RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CERKL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000075256

Ensembl transcript IDs: ENSMUST00000143974.2, ENSMUST00000156731.8

Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 72 bp TTAGTTTCTGATGTCTCTGTCCTGACTGGATCCGGATaGAAAACCAAGATATCAGTTCAGGCAAGTCAGTTC +
Preference number: 3 (lower is better)
Translates to: LVSDVSVLTGSG*KTKISVQASQF
Trigger: GAACTGACTTGCCTGAACTGATATCTTGGTTTTTCATCCGGATCCAGTCAGGACAGAGACATCAGAAACTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156731.8
CDS-3UTR TCA 90 bp GGCCCCACCATGATTGTATTAGTTTCTGATGTCTCTGTCCTGACTGGATCCGGAGGGTGCAGCCTAATGTaGACCTCTGATGCAGCTTCC +
Preference number: 4 (lower is better)
Translates to: GPTMIVLVSDVSVLTGSGGCSLM*TSDAAS
Trigger: GGAAGCTGCATCAGAGGTTCACATTAGGCTGCACCC...TCCGGATCCAGTCAGGACAGAGACATCAGAAACTAATACAATCATGGTGGGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156731.8
CDS-3UTR CCA 90 bp ACCAAGATATCAGTTCAGGCAAGTCAGTTCAGCATGTCTGATGATGAAATTCACTCTGAAGCAGTTGTATaGTTTCCACCCTCCTCCTGT +
Preference number: 4 (lower is better)
Translates to: TKISVQASQFSMSDDEIHSEAVV*FPPSSC
Trigger: ACAGGAGGAGGGTGGAAACCATACAACTGCTTCAGA...GTGAATTTCATCATCAGACATGCTGAACTGACTTGCCTGAACTGATATCTTGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156731.8
CDS-3UTR GCA 90 bp ACCAAGATATCAGTTCAGGCAAGTCAGTTCAGCATGTCTGATGATGAAATTCACGTGGGCTGTATCCATTaGTATTACTCTTTGGGTGAA +
Preference number: 4 (lower is better)
Translates to: TKISVQASQFSMSDDEIHVGCIH*YYSLGE
Trigger: TTCACCCAAAGAGTAATAGCAATGGATACAGCCCAC...GTGAATTTCATCATCAGACATGCTGAACTGACTTGCCTGAACTGATATCTTGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156731.8
CDS-3UTR TCA 90 bp TTCAGGCAAGTCAGTTCAGCATGTCTGATGATGAAATTCACCAAGGCTGTATATCCACAAAGGGAAAATTaGACTGATTCTTTACACTGG +
Preference number: 4 (lower is better)
Translates to: FRQVSSACLMMKFTKAVYPQREN*TDSLHW
Trigger: CCAGTGTAAAGAATCAGTTCAATTTTCCCTTTGTGG...ATATACAGCCTTGGTGAATTTCATCATCAGACATGCTGAACTGACTTGCCTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156731.8
CDS-3UTR CCA 90 bp AGTCAGTTCAGCATGTCTGATGATGAAATTCACCAAGGCTGTATATTCTGTAATACTGATTCTTTACACTaGAGTGTCTTTTCAGGTGCT +
Preference number: 4 (lower is better)
Translates to: SQFSMSDDEIHQGCIFCNTDSLH*SVFSGA
Trigger: AGCACCTGAAAAGACACTCCAGTGTAAAGAATCAGT...ATTACAGAATATACAGCCTTGGTGAATTTCATCATCAGACATGCTGAACTGACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156731.8
CDS GCA 90 bp TCAGCAGATCATGCCTGGTGCCACCAGCCGGGAGCTCGGGCTGGATaGGTCGCCACCGCAGGGCCCGCTCGCCCAACGCCACATCGCAGC +
Preference number: 5 (lower is better)
Translates to: SADHAWCHQPGARAG*VATAGPARPTPHRS
Trigger: GCTGCGATGTGGCGTTGGGCGAGCGGGCCCTGCGGTGGCGACGCATCCAGCCCGAGCTCCCGGCTGGTGGCACCAGGCATGATCTGCTGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS CCA 90 bp TTGCTCAGCAGATCATGCCTGGTGCCACCAGCCGGGAGCTCGGGCTaGATGCGTCGCCACCGCAGGGCCCGCTCGCCCAACGCCACATCG +
Preference number: 5 (lower is better)
Translates to: LLSRSCLVPPAGSSG*MRRHRRARSPNATS
Trigger: CGATGTGGCGTTGGGCGAGCGGGCCCTGCGGTGGCGACGCATCCAGCCCGAGCTCCCGGCTGGTGGCACCAGGCATGATCTGCTGAGCAA
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS GCA 90 bp GATCTCGAAGATGCCACGCAGCAAAACCCGCTCGGGTTCAGCAGCTaGCTTTGGGTTCTCCGGAGGCGCCTCCTCCAGGGCGCCCACCCG +
Preference number: 5 (lower is better)
Translates to: DLEDATQQNPLGFSS*LWVLRRRLLQGAHP
Trigger: CGGGTGGGCGCCCTGGAGGAGGCGCCTCCGGAGAACCCAAAGGCAGCTGCTGAACCCGAGCGGGTTTTGCTGCGTGGCATCTTCGAGATC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS TCA 90 bp GAGTCGGGATGCAGTCCATCTCCACTCCCGCGTTCTTCTGAGCTCTaGGGAGCAAAGCGCGGGCGGCCTCACTCGCAGATCCATCTCCAC +
Preference number: 5 (lower is better)
Translates to: ESGCSPSPLPRSSEL*GAKRGRPHSQIHLH
Trigger: GTGGAGATGGATCTGCGAGTGAGGCCGCCCGCGCTTTGCTCCTCAGAGCTCAGAAGAACGCGGGAGTGGAGATGGACTGCATCCCGACTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS GCA 90 bp GCTCGCCCAACGCCACATCGCAGCTTTCCCTCCGGATCTCGAAGATaGCACGCAGCAAAACCCGCTCGGGTTCAGCAGCTGCCTTTGGGT +
Preference number: 5 (lower is better)
Translates to: ARPTPHRSFPSGSRR*HAAKPARVQQLPLG
Trigger: ACCCAAAGGCAGCTGCTGAACCCGAGCGGGTTTTGCTGCGTGGCATCTTCGAGATCCGGAGGGAAAGCTGCGATGTGGCGTTGGGCGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS GCA 90 bp CTTCAAGTTCTAGGGACTCTTCTTTGCTCAGCAGATCATGCCTGGTaGCACCAGCCGGGAGCTCGGGCTGGATGCGTCGCCACCGCAGGG +
Preference number: 5 (lower is better)
Translates to: LQVLGTLLCSADHAW*HQPGARAGCVATAG
Trigger: CCCTGCGGTGGCGACGCATCCAGCCCGAGCTCCCGGCTGGTGGCACCAGGCATGATCTGCTGAGCAAAGAAGAGTCCCTAGAACTTGAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS GCA 90 bp TCAGCTTCACTGAGAAGATGTCTTCAAGTTCTAGGGACTCTTCTTTaGTCAGCAGATCATGCCTGGTGCCACCAGCCGGGAGCTCGGGCT +
Preference number: 5 (lower is better)
Translates to: SASLRRCLQVLGTLL*SADHAWCHQPGARA
Trigger: AGCCCGAGCTCCCGGCTGGTGGCACCAGGCATGATCTGCTGAGCAAAGAAGAGTCCCTAGAACTTGAAGACATCTTCTCAGTGAAGCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS TCA 90 bp CCAGCGTGGAGTCCTTTAGTTTGTTCCGTTGCTCCTTCAAGCAGATaGAAAGCGTTATGCCCAGCAGTGTGTCTCTGCCTGGATGCTTGG +
Preference number: 5 (lower is better)
Translates to: PAWSPLVCSVAPSSR*KALCPAVCLCLDAW
Trigger: CCAAGCATCCAGGCAGAGACACACTGCTGGGCATAACGCTTTTCATCTGCTTGAAGGAGCAACGGAACAAACTAAAGGACTCCACGCTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS GCA 90 bp GTGAGGAGTTCCAAAGAGAGAATGTGCCAGTGCGTTAGTAGATCCTaGTGGAATGAAGCCAAGAGGAAGCTCTGCTCCAACGAGAGTCGG +
Preference number: 5 (lower is better)
Translates to: VRSSKERMCQCVSRS*WNEAKRKLCSNESR
Trigger: CCGACTCTCGTTGGAGCAGAGCTTCCTCTTGGCTTCATTCCAGCAGGATCTACTAACGCACTGGCACATTCTCTCTTTGGAACTCCTCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS GCA 90 bp GGTTGCAGTCACCACGTGAGGAGTTCCAAAGAGAGAATGTGCCAGTaGGTTAGTAGATCCTGCTGGAATGAAGCCAAGAGGAAGCTCTGC +
Preference number: 5 (lower is better)
Translates to: GCSHHVRSSKERMCQ*VSRSCWNEAKRKLC
Trigger: GCAGAGCTTCCTCTTGGCTTCATTCCAGCAGGATCTACTAACGCACTGGCACATTCTCTCTTTGGAACTCCTCACGTGGTGACTGCAACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS CCA 90 bp AGGAGTTCCAAAGAGAGAATGTGCCAGTGCGTTAGTAGATCCTGCTaGAATGAAGCCAAGAGGAAGCTCTGCTCCAACGAGAGTCGGGAT +
Preference number: 5 (lower is better)
Translates to: RSSKERMCQCVSRSC*NEAKRKLCSNESRD
Trigger: ATCCCGACTCTCGTTGGAGCAGAGCTTCCTCTTGGCTTCATTCCAGCAGGATCTACTAACGCACTGGCACATTCTCTCTTTGGAACTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS TCA 90 bp GGCTTAAGTTTGGCCAGTGCTTTGATTATAGCAAAGTCTCTTCGCTaGCTGGGGGACATCCATCGGTATTTCTCTGCCAGAGCCAAGGTC +
Preference number: 5 (lower is better)
Translates to: GLSLASALIIAKSLR*LGDIHRYFSARAKV
Trigger: GACCTTGGCTCTGGCAGAGAAATACCGATGGATGTCCCCCAGTCAGCGAAGAGACTTTGCTATAATCAAAGCACTGGCCAAACTTAAGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS GCA 90 bp ATGCATGGTTGCAGTCACCACGTGAGGAGTTCCAAAGAGAGAATGTaGCAGTGCGTTAGTAGATCCTGCTGGAATGAAGCCAAGAGGAAG +
Preference number: 5 (lower is better)
Translates to: MHGCSHHVRSSKERM*QCVSRSCWNEAKRK
Trigger: CTTCCTCTTGGCTTCATTCCAGCAGGATCTACTAACGCACTGGCACATTCTCTCTTTGGAACTCCTCACGTGGTGACTGCAACCATGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS CCA 90 bp TCACCATCTACATTCCACGGAAACCCGTGTTCTGAAGCAGTTGTATaGTTTCCACCCTCCTCCTGTGGGCTGTATCCATTGCTATTACTC +
Preference number: 5 (lower is better)
Translates to: SPSTFHGNPCSEAVV*FPPSSCGLYPLLLL
Trigger: GAGTAATAGCAATGGATACAGCCCACAGGAGGAGGGTGGAAACCATACAACTGCTTCAGAACACGGGTTTCCGTGGAATGTAGATGGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000143974.2
ENSMUST00000156731.8
CDS TCA 90 bp GCCATGATGCTGATGTTCAAGAACTGCCCCTGGATGGTTTGCCAGTaGCCACCACAGTCAGATTCTGCAGATCTCTGTGATTTTCTTTCT +
Preference number: 5 (lower is better)
Translates to: AMMLMFKNCPWMVCQ*PPQSDSADLCDFLS
Trigger: AGAAAGAAAATCACAGAGATCTGCAGAATCTGACTGTGGTGGTCACTGGCAAACCATCCAGGGGCAGTTCTTGAACATCAGCATCATGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS GCA 90 bp CCATCAAATCCTCGGAGTTCACATTCGTCAAGCAGAGACAGGGCATaGCCTTCATATTCTGTTATTGTCACATCAGTCTCTATGCCCGCA +
Preference number: 5 (lower is better)
Translates to: PSNPRSSHSSSRDRA*PSYSVIVTSVSMPA
Trigger: TGCGGGCATAGAGACTGATGTGACAATAACAGAATATGAAGGGCATGCCCTGTCTCTGCTTGACGAATGTGAACTCCGAGGATTTGATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS GCA 90 bp CTGAAGTTAATAAGATCCAGCGTGGAGTCCTTTAGTTTGTTCCGTTaGTCCTTCAAGCAGATGAAAAGCGTTATGCCCAGCAGTGTGTCT +
Preference number: 5 (lower is better)
Translates to: LKLIRSSVESFSLFR*SFKQMKSVMPSSVS
Trigger: AGACACACTGCTGGGCATAACGCTTTTCATCTGCTTGAAGGAGCAACGGAACAAACTAAAGGACTCCACGCTGGATCTTATTAACTTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS-3UTR CAA 90 bp ACCAAGATATCAGTTCAGGCAAGTCAGTTCAGCATGTCTGATGATGAAATTCACCGTGTTCTGAAGCAGTaGTATGGTTTCCACCCTCCT +
Preference number: 5 (lower is better)
Translates to: TKISVQASQFSMSDDEIHRVLKQ*YGFHPP
Trigger: AGGAGGGTGGAAACCATACAACTGCTTCAGAACACG...GTGAATTTCATCATCAGACATGCTGAACTGACTTGCCTGAACTGATATCTTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156731.8
CDS CCA 90 bp AAACCATCCAAGATTTTCTTGAACTGTCTAAACCATATGTCACAGTaGTCTTCACTGAAGTTAATAAGATCCAGCGTGGAGTCCTTTAGT +
Preference number: 5 (lower is better)
Translates to: KPSKIFLNCLNHMSQ*SSLKLIRSSVESFS
Trigger: ACTAAAGGACTCCACGCTGGATCTTATTAACTTCAGTGAAGACCACTGTGACATATGGTTTAGACAGTTCAAGAAAATCTTGGATGGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS GCA 72 bp CATGCCTGGTGCCACCAGCCGGGAGCTCGGGCTGGATaGGTCGCCACCGCAGGGCCCGCTCGCCCAACGCCA +
Preference number: 6 (lower is better)
Translates to: HAWCHQPGARAG*VATAGPARPTP
Trigger: TGGCGTTGGGCGAGCGGGCCCTGCGGTGGCGACGCATCCAGCCCGAGCTCCCGGCTGGTGGCACCAGGCATG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS CCA 72 bp AGATCATGCCTGGTGCCACCAGCCGGGAGCTCGGGCTaGATGCGTCGCCACCGCAGGGCCCGCTCGCCCAAC +
Preference number: 6 (lower is better)
Translates to: RSCLVPPAGSSG*MRRHRRARSPN
Trigger: GTTGGGCGAGCGGGCCCTGCGGTGGCGACGCATCCAGCCCGAGCTCCCGGCTGGTGGCACCAGGCATGATCT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS CCA 72 bp ACGCAGCAAAACCCGCTCGGGTTCAGCAGCTGCCTTTaGGTTCTCCGGAGGCGCCTCCTCCAGGGCGCCCAC +
Preference number: 6 (lower is better)
Translates to: TQQNPLGFSSCL*VLRRRLLQGAH
Trigger: GTGGGCGCCCTGGAGGAGGCGCCTCCGGAGAACCCAAAGGCAGCTGCTGAACCCGAGCGGGTTTTGCTGCGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS CAA 72 bp CACGCAGCAAAACCCGCTCGGGTTCAGCAGCTGCCTTaGGGTTCTCCGGAGGCGCCTCCTCCAGGGCGCCCA +
Preference number: 6 (lower is better)
Translates to: HAAKPARVQQLP*GSPEAPPPGRP
Trigger: TGGGCGCCCTGGAGGAGGCGCCTCCGGAGAACCCAAAGGCAGCTGCTGAACCCGAGCGGGTTTTGCTGCGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS TCA 72 bp TGCAGTCCATCTCCACTCCCGCGTTCTTCTGAGCTCTaGGGAGCAAAGCGCGGGCGGCCTCACTCGCAGATC +
Preference number: 6 (lower is better)
Translates to: CSPSPLPRSSEL*GAKRGRPHSQI
Trigger: GATCTGCGAGTGAGGCCGCCCGCGCTTTGCTCCTCAGAGCTCAGAAGAACGCGGGAGTGGAGATGGACTGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS GCA 72 bp ACGCCACATCGCAGCTTTCCCTCCGGATCTCGAAGATaGCACGCAGCAAAACCCGCTCGGGTTCAGCAGCTG +
Preference number: 6 (lower is better)
Translates to: TPHRSFPSGSRR*HAAKPARVQQL
Trigger: CAGCTGCTGAACCCGAGCGGGTTTTGCTGCGTGGCATCTTCGAGATCCGGAGGGAAAGCTGCGATGTGGCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS GCA 72 bp AGCCAAGAGGAAGCTCTGCTCCAACGAGAGTCGGGATaGAGTCCATCTCCACTCCCGCGTTCTTCTGAGCTC +
Preference number: 6 (lower is better)
Translates to: SQEEALLQRESG*SPSPLPRSSEL
Trigger: GAGCTCAGAAGAACGCGGGAGTGGAGATGGACTGCATCCCGACTCTCGTTGGAGCAGAGCTTCCTCTTGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS CCA 72 bp GCGTTATGCCCAGCAGTGTGTCTCTGCCTGGATGCTTaGCCCAGCAACGCCGCTTCAGCTTCACTGAGAAGA +
Preference number: 6 (lower is better)
Translates to: ALCPAVCLCLDA*PSNAASASLRR
Trigger: TCTTCTCAGTGAAGCTGAAGCGGCGTTGCTGGGCCAAGCATCCAGGCAGAGACACACTGCTGGGCATAACGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS CAA 72 bp AGCGTTATGCCCAGCAGTGTGTCTCTGCCTGGATGCTaGGCCCAGCAACGCCGCTTCAGCTTCACTGAGAAG +
Preference number: 6 (lower is better)
Translates to: SVMPSSVSLPGC*AQQRRFSFTEK
Trigger: CTTCTCAGTGAAGCTGAAGCGGCGTTGCTGGGCCAAGCATCCAGGCAGAGACACACTGCTGGGCATAACGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS GCA 72 bp AAAAGCGTTATGCCCAGCAGTGTGTCTCTGCCTGGATaGTTGGCCCAGCAACGCCGCTTCAGCTTCACTGAG +
Preference number: 6 (lower is better)
Translates to: KSVMPSSVSLPG*LAQQRRFSFTE
Trigger: CTCAGTGAAGCTGAAGCGGCGTTGCTGGGCCAAGCATCCAGGCAGAGACACACTGCTGGGCATAACGCTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS CCA 72 bp GATGAAAAGCGTTATGCCCAGCAGTGTGTCTCTGCCTaGATGCTTGGCCCAGCAACGCCGCTTCAGCTTCAC +
Preference number: 6 (lower is better)
Translates to: DEKRYAQQCVSA*MLGPATPLQLH
Trigger: GTGAAGCTGAAGCGGCGTTGCTGGGCCAAGCATCCAGGCAGAGACACACTGCTGGGCATAACGCTTTTCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS GCA 72 bp CTGAGAAGATGTCTTCAAGTTCTAGGGACTCTTCTTTaGTCAGCAGATCATGCCTGGTGCCACCAGCCGGGA +
Preference number: 6 (lower is better)
Translates to: LRRCLQVLGTLL*SADHAWCHQPG
Trigger: TCCCGGCTGGTGGCACCAGGCATGATCTGCTGAGCAAAGAAGAGTCCCTAGAACTTGAAGACATCTTCTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS GCA 72 bp CACCACGTGAGGAGTTCCAAAGAGAGAATGTGCCAGTaGGTTAGTAGATCCTGCTGGAATGAAGCCAAGAGG +
Preference number: 6 (lower is better)
Translates to: HHVRSSKERMCQ*VSRSCWNEAKR
Trigger: CCTCTTGGCTTCATTCCAGCAGGATCTACTAACGCACTGGCACATTCTCTCTTTGGAACTCCTCACGTGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS GCA 72 bp TGCAGTCACCACGTGAGGAGTTCCAAAGAGAGAATGTaGCAGTGCGTTAGTAGATCCTGCTGGAATGAAGCC +
Preference number: 6 (lower is better)
Translates to: CSHHVRSSKERM*QCVSRSCWNEA
Trigger: GGCTTCATTCCAGCAGGATCTACTAACGCACTGGCACATTCTCTCTTTGGAACTCCTCACGTGGTGACTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS CCA 72 bp ACATTCCACGGAAACCCGTGTTCTGAAGCAGTTGTATaGTTTCCACCCTCCTCCTGTGGGCTGTATCCATTG +
Preference number: 6 (lower is better)
Translates to: TFHGNPCSEAVV*FPPSSCGLYPL
Trigger: CAATGGATACAGCCCACAGGAGGAGGGTGGAAACCATACAACTGCTTCAGAACACGGGTTTCCGTGGAATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000143974.2
ENSMUST00000156731.8
CDS CAA 72 bp CATCTACATTCCACGGAAACCCGTGTTCTGAAGCAGTaGTATGGTTTCCACCCTCCTCCTGTGGGCTGTATC +
Preference number: 6 (lower is better)
Translates to: HLHSTETRVLKQ*YGFHPPPVGCI
Trigger: GATACAGCCCACAGGAGGAGGGTGGAAACCATACAACTGCTTCAGAACACGGGTTTCCGTGGAATGTAGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000143974.2
ENSMUST00000156731.8
CDS CAA 90 bp CACATTCGTCAAGCAGAGACAGGGCATGCCCTTCATATTCTGTTATaGTCACATCAGTCTCTATGCCCGCAAGCTTCAGCAGAGGCTCCA +
Preference number: 6 (lower is better)
Translates to: HIRQAETGHALHILL*SHQSLCPQASAEAP
Trigger: TGGAGCCTCTGCTGAAGCTTGCGGGCATAGAGACTGATGTGACAATAACAGAATATGAAGGGCATGCCCTGTCTCTGCTTGACGAATGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS TCA 72 bp CTGATGTTCAAGAACTGCCCCTGGATGGTTTGCCAGTaGCCACCACAGTCAGATTCTGCAGATCTCTGTGAT +
Preference number: 6 (lower is better)
Translates to: LMFKNCPWMVCQ*PPQSDSADLCD
Trigger: ATCACAGAGATCTGCAGAATCTGACTGTGGTGGTCACTGGCAAACCATCCAGGGGCAGTTCTTGAACATCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS CAA 72 bp CATGATGCTGATGTTCAAGAACTGCCCCTGGATGGTTaGCCAGTGACCACCACAGTCAGATTCTGCAGATCT +
Preference number: 6 (lower is better)
Translates to: HDADVQELPLDG*PVTTTVRFCRS
Trigger: AGATCTGCAGAATCTGACTGTGGTGGTCACTGGCAAACCATCCAGGGGCAGTTCTTGAACATCAGCATCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS TCA 72 bp AGTCCTTTAGTTTGTTCCGTTGCTCCTTCAAGCAGATaGAAAGCGTTATGCCCAGCAGTGTGTCTCTGCCTG +
Preference number: 6 (lower is better)
Translates to: SPLVCSVAPSSR*KALCPAVCLCL
Trigger: CAGGCAGAGACACACTGCTGGGCATAACGCTTTTCATCTGCTTGAAGGAGCAACGGAACAAACTAAAGGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS TCA 72 bp TTGGCCAGTGCTTTGATTATAGCAAAGTCTCTTCGCTaGCTGGGGGACATCCATCGGTATTTCTCTGCCAGA +
Preference number: 6 (lower is better)
Translates to: LASALIIAKSLR*LGDIHRYFSAR
Trigger: TCTGGCAGAGAAATACCGATGGATGTCCCCCAGTCAGCGAAGAGACTTTGCTATAATCAAAGCACTGGCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS CAA 72 bp CAAGCAGAGACAGGGCATGCCCTTCATATTCTGTTATaGTCACATCAGTCTCTATGCCCGCAAGCTTCAGCA +
Preference number: 6 (lower is better)
Translates to: QAETGHALHILL*SHQSLCPQASA
Trigger: TGCTGAAGCTTGCGGGCATAGAGACTGATGTGACAATAACAGAATATGAAGGGCATGCCCTGTCTCTGCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS CAA 90 bp TTAAGTCACCATCTACATTCCACGGAAACCCGTGTTCTGAAGCAGTaGTATGGTTTCCACCCTCCTCCTGTGGGCTGTATCCATTGCTAT +
Preference number: 6 (lower is better)
Translates to: LSHHLHSTETRVLKQ*YGFHPPPVGCIHCY
Trigger: ATAGCAATGGATACAGCCCACAGGAGGAGGGTGGAAACCATACAACTGCTTCAGAACACGGGTTTCCGTGGAATGTAGATGGTGACTTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000143974.2
ENSMUST00000156731.8
CDS GCA 72 bp ATAAGATCCAGCGTGGAGTCCTTTAGTTTGTTCCGTTaGTCCTTCAAGCAGATGAAAAGCGTTATGCCCAGC +
Preference number: 6 (lower is better)
Translates to: IRSSVESFSLFR*SFKQMKSVMPS
Trigger: GCTGGGCATAACGCTTTTCATCTGCTTGAAGGAGCAACGGAACAAACTAAAGGACTCCACGCTGGATCTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS GCA 72 bp CCTCGGAGTTCACATTCGTCAAGCAGAGACAGGGCATaGCCTTCATATTCTGTTATTGTCACATCAGTCTCT +
Preference number: 6 (lower is better)
Translates to: PRSSHSSSRDRA*PSYSVIVTSVS
Trigger: AGAGACTGATGTGACAATAACAGAATATGAAGGGCATGCCCTGTCTCTGCTTGACGAATGTGAACTCCGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS CAA 90 bp TGGTCTTCACTGAAGTTAATAAGATCCAGCGTGGAGTCCTTTAGTTaGTTCCGTTGCTCCTTCAAGCAGATGAAAAGCGTTATGCCCAGC +
Preference number: 6 (lower is better)
Translates to: WSSLKLIRSSVESFS*FRCSFKQMKSVMPS
Trigger: GCTGGGCATAACGCTTTTCATCTGCTTGAAGGAGCAACGGAACAAACTAAAGGACTCCACGCTGGATCTTATTAACTTCAGTGAAGACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS CAA 72 bp GCCTTGGGCCTGCTTGTGAAACCATCCAAGATTTTCTaGAACTGTCTAAACCATATGTCACAGTGGTCTTCA +
Preference number: 6 (lower is better)
Translates to: ALGLLVKPSKIF*NCLNHMSQWSS
Trigger: TGAAGACCACTGTGACATATGGTTTAGACAGTTCAAGAAAATCTTGGATGGTTTCACAAGCAGGCCCAAGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS CAA 72 bp CTGAAGTTAATAAGATCCAGCGTGGAGTCCTTTAGTTaGTTCCGTTGCTCCTTCAAGCAGATGAAAAGCGTT +
Preference number: 6 (lower is better)
Translates to: LKLIRSSVESFS*FRCSFKQMKSV
Trigger: AACGCTTTTCATCTGCTTGAAGGAGCAACGGAACAAACTAAAGGACTCCACGCTGGATCTTATTAACTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS CAA 90 bp ATCTTGAGAGCCTTGGGCCTGCTTGTGAAACCATCCAAGATTTTCTaGAACTGTCTAAACCATATGTCACAGTGGTCTTCACTGAAGTTA +
Preference number: 6 (lower is better)
Translates to: ILRALGLLVKPSKIF*NCLNHMSQWSSLKL
Trigger: TAACTTCAGTGAAGACCACTGTGACATATGGTTTAGACAGTTCAAGAAAATCTTGGATGGTTTCACAAGCAGGCCCAAGGCTCTCAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2
CDS CAA 72 bp AGTAAAAATGATATTTTGCAGTCCTCTGGCTTAAGTTaGGCCAGTGCTTTGATTATAGCAAAGTCTCTTCGC +
Preference number: 6 (lower is better)
Translates to: SKNDILQSSGLS*ASALIIAKSLR
Trigger: GCGAAGAGACTTTGCTATAATCAAAGCACTGGCCAAACTTAAGCCAGAGGACTGCAAAATATCATTTTTACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143974.2