Pregenerated sensors for CFDP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031954Ensembl transcript IDs: ENSMUST00000034432.7
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | AAAAAGGGACTTGCTGGAAACATGATGAGGAACACTGGAAGTATTTCACAGACAGAGTGGTGTCGCTGGTaGAGTGACAAGAGCCTGCGG | + |
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Preference number: 4 (lower is better) Translates to: KKGLAGNMMRNTGSISQTEWCRW*SDKSLR Trigger: CCGCAGGCTCTTGTCACTTCACCAGCGACACCACTC...TGTCTGTGAAATACTTCCAGTGTTCCTCATCATGTTTCCAGCAAGTCCCTTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR CCA 90 bp | GGGACTTGCTGGAAACATGATGAGGAACACTGGAAGTATTTCACAGACACTCAGCATCCTCGTCCGATGTaGAGAAGTCTTCGGAGTCGA | + |
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Preference number: 4 (lower is better) Translates to: GTCWKHDEEHWKYFTDTQHPRPM*RSLRSR Trigger: TCGACTCCGAAGACTTCTCCACATCGGACGAGGATG...CTGAGTGTCTGTGAAATACTTCCAGTGTTCCTCATCATGTTTCCAGCAAGTCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR TCA 90 bp | ACTTGCTGGAAACATGATGAGGAACACTGGAAGTATTTCACAGACACTCAGAGGCTTCCTTGCATTCTCTaGCCCAAGGCCTCCTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: TCWKHDEEHWKYFTDTQRLPCIL*PKASFL Trigger: CAAGAAGGAGGCCTTGGGTCAGAGAATGCAAGGAAG...CCTCTGAGTGTCTGTGAAATACTTCCAGTGTTCCTCATCATGTTTCCAGCAAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR TCA 90 bp | CTTGCTGGAAACATGATGAGGAACACTGGAAGTATTTCACAGACACTCAGAGGATGCTCTTTTTATCCCTaGCCCAGCAGGGAGTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: LAGNMMRNTGSISQTLRGCSFYP*PSREWC Trigger: ACACCACTCCCTGCTGGGTCAGGGATAAAAAGAGCA...TCCTCTGAGTGTCTGTGAAATACTTCCAGTGTTCCTCATCATGTTTCCAGCAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR GCA 90 bp | GGGACTTGCTGGAAACATGATGAGGAACACTGGAAGTATTTCACAGACACTCAGCGCTCAATTTCAAACTaGCTGTGGTCCACTCGATCC | + |
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Preference number: 4 (lower is better) Translates to: GTCWKHDEEHWKYFTDTQRSISN*LWSTRS Trigger: GGATCGAGTGGACCACAGGCAGTTTGAAATTGAGCG...CTGAGTGTCTGTGAAATACTTCCAGTGTTCCTCATCATGTTTCCAGCAAGTCCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR CCA 90 bp | CTCAGAGGAGCTCACATTGTCAATAGGATTCAGCTGCTAGGAATCCTTCCCAGATCTTTCCCTCGGTTATaGATGGCCAGTTCTTCACCA | + |
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Preference number: 4 (lower is better) Translates to: LRGAHIVNRIQLLGILPRSFPRL*MASSSP Trigger: TGGTGAAGAACTGGCCATCCATAACCGAGGGAAAGA...TCTGGGAAGGATTCCTAGCAGCTGAATCCTATTGACAATGTGAGCTCCTCTGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR CCA 90 bp | CTTGCTGGAAACATGATGAGGAACACTGGAAGTATTTCACAGACACTCAGAGGATTTCCTTTTCCTGGCTaGAATGCCCTGAGCCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: LAGNMMRNTGSISQTLRGFPFPG*NALSLP Trigger: AGGAAGGCTCAGGGCATTCCAGCCAGGAAAAGGAAA...TCCTCTGAGTGTCTGTGAAATACTTCCAGTGTTCCTCATCATGTTTCCAGCAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR CCA 90 bp | GATGAGGAACACTGGAAGTATTTCACAGACACTCAGAGGAGCTCACATTGTCAATCCCTCGGTTATGGATaGCCAGTTCTTCACCAATCC | + |
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Preference number: 4 (lower is better) Translates to: DEEHWKYFTDTQRSSHCQSLGYG*PVLHQS Trigger: GGATTGGTGAAGAACTGGCCATCCATAACCGAGGGA...TTGACAATGTGAGCTCCTCTGAGTGTCTGTGAAATACTTCCAGTGTTCCTCATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR GCA 90 bp | ACTTGCTGGAAACATGATGAGGAACACTGGAAGTATTTCACAGACACTCAGAGGCCAAGGCCTCCTTCTTaGTCCTCTTCATCTTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: TCWKHDEEHWKYFTDTQRPRPPS*SSSSSS Trigger: TGAAGAAGATGAAGAGGAGCAAGAAGGAGGCCTTGG...CCTCTGAGTGTCTGTGAAATACTTCCAGTGTTCCTCATCATGTTTCCAGCAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR TCA 90 bp | AACATGATGAGGAACACTGGAAGTATTTCACAGACACTCAGAGGAGCTCACATTACCTGGGGCTGCTTTTaGCTTTGGTCCTACATCATT | + |
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Preference number: 4 (lower is better) Translates to: NMMRNTGSISQTLRGAHITWGCF*LWSYII Trigger: AATGATGTAGGACCAAAGTCAAAAGCAGCCCCAGGT...AATGTGAGCTCCTCTGAGTGTCTGTGAAATACTTCCAGTGTTCCTCATCATGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR GCA 90 bp | GAAAAAGGGACTTGCTGGAAACATGATGAGGAACACTGGAAGTATTTCACAGACTTTTCCTGGCTGGAATaGCCTGAGCCTTCCTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: EKGTCWKHDEEHWKYFTDFSWLE*PEPSFF Trigger: AAAGAAGGAAGGCTCAGGGCATTCCAGCCAGGAAAA...GTCTGTGAAATACTTCCAGTGTTCCTCATCATGTTTCCAGCAAGTCCCTTTTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR GCA 90 bp | ACTTGCTGGAAACATGATGAGGAACACTGGAAGTATTTCACAGACACTCAGAGGCTCCAGAGTCTTCCTTaGCATCTTCCTCTTCTTCTA | + |
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Preference number: 4 (lower is better) Translates to: TCWKHDEEHWKYFTDTQRLQSLP*HLPLLL Trigger: TAGAAGAAGAGGAAGATGGCAAGGAAGACTCTGGAG...CCTCTGAGTGTCTGTGAAATACTTCCAGTGTTCCTCATCATGTTTCCAGCAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR GCA 90 bp | GGGACTTGCTGGAAACATGATGAGGAACACTGGAAGTATTTCACAGACACTCAGCTTCATCTTCTTCACTaGTACTACCTCCAGAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: GTCWKHDEEHWKYFTDTQLHLLH*YYLQSL Trigger: AAGACTCTGGAGGTAGTAGCAGTGAAGAAGATGAAG...CTGAGTGTCTGTGAAATACTTCCAGTGTTCCTCATCATGTTTCCAGCAAGTCCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR GCA 90 bp | ACTTGCTGGAAACATGATGAGGAACACTGGAAGTATTTCACAGACACTCAGAGGGAAGTGACAAGAGCCTaGGGTTTTTCTCTCTCTGTT | + |
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Preference number: 4 (lower is better) Translates to: TCWKHDEEHWKYFTDTQREVTRA*GFSLSV Trigger: AACAGAGAGAGAAAAACCGCAGGCTCTTGTCACTTC...CCTCTGAGTGTCTGTGAAATACTTCCAGTGTTCCTCATCATGTTTCCAGCAAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR CCA 90 bp | AACATGATGAGGAACACTGGAAGTATTTCACAGACACTCAGAGGAGCTCACATTTTTGTTTCCTTTTCCTaGCTGGAATGCCCTGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: NMMRNTGSISQTLRGAHIFVSFS*LECPEP Trigger: AGGCTCAGGGCATTCCAGCCAGGAAAAGGAAACAAA...AATGTGAGCTCCTCTGAGTGTCTGTGAAATACTTCCAGTGTTCCTCATCATGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR TCA 90 bp | CATGATGAGGAACACTGGAAGTATTTCACAGACACTCAGAGGAGCTCACATTGTTCATTTTGCTCAGCCTaGGATCTCGCTCAATTTCAA | + |
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Preference number: 4 (lower is better) Translates to: HDEEHWKYFTDTQRSSHCSFCSA*DLAQFQ Trigger: TTGAAATTGAGCGAGATCTCAGGCTGAGCAAAATGA...ACAATGTGAGCTCCTCTGAGTGTCTGTGAAATACTTCCAGTGTTCCTCATCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR CCA 90 bp | CTTGCTGGAAACATGATGAGGAACACTGGAAGTATTTCACAGACACTCAGAGGATCCTTCTTTTCCCTTTaGTTTTCTCAGCCTGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: LAGNMMRNTGSISQTLRGSFFSL*FSQPAL Trigger: AAGAGCAGGCTGAGAAAACCAAAGGGAAAAGAAGGA...TCCTCTGAGTGTCTGTGAAATACTTCCAGTGTTCCTCATCATGTTTCCAGCAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR CCA 90 bp | AAAAAGGGACTTGCTGGAAACATGATGAGGAACACTGGAAGTATTTCACAGACATCTCCCAGTCCAGTTTaGATTTCTCAAGGGTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: KKGLAGNMMRNTGSISQTSPSPV*ISQGCS Trigger: TGAGCACCCTTGAGAAATCCAAACTGGACTGGGAGA...TGTCTGTGAAATACTTCCAGTGTTCCTCATCATGTTTCCAGCAAGTCCCTTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR GCA 90 bp | GATGAGGAACACTGGAAGTATTTCACAGACACTCAGAGGAGCTCACATTGTCAATTTTCTCTCTCTGTTTaGTTGAGGAAAGACTTCGCT | + |
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Preference number: 4 (lower is better) Translates to: DEEHWKYFTDTQRSSHCQFSLSV*LRKDFA Trigger: AGCGAAGTCTTTCCTCAAGCAAACAGAGAGAGAAAA...TTGACAATGTGAGCTCCTCTGAGTGTCTGTGAAATACTTCCAGTGTTCCTCATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR CCA 90 bp | AACATGATGAGGAACACTGGAAGTATTTCACAGACACTCAGAGGAGCTCACATTATTTCAAACTGCCTGTaGTCCACTCGATCCAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: NMMRNTGSISQTLRGAHIISNCL*STRSRK Trigger: TTTTCTGGATCGAGTGGACCACAGGCAGTTTGAAAT...AATGTGAGCTCCTCTGAGTGTCTGTGAAATACTTCCAGTGTTCCTCATCATGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS TCA 90 bp | GAAGCTGGCCCACAACTCATCTTCCTTCTTCTTCCTTGCATTCTCTaGCCCAAGGCCTCCTTCTTGCTCCTCTTCATCTTCTTCACTGCT | + |
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Preference number: 5 (lower is better) Translates to: EAGPQLIFLLLPCIL*PKASFLLLFIFFTA Trigger: AGCAGTGAAGAAGATGAAGAGGAGCAAGAAGGAGGCCTTGGGTCAGAGAATGCAAGGAAGAAGAAGGAAGATGAGTTGTGGGCCAGCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS TCA 90 bp | CTCGGTTATGGATGGCCAGTTCTTCACCAATCCCCTCTTCTTCCTTaGAGCTCTCCCAGTCCAGTTTGGATTTCTCAAGGGTGCTCATCT | + |
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Preference number: 5 (lower is better) Translates to: LGYGWPVLHQSPLLP*SSPSPVWISQGCSS Trigger: AGATGAGCACCCTTGAGAAATCCAAACTGGACTGGGAGAGCTTCAAGGAAGAAGAGGGGATTGGTGAAGAACTGGCCATCCATAACCGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS GCA 90 bp | GTCGCTGGTGAAGTGACAAGAGCCTGCGGTTTTTCTCTCTCTGTTTaGTTGAGGAAAGACTTCGCTTCCTTAGACGCAGCATCTACTTCC | + |
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Preference number: 5 (lower is better) Translates to: VAGEVTRACGFSLSV*LRKDFASLDAASTS Trigger: GGAAGTAGATGCTGCGTCTAAGGAAGCGAAGTCTTTCCTCAAGCAAACAGAGAGAGAAAAACCGCAGGCTCTTGTCACTTCACCAGCGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS CCA 90 bp | TCCAGAAAAGCTTTCCGCTCAATGTACCCTTCTTTCCCTCGGTTATaGATGGCCAGTTCTTCACCAATCCCCTCTTCTTCCTTGAAGCTC | + |
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Preference number: 5 (lower is better) Translates to: SRKAFRSMYPSFPRL*MASSSPIPSSSLKL Trigger: GAGCTTCAAGGAAGAAGAGGGGATTGGTGAAGAACTGGCCATCCATAACCGAGGGAAAGAAGGGTACATTGAGCGGAAAGCTTTTCTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR CAA 90 bp | CTCAGAGGAGCTCACATTGTCAATAGGATTCAGCTGCTAGGAATCCTTCCCAGACTTCCTTCTTCTTCCTaGCATTCTCTGACCCAAGGC | + |
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Preference number: 5 (lower is better) Translates to: LRGAHIVNRIQLLGILPRLPSSS*HSLTQG Trigger: GCCTTGGGTCAGAGAATGCAAGGAAGAAGAAGGAAG...TCTGGGAAGGATTCCTAGCAGCTGAATCCTATTGACAATGTGAGCTCCTCTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR CAA 90 bp | CTCAGAGGAGCTCACATTGTCAATAGGATTCAGCTGCTAGGAATCCTTCCCAGATCTCTCTCTGTTTGCTaGAGGAAAGACTTCGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: LRGAHIVNRIQLLGILPRSLSVC*RKDFAS Trigger: GGAAGCGAAGTCTTTCCTCAAGCAAACAGAGAGAGA...TCTGGGAAGGATTCCTAGCAGCTGAATCCTATTGACAATGTGAGCTCCTCTGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS GCA 90 bp | CAAGGTTTCATTTTGCTCAGCCTGAGATCTCGCTCAATTTCAAACTaGCTGTGGTCCACTCGATCCAGAAAAGCTTTCCGCTCAATGTAC | + |
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Preference number: 5 (lower is better) Translates to: QGFILLSLRSRSISN*LWSTRSRKAFRSMY Trigger: GTACATTGAGCGGAAAGCTTTTCTGGATCGAGTGGACCACAGGCAGTTTGAAATTGAGCGAGATCTCAGGCTGAGCAAAATGAAACCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS CCA 90 bp | TTCATTTTGCTCAGCCTGAGATCTCGCTCAATTTCAAACTGCCTGTaGTCCACTCGATCCAGAAAAGCTTTCCGCTCAATGTACCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: FILLSLRSRSISNCL*STRSRKAFRSMYPS Trigger: AGAAGGGTACATTGAGCGGAAAGCTTTTCTGGATCGAGTGGACCACAGGCAGTTTGAAATTGAGCGAGATCTCAGGCTGAGCAAAATGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR CAA 90 bp | GAAAAAGGGACTTGCTGGAAACATGATGAGGAACACTGGAAGTATTTCACAGACCTCTCCCAGTCCAGTTaGGATTTCTCAAGGGTGCTC | + |
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Preference number: 5 (lower is better) Translates to: EKGTCWKHDEEHWKYFTDLSQSS*DFSRVL Trigger: GAGCACCCTTGAGAAATCCAAACTGGACTGGGAGAG...GTCTGTGAAATACTTCCAGTGTTCCTCATCATGTTTCCAGCAAGTCCCTTTTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR CAA 90 bp | CTTGCTGGAAACATGATGAGGAACACTGGAAGTATTTCACAGACACTCAGAGGAAACCTGGGGCTGCTTTaGACTTTGGTCCTACATCAT | + |
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Preference number: 5 (lower is better) Translates to: LAGNMMRNTGSISQTLRGNLGLL*TLVLHH Trigger: ATGATGTAGGACCAAAGTCAAAAGCAGCCCCAGGTT...TCCTCTGAGTGTCTGTGAAATACTTCCAGTGTTCCTCATCATGTTTCCAGCAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS TCA 90 bp | TTCTTCGCCAGCGAAGTCAAACACCTTGGTAATCTTCACCTTTTCTaGTTCTCTAGGCTTATCCAGCTCATCTGCTTTGACCAACGGTTT | + |
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Preference number: 5 (lower is better) Translates to: FFASEVKHLGNLHLF*FSRLIQLICFDQRF Trigger: AAACCGTTGGTCAAAGCAGATGAGCTGGATAAGCCTAGAGAATCAGAAAAGGTGAAGATTACCAAGGTGTTTGACTTCGCTGGCGAAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS-3UTR CAA 90 bp | CTTGCTGGAAACATGATGAGGAACACTGGAAGTATTTCACAGACACTCAGAGGATTTTTCTCTCTCTGTTaGCTTGAGGAAAGACTTCGC | + |
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Preference number: 5 (lower is better) Translates to: LAGNMMRNTGSISQTLRGFFSLC*LEERLR Trigger: GCGAAGTCTTTCCTCAAGCAAACAGAGAGAGAAAAA...TCCTCTGAGTGTCTGTGAAATACTTCCAGTGTTCCTCATCATGTTTCCAGCAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS TCA 72 bp | TCCCTGACCCAGCAGGGAGTGGTGTCGCTGGTGAAGTaGCAAGAGCCTGCGGTTTTTCTCTCTCTGTTTGCT | + |
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Preference number: 6 (lower is better) Translates to: SLTQQGVVSLVK*QEPAVFLSLFA Trigger: AGCAAACAGAGAGAGAAAAACCGCAGGCTCTTGTCACTTCACCAGCGACACCACTCCCTGCTGGGTCAGGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS GCA 72 bp | GCAGGGAGTGGTGTCGCTGGTGAAGTGACAAGAGCCTaGGGTTTTTCTCTCTCTGTTTGCTTGAGGAAAGAC | + |
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Preference number: 6 (lower is better) Translates to: AGSGVAGEVTRA*GFSLSVCLRKD Trigger: GTCTTTCCTCAAGCAAACAGAGAGAGAAAAACCGCAGGCTCTTGTCACTTCACCAGCGACACCACTCCCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS CCA 72 bp | GCTTTCCGCTCAATGTACCCTTCTTTCCCTCGGTTATaGATGGCCAGTTCTTCACCAATCCCCTCTTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: AFRSMYPSFPRL*MASSSPIPSSS Trigger: GGAAGAAGAGGGGATTGGTGAAGAACTGGCCATCCATAACCGAGGGAAAGAAGGGTACATTGAGCGGAAAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS CAA 72 bp | TGGCTCCAATTTTCCCTAAGAGGCTGCTCATACCACTaGCTCTTTTTATCCCTGACCCAGCAGGGAGTGGTG | + |
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Preference number: 6 (lower is better) Translates to: WLQFSLRGCSYH*LFLSLTQQGVV Trigger: CACCACTCCCTGCTGGGTCAGGGATAAAAAGAGCAAGTGGTATGAGCAGCCTCTTAGGGAAAATTGGAGCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS GCA 72 bp | CAAGGCCTCCTTCTTGCTCCTCTTCATCTTCTTCACTaGTACTACCTCCAGAGTCTTCCTTGCCATCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: QGLLLAPLHLLH*YYLQSLPCHLP Trigger: AGGAAGATGGCAAGGAAGACTCTGGAGGTAGTAGCAGTGAAGAAGATGAAGAGGAGCAAGAAGGAGGCCTTG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS CCA 72 bp | CTCAGCCTGAGATCTCGCTCAATTTCAAACTGCCTGTaGTCCACTCGATCCAGAAAAGCTTTCCGCTCAATG | + |
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Preference number: 6 (lower is better) Translates to: LSLRSRSISNCL*STRSRKAFRSM Trigger: CATTGAGCGGAAAGCTTTTCTGGATCGAGTGGACCACAGGCAGTTTGAAATTGAGCGAGATCTCAGGCTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS GCA 72 bp | GAAGTGACAAGAGCCTGCGGTTTTTCTCTCTCTGTTTaGTTGAGGAAAGACTTCGCTTCCTTAGACGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: EVTRACGFSLSV*LRKDFASLDAA Trigger: TGCTGCGTCTAAGGAAGCGAAGTCTTTCCTCAAGCAAACAGAGAGAGAAAAACCGCAGGCTCTTGTCACTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS GCA 72 bp | ATTTTGCTCAGCCTGAGATCTCGCTCAATTTCAAACTaGCTGTGGTCCACTCGATCCAGAAAAGCTTTCCGC | + |
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Preference number: 6 (lower is better) Translates to: ILLSLRSRSISN*LWSTRSRKAFR Trigger: GCGGAAAGCTTTTCTGGATCGAGTGGACCACAGGCAGTTTGAAATTGAGCGAGATCTCAGGCTGAGCAAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS CAA 90 bp | TCCCAGTCCAGTTTGGATTTCTCAAGGGTGCTCATCTTCTGTTTTTaGGCTCCAATTTTCCCTAAGAGGCTGCTCATACCACTTGCTCTT | + |
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Preference number: 6 (lower is better) Translates to: SQSSLDFSRVLIFCF*APIFPKRLLIPLAL Trigger: AAGAGCAAGTGGTATGAGCAGCCTCTTAGGGAAAATTGGAGCCAAAAAACAGAAGATGAGCACCCTTGAGAAATCCAAACTGGACTGGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS CAA 90 bp | ACTTCCTTAGTCACCCTTACTTCTTCGCCAGCGAAGTCAAACACCTaGGTAATCTTCACCTTTTCTGATTCTCTAGGCTTATCCAGCTCA | + |
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Preference number: 6 (lower is better) Translates to: TSLVTLTSSPAKSNT*VIFTFSDSLGLSSS Trigger: TGAGCTGGATAAGCCTAGAGAATCAGAAAAGGTGAAGATTACCAAGGTGTTTGACTTCGCTGGCGAAGAAGTAAGGGTGACTAAGGAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS CAA 72 bp | GTCACCCTTACTTCTTCGCCAGCGAAGTCAAACACCTaGGTAATCTTCACCTTTTCTGATTCTCTAGGCTTA | + |
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Preference number: 6 (lower is better) Translates to: VTLTSSPAKSNT*VIFTFSDSLGL Trigger: TAAGCCTAGAGAATCAGAAAAGGTGAAGATTACCAAGGTGTTTGACTTCGCTGGCGAAGAAGTAAGGGTGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS CAA 90 bp | ATCTTCACCTTTTCTGATTCTCTAGGCTTATCCAGCTCATCTGCTTaGACCAACGGTTTATTCGAACTAATCTCTTCAGTCTCCTCGGCT | + |
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Preference number: 6 (lower is better) Translates to: IFTFSDSLGLSSSSA*TNGLFELISSVSSA Trigger: AGCCGAGGAGACTGAAGAGATTAGTTCGAATAAACCGTTGGTCAAAGCAGATGAGCTGGATAAGCCTAGAGAATCAGAAAAGGTGAAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS TCA 72 bp | AGCGAAGTCAAACACCTTGGTAATCTTCACCTTTTCTaGTTCTCTAGGCTTATCCAGCTCATCTGCTTTGAC | + |
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Preference number: 6 (lower is better) Translates to: SEVKHLGNLHLF*FSRLIQLICFD Trigger: GTCAAAGCAGATGAGCTGGATAAGCCTAGAGAATCAGAAAAGGTGAAGATTACCAAGGTGTTTGACTTCGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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| CDS CAA 72 bp | TTTTCTGATTCTCTAGGCTTATCCAGCTCATCTGCTTaGACCAACGGTTTATTCGAACTAATCTCTTCAGTC | + |
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Preference number: 6 (lower is better) Translates to: FSDSLGLSSSSA*TNGLFELISSV Trigger: GACTGAAGAGATTAGTTCGAATAAACCGTTGGTCAAAGCAGATGAGCTGGATAAGCCTAGAGAATCAGAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034432.7 |
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