translates to: FQALVALCTSWSWSS*FPILAWFTSWPTGS
Trigger: GGACCCTGTGGGCCAAGAGGTAAACCAGGCAAGGATGGGAAACCAGGAACTCCAGGACCAGCTGGTACAAAGGGCAACAAGGGCTTGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp AACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCATCCACACCTGGTTTCCCATCCTaGCCTGGTTTACCTCTTGGC +
Preference number: 5 (lower is better)
Translates to: NRTPLLRSGRQGTHRASTPGFPS*PGLPLG
Trigger: GCCAAGAGGTAAACCAGGCAAGGATGGGAAACCAGG...TGTGGATGCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS TCA 90 bp TTCTCCAGGACGGCCAGGCTTTCCCATTTCCCCAGGACAACCAGGTaGTCCTTTTGTCCCTGGGAAACCTTGATTTCCCTTAGGTCCTGG +
Preference number: 5 (lower is better)
Translates to: FSRTARLSHFPRTTR*SFCPWETLISLRSW
Trigger: CCAGGACCTAAGGGAAATCAAGGTTTCCCAGGGACAAAAGGATCACCTGGTTGTCCTGGGGAAATGGGAAAGCCTGGCCGTCCTGGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS GCA 90 bp GGATTTCCCTTTAAGCCTGGCAATCCATCCAGACCAGGTGGGCCTTaGTGTCCTTTCAAGCCCTTGTTGCCCTTTGTACCAGCTGGTCCT +
Preference number: 5 (lower is better)
Translates to: GFPFKPGNPSRPGGP*CPFKPLLPFVPAGP
Trigger: AGGACCAGCTGGTACAAAGGGCAACAAGGGCTTGAAAGGACAGCAAGGCCCACCTGGTCTGGATGGATTGCCAGGCTTAAAGGGAAATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp GGTAGAGGTGTATCCCCTTTGTCCCCTTTAAGTCCTGGATGCCCTTaGTCACCTGGGAATCCTGCAAATCCTGGGAGACCTGCACTTCCT +
Preference number: 5 (lower is better)
Translates to: GRGVSPLSPLSPGCP*SPGNPANPGRPALP
Trigger: AGGAAGTGCAGGTCTCCCAGGATTTGCAGGATTCCCAGGTGACCAAGGGCATCCAGGACTTAAAGGGGACAAAGGGGATACACCTCTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp AGGTTTTCCACGTGGACCTGGTGGTCCTTTGGGCCCAACTGGTCCTaGATGTCCAATTGGCCCAAGAAATCCAGGGTTACCCTTTTCTCC +
Preference number: 5 (lower is better)
Translates to: RFSTWTWWSFGPNWS*MSNWPKKSRVTLFS
Trigger: GGAGAAAAGGGTAACCCTGGATTTCTTGGGCCAATTGGACATCCAGGACCAGTTGGGCCCAAAGGACCACCAGGTCCACGTGGAAAACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp AAGAGAGATGACCTTAAGAGTGCCAGGTTTTCCACGTGGACCTGGTaGTCCTTTGGGCCCAACTGGTCCTGGATGTCCAATTGGCCCAAG +
Preference number: 5 (lower is better)
Translates to: KRDDLKSARFSTWTW*SFGPNWSWMSNWPK
Trigger: CTTGGGCCAATTGGACATCCAGGACCAGTTGGGCCCAAAGGACCACCAGGTCCACGTGGAAAACCTGGCACTCTTAAGGTCATCTCTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp TGGAAGGAACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCGTCCTCTGGGTCCCATaGCTCCTGGTAAACCAAAAA +
Preference number: 5 (lower is better)
Translates to: WKEPHSFAQEWETRNTPCVLWVP*LLVNQK
Trigger: TTTTTGGTTTACCAGGAGCAATGGGACCCAGAGGAC...GCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTTCCTTCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp AACCGCACTCCTTTGCTCAGGAGTGGGAGACAAGGAACACACCGTGCATCCACAGTCCTGGATGTCCAATaGGCCCAAGAAATCCAGGGT +
Preference number: 5 (lower is better)
Translates to: NRTPLLRSGRQGTHRASTVLDVQ*AQEIQG
Trigger: ACCCTGGATTTCTTGGGCCAATTGGACATCCAGGAC...TGTGGATGCACGGTGTGTTCCTTGTCTCCCACTCCTGAGCAAAGGAGTGCGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp GATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGAAACCTACAGGTAAGCCCCTGTTGCCTTaGGCTCCCTCAGTGCCAGGG +
Preference number: 5 (lower is better)
Translates to: DILWQAVAFPQGTLKPTGKPLLP*APSVPG
Trigger: CCCTGGCACTGAGGGAGCCAAAGGCAACAGGGGCTT...ACCTGTAGGTTTCAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp CAGAAGAAGAAAGGGGCCTATGAGCAAATGAAGGGTAGCTGTTGTGACATCAGCACGGATGGTTCTCCCTaGGCTCCTGGGATGCCTGGT +
Preference number: 5 (lower is better)
Translates to: QKKKGAYEQMKGSCCDISTDGSP*APGMPG
Trigger: ACCAGGCATCCCAGGAGCCAAGGGAGAACCATCCGT...GCTGATGTCACAACAGCTACCCTTCATTTGCTCATAGGCCCCTTTCTTCTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp GTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGGAGAACATGAGAGGATGATGCTCCCCCTTATCTCCTaGGGGACCATGGATCCCTGT +
Preference number: 5 (lower is better)
Translates to: VASFLGVCLLSGEHERMMLPLIS*GTMDPC
Trigger: ACAGGGATCCATGGTCCCCAAGGAGATAAGGGGGAG...CATCATCCTCTCATGTTCTCCACTCAATAGGCACACACCCAAGAAACTGGCCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACAGTTCCAGGCAGGCCTTaGGGGCCAGGTGGGCCCATA +
Preference number: 5 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTVPGRP*GPGGPI
Trigger: TATGGGCCCACCTGGCCCCAAAGGCCTGCCTGGAAC...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp GAGACAAAGGTGAAAAGGATTGTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTCTCCTTGGGCTCCCTTaGGACCTGGCTCTCCTTGAG +
Preference number: 5 (lower is better)
Translates to: ETKVKRIVASFLGVCLLSLLGLP*DLALLE
Trigger: CTCAAGGAGAGCCAGGTCCAAAGGGAGCCCAAGGAG...ACTCAATAGGCACACACCCAAGAAACTGGCCACAATCCTTTTCACCTTTGTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp CTGAGACTCTTTGTTTGTTTTCCGTGTAGGGAAGGGGGTGAAGCAGCAGAGGATAGACCTCTGTCTCCTTaGGGGCCAGGGATAATTGCC +
Preference number: 5 (lower is better)
Translates to: LRLFVCFPCREGGEAAEDRPLSP*GPGIIA
Trigger: GGCAATTATCCCTGGCCCCAAAGGAGACAGAGGTCT...ATCCTCTGCTGCTTCACCCCCTTCCCTACACGGAAAACAAACAAAGAGTCTCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACAGGACCTGGTGGTCCTTaGGGCCCAACTGGTCCTGGA +
Preference number: 5 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTGPGGP*GPTGPG
Trigger: TCCAGGACCAGTTGGGCCCAAAGGACCACCAGGTCC...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp CCCTCATCTCCTTTCTCTCCCTTGAAGTCCGATTTGTTGTATGGCTaGGTGAGTGTAAAAATCACTGTTCCTGGTGGCCCAGGAGGTCCT +
Preference number: 5 (lower is better)
Translates to: PSSPFSPLKSDLLYG*VSVKITVPGGPGGP
Trigger: AGGACCTCCTGGGCCACCAGGAACAGTGATTTTTACACTCACCCAGCCATACAACAAATCGGACTTCAAGGGAGAGAAAGGAGATGAGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp CTCTCCCTCATCTCCTTTCTCTCCCTTGAAGTCCGATTTGTTGTATaGCTGGGTGAGTGTAAAAATCACTGTTCCTGGTGGCCCAGGAGG +
Preference number: 5 (lower is better)
Translates to: LSLISFLSLEVRFVV*LGECKNHCSWWPRR
Trigger: CCTCCTGGGCCACCAGGAACAGTGATTTTTACACTCACCCAGCCATACAACAAATCGGACTTCAAGGGAGAGAAAGGAGATGAGGGAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 90 bp CGGAGGGATAGCAGTAGTTTGACTGTGAACAGCTATGGCCATTGCTaGACCTTCACAGACGGTGCATCTGCTAATATAGGGTTCGAGAGC +
Preference number: 5 (lower is better)
Translates to: RRDSSSLTVNSYGHC*TFTDGASANIGFES
Trigger: GCTCTCGAACCCTATATTAGCAGATGCACCGTCTGTGAAGGTCCAGCAATGGCCATAGCTGTTCACAGTCAAACTACTGCTATCCCTCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113457.9
ENSMUST00000152664.2
CDS-3UTR CAA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACATCGCCCATGTGGCCTTaGGGTCCTCTGGGTCCCATT +
Preference number: 5 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTSPMWP*GPLGPI
Trigger: AATGGGACCCAGAGGACCCAAAGGCCACATGGGCGA...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp CAGAGAAACCAGCACTCTGAACTACTGAACCATTTCTCCAGCCACATAGGAAATTGGACCTGGCTCTCCTaGAGGTCCATAGCCTGGTGG +
Preference number: 5 (lower is better)
Translates to: QRNQHSELLNHFSSHIGNWTWLS*RSIAWW
Trigger: CCACCAGGCTATGGACCTCAAGGAGAGCCAGGTCCA...ATTTCCTATGTGGCTGGAGAAATGGTTCAGTAGTTCAGAGTGCTGGTTTCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp TGGTCTCTTTCCACATGGTTGCGAAGAATCTATAACATAAAAATCATGGCGTACCAAGCCGGGAAGTCCTaGGGTGCCCCTGGGTCCTGG +
Preference number: 5 (lower is better)
Translates to: WSLSTWLRRIYNIKIMAYQAGKS*GAPGSW
Trigger: CCAGGACCCAGGGGCACCCAAGGACTTCCCGGCTTG...GTACGCCATGATTTTTATGTTATAGATTCTTCGCAACCATGTGGAAAGAGACCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp CCTCATTTATTCTGTGTTCTAGCCCTTACACCACTCAGCAGCTCTGACCCTCCACCTGGTAACCCTGGGTaGCCTCTGTTTCCTTTCTCA +
Preference number: 5 (lower is better)
Translates to: PHLFCVLALTPLSSSDPPPGNPG*PLFPFS
Trigger: TGAGAAAGGAAACAGAGGCAACCCAGGGTTACCAGG...TGGAGGGTCAGAGCTGCTGAGTGGTGTAAGGGCTAGAACACAGAATAAATGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp CAGAAGAAGAAAGGGGCCTATGAGCAAATGAAGGGTAGCTGTTGTGACATCAGCCTGGTGGTCCTGGTCTaGCACCTTCTGAATAACCCG +
Preference number: 5 (lower is better)
Translates to: QKKKGAYEQMKGSCCDISLVVLV*HLLNNP
Trigger: CGGGTTATTCAGAAGGTGCAAGACCAGGACCACCAG...GCTGATGTCACAACAGCTACCCTTCATTTGCTCATAGGCCCCTTTCTTCTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp TGTGATTTCAGCGATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGCACCTCTCATACCCATaGGCCCAGGAAGTCCTGGGA +
Preference number: 5 (lower is better)
Translates to: CDFSDILWQAVAFPQGTLHLSYP*AQEVLG
Trigger: TCCCAGGACTTCCTGGGCCAATGGGTATGAGAGGTG...CAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATCGCTGAAATCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp TGTGATTTCAGCGATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGCAGACCAGGTGGGCCTaGCTGTCCTTTCAAGCCCTT +
Preference number: 5 (lower is better)
Translates to: CDFSDILWQAVAFPQGTLQTRWA*LSFQAL
Trigger: AAGGGCTTGAAAGGACAGCAAGGCCCACCTGGTCTG...CAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATCGCTGAAATCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS TCA 90 bp AAGAAGAGAAAACCCACTATAGAGTGGCTGTGTTCCTTCAGGGCATaGAGGAATGGCCGTGGTTTGACTGTGTCGGGTGAAGATGAAGCC +
Preference number: 5 (lower is better)
Translates to: KKRKPTIEWLCSFRA*RNGRGLTVSGEDEA
Trigger: GGCTTCATCTTCACCCGACACAGTCAAACCACGGCCATTCCTTCATGCCCTGAAGGAACACAGCCACTCTATAGTGGGTTTTCTCTTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000113457.9
ENSMUST00000125563.8
ENSMUST00000152664.2
CDS GCA 90 bp ACACGGAGGGATAGCAGTAGTTTGACTGTGAACAGCTATGGCCATTaGTGGACCTTCACAGACGGTGCATCTGCTAATATAGGGTTCGAG +
Preference number: 5 (lower is better)
Translates to: TRRDSSSLTVNSYGH*WTFTDGASANIGFE
Trigger: CTCGAACCCTATATTAGCAGATGCACCGTCTGTGAAGGTCCAGCAATGGCCATAGCTGTTCACAGTCAAACTACTGCTATCCCTCCGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113457.9
ENSMUST00000152664.2
CDS CCA 90 bp TTCATACCCCTTTCTCCTTTTTGTCCTATCACGCTATCGCCCATGTaGCCTTTGGGTCCTCTGGGTCCCATTGCTCCTGGTAAACCAAAA +
Preference number: 5 (lower is better)
Translates to: FIPLSPFCPITLSPM*PLGPLGPIAPGKPK
Trigger: TTTTGGTTTACCAGGAGCAATGGGACCCAGAGGACCCAAAGGCCACATGGGCGATAGCGTGATAGGACAAAAAGGAGAAAGGGGTATGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp TGTGATTTCAGCGATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGTCCCCTGTCTTCTCCTaGAGCAGGCTCACCCTTTTG +
Preference number: 5 (lower is better)
Translates to: CDFSDILWQAVAFPQGTLSPVFS*SRLTLL
Trigger: CAAAAGGGTGAGCCTGCTCAAGGAGAAGACAGGGGA...CAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATCGCTGAAATCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp GAGACAAAGGTGAAAAGGATTGTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTGAACAGCTATGGCCATaGCTGGACCTTCACAGACGG +
Preference number: 5 (lower is better)
Translates to: ETKVKRIVASFLGVCLLSEQLWP*LDLHRR
Trigger: CCGTCTGTGAAGGTCCAGCAATGGCCATAGCTGTTC...ACTCAATAGGCACACACCCAAGAAACTGGCCACAATCCTTTTCACCTTTGTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS TCA 90 bp CCTTTAAGTCCAGGCTCTCCTTTGTCTCCCTTTAAGAGTGTTGTTTaGGAAGGCCCTGGTTTTCCTTTCTCTCCTCGTTCGCCTTTGGCT +
Preference number: 5 (lower is better)
Translates to: PLSPGSPLSPFKSVV*EGPGFPFSPRSPLA
Trigger: AGCCAAAGGCGAACGAGGAGAGAAAGGAAAACCAGGGCCTTCTCAAACAACACTCTTAAAGGGAGACAAAGGAGAGCCTGGACTTAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACAGGAACACCAGGAACCTaGGAGCAGTCTTGGAGTGCA +
Preference number: 5 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTGTPGT*EQSWSA
Trigger: TGCACTCCAAGACTGCTCCAAGGTTCCTGGTGTTCC...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp AGACACAGATTTCTGTTTGCTAGTTACAGTTTCAAACTTTGCAGGTTTAGAATGAGTCCTGGGGAGCCCTaGGGTCCCTGTGGTCCAGGC +
Preference number: 5 (lower is better)
Translates to: RHRFLFASYSFKLCRFRMSPGEP*GPCGPG
Trigger: GCCTGGACCACAGGGACCCAAGGGCTCCCCAGGACT...CATTCTAAACCTGCAAAGTTTGAAACTGTAACTAGCAAACAGAAATCTGTGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp CTGAGACTCTTTGTTTGTTTTCCGTGTAGGGAAGGGGGTGAAGCAGCAGAGGATAACCAGGTGATCCTTTaGTCCCTGGGAAACCTTGAT +
Preference number: 5 (lower is better)
Translates to: LRLFVCFPCREGGEAAEDNQVIL*SLGNLD
Trigger: ATCAAGGTTTCCCAGGGACAAAAGGATCACCTGGTT...ATCCTCTGCTGCTTCACCCCCTTCCCTACACGGAAAACAAACAAAGAGTCTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp CCTCATTTATTCTGTGTTCTAGCCCTTACACCACTCAGCAGCTCTGACCCTCCAACCTCTTCGACCTGGTaGCCCTTTCAATCCATTCAA +
Preference number: 5 (lower is better)
Translates to: PHLFCVLALTPLSSSDPPTSSTW*PFQSIQ
Trigger: TTGAATGGATTGAAAGGGCAACCAGGTCGAAGAGGT...TGGAGGGTCAGAGCTGCTGAGTGGTGTAAGGGCTAGAACACAGAATAAATGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp CCTCATTTATTCTGTGTTCTAGCCCTTACACCACTCAGCAGCTCTGACCCTCCATCTCCTTTCTTTCCTTaGTCACCTGGCAATCCTGGA +
Preference number: 5 (lower is better)
Translates to: PHLFCVLALTPLSSSDPPSPFFP*SPGNPG
Trigger: TCCAGGATTGCCAGGTGACAAAGGAAAGAAAGGAGA...TGGAGGGTCAGAGCTGCTGAGTGGTGTAAGGGCTAGAACACAGAATAAATGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp TGGTCTCTTTCCACATGGTTGCGAAGAATCTATAACATAAAAATCATGGCGTACCCCCGCGCAGAGGCATaGTCCTTTGCCTTTGCAGAC +
Preference number: 5 (lower is better)
Translates to: WSLSTWLRRIYNIKIMAYPRAEA*SFAFAD
Trigger: GTCTGCAAAGGCAAAGGACAATGCCTCTGCGCGGGG...GTACGCCATGATTTTTATGTTATAGATTCTTCGCAACCATGTGGAAAGAGACCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp CAGAGAAACCAGCACTCTGAACTACTGAACCATTTCTCCAGCCACATAGGAAATAGCAGGCTCACCCTTTaGTCCTTTCAAGCCATCAGG +
Preference number: 5 (lower is better)
Translates to: QRNQHSELLNHFSSHIGNSRLTL*SFQAIR
Trigger: CCTGATGGCTTGAAAGGACAAAAGGGTGAGCCTGCT...ATTTCCTATGTGGCTGGAGAAATGGTTCAGTAGTTCAGAGTGCTGGTTTCTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp GAGACAAAGGTGAAAAGGATTGTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTCCATTTTCCCCAGCATaGCCTCTTTCTCCTGGAAAG +
Preference number: 5 (lower is better)
Translates to: ETKVKRIVASFLGVCLLSPFSPA*PLSPGK
Trigger: CTTTCCAGGAGAAAGAGGCAATGCTGGGGAAAATGG...ACTCAATAGGCACACACCCAAGAAACTGGCCACAATCCTTTTCACCTTTGTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp TGGTCTCTTTCCACATGGTTGCGAAGAATCTATAACATAAAAATCATGGCGTACACTCCCCTGTCTCCTTaGGCACCTGGTACACCAGGG +
Preference number: 5 (lower is better)
Translates to: WSLSTWLRRIYNIKIMAYTPLSP*APGTPG
Trigger: CCCTGGTGTACCAGGTGCCAAAGGAGACAGGGGAGT...GTACGCCATGATTTTTATGTTATAGATTCTTCGCAACCATGTGGAAAGAGACCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp AGCACCCTCAGAGCCTGCACTTGTGAACATAATGAAAGAAAAACCTTTCCAGAGAGGAATGGCCGTGGTTaGACTGTGTCGGGTGAAGAT +
Preference number: 5 (lower is better)
Translates to: STLRACTCEHNERKTFPERNGRG*TVSGED
Trigger: ATCTTCACCCGACACAGTCAAACCACGGCCATTCCT...CTCTGGAAAGGTTTTTCTTTCATTATGTTCACAAGTGCAGGCTCTGAGGGTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125563.8
CDS-3UTR CAA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACATTGGAGCCATGTCCATaGGCATCAGAGCTGGTGTTG +
Preference number: 5 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTLEPCP*ASELVL
Trigger: CAACACCAGCTCTGATGCCAATGGACATGGCTCCAA...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp CAGAGAAACCAGCACTCTGAACTACTGAACCATTTCTCCAGCCACATAGGAAATGGGTCACCTTTTCCATaGAATCCCCTGTCTTCTCCT +
Preference number: 5 (lower is better)
Translates to: QRNQHSELLNHFSSHIGNGSPFP*NPLSSP
Trigger: AGGAGAAGACAGGGGATTCAATGGAAAAGGTGACCC...ATTTCCTATGTGGCTGGAGAAATGGTTCAGTAGTTCAGAGTGCTGGTTTCTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp TGTGATTTCAGCGATATTCTGTGGCAAGCTGTTGCCTTTCCACAGGGAACTTTGCTCCCTTTAAGAGTGTaGTTTGAGAAGGCCCTGGTT +
Preference number: 5 (lower is better)
Translates to: CDFSDILWQAVAFPQGTLLPLRV*FEKALV
Trigger: AACCAGGGCCTTCTCAAACAACACTCTTAAAGGGAG...CAAAGTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATCGCTGAAATCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp CTGAGACTCTTTGTTTGTTTTCCGTGTAGGGAAGGGGGTGAAGCAGCAGAGGATGGGCCCATAAATCCTTaGTCACCTTTTATGCCTTTT +
Preference number: 5 (lower is better)
Translates to: LRLFVCFPCREGGEAAEDGPINP*SPFMPF
Trigger: AAAAGGCATAAAAGGTGACAAAGGATTTATGGGCCC...ATCCTCTGCTGCTTCACCCCCTTCCCTACACGGAAAACAAACAAAGAGTCTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp AAACCTTTCCAGAGAGAAACCCAGTCCTGGGGACACGGAGGGATAGCAGTAGTTTGTCCATGTGCACGTTaGTTTCCTTGTACAAAAAGA +
Preference number: 5 (lower is better)
Translates to: KPFQRETQSWGHGGIAVVCPCAR*FPCTKR
Trigger: TCTTTTTGTACAAGGAAACAAACGTGCACATGGACA...AACTACTGCTATCCCTCCGTGTCCCCAGGACTGGGTTTCTCTCTGGAAAGGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125563.8
CDS-3UTR CAA 90 bp AGACACAGATTTCTGTTTGCTAGTTACAGTTTCAAACTTTGCAGGTTTAGAATGCCAGGAAAGCCCCTGTaGCCTTTGGCTCCCTCAGTG +
Preference number: 5 (lower is better)
Translates to: RHRFLFASYSFKLCRFRMPGKPL*PLAPSV
Trigger: CACTGAGGGAGCCAAAGGCAACAGGGGCTTTCCTGG...CATTCTAAACCTGCAAAGTTTGAAACTGTAACTAGCAAACAGAAATCTGTGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp CAGAGAAACCAGCACTCTGAACTACTGAACCATTTCTCCAGCCACATAGGAAATCCTCCTGGGATTCCTTaGATACCATCTAATCCTGGA +
Preference number: 5 (lower is better)
Translates to: QRNQHSELLNHFSSHIGNPPGIP*IPSNPG
Trigger: TCCAGGATTAGATGGTATCAAAGGAATCCCAGGAGG...ATTTCCTATGTGGCTGGAGAAATGGTTCAGTAGTTCAGAGTGCTGGTTTCTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp AGACACAGATTTCTGTTTGCTAGTTACAGTTTCAAACTTTGCAGGTTTAGAATGATCCTGGATCGCCCTTaGGTCCTGGTGGTCCTGGTC +
Preference number: 5 (lower is better)
Translates to: RHRFLFASYSFKLCRFRMILDRP*VLVVLV
Trigger: GACCAGGACCACCAGGACCAAAGGGCGATCCAGGAT...CATTCTAAACCTGCAAAGTTTGAAACTGTAACTAGCAAACAGAAATCTGTGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp ACACTGGCCAAGGAGATTAGTCCTTGTTTTCACTACTGGAATGTATGTGGGACAAGGGATAGCAGTAGTTaGACTGTGAACAGCTATGGC +
Preference number: 5 (lower is better)
Translates to: TLAKEISPCFHYWNVCGTRDSSS*TVNSYG
Trigger: GCCATAGCTGTTCACAGTCAAACTACTGCTATCCCT...TGTCCCACATACATTCCAGTAGTGAAAACAAGGACTAATCTCCTTGGCCAGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp TGGTCTCTTTCCACATGGTTGCGAAGAATCTATAACATAAAAATCATGGCGTACAGGAATGGCCGTGGTTaGACTGTGTCGGGTGAAGAT +
Preference number: 5 (lower is better)
Translates to: WSLSTWLRRIYNIKIMAYRNGRG*TVSGED
Trigger: ATCTTCACCCGACACAGTCAAACCACGGCCATTCCT...GTACGCCATGATTTTTATGTTATAGATTCTTCGCAACCATGTGGAAAGAGACCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp ACCGCCGGTCCAGTCCAGTATATGGGAAATAGTTTGGAACTGAAGAAAACAACTGCATCAGAGCTGGTGTaGACAGCCAGTATGAATAAT +
Preference number: 5 (lower is better)
Translates to: TAGPVQYMGNSLELKKTTASELV*TASMNN
Trigger: ATTATTCATACTGGCTGTCAACACCAGCTCTGATGC...AGTTGTTTTCTTCAGTTCCAAACTATTTCCCATATACTGGACTGGACCGGCGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp GAGACAAAGGTGAAAAGGATTGTGGCCAGTTTCTTGGGTGTGTGCCTATTGAGTTGTCCATGTGCACGTTaGTTTCCTTGTACAAAAAGA +
Preference number: 5 (lower is better)
Translates to: ETKVKRIVASFLGVCLLSCPCAR*FPCTKR
Trigger: TCTTTTTGTACAAGGAAACAAACGTGCACATGGACA...ACTCAATAGGCACACACCCAAGAAACTGGCCACAATCCTTTTCACCTTTGTCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS-3UTR CAA 90 bp AGACACAGATTTCTGTTTGCTAGTTACAGTTTCAAACTTTGCAGGTTTAGAATGAGAGGTGTATCCCCTTaGTCCCCTTTAAGTCCTGGA +
Preference number: 5 (lower is better)
Translates to: RHRFLFASYSFKLCRFRMRGVSP*SPLSPG
Trigger: TCCAGGACTTAAAGGGGACAAAGGGGATACACCTCT...CATTCTAAACCTGCAAAGTTTGAAACTGTAACTAGCAAACAGAAATCTGTGTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp GGGAAGACCGGGGGTACCTGGTGCTCCCGGGAAACCTaGTGGGCCCATGTCCCCTACAGTTCCAGGCAGGCC +
Preference number: 6 (lower is better)
Translates to: GKTGGTWCSRET*WAHVPYSSRQA
Trigger: GGCCTGCCTGGAACTGTAGGGGACATGGGCCCACCAGGTTTCCCGGGAGCACCAGGTACCCCCGGTCTTCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp CCTGATGCCTTTGGGGCCAGTGAGTCCCGGAAGTCCTaGGGAGCCCTTGGGTCCCTGTGGTCCAGGCAAGCC +
Preference number: 6 (lower is better)
Translates to: PDAFGASESRKS*GALGSLWSRQA
Trigger: GGCTTGCCTGGACCACAGGGACCCAAGGGCTCCCCAGGACTTCCGGGACTCACTGGCCCCAAAGGCATCAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp CGGAGGTCCTGGTGGACCGGCAGGCCCTGGAAAACCTaGGAGTCCCGGAAAACCCTGGAAGCCTGGAACCCC +
Preference number: 6 (lower is better)
Translates to: RRSWWTGRPWKT*ESRKTLEAWNP
Trigger: GGGGTTCCAGGCTTCCAGGGTTTTCCGGGACTCCCAGGTTTTCCAGGGCCTGCCGGTCCACCAGGACCTCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp TGGATCACCTCTGACACCGGGAAGACCGGGGGTACCTaGTGCTCCCGGGAAACCTGGTGGGCCCATGTCCCC +
Preference number: 6 (lower is better)
Translates to: WITSDTGKTGGT*CSRETWWAHVP
Trigger: GGGGACATGGGCCCACCAGGTTTCCCGGGAGCACCAGGTACCCCCGGTCTTCCCGGTGTCAGAGGTGATCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 72 bp GGCTTCTCCAGGTGGTCCCAGGACGCCGGGGACTCCTaGGGCTCCCTTTGGACCTGGCTCTCCTTGAGGTCC +
Preference number: 6 (lower is better)
Translates to: GFSRWSQDAGDS*GSLWTWLSLRS
Trigger: GGACCTCAAGGAGAGCCAGGTCCAAAGGGAGCCCAAGGAGTCCCCGGCGTCCTGGGACCACCTGGAGAAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS TCA 72 bp CATTCCTGGGATTCCGAGGCTACCTCGCTGCCCCTGTaGGCCTGGTTTCCCAGGAAGCCCCGGAGGGCCAGT +
Preference number: 6 (lower is better)
Translates to: HSWDSEATSLPL*AWFPRKPRRAS
Trigger: ACTGGCCCTCCGGGGCTTCCTGGGAAACCAGGCTCACAGGGGCAGCGAGGTAGCCTCGGAATCCCAGGAATG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp CAGGACGCCGGGGACTCCTTGGGCTCCCTTTGGACCTaGCTCTCCTTGAGGTCCATAGCCTGGTGGTCCAGC +
Preference number: 6 (lower is better)
Translates to: QDAGDSLGSLWT*LSLRSIAWWSS
Trigger: GCTGGACCACCAGGCTATGGACCTCAAGGAGAGCCAGGTCCAAAGGGAGCCCAAGGAGTCCCCGGCGTCCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp TGGTCCCAGGACGCCGGGGACTCCTTGGGCTCCCTTTaGACCTGGCTCTCCTTGAGGTCCATAGCCTGGTGG +
Preference number: 6 (lower is better)
Translates to: WSQDAGDSLGSL*TWLSLRSIAWW
Trigger: CCACCAGGCTATGGACCTCAAGGAGAGCCAGGTCCAAAGGGAGCCCAAGGAGTCCCCGGCGTCCTGGGACCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 72 bp GTGGTCCCAGGACGCCGGGGACTCCTTGGGCTCCCTTaGGACCTGGCTCTCCTTGAGGTCCATAGCCTGGTG +
Preference number: 6 (lower is better)
Translates to: VVPGRRGLLGLP*DLALLEVHSLV
Trigger: CACCAGGCTATGGACCTCAAGGAGAGCCAGGTCCAAAGGGAGCCCAAGGAGTCCCCGGCGTCCTGGGACCAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 90 bp CTTCTCCAGGTGGTCCCAGGACGCCGGGGACTCCTTGGGCTCCCTTaGGACCTGGCTCTCCTTGAGGTCCATAGCCTGGTGGTCCAGCTG +
Preference number: 6 (lower is better)
Translates to: LLQVVPGRRGLLGLP*DLALLEVHSLVVQL
Trigger: CAGCTGGACCACCAGGCTATGGACCTCAAGGAGAGCCAGGTCCAAAGGGAGCCCAAGGAGTCCCCGGCGTCCTGGGACCACCTGGAGAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp AAGACCGGGGGTACCTGGTGCTCCCGGGAAACCTGGTaGGCCCATGTCCCCTACAGTTCCAGGCAGGCCTTT +
Preference number: 6 (lower is better)
Translates to: KTGGTWCSRETW*AHVPYSSRQAF
Trigger: AAAGGCCTGCCTGGAACTGTAGGGGACATGGGCCCACCAGGTTTCCCGGGAGCACCAGGTACCCCCGGTCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 72 bp ACTCCCAGGGGCTCCATCAGGTCCGGCAGGCCCCGATaGTCCAGGTGGCCCAGGTACGCCTCTTTCTCCTTT +
Preference number: 6 (lower is better)
Translates to: TPRGSIRSGRPR*SRWPRYASFSF
Trigger: AAAGGAGAAAGAGGCGTACCTGGGCCACCTGGACAATCGGGGCCTGCCGGACCTGATGGAGCCCCTGGGAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 90 bp TTTAAGACCGGCTTCTCCAGGTGGTCCCAGGACGCCGGGGACTCCTaGGGCTCCCTTTGGACCTGGCTCTCCTTGAGGTCCATAGCCTGG +
Preference number: 6 (lower is better)
Translates to: FKTGFSRWSQDAGDS*GSLWTWLSLRSIAW
Trigger: CCAGGCTATGGACCTCAAGGAGAGCCAGGTCCAAAGGGAGCCCAAGGAGTCCCCGGCGTCCTGGGACCACCTGGAGAAGCCGGTCTTAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS GCA 72 bp TCCCCTTTCATTCCTGGGATTCCGAGGCTACCTCGCTaGCCCTGTGAGCCTGGTTTCCCAGGAAGCCCCGGA +
Preference number: 6 (lower is better)
Translates to: SPFIPGIPRLPR*PCEPGFPGSPG
Trigger: TCCGGGGCTTCCTGGGAAACCAGGCTCACAGGGGCAGCGAGGTAGCCTCGGAATCCCAGGAATGAAAGGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp TTTCCTTCCACTCAGGGCCGGTTCGCCCTGAGGTCCTaGTGGTCCTTTCGCTCCTGGACCTCCAGGAGTTCC +
Preference number: 6 (lower is better)
Translates to: FPSTQGRFALRS*WSFRSWTSRSS
Trigger: GGAACTCCTGGAGGTCCAGGAGCGAAAGGACCACCAGGACCTCAGGGCGAACCGGCCCTGAGTGGAAGGAAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp GCCTGGTTTCCCTGGTTTCCCAGGCCTGCCTACGGATaGTTCTCCCTTGGCTCCTGGGATGCCTGGTTCTCC +
Preference number: 6 (lower is better)
Translates to: AWFPWFPRPAYG*FSLGSWDAWFS
Trigger: GGAGAACCAGGCATCCCAGGAGCCAAGGGAGAACCATCCGTAGGCAGGCCTGGGAAACCAGGGAAACCAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp AGGTGGTCCCATCTCACCAGGACAACCTGGTGTTCCTaGTGGTCCAGGATCTCCGGGGACCCCAGACCTGTC +
Preference number: 6 (lower is better)
Translates to: RWSHLTRTTWCS*WSRISGDPRPV
Trigger: GACAGGTCTGGGGTCCCCGGAGATCCTGGACCACCAGGAACACCAGGTTGTCCTGGTGAGATGGGACCACCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 90 bp CCCTTCTCCCCTTTGGTCCCCGCGCAGAGGCATTGTCCTTTGCCTTaGCAGACACAGCCCTTGCTAGCCACAGGAGAGGCAGCCAGGAGT +
Preference number: 6 (lower is better)
Translates to: PFSPLVPAQRHCPLP*QTQPLLATGEAARS
Trigger: ACTCCTGGCTGCCTCTCCTGTGGCTAGCAAGGGCTGTGTCTGCAAAGGCAAAGGACAATGCCTCTGCGCGGGGACCAAAGGGGAGAAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS TCA 72 bp GAGTTCCATCGAAGCCCTTTCTCCCGGGCAGGCCTCTaGGTCCAGGATCACCTGGATTACCCACTTGCCCCC +
Preference number: 6 (lower is better)
Translates to: EFHRSPFSRAGL*VQDHLDYPLAP
Trigger: GGGGGCAAGTGGGTAATCCAGGTGATCCTGGACTCAGAGGCCTGCCCGGGAGAAAGGGCTTCGATGGAACTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp TCCAGGGGGCCCTGGGAAGCAGTGACACTCGGTGCATaGACTGCCTGGTTCTCCTTTGGGTCCATCAAGTCC +
Preference number: 6 (lower is better)
Translates to: SRGPWEAVTLGA*TAWFSFGSIKS
Trigger: GGACTTGATGGACCCAAAGGAGAACCAGGCAGTCCATGCACCGAGTGTCACTGCTTCCCAGGGCCCCCTGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp TGTACTGGGTTCTCCTTTAAGACCGGCTTCTCCAGGTaGTCCCAGGACGCCGGGGACTCCTTGGGCTCCCTT +
Preference number: 6 (lower is better)
Translates to: CTGFSFKTGFSR*SQDAGDSLGSL
Trigger: AAGGGAGCCCAAGGAGTCCCCGGCGTCCTGGGACCACCTGGAGAAGCCGGTCTTAAAGGAGAACCCAGTACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 72 bp TGTCTCCTTTGGCACCTGGTACACCAGGGCTCCCTTTaGGGCCTGGGTAGGCCCCCAGCAAGCCTGTTTCTC +
Preference number: 6 (lower is better)
Translates to: CLLWHLVHQGSL*GLGRPPASLFL
Trigger: GAGAAACAGGCTTGCTGGGGGCCTACCCAGGCCCAAAAGGGAGCCCTGGTGTACCAGGTGCCAAAGGAGACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 72 bp GGTGGGCCCATGTCCCCTACAGTTCCAGGCAGGCCTTaGGGGCCAGGTGGGCCCATAAATCCTTTGTCACCT +
Preference number: 6 (lower is better)
Translates to: GGPMSPTVPGRP*GPGGPINPLSP
Trigger: AGGTGACAAAGGATTTATGGGCCCACCTGGCCCCAAAGGCCTGCCTGGAACTGTAGGGGACATGGGCCCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS TCA 72 bp TTATGCCTGGAAATCCAGGGAATCCTGGATCACCTCTaGCACCGGGAAGACCGGGGGTACCTGGTGCTCCCG +
Preference number: 6 (lower is better)
Translates to: LCLEIQGILDHL*HREDRGYLVLP
Trigger: CGGGAGCACCAGGTACCCCCGGTCTTCCCGGTGTCAGAGGTGATCCAGGATTCCCTGGATTTCCAGGCATAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS GCA 72 bp CTTTTGTCCTTTCAAGCCATCAGGACCTGGGAGCCCTaGATAGCCTGGTGTGCCGGGAAAGCCCGGGAATCC +
Preference number: 6 (lower is better)
Translates to: LLSFQAIRTWEP*IAWCAGKARES
Trigger: GGATTCCCGGGCTTTCCCGGCACACCAGGCTATGCAGGGCTCCCAGGTCCTGATGGCTTGAAAGGACAAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp AGGCTCACCCTTTTGTCCTTTCAAGCCATCAGGACCTaGGAGCCCTGCATAGCCTGGTGTGCCGGGAAAGCC +
Preference number: 6 (lower is better)
Translates to: RLTLLSFQAIRT*EPCIAWCAGKA
Trigger: GGCTTTCCCGGCACACCAGGCTATGCAGGGCTCCCAGGTCCTGATGGCTTGAAAGGACAAAAGGGTGAGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp TGGATGCCCTTGGTCACCTGGGAATCCTGCAAATCCTaGGAGACCTGCACTTCCTGGGGACCCTGGGTTTCC +
Preference number: 6 (lower is better)
Translates to: WMPLVTWESCKS*ETCTSWGPWVS
Trigger: GGAAACCCAGGGTCCCCAGGAAGTGCAGGTCTCCCAGGATTTGCAGGATTCCCAGGTGACCAAGGGCATCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp GGTTGCCCTTTCAATCCATTCAAGCCGGGAAGTCCTTaGGTGCCCCTGGGTCCTGGTATGCACCTTCCTGGG +
Preference number: 6 (lower is better)
Translates to: GCPFNPFKPGSP*VPLGPGMHLPG
Trigger: CCCAGGAAGGTGCATACCAGGACCCAGGGGCACCCAAGGACTTCCCGGCTTGAATGGATTGAAAGGGCAACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp TTTTTGTCCAGGTGGTCCCATCTCACCAGGACAACCTaGTGTTCCTGGTGGTCCAGGATCTCCGGGGACCCC +
Preference number: 6 (lower is better)
Translates to: FLSRWSHLTRTT*CSWWSRISGDP
Trigger: GGGGTCCCCGGAGATCCTGGACCACCAGGAACACCAGGTTGTCCTGGTGAGATGGGACCACCTGGACAAAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp GTGAGCCTGGTTTCCCAGGAAGCCCCGGAGGGCCAGTaGTTCCAGGATAGCCCATCATTCCAACCTCTCCTT +
Preference number: 6 (lower is better)
Translates to: VSLVSQEAPEGQ*FQDSPSFQPLL
Trigger: AAGGAGAGGTTGGAATGATGGGCTATCCTGGAACCACTGGCCCTCCGGGGCTTCCTGGGAAACCAGGCTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 72 bp GTACCAGCTGGTCCTGGAGTTCCTGGTTTCCCATCCTaGCCTGGTTTACCTCTTGGCCCACAGGGTCCTGGG +
Preference number: 6 (lower is better)
Translates to: VPAGPGVPGFPS*PGLPLGPQGPG
Trigger: CCCAGGACCCTGTGGGCCAAGAGGTAAACCAGGCAAGGATGGGAAACCAGGAACTCCAGGACCAGCTGGTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 90 bp GGCTCACCTGGATTTCCTCTTAAGCCAGGAAGACCTCTGTCTCCTTaGGGGCCAGGGATAATTGCCCCAGGTAGACCTGGTGGCCCTGGG +
Preference number: 6 (lower is better)
Translates to: GSPGFPLKPGRPLSP*GPGIIAPGRPGGPG
Trigger: CCCAGGGCCACCAGGTCTACCTGGGGCAATTATCCCTGGCCCCAAAGGAGACAGAGGTCTTCCTGGCTTAAGAGGAAATCCAGGTGAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 90 bp TTGCCCTTTGTACCAGCTGGTCCTGGAGTTCCTGGTTTCCCATCCTaGCCTGGTTTACCTCTTGGCCCACAGGGTCCTGGGATTCCTGGC +
Preference number: 6 (lower is better)
Translates to: LPFVPAGPGVPGFPS*PGLPLGPQGPGIPG
Trigger: GCCAGGAATCCCAGGACCCTGTGGGCCAAGAGGTAAACCAGGCAAGGATGGGAAACCAGGAACTCCAGGACCAGCTGGTACAAAGGGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS TCA 72 bp TACTCCCTTTCAAGCCTGGCCATCCAATGGGTCCTCTaGGGCCAGGCCTTGACAGTCCAGGACTTCCAGGGA +
Preference number: 6 (lower is better)
Translates to: YSLSSLAIQWVL*GQALTVQDFQG
Trigger: TCCCTGGAAGTCCTGGACTGTCAAGGCCTGGCCTCAGAGGACCCATTGGATGGCCAGGCTTGAAAGGGAGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS GCA 72 bp TACCAGCTGGTCCTGGAGTTCCTGGTTTCCCATCCTTaGCTGGTTTACCTCTTGGCCCACAGGGTCCTGGGA +
Preference number: 6 (lower is better)
Translates to: YQLVLEFLVSHP*LVYLLAHRVLG
Trigger: TCCCAGGACCCTGTGGGCCAAGAGGTAAACCAGGCAAGGATGGGAAACCAGGAACTCCAGGACCAGCTGGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp AGCTGGTCCTGGAGTTCCTGGTTTCCCATCCTTGCCTaGTTTACCTCTTGGCCCACAGGGTCCTGGGATTCC +
Preference number: 6 (lower is better)
Translates to: SWSWSSWFPILA*FTSWPTGSWDS
Trigger: GGAATCCCAGGACCCTGTGGGCCAAGAGGTAAACCAGGCAAGGATGGGAAACCAGGAACTCCAGGACCAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 72 bp CAGAGGCATTGTCCTTTGCCTTTGCAGACACAGCCCTaGCTAGCCACAGGAGAGGCAGCCAGGAGTAGCAGC +
Preference number: 6 (lower is better)
Translates to: QRHCPLPLQTQP*LATGEAARSSS
Trigger: GCTGCTACTCCTGGCTGCCTCTCCTGTGGCTAGCAAGGGCTGTGTCTGCAAAGGCAAAGGACAATGCCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 72 bp TTCTCCCCTTTGGTCCCCGCGCAGAGGCATTGTCCTTaGCCTTTGCAGACACAGCCCTTGCTAGCCACAGGA +
Preference number: 6 (lower is better)
Translates to: FSPLVPAQRHCP*PLQTQPLLATG
Trigger: TCCTGTGGCTAGCAAGGGCTGTGTCTGCAAAGGCAAAGGACAATGCCTCTGCGCGGGGACCAAAGGGGAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 72 bp TGGTTGCCCTTTCAATCCATTCAAGCCGGGAAGTCCTaGGGTGCCCCTGGGTCCTGGTATGCACCTTCCTGG +
Preference number: 6 (lower is better)
Translates to: WLPFQSIQAGKS*GAPGSWYAPSW
Trigger: CCAGGAAGGTGCATACCAGGACCCAGGGGCACCCAAGGACTTCCCGGCTTGAATGGATTGAAAGGGCAACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 72 bp AGAGTGCCAGGTTTTCCACGTGGACCTGGTGGTCCTTaGGGCCCAACTGGTCCTGGATGTCCAATTGGCCCA +
Preference number: 6 (lower is better)
Translates to: RVPGFPRGPGGP*GPTGPGCPIGP
Trigger: TGGGCCAATTGGACATCCAGGACCAGTTGGGCCCAAAGGACCACCAGGTCCACGTGGAAAACCTGGCACTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 90 bp TCTTCGACCTGGTTGCCCTTTCAATCCATTCAAGCCGGGAAGTCCTaGGGTGCCCCTGGGTCCTGGTATGCACCTTCCTGGGGATCCTTT +
Preference number: 6 (lower is better)
Translates to: SSTWLPFQSIQAGKS*GAPGSWYAPSWGSF
Trigger: AAAGGATCCCCAGGAAGGTGCATACCAGGACCCAGGGGCACCCAAGGACTTCCCGGCTTGAATGGATTGAAAGGGCAACCAGGTCGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp GGTCCAGGCAAGCCTTCAGGACCTGGAAATCCTTTCTaGCCAGGAAATCCAGGGGAACCAGGAACCCCTTTC +
Preference number: 6 (lower is better)
Translates to: GPGKPSGPGNPF*PGNPGEPGTPF
Trigger: GAAAGGGGTTCCTGGTTCCCCTGGATTTCCTGGCCAGAAAGGATTTCCAGGTCCTGAAGGCTTGCCTGGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp AGTGACACTCGGTGCATGGACTGCCTGGTTCTCCTTTaGGTCCATCAAGTCCTGGAACTCCTGGAGGTCCTG +
Preference number: 6 (lower is better)
Translates to: SDTRCMDCLVLL*VHQVLELLEVL
Trigger: CAGGACCTCCAGGAGTTCCAGGACTTGATGGACCCAAAGGAGAACCAGGCAGTCCATGCACCGAGTGTCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp CATGATCCCCATGCTTCCTGGCATGCCGTGTGGTCCTaGTCTTCCAGGATTTCCTCTGCTTCCCGTATCTCC +
Preference number: 6 (lower is better)
Translates to: HDPHASWHAVWS*SSRISSASRIS
Trigger: GGAGATACGGGAAGCAGAGGAAATCCTGGAAGACCAGGACCACACGGCATGCCAGGAAGCATGGGGATCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp GATGACCTTAAGAGTGCCAGGTTTTCCACGTGGACCTaGTGGTCCTTTGGGCCCAACTGGTCCTGGATGTCC +
Preference number: 6 (lower is better)
Translates to: DDLKSARFSTWT*WSFGPNWSWMS
Trigger: GGACATCCAGGACCAGTTGGGCCCAAAGGACCACCAGGTCCACGTGGAAAACCTGGCACTCTTAAGGTCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 72 bp GAATCCCCTGTCTTCTCCTTGAGCAGGCTCACCCTTTaGTCCTTTCAAGCCATCAGGACCTGGGAGCCCTGC +
Preference number: 6 (lower is better)
Translates to: ESPVFSLSRLTL*SFQAIRTWEPC
Trigger: GCAGGGCTCCCAGGTCCTGATGGCTTGAAAGGACAAAAGGGTGAGCCTGCTCAAGGAGAAGACAGGGGATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 72 bp TGGTCCTGGGAATCCTGGAGCTCCCGGATATCCTTTTaGTCCAGGTGGTCCCATCTCACCAGGACAACCTGG +
Preference number: 6 (lower is better)
Translates to: WSWESWSSRISF*SRWSHLTRTTW
Trigger: CCAGGTTGTCCTGGTGAGATGGGACCACCTGGACAAAAAGGATATCCGGGAGCTCCAGGATTCCCAGGACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 72 bp AGACCAGGTGGGCCTTGCTGTCCTTTCAAGCCCTTGTaGCCCTTTGTACCAGCTGGTCCTGGAGTTCCTGGT +
Preference number: 6 (lower is better)
Translates to: RPGGPCCPFKPL*PFVPAGPGVPG
Trigger: ACCAGGAACTCCAGGACCAGCTGGTACAAAGGGCAACAAGGGCTTGAAAGGACAGCAAGGCCCACCTGGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 72 bp TCCAGACCAGGTGGGCCTTGCTGTCCTTTCAAGCCCTaGTTGCCCTTTGTACCAGCTGGTCCTGGAGTTCCT +
Preference number: 6 (lower is better)
Translates to: SRPGGPCCPFKP*LPFVPAGPGVP
Trigger: AGGAACTCCAGGACCAGCTGGTACAAAGGGCAACAAGGGCTTGAAAGGACAGCAAGGCCCACCTGGTCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp TGGTTCTCCTTTGGGTCCATCAAGTCCTGGAACTCCTaGAGGTCCTGTGTCACCTGGCATTCCATGCTCACC +
Preference number: 6 (lower is better)
Translates to: WFSFGSIKSWNS*RSCVTWHSMLT
Trigger: GGTGAGCATGGAATGCCAGGTGACACAGGACCTCCAGGAGTTCCAGGACTTGATGGACCCAAAGGAGAACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp AGCATTGCCTCTTTCTCCTGGAAAGCCTGGTTTCCCTaGTTTCCCAGGCCTGCCTACGGATGGTTCTCCCTT +
Preference number: 6 (lower is better)
Translates to: SIASFSWKAWFP*FPRPAYGWFSL
Trigger: AAGGGAGAACCATCCGTAGGCAGGCCTGGGAAACCAGGGAAACCAGGCTTTCCAGGAGAAAGAGGCAATGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp TTTTCCACGTGGACCTGGTGGTCCTTTGGGCCCAACTaGTCCTGGATGTCCAATTGGCCCAAGAAATCCAGG +
Preference number: 6 (lower is better)
Translates to: FSTWTWWSFGPN*SWMSNWPKKSR
Trigger: CCTGGATTTCTTGGGCCAATTGGACATCCAGGACCAGTTGGGCCCAAAGGACCACCAGGTCCACGTGGAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp CTTGTTGCCCTTTGTACCAGCTGGTCCTGGAGTTCCTaGTTTCCCATCCTTGCCTGGTTTACCTCTTGGCCC +
Preference number: 6 (lower is better)
Translates to: LVALCTSWSWSS*FPILAWFTSWP
Trigger: GGGCCAAGAGGTAAACCAGGCAAGGATGGGAAACCAGGAACTCCAGGACCAGCTGGTACAAAGGGCAACAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp CTGTCCTTTCAAGCCCTTGTTGCCCTTTGTACCAGCTaGTCCTGGAGTTCCTGGTTTCCCATCCTTGCCTGG +
Preference number: 6 (lower is better)
Translates to: LSFQALVALCTS*SWSSWFPILAW
Trigger: CCAGGCAAGGATGGGAAACCAGGAACTCCAGGACCAGCTGGTACAAAGGGCAACAAGGGCTTGAAAGGACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS GCA 72 bp AGAGGTGTATCCCCTTTGTCCCCTTTAAGTCCTGGATaGCCTTGGTCACCTGGGAATCCTGCAAATCCTGGG +
Preference number: 6 (lower is better)
Translates to: RGVSPLSPLSPG*PWSPGNPANPG
Trigger: CCCAGGATTTGCAGGATTCCCAGGTGACCAAGGGCATCCAGGACTTAAAGGGGACAAAGGGGATACACCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp TTTGTCCCCTTTAAGTCCTGGATGCCCTTGGTCACCTaGGAATCCTGCAAATCCTGGGAGACCTGCACTTCC +
Preference number: 6 (lower is better)
Translates to: FVPFKSWMPLVT*ESCKSWETCTS
Trigger: GGAAGTGCAGGTCTCCCAGGATTTGCAGGATTCCCAGGTGACCAAGGGCATCCAGGACTTAAAGGGGACAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp ATAGCCCATCATTCCAACCTCTCCTTTCTCGCCTGGTaGTCCTGGGAATCCTGGAGCTCCCGGATATCCTTT +
Preference number: 6 (lower is better)
Translates to: IAHHSNLSFLAW*SWESWSSRISF
Trigger: AAAGGATATCCGGGAGCTCCAGGATTCCCAGGACCACCAGGCGAGAAAGGAGAGGTTGGAATGATGGGCTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 72 bp AACCCAGTCCTGGGGACACGGAGGGATAGCAGTAGTTaGACTGTGAACAGCTATGGCCATTGCTGGACCTTC +
Preference number: 6 (lower is better)
Translates to: NPVLGTRRDSSS*TVNSYGHCWTF
Trigger: GAAGGTCCAGCAATGGCCATAGCTGTTCACAGTCAAACTACTGCTATCCCTCCGTGTCCCCAGGACTGGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113457.9
ENSMUST00000152664.2
CDS CAA 90 bp TTTTCCATTGAATCCCCTGTCTTCTCCTTGAGCAGGCTCACCCTTTaGTCCTTTCAAGCCATCAGGACCTGGGAGCCCTGCATAGCCTGG +
Preference number: 6 (lower is better)
Translates to: FSIESPVFSLSRLTL*SFQAIRTWEPCIAW
Trigger: CCAGGCTATGCAGGGCTCCCAGGTCCTGATGGCTTGAAAGGACAAAAGGGTGAGCCTGCTCAAGGAGAAGACAGGGGATTCAATGGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS TCA 72 bp ACGGCCAGGCTTTCCCATTTCCCCAGGACAACCAGGTaGTCCTTTTGTCCCTGGGAAACCTTGATTTCCCTT +
Preference number: 6 (lower is better)
Translates to: TARLSHFPRTTR*SFCPWETLISL
Trigger: AAGGGAAATCAAGGTTTCCCAGGGACAAAAGGATCACCTGGTTGTCCTGGGGAAATGGGAAAGCCTGGCCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS GCA 72 bp GCCCAGGGAGTCCAATATCTCCATTTTCCCCAGCATTaGCTCTTTCTCCTGGAAAGCCTGGTTTCCCTGGTT +
Preference number: 6 (lower is better)
Translates to: AQGVQYLHFPQH*LFLLESLVSLV
Trigger: AACCAGGGAAACCAGGCTTTCCAGGAGAAAGAGGCAATGCTGGGGAAAATGGAGATATTGGACTCCCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS GCA 72 bp TTTAAGCCTGGCAATCCATCCAGACCAGGTGGGCCTTaGTGTCCTTTCAAGCCCTTGTTGCCCTTTGTACCA +
Preference number: 6 (lower is better)
Translates to: FKPGNPSRPGGP*CPFKPLLPFVP
Trigger: TGGTACAAAGGGCAACAAGGGCTTGAAAGGACAGCAAGGCCCACCTGGTCTGGATGGATTGCCAGGCTTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 72 bp AGCCCAGGGAGTCCAATATCTCCATTTTCCCCAGCATaGCCTCTTTCTCCTGGAAAGCCTGGTTTCCCTGGT +
Preference number: 6 (lower is better)
Translates to: SPGSPISPFSPA*PLSPGKPGFPG
Trigger: ACCAGGGAAACCAGGCTTTCCAGGAGAAAGAGGCAATGCTGGGGAAAATGGAGATATTGGACTCCCTGGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS TCA 72 bp AAACCCACTATAGAGTGGCTGTGTTCCTTCAGGGCATaGAGGAATGGCCGTGGTTTGACTGTGTCGGGTGAA +
Preference number: 6 (lower is better)
Translates to: KPTIEWLCSFRA*RNGRGLTVSGE
Trigger: TTCACCCGACACAGTCAAACCACGGCCATTCCTTCATGCCCTGAAGGAACACAGCCACTCTATAGTGGGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113457.9
ENSMUST00000125563.8
ENSMUST00000152664.2
CDS GCA 72 bp ATGTTACAGAATAAGAACGGCATTGTGGTGAATCGCTaGAGGCAGCTGCCCAGAGTACCTAGGTCTTGTCCA +
Preference number: 6 (lower is better)
Translates to: MLQNKNGIVVNR*RQLPRVPRSCP
Trigger: TGGACAAGACCTAGGTACTCTGGGCAGCTGCCTGCAGCGATTCACCACAATGCCGTTCTTATTCTGTAACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113457.9
ENSMUST00000152664.2
CDS GCA 72 bp AAGGCCTGGCATTCCTCTCTCTCCCTTTTCCAGGTATaGGTCATAATATTCTGTTGGACCAGGAAATCCTGG +
Preference number: 6 (lower is better)
Translates to: KAWHSSLSLFQV*VIIFCWTRKSW
Trigger: CCAGGATTTCCTGGTCCAACAGAATATTATGACGCATACCTGGAAAAGGGAGAGAGAGGAATGCCAGGCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp CCTTTCTCTCCCTTGAAGTCCGATTTGTTGTATGGCTaGGTGAGTGTAAAAATCACTGTTCCTGGTGGCCCA +
Preference number: 6 (lower is better)
Translates to: PFSPLKSDLLYG*VSVKITVPGGP
Trigger: TGGGCCACCAGGAACAGTGATTTTTACACTCACCCAGCCATACAACAAATCGGACTTCAAGGGAGAGAAAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp GTATGCGTCATAATATTCTGTTGGACCAGGAAATCCTaGGGGGCCAATGTCTCCTTTCCTTCCCTTAATGCC +
Preference number: 6 (lower is better)
Translates to: VCVIIFCWTRKS*GANVSFPSLNA
Trigger: GGCATTAAGGGAAGGAAAGGAGACATTGGCCCCCCAGGATTTCCTGGTCCAACAGAATATTATGACGCATAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CCA 72 bp AGCAGTAGTTTGACTGTGAACAGCTATGGCCATTGCTaGACCTTCACAGACGGTGCATCTGCTAATATAGGG +
Preference number: 6 (lower is better)
Translates to: SSSLTVNSYGHC*TFTDGASANIG
Trigger: CCCTATATTAGCAGATGCACCGTCTGTGAAGGTCCAGCAATGGCCATAGCTGTTCACAGTCAAACTACTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113457.9
ENSMUST00000152664.2
CDS CCA 72 bp ATCTCCTTTCTCTCCCTTGAAGTCCGATTTGTTGTATaGCTGGGTGAGTGTAAAAATCACTGTTCCTGGTGG +
Preference number: 6 (lower is better)
Translates to: ISFLSLEVRFVV*LGECKNHCSWW
Trigger: CCACCAGGAACAGTGATTTTTACACTCACCCAGCCATACAACAAATCGGACTTCAAGGGAGAGAAAGGAGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9
CDS CAA 72 bp CCCTCATCTCCTTTCTCTCCCTTGAAGTCCGATTTGTaGTATGGCTGGGTGAGTGTAAAAATCACTGTTCCT +
Preference number: 6 (lower is better)
Translates to: PSSPFSPLKSDL*YGWVSVKITVP
Trigger: AGGAACAGTGATTTTTACACTCACCCAGCCATACAACAAATCGGACTTCAAGGGAGAGAAAGGAGATGAGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113457.9