RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CFL1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000056201

Ensembl transcript IDs: ENSMUST00000209469.2, ENSMUST00000237122.2

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AAGGCTCAGGCTTTAGCTGGGGTAACAGTAGGTGGGGCTCCAGACTaGAGTCCTAGAATCCACCTGACCCACCCTGAATGGACTCCAGTC +
Preference number: 1 (lower is better)
Translates to: KAQALAGVTVGGAPD*SPRIHLTHPEWTPV
Trigger: GACTGGAGTCCATTCAGGGTGGGTCAGGTGGATTCTAGGACTTCAGTCTGGAGCCCCACCTACTGTTACCCCAGCTAAAGCCTGAGCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR GCA 90 bp CAACTGCCCTGCCTTGGAACAGTGCACCCCAACTCAAGAAGGAGATaGCGCTTACTAGGGACTGAACTAGAGGTGAAGCACAGGGAAACC +
Preference number: 1 (lower is better)
Translates to: QLPCLGTVHPNSRRR*RLLGTELEVKHRET
Trigger: GGTTTCCCTGTGCTTCACCTCTAGTTCAGTCCCTAGTAAGCGGCATCTCCTTCTTGAGTTGGGGTGCACTGTTCCAAGGCAGGGCAGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR TCA 90 bp TCAGGGTACCTCACTGTCCACTATAAAGGTAAGAAGTTTCAGGTGTaGCACACTCGGAGCCCAACTGCCCTGCCTTGGAACAGTGCACCC +
Preference number: 1 (lower is better)
Translates to: SGYLTVHYKGKKFQV*HTRSPTALPWNSAP
Trigger: GGGTGCACTGTTCCAAGGCAGGGCAGTTGGGCTCCGAGTGTGTCACACCTGAAACTTCTTACCTTTATAGTGGACAGTGAGGTACCCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR GCA 90 bp TCCCAATCTGTTGCTACAGCTCAGAGGTGGAGTGCTTGCCTACCATaGATAAAGCCCTGGGTTCAATGCCCAGCACCCCAGAAAAACAAG +
Preference number: 1 (lower is better)
Translates to: SQSVATAQRWSACLP*IKPWVQCPAPQKNK
Trigger: CTTGTTTTTCTGGGGTGCTGGGCATTGAACCCAGGGCTTTATGCATGGTAGGCAAGCACTCCACCTCTGAGCTGTAGCAACAGATTGGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR GCA 90 bp AACACAAATTCCCAATCTGTTGCTACAGCTCAGAGGTGGAGTGCTTaGCTACCATGCATAAAGCCCTGGGTTCAATGCCCAGCACCCCAG +
Preference number: 1 (lower is better)
Translates to: NTNSQSVATAQRWSA*LPCIKPWVQCPAPQ
Trigger: CTGGGGTGCTGGGCATTGAACCCAGGGCTTTATGCATGGTAGGCAAGCACTCCACCTCTGAGCTGTAGCAACAGATTGGGAATTTGTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR GCA 90 bp CAAGAACACAAATTCCCAATCTGTTGCTACAGCTCAGAGGTGGAGTaGTTGCCTACCATGCATAAAGCCCTGGGTTCAATGCCCAGCACC +
Preference number: 1 (lower is better)
Translates to: QEHKFPICCYSSEVE*LPTMHKALGSMPST
Trigger: GGTGCTGGGCATTGAACCCAGGGCTTTATGCATGGTAGGCAAGCACTCCACCTCTGAGCTGTAGCAACAGATTGGGAATTTGTGTTCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR GCA 90 bp AGGGAGTCAGATTTCATTACAGATGGCTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTTCAGACCTTCGGAAGGAAGAGCAGTCGGG +
Preference number: 1 (lower is better)
Translates to: RESDFITDGCEPPCG*WDLNFRPSEGRAVG
Trigger: CCCGACTGCTCTTCCTTCCGAAGGTCTGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAGCCATCTGTAATGAAATCTGACTCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR TCA 90 bp TCAGACCCTCCAGAAGAGGGAGTCAGATTTCATTACAGATGGCTGTaGGCCACCATGTGGTTGCTGGGATTTGAACTTCAGACCTTCGGA +
Preference number: 1 (lower is better)
Translates to: SDPPEEGVRFHYRWL*ATMWLLGFELQTFG
Trigger: TCCGAAGGTCTGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAGCCATCTGTAATGAAATCTGACTCCCTCTTCTGGAGGGTCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR-3UTR TCA 90 bp GCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCATGCCCTCGGCTCGGTGGGGCTCCAGACTaGAGTCCTAGAATCCACCTG +
Preference number: 2 (lower is better)
Translates to: AVGCSYPLSHLTSPCPRLGGAPD*SPRIHL
Trigger: CAGGTGGATTCTAGGACTTCAGTCTGGAGCCCCACC...GAGCCGAGGGCATGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR-3UTR CCA 90 bp GCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCATGCCCTCGGCTCTATTTAGCCCACATGTaGAAAGGGGCTCAGGGTACC +
Preference number: 2 (lower is better)
Translates to: AVGCSYPLSHLTSPCPRLYLAHM*KGAQGT
Trigger: GGTACCCTGAGCCCCTTTCCACATGTGGGCTAAATA...GAGCCGAGGGCATGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR-3UTR GCA 90 bp CCATGCATAAAGCCCTGGGTTCAATGCCCAGCACCCCAGAAAAACAAGTACTCTCTGGGGCTGTTAAGATaGTCCAGGCAGGGGGCTGGA +
Preference number: 2 (lower is better)
Translates to: PCIKPWVQCPAPQKNKYSLGLLR*SRQGAG
Trigger: TCCAGCCCCCTGCCTGGAGCATCTTAACAGCCCCAG...AGAGTACTTGTTTTTCTGGGGTGCTGGGCATTGAACCCAGGGCTTTATGCATGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR CAA 90 bp GAACACAAATTCCCAATCTGTTGCTACAGCTCAGAGGTGGAGTGCTaGCCTACCATGCATAAAGCCCTGGGTTCAATGCCCAGCACCCCA +
Preference number: 2 (lower is better)
Translates to: EHKFPICCYSSEVEC*PTMHKALGSMPSTP
Trigger: TGGGGTGCTGGGCATTGAACCCAGGGCTTTATGCATGGTAGGCAAGCACTCCACCTCTGAGCTGTAGCAACAGATTGGGAATTTGTGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR-3UTR GCA 90 bp TGGAAAGGGGCTCAGGGTACCTCACTGTCCACTATAAAGGTAAGAAGTTTCAGGAGGAAAGGGGCAGCCTaGAACACCCAAGAGCAGGTC +
Preference number: 2 (lower is better)
Translates to: WKGAQGTSLSTIKVRSFRRKGAA*NTQEQV
Trigger: GACCTGCTCTTGGGTGTTGCAGGCTGCCCCTTTCCT...CCTGAAACTTCTTACCTTTATAGTGGACAGTGAGGTACCCTGAGCCCCTTTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR-3UTR GCA 90 bp AAGAGGGAGTCAGATTTCATTACAGATGGCTGTGAGCCACCATGTGGTTGCTGGCAGAGGTGGAGTGCTTaGCTACCATGCATAAAGCCC +
Preference number: 2 (lower is better)
Translates to: KRESDFITDGCEPPCGCWQRWSA*LPCIKP
Trigger: GGGCTTTATGCATGGTAGGCAAGCACTCCACCTCTG...CCAGCAACCACATGGTGGCTCACAGCCATCTGTAATGAAATCTGACTCCCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR-3UTR TCA 90 bp TGGAAAGGGGCTCAGGGTACCTCACTGTCCACTATAAAGGTAAGAAGTTTCAGGCCGCTTACTAGGGACTaGACTAGAGGTGAAGCACAG +
Preference number: 2 (lower is better)
Translates to: WKGAQGTSLSTIKVRSFRPLTRD*TRGEAQ
Trigger: CTGTGCTTCACCTCTAGTTCAGTCCCTAGTAAGCGG...CCTGAAACTTCTTACCTTTATAGTGGACAGTGAGGTACCCTGAGCCCCTTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR-3UTR CCA 90 bp AAGAGGGAGTCAGATTTCATTACAGATGGCTGTGAGCCACCATGTGGTTGCTGGTTACACCAAACAGAATaGGCCAGCCTTAATGGGGCT +
Preference number: 2 (lower is better)
Translates to: KRESDFITDGCEPPCGCWLHQTE*ASLNGA
Trigger: AGCCCCATTAAGGCTGGCCCATTCTGTTTGGTGTAA...CCAGCAACCACATGGTGGCTCACAGCCATCTGTAATGAAATCTGACTCCCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR-3UTR CCA 90 bp CCATGCATAAAGCCCTGGGTTCAATGCCCAGCACCCCAGAAAAACAAGTACTCTCAACTTTCTCAGACTTaGGGCCAGTTAAGGAAACCA +
Preference number: 2 (lower is better)
Translates to: PCIKPWVQCPAPQKNKYSQLSQT*GQLRKP
Trigger: TGGTTTCCTTAACTGGCCCCAAGTCTGAGAAAGTTG...AGAGTACTTGTTTTTCTGGGGTGCTGGGCATTGAACCCAGGGCTTTATGCATGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR TCA 72 bp CTTCGGAAGGAAGAGCAGTCGGGTGCTCTTACCCACTaGGCCATCTCACCAGCCCATGCCCTCGGCTCCTTT +
Preference number: 3 (lower is better)
Translates to: LRKEEQSGALTH*AISPAHALGSF
Trigger: AAAGGAGCCGAGGGCATGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCTTCCGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR GCA 72 bp GTTGCTACAGCTCAGAGGTGGAGTGCTTGCCTACCATaGATAAAGCCCTGGGTTCAATGCCCAGCACCCCAG +
Preference number: 3 (lower is better)
Translates to: VATAQRWSACLP*IKPWVQCPAPQ
Trigger: CTGGGGTGCTGGGCATTGAACCCAGGGCTTTATGCATGGTAGGCAAGCACTCCACCTCTGAGCTGTAGCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR-3UTR CAA 90 bp CTCCAGAAGAGGGAGTCAGATTTCATTACAGATGGCTGTGAGCCACCATGTGGTCCCAACTGCCCTGCCTaGGAACAGTGCACCCCAACT +
Preference number: 3 (lower is better)
Translates to: LQKRESDFITDGCEPPCGPNCPA*EQCTPT
Trigger: AGTTGGGGTGCACTGTTCCAAGGCAGGGCAGTTGGG...ACCACATGGTGGCTCACAGCCATCTGTAATGAAATCTGACTCCCTCTTCTGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR TCA 72 bp CAGATGGCTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTTCAGACCTTCGGAAGGAAGAGCAGTCGGGT +
Preference number: 3 (lower is better)
Translates to: QMAVSHHVVAGI*TSDLRKEEQSG
Trigger: ACCCGACTGCTCTTCCTTCCGAAGGTCTGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAGCCATCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR GCA 72 bp TCCCAATCTGTTGCTACAGCTCAGAGGTGGAGTGCTTaGCTACCATGCATAAAGCCCTGGGTTCAATGCCCA +
Preference number: 3 (lower is better)
Translates to: SQSVATAQRWSA*LPCIKPWVQCP
Trigger: TGGGCATTGAACCCAGGGCTTTATGCATGGTAGGCAAGCACTCCACCTCTGAGCTGTAGCAACAGATTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR CCA 72 bp AAACAGGACAGCTCCTTCCTGCAACTTTCTCAGACTTaGGGCCAGTTAAGGAAACCAGCTCTCCTGCCCTCA +
Preference number: 3 (lower is better)
Translates to: KQDSSFLQLSQT*GQLRKPALLPS
Trigger: TGAGGGCAGGAGAGCTGGTTTCCTTAACTGGCCCCAAGTCTGAGAAAGTTGCAGGAAGGAGCTGTCCTGTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR CCA 72 bp CAGAGGTGGAGTGCTTGCCTACCATGCATAAAGCCCTaGGTTCAATGCCCAGCACCCCAGAAAAACAAGTAC +
Preference number: 3 (lower is better)
Translates to: QRWSACLPCIKP*VQCPAPQKNKY
Trigger: GTACTTGTTTTTCTGGGGTGCTGGGCATTGAACCCAGGGCTTTATGCATGGTAGGCAAGCACTCCACCTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR TCA 72 bp CTCACTGTCCACTATAAAGGTAAGAAGTTTCAGGTGTaGCACACTCGGAGCCCAACTGCCCTGCCTTGGAAC +
Preference number: 3 (lower is better)
Translates to: LTVHYKGKKFQV*HTRSPTALPWN
Trigger: GTTCCAAGGCAGGGCAGTTGGGCTCCGAGTGTGTCACACCTGAAACTTCTTACCTTTATAGTGGACAGTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR GCA 72 bp AGTGCTTGCCTACCATGCATAAAGCCCTGGGTTCAATaGCCAGCACCCCAGAAAAACAAGTACTCTTCCCGT +
Preference number: 3 (lower is better)
Translates to: SACLPCIKPWVQ*PAPQKNKYSSR
Trigger: ACGGGAAGAGTACTTGTTTTTCTGGGGTGCTGGGCATTGAACCCAGGGCTTTATGCATGGTAGGCAAGCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR-3UTR CAA 90 bp CTCCAGAAGAGGGAGTCAGATTTCATTACAGATGGCTGTGAGCCACCATGTGGTCAAATTCCCAATCTGTaGCTACAGCTCAGAGGTGGA +
Preference number: 3 (lower is better)
Translates to: LQKRESDFITDGCEPPCGQIPNL*LQLRGG
Trigger: TCCACCTCTGAGCTGTAGCAACAGATTGGGAATTTG...ACCACATGGTGGCTCACAGCCATCTGTAATGAAATCTGACTCCCTCTTCTGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR-3UTR CAA 90 bp AAGAGGGAGTCAGATTTCATTACAGATGGCTGTGAGCCACCATGTGGTTGCTGGCCATGCTTCTGGGATTaGCATCACCCTCAGTTCTTT +
Preference number: 3 (lower is better)
Translates to: KRESDFITDGCEPPCGCWPCFWD*HHPQFF
Trigger: AAAGAACTGAGGGTGATGCAAATCCCAGAAGCATGG...CCAGCAACCACATGGTGGCTCACAGCCATCTGTAATGAAATCTGACTCCCTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR TCA 72 bp CCAGAAGAGGGAGTCAGATTTCATTACAGATGGCTGTaGGCCACCATGTGGTTGCTGGGATTTGAACTTCAG +
Preference number: 3 (lower is better)
Translates to: PEEGVRFHYRWL*ATMWLLGFELQ
Trigger: CTGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAGCCATCTGTAATGAAATCTGACTCCCTCTTCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR CCA 72 bp CAGTGTCACCCAAGTAAACTGTATTTAGCCCACATGTaGAAAGGGGCTCAGGGTACCTCACTGTCCACTATA +
Preference number: 3 (lower is better)
Translates to: QCHPSKLYLAHM*KGAQGTSLSTI
Trigger: TATAGTGGACAGTGAGGTACCCTGAGCCCCTTTCCACATGTGGGCTAAATACAGTTTACTTGGGTGACACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR GCA 72 bp GATTTCATTACAGATGGCTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTTCAGACCTTCGGAAGGAAGA +
Preference number: 3 (lower is better)
Translates to: DFITDGCEPPCG*WDLNFRPSEGR
Trigger: TCTTCCTTCCGAAGGTCTGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAGCCATCTGTAATGAAATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR-3UTR CAA 90 bp TCTTACACCAAACAGAATGGGCCAGCCTTAATGGGGCTTTGTAAGAAATCAAAGGCAACTTTCTCAGACTaGGGGCCAGTTAAGGAAACC +
Preference number: 3 (lower is better)
Translates to: SYTKQNGPALMGLCKKSKATFSD*GPVKET
Trigger: GGTTTCCTTAACTGGCCCCAAGTCTGAGAAAGTTGC...CTTTGATTTCTTACAAAGCCCCATTAAGGCTGGCCCATTCTGTTTGGTGTAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR CAA 72 bp TCAGGTGTGACACACTCGGAGCCCAACTGCCCTGCCTaGGAACAGTGCACCCCAACTCAAGAAGGAGATGCC +
Preference number: 4 (lower is better)
Translates to: SGVTHSEPNCPA*EQCTPTQEGDA
Trigger: GGCATCTCCTTCTTGAGTTGGGGTGCACTGTTCCAAGGCAGGGCAGTTGGGCTCCGAGTGTGTCACACCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
CDS-3UTR TCA 90 bp GCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCATGCCCTCGGCTCCACTTCTTCTGGTGTTaGAGACTTGCGAACCTTCAT +
Preference number: 4 (lower is better)
Translates to: AVGCSYPLSHLTSPCPRLHFFWC*RLANLH
Trigger: ATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTG...GAGCCGAGGGCATGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
CDS-3UTR TCA 90 bp CACCCAAGTAAACTGTATTTAGCCCACATGTGGAAAGGGGCTCAGGGTACCTCATGCCCTCCAGGGAAATaGCGGCGCTGCCACCTAGTT +
Preference number: 4 (lower is better)
Translates to: HPSKLYLAHMWKGAQGTSCPPGK*RRCHLV
Trigger: AACTAGGTGGCAGCGCCGTCATTTCCCTGGAGGGCA...TGAGGTACCCTGAGCCCCTTTCCACATGTGGGCTAAATACAGTTTACTTGGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
CDS-3UTR GCA 90 bp CATAAAGCCCTGGGTTCAATGCCCAGCACCCCAGAAAAACAAGTACTCTTCCCGTTTGCTCTTGAGGGGTaGATTCTCGGGGGCCCAGAA +
Preference number: 4 (lower is better)
Translates to: HKALGSMPSTPEKQVLFPFALEG*ILGGPE
Trigger: TTCTGGGCCCCCGAGAATGCACCCCTCAAGAGCAAA...CGGGAAGAGTACTTGTTTTTCTGGGGTGCTGGGCATTGAACCCAGGGCTTTATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR CAA 72 bp TTCCCAATCTGTTGCTACAGCTCAGAGGTGGAGTGCTaGCCTACCATGCATAAAGCCCTGGGTTCAATGCCC +
Preference number: 4 (lower is better)
Translates to: FPICCYSSEVEC*PTMHKALGSMP
Trigger: GGGCATTGAACCCAGGGCTTTATGCATGGTAGGCAAGCACTCCACCTCTGAGCTGTAGCAACAGATTGGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
3UTR CAA 72 bp CCCTCAGTTCTTTCAAGAACACAAATTCCCAATCTGTaGCTACAGCTCAGAGGTGGAGTGCTTGCCTACCAT +
Preference number: 4 (lower is better)
Translates to: PSVLSRTQIPNL*LQLRGGVLAYH
Trigger: ATGGTAGGCAAGCACTCCACCTCTGAGCTGTAGCAACAGATTGGGAATTTGTGTTCTTGAAAGAACTGAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209469.2
CDS TCA 90 bp GCAGATGAGAGGAGGAAGGTAGCAGCTAGCAGGAGACTGCGCCCATaGCTTTTGCAGAAGGAGGGATCCTTACCTGTCAGCTTCTTCTTG +
Preference number: 5 (lower is better)
Translates to: ADERRKVAASRRLRP*LLQKEGSLPVSFFL
Trigger: CAAGAAGAAGCTGACAGGTAAGGATCCCTCCTTCTGCAAAAGTCATGGGCGCAGTCTCCTGCTAGCTGCTACCTTCCTCCTCTCATCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237122.2