RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CEP97 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022604

Ensembl transcript IDs: ENSMUST00000023270.14, ENSMUST00000117468.8, ENSMUST00000118500.8, ENSMUST00000121129.8, ENSMUST00000121703.3, ENSMUST00000122280.8

Found 260 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ATGGCCGGGCACATGCTGACCATTCTCCAGGCTCAGACTTTTAAATaGCAGCACGCACACATAAGGCACGCGCGCGCACACACACACACA +
Preference number: 1 (lower is better)
Translates to: MAGHMLTILQAQTFK*QHAHIRHARAHTHT
Trigger: TGTGTGTGTGTGTGCGCGCGCGTGCCTTATGTGTGCGTGCTGGCATTTAAAAGTCTGAGCCTGGAGAATGGTCAGCATGTGCCCGGCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR GCA 90 bp TCTGCCTGTATCTGCCTCGTCGCACAGGCTGAGACTAAAGGCATGTaGCAGTCTTGCCTGCCTATGTGGTACAAGTTTATGCCTCTGCAG +
Preference number: 1 (lower is better)
Translates to: SACICLVAQAETKGM*QSCLPMWYKFMPLQ
Trigger: CTGCAGAGGCATAAACTTGTACCACATAGGCAGGCAAGACTGGCACATGCCTTTAGTCTCAGCCTGTGCGACGAGGCAGATACAGGCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR GCA 90 bp GTAGGTGTTCTGCCTACATGTATGTTGGTGTACCCATCATGTGTGTaGCTGGTGCCTGTGGAGGTCAGAAGAGGGAATTACACGTCCTGG +
Preference number: 1 (lower is better)
Translates to: VGVLPTCMLVYPSCV*LVPVEVRRGNYTSW
Trigger: CCAGGACGTGTAATTCCCTCTTCTGACCTCCACAGGCACCAGGCACACACATGATGGGTACACCAACATACATGTAGGCAGAACACCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
3UTR TCA 90 bp AGGCAAACACAATCTCTGAGTTCTAGGCCAGCCTGGTCTACAGAGTaGGTTCCAGGACAACCAGGGCTTTTTAGACAGACCCTGTCTCAA +
Preference number: 1 (lower is better)
Translates to: RQTQSLSSRPAWSTE*VPGQPGLFRQTLSQ
Trigger: TTGAGACAGGGTCTGTCTAAAAAGCCCTGGTTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTAGAACTCAGAGATTGTGTTTGCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR GCA 90 bp CAACCTTACACAGGCTGGTTATCATCCCTGGGTTGCTGTTTCCTCTaGACAATGAAACAGTCAGTCGCTGCCATAAGGCCAGCATCTCTT +
Preference number: 1 (lower is better)
Translates to: QPYTGWLSSLGCCFL*TMKQSVAAIRPASL
Trigger: AAGAGATGCTGGCCTTATGGCAGCGACTGACTGTTTCATTGTGCAGAGGAAACAGCAACCCAGGGATGATAACCAGCCTGTGTAAGGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR TCA 90 bp GCCTGCCTATGTGGTACAAGTTTATGCCTCTGCAGTAACTCGAAGTaGCAAGTCCTCCATAATGCGAGAATGTATCTGAGCCAAAGCAGC +
Preference number: 1 (lower is better)
Translates to: ACLCGTSLCLCSNSK*QVLHNARMYLSQSS
Trigger: GCTGCTTTGGCTCAGATACATTCTCGCATTATGGAGGACTTGTCACTTCGAGTTACTGCAGAGGCATAAACTTGTACCACATAGGCAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR CCA 90 bp AACATGTTTCCAGTTTACTGCTGGCTACCGCAACCTTACACAGGCTaGTTATCATCCCTGGGTTGCTGTTTCCTCTGCACAATGAAACAG +
Preference number: 1 (lower is better)
Translates to: NMFPVYCWLPQPYTG*LSSLGCCFLCTMKQ
Trigger: CTGTTTCATTGTGCAGAGGAAACAGCAACCCAGGGATGATAACCAGCCTGTGTAAGGTTGCGGTAGCCAGCAGTAAACTGGAAACATGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR CCA 90 bp CTACATGTATGTTGGTGTACCCATCATGTGTGTGCCTGGTGCCTGTaGAGGTCAGAAGAGGGAATTACACGTCCTGGAACAAAGATTACA +
Preference number: 1 (lower is better)
Translates to: LHVCWCTHHVCAWCL*RSEEGITRPGTKIT
Trigger: TGTAATCTTTGTTCCAGGACGTGTAATTCCCTCTTCTGACCTCCACAGGCACCAGGCACACACATGATGGGTACACCAACATACATGTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
3UTR TCA 90 bp AGTCCTCACCCTAGCCGTGCCTTACATATTCCATCCCTTACCATGTaGCTAACAAGAGCCAAGTTCTCCTACTTAAATCACCAAAACTAC +
Preference number: 1 (lower is better)
Translates to: SPHPSRALHIPSLTM*LTRAKFSYLNHQNY
Trigger: GTAGTTTTGGTGATTTAAGTAGGAGAACTTGGCTCTTGTTAGTCACATGGTAAGGGATGGAATATGTAAGGCACGGCTAGGGTGAGGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR CCA 90 bp TACACGTCCTGGAACAAAGATTACAGATATTTGTTAGCCACAATATaGTACTCAAATCAAACCCAGGTCCTCTGGAACAGCAGCCAGTGC +
Preference number: 1 (lower is better)
Translates to: YTSWNKDYRYLLATI*YSNQTQVLWNSSQC
Trigger: GCACTGGCTGCTGTTCCAGAGGACCTGGGTTTGATTTGAGTACCATATTGTGGCTAACAAATATCTGTAATCTTTGTTCCAGGACGTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
3UTR TCA 90 bp GGGGGTCAGTTTCTCTCCAGGACTATGAGGCCCACCTTGTTTACATaGCGCTTAACTGTAATATGGCACAATAGACTTTATCACCAAAAT +
Preference number: 1 (lower is better)
Translates to: GGQFLSRTMRPTLFT*RLTVIWHNRLYHQN
Trigger: ATTTTGGTGATAAAGTCTATTGTGCCATATTACAGTTAAGCGTCATGTAAACAAGGTGGGCCTCATAGTCCTGGAGAGAAACTGACCCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR TCA 90 bp TTTCTGAAATTAATGTGCCGTGAAACAGTTTTGGTGCTACCTCAGTaGGATGTTTTTCTTTACCTGTGGGCAGCAAATGAGGCACTTAAC +
Preference number: 1 (lower is better)
Translates to: FLKLMCRETVLVLPQ*DVFLYLWAANEALN
Trigger: GTTAAGTGCCTCATTTGCTGCCCACAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAAAACTGTTTCACGGCACATTAATTTCAGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR CCA 90 bp GAGCTGTTCCTCTCAGCAAGTACCACATGGTCCTCAACTCTATTCTaGAAGGACCAGAACTTTTGTTTTTATATACTTTCAATTAAAGGG +
Preference number: 1 (lower is better)
Translates to: ELFLSASTTWSSTLF*KDQNFCFYILSIKG
Trigger: CCCTTTAATTGAAAGTATATAAAAACAAAAGTTCTGGTCCTTCCAGAATAGAGTTGAGGACCATGTGGTACTTGCTGAGAGGAACAGCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR CCA 90 bp AATCAAATTATCTTTAAACTCTTCTTGCCGACACTAATGATAATCTaGAACACGGGGCTGCAATGTTGTAAAGTGGTACCGTGCTTTGTC +
Preference number: 1 (lower is better)
Translates to: NQIIFKLFLPTLMII*NTGLQCCKVVPCFV
Trigger: GACAAAGCACGGTACCACTTTACAACATTGCAGCCCCGTGTTCCAGATTATCATTAGTGTCGGCAAGAAGAGTTTAAAGATAATTTGATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR TCA 90 bp GAATATACATTAAACAACCGTGTAACTGAGCCTCGTATTTCTTTATaGATGGAAACTAATCCAATGACTGCTTTCCCCTTCCCACTTCAG +
Preference number: 1 (lower is better)
Translates to: EYTLNNRVTEPRISL*METNPMTAFPFPLQ
Trigger: CTGAAGTGGGAAGGGGAAAGCAGTCATTGGATTAGTTTCCATTCATAAAGAAATACGAGGCTCAGTTACACGGTTGTTTAATGTATATTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR TCA 90 bp TGGGAGTCAGAGGCAAGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGCAGGTTCAAGGGAGCTaGCACCCACCTCTGGCTTCC +
Preference number: 2 (lower is better)
Translates to: WESEASRFLSSRPAWSTKQVQGS*HPPLAS
Trigger: GGAAGCCAGAGGTGGGTGTCAGCTCCCTTGAACCTG...CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCTTGCCTCTGACTCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR GCA 90 bp GTGTGCCTGGTGCCTGTGGAGGTCAGAAGAGGGAATTACACGTCCTGGAACAAACATGTGTGTGCCTGGTaGCTGTGGAGGTCAGAAGAG +
Preference number: 2 (lower is better)
Translates to: VCLVPVEVRRGNYTSWNKHVCAW*LWRSEE
Trigger: CTCTTCTGACCTCCACAGGCACCAGGCACACACATG...TTTGTTCCAGGACGTGTAATTCCCTCTTCTGACCTCCACAGGCACCAGGCACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
3UTR-3UTR CCA 90 bp TGTGTGTGCCTGGTGCCTGTGGAGGTCAGAAGAGGGAATTACACGTCCTGGAACCATCATGTGTGTGCCTaGTGCCTGTGGAGGTCAGAA +
Preference number: 2 (lower is better)
Translates to: CVCLVPVEVRRGNYTSWNHHVCA*CLWRSE
Trigger: TTCTGACCTCCACAGGCACCAGGCACACACATGATG...GTTCCAGGACGTGTAATTCCCTCTTCTGACCTCCACAGGCACCAGGCACACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
3UTR-3UTR TCA 90 bp AAGAAGCGCCTCGGCCTAGAAAGATGGGGGTCAGTTTCTCTCCAGGACTATGAGGGCAAACACAATCTCTaGGTTCTAGGCCAGCCTGGT +
Preference number: 2 (lower is better)
Translates to: KKRLGLERWGSVSLQDYEGKHNL*VLGQPG
Trigger: ACCAGGCTGGCCTAGAACTCAGAGATTGTGTTTGCC...CTCATAGTCCTGGAGAGAAACTGACCCCCATCTTTCTAGGCCGAGGCGCTTCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR GCA 90 bp GTGTTCTGCCTACATGTATGTTGGTGTACCCATCATGTGTGTGCCTGGTGCCTGCATGTGTGTGCCTGGTaGCTGTGGAGGTCAGAAGAG +
Preference number: 2 (lower is better)
Translates to: VFCLHVCWCTHHVCAWCLHVCAW*LWRSEE
Trigger: CTCTTCTGACCTCCACAGGCACCAGGCACACACATG...CAGGCACCAGGCACACACATGATGGGTACACCAACATACATGTAGGCAGAACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
3UTR CAA 90 bp CTGCTGGCTACCGCAACCTTACACAGGCTGGTTATCATCCCTGGGTaGCTGTTTCCTCTGCACAATGAAACAGTCAGTCGCTGCCATAAG +
Preference number: 2 (lower is better)
Translates to: LLATATLHRLVIIPG*LFPLHNETVSRCHK
Trigger: CTTATGGCAGCGACTGACTGTTTCATTGTGCAGAGGAAACAGCAACCCAGGGATGATAACCAGCCTGTGTAAGGTTGCGGTAGCCAGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR TCA 90 bp GCCAGGAGTTCAAGACCAACCCTAGACAACATAATGAGACCCTCACCTCAAAAAGATCTGGGAGTTAGGTaGGCAGCTCAATGGCCGGGC +
Preference number: 2 (lower is better)
Translates to: ARSSRPTLDNIMRPSPQKDLGVR*AAQWPG
Trigger: GCCCGGCCATTGAGCTGCTCACCTAACTCCCAGATC...TTTTTGAGGTGAGGGTCTCATTATGTTGTCTAGGGTTGGTCTTGAACTCCTGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR GCA 90 bp AAGAAGCGCCTCGGCCTAGAAAGATGGGGGTCAGTTTCTCTCCAGGACTATGAGGAGACTAAAGGCATGTaGCAGTCTTGCCTGCCTATG +
Preference number: 2 (lower is better)
Translates to: KKRLGLERWGSVSLQDYEETKGM*QSCLPM
Trigger: CATAGGCAGGCAAGACTGGCACATGCCTTTAGTCTC...CTCATAGTCCTGGAGAGAAACTGACCCCCATCTTTCTAGGCCGAGGCGCTTCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR GCA 90 bp CTCAAATCAAACCCAGGTCCTCTGGAACAGCAGCCAGTGCTCTTAACCTTTGAGTACCCATCATGTGTGTaGCTGGTGCCTGTGGAGGTC +
Preference number: 2 (lower is better)
Translates to: LKSNPGPLEQQPVLLTFEYPSCV*LVPVEV
Trigger: GACCTCCACAGGCACCAGGCACACACATGATGGGTA...CTCAAAGGTTAAGAGCACTGGCTGCTGTTCCAGAGGACCTGGGTTTGATTTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
3UTR-3UTR GCA 90 bp GGTACTCAAATCAAACCCAGGTCCTCTGGAACAGCAGCCAGTGCTCTTAACCTTTACCCATCATGTGTGTaGCTGGTGCCTGTGGAGGTC +
Preference number: 2 (lower is better)
Translates to: GTQIKPRSSGTAASALNLYPSCV*LVPVEV
Trigger: GACCTCCACAGGCACCAGGCACACACATGATGGGTA...AAGGTTAAGAGCACTGGCTGCTGTTCCAGAGGACCTGGGTTTGATTTGAGTACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
3UTR-3UTR TCA 90 bp AAGAAGCGCCTCGGCCTAGAAAGATGGGGGTCAGTTTCTCTCCAGGACTATGAGCACACACACACACTGTaGAGTGTAGCTTTGGCTCTT +
Preference number: 2 (lower is better)
Translates to: KKRLGLERWGSVSLQDYEHTHTL*SVALAL
Trigger: AAGAGCCAAAGCTACACTTCACAGTGTGTGTGTGTG...CTCATAGTCCTGGAGAGAAACTGACCCCCATCTTTCTAGGCCGAGGCGCTTCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR GCA 90 bp AAGTGCTGTGATTACAAGTGTGTATCGCTGCTGGGCTGTGATGCTGCATGCCTTGGCATGTGCCAGTCTTaGCTGCCTATGTGGTACAAG +
Preference number: 2 (lower is better)
Translates to: KCCDYKCVSLLGCDAACLGMCQS*LPMWYK
Trigger: CTTGTACCACATAGGCAGGCAAGACTGGCACATGCC...AAGGCATGCAGCATCACAGCCCAGCAGCGATACACACTTGTAATCACAGCACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR TCA 90 bp AAGGTCACGAGTGAAATAAGGACTGAGACACAGCTCCATGGGGCATGCACAGGGCAGCATGGTTCCAAGTaGCTAACTCTATGTCTCCTT +
Preference number: 2 (lower is better)
Translates to: KVTSEIRTETQLHGACTGQHGSK*LTLCLL
Trigger: AAGGAGACATAGAGTTAGTCACTTGGAACCATGCTG...CCCTGTGCATGCCCCATGGAGCTGTGTCTCAGTCCTTATTTCACTCGTGACCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR TCA 90 bp GTGTTCTGCCTACATGTATGTTGGTGTACCCATCATGTGTGTGCCTGGTGCCTGAGTGCTCTTAACCTTTaGGCCATTTCTCCATCCTCC +
Preference number: 2 (lower is better)
Translates to: VFCLHVCWCTHHVCAWCLSALNL*AISPSS
Trigger: GGAGGATGGAGAAATGGCTCAAAGGTTAAGAGCACT...CAGGCACCAGGCACACACATGATGGGTACACCAACATACATGTAGGCAGAACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
3UTR-3UTR CCA 90 bp AAGAAGCGCCTCGGCCTAGAAAGATGGGGGTCAGTTTCTCTCCAGGACTATGAGGCCAAGGAGACTGCCTaGGAAATTTCACTTTTCCAT +
Preference number: 2 (lower is better)
Translates to: KKRLGLERWGSVSLQDYEAKETA*EISLFH
Trigger: ATGGAAAAGTGAAATTTCCCAGGCAGTCTCCTTGGC...CTCATAGTCCTGGAGAGAAACTGACCCCCATCTTTCTAGGCCGAGGCGCTTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR TCA 90 bp TGGGAGTCAGAGGCAAGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTTGGTGCTACCTCAGTaGGATGTTTTTCTTTACCTG +
Preference number: 2 (lower is better)
Translates to: WESEASRFLSSRPAWSTKLVLPQ*DVFLYL
Trigger: CAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAA...CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCTTGCCTCTGACTCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR GCA 90 bp GCCAGGAGTTCAAGACCAACCCTAGACAACATAATGAGACCCTCACCTCAAAAAGGAGCTGCCTGTTTCTaGTTCCCAAGCACTGGGATT +
Preference number: 2 (lower is better)
Translates to: ARSSRPTLDNIMRPSPQKGAACF*FPSTGI
Trigger: AATCCCAGTGCTTGGGAAGCAGAAACAGGCAGCTCC...TTTTTGAGGTGAGGGTCTCATTATGTTGTCTAGGGTTGGTCTTGAACTCCTGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR TCA 90 bp TGGGAGTCAGAGGCAAGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGCCAAAGCAGCACAGCTaGACAAAAATCTCTTATCAA +
Preference number: 2 (lower is better)
Translates to: WESEASRFLSSRPAWSTKPKQHS*TKISYQ
Trigger: TTGATAAGAGATTTTTGTTCAGCTGTGCTGCTTTGG...CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCTTGCCTCTGACTCCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR CCA 90 bp TGGGAGTCAGAGGCAAGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTCTTCCCCAAAGTATTaGCACATAAATGTCAACAGC +
Preference number: 2 (lower is better)
Translates to: WESEASRFLSSRPAWSTKSSPKY*HINVNS
Trigger: GCTGTTGACATTTATGTGCCAATACTTTGGGGAAGA...CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCTTGCCTCTGACTCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR CCA 90 bp GCCAGGAGTTCAAGACCAACCCTAGACAACATAATGAGACCCTCACCTCAAAAAGCTGGTTATCATCCCTaGGTTGCTGTTTCCTCTGCA +
Preference number: 2 (lower is better)
Translates to: ARSSRPTLDNIMRPSPQKAGYHP*VAVSSA
Trigger: TGCAGAGGAAACAGCAACCCAGGGATGATAACCAGC...TTTTTGAGGTGAGGGTCTCATTATGTTGTCTAGGGTTGGTCTTGAACTCCTGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR TCA 90 bp GCCAGGAGTTCAAGACCAACCCTAGACAACATAATGAGACCCTCACCTCAAAAATGGAAACTAATCCAATaGCTGCTTTCCCCTTCCCAC +
Preference number: 2 (lower is better)
Translates to: ARSSRPTLDNIMRPSPQKWKLIQ*LLSPSH
Trigger: GTGGGAAGGGGAAAGCAGTCATTGGATTAGTTTCCA...TTTTTGAGGTGAGGGTCTCATTATGTTGTCTAGGGTTGGTCTTGAACTCCTGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR GCA 90 bp GCCAGGAGTTCAAGACCAACCCTAGACAACATAATGAGACCCTCACCTCAAAAAATAGTCAAGATTCTCTaGAGCTCGAAGCAGGCGACT +
Preference number: 2 (lower is better)
Translates to: ARSSRPTLDNIMRPSPQKIVKIL*SSKQAT
Trigger: AGTCGCCTGCTTCGAGCTGCAGAGAATCTTGACTAT...TTTTTGAGGTGAGGGTCTCATTATGTTGTCTAGGGTTGGTCTTGAACTCCTGGC
47% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR GCA 90 bp CTGTTTTTCCTGTTTAAAATGCAGCAACTTACTCATTCCTGTAAAGATGGACAGCTGGGATTAAAGGCATaGGCCACCAAGCCCAGCTGG +
Preference number: 2 (lower is better)
Translates to: LFFLFKMQQLTHSCKDGQLGLKA*ATKPSW
Trigger: CCAGCTGGGCTTGGTGGCGCATGCCTTTAATCCCAG...CTGTCCATCTTTACAGGAATGAGTAAGTTGCTGCATTTTAAACAGGAAAAACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR GCA 90 bp TGGGAGTCAGAGGCAAGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTTTCTGAAATTAATGTaGCGTGAAACAGTTTTGGTG +
Preference number: 2 (lower is better)
Translates to: WESEASRFLSSRPAWSTKFLKLM*RETVLV
Trigger: CACCAAAACTGTTTCACGGCACATTAATTTCAGAAA...CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCTTGCCTCTGACTCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR GCA 90 bp GCCAGGAGTTCAAGACCAACCCTAGACAACATAATGAGACCCTCACCTCAAAAAGGTTGCTGTTTCCTCTaGACAATGAAACAGTCAGTC +
Preference number: 2 (lower is better)
Translates to: ARSSRPTLDNIMRPSPQKGCCFL*TMKQSV
Trigger: GACTGACTGTTTCATTGTGCAGAGGAAACAGCAACC...TTTTTGAGGTGAGGGTCTCATTATGTTGTCTAGGGTTGGTCTTGAACTCCTGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR CCA 90 bp TGGGAGTCAGAGGCAAGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGATTGTCCTTCGAATATaGCACTTTTCAGAGATTAGA +
Preference number: 2 (lower is better)
Translates to: WESEASRFLSSRPAWSTKIVLRI*HFSEIR
Trigger: TCTAATCTCTGAAAAGTGCCATATTCGAAGGACAAT...CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCTTGCCTCTGACTCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR CCA 90 bp AAGAAGCGCCTCGGCCTAGAAAGATGGGGGTCAGTTTCTCTCCAGGACTATGAGAGTTTTCCTACATTCTaGCATATTGCATTTTCACCT +
Preference number: 2 (lower is better)
Translates to: KKRLGLERWGSVSLQDYESFPTF*HIAFSP
Trigger: AGGTGAAAATGCAATATGCCAGAATGTAGGAAAACT...CTCATAGTCCTGGAGAGAAACTGACCCCCATCTTTCTAGGCCGAGGCGCTTCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR CCA 90 bp GATGTAGGGAAAATAGAGCTTCAGACTCCACTTCTAAGATTTGAAGGGTCTATCCATCATGTGTGTGCCTaGTGCCTGTGGAGGTCAGAA +
Preference number: 2 (lower is better)
Translates to: DVGKIELQTPLLRFEGSIHHVCA*CLWRSE
Trigger: TTCTGACCTCCACAGGCACCAGGCACACACATGATG...GATAGACCCTTCAAATCTTAGAAGTGGAGTCTGAAGCTCTATTTTCCCTACATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
3UTR-3UTR GCA 90 bp AAGTGCTGTGATTACAAGTGTGTATCGCTGCTGGGCTGTGATGCTGCATGCCTTAATCACCAAAACTACTaGAAGGAACTGTTCCTGAAA +
Preference number: 2 (lower is better)
Translates to: KCCDYKCVSLLGCDAACLNHQNY*KELFLK
Trigger: TTTCAGGAACAGTTCCTTGCAGTAGTTTTGGTGATT...AAGGCATGCAGCATCACAGCCCAGCAGCGATACACACTTGTAATCACAGCACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR CCA 90 bp AAGTGCTGTGATTACAAGTGTGTATCGCTGCTGGGCTGTGATGCTGCATGCCTTCTTGTCAAAGGACTCTaGATTTCTGAGAATGAAATG +
Preference number: 2 (lower is better)
Translates to: KCCDYKCVSLLGCDAACLLVKGL*ISENEM
Trigger: CATTTCATTCTCAGAAATCCAGAGTCCTTTGACAAG...AAGGCATGCAGCATCACAGCCCAGCAGCGATACACACTTGTAATCACAGCACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR TCA 90 bp GCCAGGAGTTCAAGACCAACCCTAGACAACATAATGAGACCCTCACCTCAAAAAAACAATAAGTTCTGCTaGCAGTGTCTATCAGATGAA +
Preference number: 2 (lower is better)
Translates to: ARSSRPTLDNIMRPSPQKNNKFC*QCLSDE
Trigger: TTCATCTGATAGACACTGTCAGCAGAACTTATTGTT...TTTTTGAGGTGAGGGTCTCATTATGTTGTCTAGGGTTGGTCTTGAACTCCTGGC
42% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR GCA 90 bp GCCAGGAGTTCAAGACCAACCCTAGACAACATAATGAGACCCTCACCTCAAAAATCCGGCTGCTATTATTaGTTCATACAAACAACTTTA +
Preference number: 2 (lower is better)
Translates to: ARSSRPTLDNIMRPSPQKSGCYY*FIQTTL
Trigger: TAAAGTTGTTTGTATGAAGCAATAATAGCAGCCGGA...TTTTTGAGGTGAGGGTCTCATTATGTTGTCTAGGGTTGGTCTTGAACTCCTGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR CCA 90 bp CTGTTTTTCCTGTTTAAAATGCAGCAACTTACTCATTCCTGTAAAGATGGACAGTTGTCCTTGAACTCATaGGAGCTGCCTGTTTCTGCT +
Preference number: 2 (lower is better)
Translates to: LFFLFKMQQLTHSCKDGQLSLNS*ELPVSA
Trigger: AGCAGAAACAGGCAGCTCCCATGAGTTCAAGGACAA...CTGTCCATCTTTACAGGAATGAGTAAGTTGCTGCATTTTAAACAGGAAAAACAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR CAA 90 bp TCTCCTTTCTCCATAGCAAAGAGAAAGATACTTGCCCGAGCAAGCTaGATTTTAATCCTGATGGAATACCTTACTTCAAAACTGATCCAC +
Preference number: 2 (lower is better)
Translates to: SPFSIAKRKILARAS*ILILMEYLTSKLIH
Trigger: GTGGATCAGTTTTGAAGTAAGGTATTCCATCAGGATTAAAATCAAGCTTGCTCGGGCAAGTATCTTTCTCTTTGCTATGGAGAAAGGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR GCA 90 bp CTGTTTTTCCTGTTTAAAATGCAGCAACTTACTCATTCCTGTAAAGATGGACAGTGTGCCAGTCTTGCCTaGCTATGTGGTACAAGTTTA +
Preference number: 2 (lower is better)
Translates to: LFFLFKMQQLTHSCKDGQCASLA*LCGTSL
Trigger: TAAACTTGTACCACATAGGCAGGCAAGACTGGCACA...CTGTCCATCTTTACAGGAATGAGTAAGTTGCTGCATTTTAAACAGGAAAAACAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR GCA 90 bp CTGTTTTTCCTGTTTAAAATGCAGCAACTTACTCATTCCTGTAAAGATGGACAGTTATCATCCCTGGGTTaGTGTTTCCTCTGCACAATG +
Preference number: 2 (lower is better)
Translates to: LFFLFKMQQLTHSCKDGQLSSLG*CFLCTM
Trigger: CATTGTGCAGAGGAAACAGCAACCCAGGGATGATAA...CTGTCCATCTTTACAGGAATGAGTAAGTTGCTGCATTTTAAACAGGAAAAACAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR TCA 90 bp CTGTTTTTCCTGTTTAAAATGCAGCAACTTACTCATTCCTGTAAAGATGGACAGATGAAAAGAGGCATTTaGACAGCATGGTTCCAAGTG +
Preference number: 2 (lower is better)
Translates to: LFFLFKMQQLTHSCKDGQMKRGI*TAWFQV
Trigger: CACTTGGAACCATGCTGTTCAAATGCCTCTTTTCAT...CTGTCCATCTTTACAGGAATGAGTAAGTTGCTGCATTTTAAACAGGAAAAACAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR CCA 90 bp CTGTTTTTCCTGTTTAAAATGCAGCAACTTACTCATTCCTGTAAAGATGGACAGGTCTATCAGATGAAATaGCTAGATCTGACTAGATTC +
Preference number: 2 (lower is better)
Translates to: LFFLFKMQQLTHSCKDGQVYQMK*LDLTRF
Trigger: GAATCTAGTCAGATCTAGCCATTTCATCTGATAGAC...CTGTCCATCTTTACAGGAATGAGTAAGTTGCTGCATTTTAAACAGGAAAAACAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR GCA 72 bp CCAGGCTGGTCTCAAACTCAGAGATCTGCCTGTATCTaGCTCGTCGCACAGGCTGAGACTAAAGGCATGTGC +
Preference number: 3 (lower is better)
Translates to: PGWSQTQRSACI*LVAQAETKGMC
Trigger: GCACATGCCTTTAGTCTCAGCCTGTGCGACGAGGCAGATACAGGCAGATCTCTGAGTTTGAGACCAGCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR GCA 72 bp CTGAACTCTCAGATCCTCCTGCCTCGGCATCCCAAGTaGTGTGATTACAAGTGTGTATCGCTGCTGGGCTGT +
Preference number: 3 (lower is better)
Translates to: LNSQILLPRHPK*CDYKCVSLLGC
Trigger: ACAGCCCAGCAGCGATACACACTTGTAATCACAGCACTTGGGATGCCGAGGCAGGAGGATCTGAGAGTTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR CAA 90 bp AAGAAGCGCCTCGGCCTAGAAAGATGGGGGTCAGTTTCTCTCCAGGACTATGAGAGGCATGTGCCAGTCTaGCCTGCCTATGTGGTACAA +
Preference number: 3 (lower is better)
Translates to: KKRLGLERWGSVSLQDYERHVPV*PAYVVQ
Trigger: TTGTACCACATAGGCAGGCAAGACTGGCACATGCCT...CTCATAGTCCTGGAGAGAAACTGACCCCCATCTTTCTAGGCCGAGGCGCTTCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR CAA 90 bp AAGAAGCGCCTCGGCCTAGAAAGATGGGGGTCAGTTTCTCTCCAGGACTATGAGGTGGTGGTAGGAGGCTaGTGGGCGTTTTGTTTGGTT +
Preference number: 3 (lower is better)
Translates to: KKRLGLERWGSVSLQDYEVVVGG*WAFCLV
Trigger: AACCAAACAAAACGCCCACAAGCCTCCTACCACCAC...CTCATAGTCCTGGAGAGAAACTGACCCCCATCTTTCTAGGCCGAGGCGCTTCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR GCA 72 bp GTCGCACAGGCTGAGACTAAAGGCATGTGCCAGTCTTaGCTGCCTATGTGGTACAAGTTTATGCCTCTGCAG +
Preference number: 3 (lower is better)
Translates to: VAQAETKGMCQS*LPMWYKFMPLQ
Trigger: CTGCAGAGGCATAAACTTGTACCACATAGGCAGGCAAGACTGGCACATGCCTTTAGTCTCAGCCTGTGCGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR CCA 72 bp CCAGTTTACTGCTGGCTACCGCAACCTTACACAGGCTaGTTATCATCCCTGGGTTGCTGTTTCCTCTGCACA +
Preference number: 3 (lower is better)
Translates to: PVYCWLPQPYTG*LSSLGCCFLCT
Trigger: TGTGCAGAGGAAACAGCAACCCAGGGATGATAACCAGCCTGTGTAAGGTTGCGGTAGCCAGCAGTAAACTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR TCA 72 bp CAATCTCTGAGTTCTAGGCCAGCCTGGTCTACAGAGTaGGTTCCAGGACAACCAGGGCTTTTTAGACAGACC +
Preference number: 3 (lower is better)
Translates to: QSLSSRPAWSTE*VPGQPGLFRQT
Trigger: GGTCTGTCTAAAAAGCCCTGGTTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTAGAACTCAGAGATTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR GCA 72 bp ACAGGCTGGTTATCATCCCTGGGTTGCTGTTTCCTCTaGACAATGAAACAGTCAGTCGCTGCCATAAGGCCA +
Preference number: 3 (lower is better)
Translates to: TGWLSSLGCCFL*TMKQSVAAIRP
Trigger: TGGCCTTATGGCAGCGACTGACTGTTTCATTGTGCAGAGGAAACAGCAACCCAGGGATGATAACCAGCCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR GCA 72 bp CCGCAACCTTACACAGGCTGGTTATCATCCCTGGGTTaGTGTTTCCTCTGCACAATGAAACAGTCAGTCGCT +
Preference number: 3 (lower is better)
Translates to: PQPYTGWLSSLG*CFLCTMKQSVA
Trigger: AGCGACTGACTGTTTCATTGTGCAGAGGAAACAGCAACCCAGGGATGATAACCAGCCTGTGTAAGGTTGCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR GCA 72 bp GGCATCCCAAGTGCTGTGATTACAAGTGTGTATCGCTaGTGGGCTGTGATGCTGCATGCCTTTAATTCGAGC +
Preference number: 3 (lower is better)
Translates to: GIPSAVITSVYR*WAVMLHAFNSS
Trigger: GCTCGAATTAAAGGCATGCAGCATCACAGCCCAGCAGCGATACACACTTGTAATCACAGCACTTGGGATGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR GCA 72 bp CTGCCTACATGTATGTTGGTGTACCCATCATGTGTGTaGCTGGTGCCTGTGGAGGTCAGAAGAGGGAATTAC +
Preference number: 3 (lower is better)
Translates to: LPTCMLVYPSCV*LVPVEVRRGNY
Trigger: GTAATTCCCTCTTCTGACCTCCACAGGCACCAGGCACACACATGATGGGTACACCAACATACATGTAGGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
3UTR-3UTR CAA 90 bp TGGGAGTCAGAGGCAAGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGCTTGCCCGAGCAAGCTaGATTTTAATCCTGATGGAA +
Preference number: 3 (lower is better)
Translates to: WESEASRFLSSRPAWSTKLARAS*ILILME
Trigger: TTCCATCAGGATTAAAATCAAGCTTGCTCGGGCAAG...CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCTTGCCTCTGACTCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR GCA 72 bp CACAGGCTGAGACTAAAGGCATGTGCCAGTCTTGCCTaGCTATGTGGTACAAGTTTATGCCTCTGCAGTAAC +
Preference number: 3 (lower is better)
Translates to: HRLRLKACASLA*LCGTSLCLCSN
Trigger: GTTACTGCAGAGGCATAAACTTGTACCACATAGGCAGGCAAGACTGGCACATGCCTTTAGTCTCAGCCTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR CCA 72 bp CTACATGTATGTTGGTGTACCCATCATGTGTGTGCCTaGTGCCTGTGGAGGTCAGAAGAGGGAATTACACGT +
Preference number: 3 (lower is better)
Translates to: LHVCWCTHHVCA*CLWRSEEGITR
Trigger: ACGTGTAATTCCCTCTTCTGACCTCCACAGGCACCAGGCACACACATGATGGGTACACCAACATACATGTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
3UTR-3UTR CAA 90 bp TGGGAGTCAGAGGCAAGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTTCTTCCCCAAAGTATaGGCACATAAATGTCAACAG +
Preference number: 3 (lower is better)
Translates to: WESEASRFLSSRPAWSTKFFPKV*AHKCQQ
Trigger: CTGTTGACATTTATGTGCCAATACTTTGGGGAAGAA...CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCTTGCCTCTGACTCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR CCA 72 bp AGGCAATTTAATCACCCACTTAAAAGTCTTACGATCTaGGAGTTAGGTGAGCAGCTCAATGGCCGGGCACAT +
Preference number: 3 (lower is better)
Translates to: RQFNHPLKSLTI*ELGEQLNGRAH
Trigger: ATGTGCCCGGCCATTGAGCTGCTCACCTAACTCCCAGATCGTAAGACTTTTAAGTGGGTGATTAAATTGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR CAA 90 bp TGTGCCGTGAAACAGTTTTGGTGCTACCTCAGTGAGATGTTTTTCTTTACCTGTTTAACCAGGTTGTCCTaGAACTCATGGGAGCTGCCT +
Preference number: 3 (lower is better)
Translates to: CAVKQFWCYLSEMFFFTCLTRLS*NSWELP
Trigger: AGGCAGCTCCCATGAGTTCAAGGACAACCTGGTTAA...ACAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAAAACTGTTTCACGGCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR TCA 72 bp AACTCCTGTGGTCCACAGACACACACACACACACTGTaGAGTGTAGCTTTGGCTCTTCTGGTGAAGTATATA +
Preference number: 3 (lower is better)
Translates to: NSCGPQTHTHTL*SVALALLVKYI
Trigger: TATATACTTCACCAGAAGAGCCAAAGCTACACTTCACAGTGTGTGTGTGTGTGTCTGTGGACCACAGGAGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR TCA 72 bp CCTAGCCGTGCCTTACATATTCCATCCCTTACCATGTaGCTAACAAGAGCCAAGTTCTCCTACTTAAATCAC +
Preference number: 3 (lower is better)
Translates to: PSRALHIPSLTM*LTRAKFSYLNH
Trigger: GTGATTTAAGTAGGAGAACTTGGCTCTTGTTAGTCACATGGTAAGGGATGGAATATGTAAGGCACGGCTAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR TCA 72 bp TGTGGTACAAGTTTATGCCTCTGCAGTAACTCGAAGTaGCAAGTCCTCCATAATGCGAGAATGTATCTGAGC +
Preference number: 3 (lower is better)
Translates to: CGTSLCLCSNSK*QVLHNARMYLS
Trigger: GCTCAGATACATTCTCGCATTATGGAGGACTTGTCACTTCGAGTTACTGCAGAGGCATAAACTTGTACCACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR TCA 72 bp TTAATGTGCCGTGAAACAGTTTTGGTGCTACCTCAGTaGGATGTTTTTCTTTACCTGTGGGCAGCAAATGAG +
Preference number: 3 (lower is better)
Translates to: LMCRETVLVLPQ*DVFLYLWAANE
Trigger: CTCATTTGCTGCCCACAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAAAACTGTTTCACGGCACATTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR TCA 72 bp CGAAGTGACAAGTCCTCCATAATGCGAGAATGTATCTaGGCCAAAGCAGCACAGCTGAACAAAAATCTCTTA +
Preference number: 3 (lower is better)
Translates to: RSDKSSIMRECI*AKAAQLNKNLL
Trigger: TAAGAGATTTTTGTTCAGCTGTGCTGCTTTGGCTCAGATACATTCTCGCATTATGGAGGACTTGTCACTTCG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR GCA 72 bp AGAGCCAAGTTCTCCTACTTAAATCACCAAAACTACTaGAAGGAACTGTTCCTGAAAGGCAGTACGGATGTA +
Preference number: 3 (lower is better)
Translates to: RAKFSYLNHQNY*KELFLKGSTDV
Trigger: TACATCCGTACTGCCTTTCAGGAACAGTTCCTTGCAGTAGTTTTGGTGATTTAAGTAGGAGAACTTGGCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR GCA 72 bp TTGCTGTTTCCTCTGCACAATGAAACAGTCAGTCGCTaGCATAAGGCCAGCATCTCTTTTACATTGTACAAT +
Preference number: 3 (lower is better)
Translates to: LLFPLHNETVSR*HKASISFTLYN
Trigger: ATTGTACAATGTAAAAGAGATGCTGGCCTTATGGCAGCGACTGACTGTTTCATTGTGCAGAGGAAACAGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR CCA 72 bp GTGCCTGTGGAGGTCAGAAGAGGGAATTACACGTCCTaGAACAAAGATTACAGATATTTGTTAGCCACAATA +
Preference number: 3 (lower is better)
Translates to: VPVEVRRGNYTS*NKDYRYLLATI
Trigger: TATTGTGGCTAACAAATATCTGTAATCTTTGTTCCAGGACGTGTAATTCCCTCTTCTGACCTCCACAGGCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
3UTR-3UTR CAA 90 bp TGTGCCGTGAAACAGTTTTGGTGCTACCTCAGTGAGATGTTTTTCTTTACCTGTCCAGAAAACATGTCCTaGTCAAAGGACTCTGGATTT +
Preference number: 3 (lower is better)
Translates to: CAVKQFWCYLSEMFFFTCPENMS*SKDSGF
Trigger: AAATCCAGAGTCCTTTGACAAGGACATGTTTTCTGG...ACAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAAAACTGTTTCACGGCACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR CAA 90 bp GCCAGGAGTTCAAGACCAACCCTAGACAACATAATGAGACCCTCACCTCAAAAAACTAGAGGAAATAGTTaGAACTCAAGACTTGTTCTG +
Preference number: 3 (lower is better)
Translates to: ARSSRPTLDNIMRPSPQKTRGNS*NSRLVL
Trigger: CAGAACAAGTCTTGAGTTCAAACTATTTCCTCTAGT...TTTTTGAGGTGAGGGTCTCATTATGTTGTCTAGGGTTGGTCTTGAACTCCTGGC
42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR CAA 90 bp TCTGCTCAAGATGTAGGGAAAATAGAGCTTCAGACTCCACTTCTAAGATTTGAACTGCCTACATGTATGTaGGTGTACCCATCATGTGTG +
Preference number: 3 (lower is better)
Translates to: SAQDVGKIELQTPLLRFELPTCM*VYPSCV
Trigger: CACACATGATGGGTACACCAACATACATGTAGGCAG...TTCAAATCTTAGAAGTGGAGTCTGAAGCTCTATTTTCCCTACATCTTGAGCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
3UTR TCA 72 bp TCCTGTAAAGATGGACAGAGAAGGTTATGGAAAGCTTaGAATACACGAACATGTTTCCAGTTTACTGCTGGC +
Preference number: 3 (lower is better)
Translates to: SCKDGQRRLWKA*NTRTCFQFTAG
Trigger: GCCAGCAGTAAACTGGAAACATGTTCGTGTATTTCAAGCTTTCCATAACCTTCTCTGTCCATCTTTACAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR-3UTR CAA 90 bp AAAGATTACAGATATTTGTTAGCCACAATATGGTACTCAAATCAAACCCAGGTCCTGCCTACATGTATGTaGGTGTACCCATCATGTGTG +
Preference number: 3 (lower is better)
Translates to: KDYRYLLATIWYSNQTQVLPTCM*VYPSCV
Trigger: CACACATGATGGGTACACCAACATACATGTAGGCAG...GACCTGGGTTTGATTTGAGTACCATATTGTGGCTAACAAATATCTGTAATCTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
3UTR TCA 72 bp TTTCTCTCCAGGACTATGAGGCCCACCTTGTTTACATaGCGCTTAACTGTAATATGGCACAATAGACTTTAT +
Preference number: 3 (lower is better)
Translates to: FLSRTMRPTLFT*RLTVIWHNRLY
Trigger: ATAAAGTCTATTGTGCCATATTACAGTTAAGCGTCATGTAAACAAGGTGGGCCTCATAGTCCTGGAGAGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR CCA 72 bp TGGAACAAAGATTACAGATATTTGTTAGCCACAATATaGTACTCAAATCAAACCCAGGTCCTCTGGAACAGC +
Preference number: 3 (lower is better)
Translates to: WNKDYRYLLATI*YSNQTQVLWNS
Trigger: GCTGTTCCAGAGGACCTGGGTTTGATTTGAGTACCATATTGTGGCTAACAAATATCTGTAATCTTTGTTCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
3UTR TCA 72 bp TTAAACAACCGTGTAACTGAGCCTCGTATTTCTTTATaGATGGAAACTAATCCAATGACTGCTTTCCCCTTC +
Preference number: 3 (lower is better)
Translates to: LNNRVTEPRISL*METNPMTAFPF
Trigger: GAAGGGGAAAGCAGTCATTGGATTAGTTTCCATTCATAAAGAAATACGAGGCTCAGTTACACGGTTGTTTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR CCA 72 bp CTCTCAGCAAGTACCACATGGTCCTCAACTCTATTCTaGAAGGACCAGAACTTTTGTTTTTATATACTTTCA +
Preference number: 3 (lower is better)
Translates to: LSASTTWSSTLF*KDQNFCFYILS
Trigger: TGAAAGTATATAAAAACAAAAGTTCTGGTCCTTCCAGAATAGAGTTGAGGACCATGTGGTACTTGCTGAGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR TCA 72 bp AACAGCCTAAAAGAGTACATAATGAAAAGAGGCATTTaGACAGCATGGTTCCAAGTGACTAACTCTATGTCT +
Preference number: 3 (lower is better)
Translates to: NSLKEYIMKRGI*TAWFQVTNSMS
Trigger: AGACATAGAGTTAGTCACTTGGAACCATGCTGTTCAAATGCCTCTTTTCATTATGTACTCTTTTAGGCTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR TCA 72 bp AGCCTCGTATTTCTTTATGAATGGAAACTAATCCAATaGCTGCTTTCCCCTTCCCACTTCAGGAAAAATATA +
Preference number: 3 (lower is better)
Translates to: SLVFLYEWKLIQ*LLSPSHFRKNI
Trigger: TATATTTTTCCTGAAGTGGGAAGGGGAAAGCAGTCATTGGATTAGTTTCCATTCATAAAGAAATACGAGGCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR GCA 72 bp TTCTCACACCAGGAGTGTAAAATTCTTACCATCTGTTaGTCTATAAAAGGCAACATGAAGCATCAAATTCAG +
Preference number: 3 (lower is better)
Translates to: FSHQECKILTIC*SIKGNMKHQIQ
Trigger: CTGAATTTGATGCTTCATGTTGCCTTTTATAGAGCAACAGATGGTAAGAATTTTACACTCCTGGTGTGAGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR TCA 72 bp AGGGAAAATAGAGCTTCAGACTCCACTTCTAAGATTTaGAGGGTCTATCTTGTGCTAATAACATTCAATTTA +
Preference number: 3 (lower is better)
Translates to: RENRASDSTSKI*RVYLVLITFNL
Trigger: TAAATTGAATGTTATTAGCACAAGATAGACCCTTCAAATCTTAGAAGTGGAGTCTGAAGCTCTATTTTCCCT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
3UTR CCA 72 bp ATTGATTTCTTACGATCTACTTCTTCCCCAAAGTATTaGCACATAAATGTCAACAGCCTAAAAGAGTACATA +
Preference number: 3 (lower is better)
Translates to: IDFLRSTSSPKY*HINVNSLKEYI
Trigger: TATGTACTCTTTTAGGCTGTTGACATTTATGTGCCAATACTTTGGGGAAGAAGTAGATCGTAAGAAATCAAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR GCA 90 bp TGGGAGTCAGAGGCAAGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGCTACTGCAGTCACTGTaGTCCTCGGCTGTGGCCTCC +
Preference number: 4 (lower is better)
Translates to: WESEASRFLSSRPAWSTKLLQSL*SSAVAS
Trigger: GGAGGCCACAGCCGAGGAGCACAGTGACTGCAGTAG...CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCTTGCCTCTGACTCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR TCA 90 bp TGGGAGTCAGAGGCAAGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGAGCACTGATGATCACTaGCTTGGGACAAGGCAGCAG +
Preference number: 4 (lower is better)
Translates to: WESEASRFLSSRPAWSTKSTDDH*LGTRQQ
Trigger: CTGCTGCCTTGTCCCAAGTCAGTGATCATCAGTGCT...CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCTTGCCTCTGACTCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR GCA 90 bp AAGTGCTGTGATTACAAGTGTGTATCGCTGCTGGGCTGTGATGCTGCATGCCTTCTGAGCTCTCCCTACTaGAGTCACTGTGCTCCTCGG +
Preference number: 4 (lower is better)
Translates to: KCCDYKCVSLLGCDAACLLSSPY*SHCAPR
Trigger: CCGAGGAGCACAGTGACTGCAGTAGGGAGAGCTCAG...AAGGCATGCAGCATCACAGCCCAGCAGCGATACACACTTGTAATCACAGCACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp AAGGTCACGAGTGAAATAAGGACTGAGACACAGCTCCATGGGGCATGCACAGGGAGTCAAACCCTGGAATaGACGGGGTTGCCATCACAC +
Preference number: 4 (lower is better)
Translates to: KVTSEIRTETQLHGACTGSQTLE*TGLPSH
Trigger: GTGTGATGGCAACCCCGTCCATTCCAGGGTTTGACT...CCCTGTGCATGCCCCATGGAGCTGTGTCTCAGTCCTTATTTCACTCGTGACCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp AAGTGCTGTGATTACAAGTGTGTATCGCTGCTGGGCTGTGATGCTGCATGCCTTAGGTACTGGACAAGCTaGATGTGCTGCCCAGGCCGA +
Preference number: 4 (lower is better)
Translates to: KCCDYKCVSLLGCDAACLRYWTS*MCCPGR
Trigger: TCGGCCTGGGCAGCACATCCAGCTTGTCCAGTACCT...AAGGCATGCAGCATCACAGCCCAGCAGCGATACACACTTGTAATCACAGCACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp AAGAAGCGCCTCGGCCTAGAAAGATGGGGGTCAGTTTCTCTCCAGGACTATGAGTCTTCATCTTGGCTCTaGCTCATCAGCTGCCTCTGG +
Preference number: 4 (lower is better)
Translates to: KKRLGLERWGSVSLQDYESSSWL*LISCLW
Trigger: CCAGAGGCAGCTGATGAGCCAGAGCCAAGATGAAGA...CTCATAGTCCTGGAGAGAAACTGACCCCCATCTTTCTAGGCCGAGGCGCTTCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR TCA 90 bp AAGGTCACGAGTGAAATAAGGACTGAGACACAGCTCCATGGGGCATGCACAGGGACAGGGAAATTTCTCTaGAGTGGCAGGAGACATGGC +
Preference number: 4 (lower is better)
Translates to: KVTSEIRTETQLHGACTGTGKFL*SGRRHG
Trigger: GCCATGTCTCCTGCCACTTCAGAGAAATTTCCCTGT...CCCTGTGCATGCCCCATGGAGCTGTGTCTCAGTCCTTATTTCACTCGTGACCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR TCA 90 bp AAGGTCACGAGTGAAATAAGGACTGAGACACAGCTCCATGGGGCATGCACAGGGCGTTCCAAAGGAACCTaGCAGCCTCTTCTTGCACAA +
Preference number: 4 (lower is better)
Translates to: KVTSEIRTETQLHGACTGRSKGT*QPLLAQ
Trigger: TTGTGCAAGAAGAGGCTGTCAGGTTCCTTTGGAACG...CCCTGTGCATGCCCCATGGAGCTGTGTCTCAGTCCTTATTTCACTCGTGACCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR GCA 90 bp AAGAAGCGCCTCGGCCTAGAAAGATGGGGGTCAGTTTCTCTCCAGGACTATGAGGAGTTTGGCATCCTCTaGAGTTTGAAGACCCAGTGC +
Preference number: 4 (lower is better)
Translates to: KKRLGLERWGSVSLQDYEEFGIL*SLKTQC
Trigger: GCACTGGGTCTTCAAACTGCAGAGGATGCCAAACTC...CTCATAGTCCTGGAGAGAAACTGACCCCCATCTTTCTAGGCCGAGGCGCTTCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR GCA 90 bp AAGAAGCGCCTCGGCCTAGAAAGATGGGGGTCAGTTTCTCTCCAGGACTATGAGGTTAGGCAGACAATGTaGTCCTGCATTCTGCGTAGC +
Preference number: 4 (lower is better)
Translates to: KKRLGLERWGSVSLQDYEVRQTM*SCILRS
Trigger: GCTACGCAGAATGCAGGAGCACATTGTCTGCCTAAC...CTCATAGTCCTGGAGAGAAACTGACCCCCATCTTTCTAGGCCGAGGCGCTTCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp TGGGAGTCAGAGGCAAGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTTCAGCCACTCCAAATaGACTAGGTCCTTCAGGCCT +
Preference number: 4 (lower is better)
Translates to: WESEASRFLSSRPAWSTKFSHSK*TRSFRP
Trigger: AGGCCTGAAGGACCTAGTCCATTTGGAGTGGCTGAA...CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCTTGCCTCTGACTCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp AAGAAGCGCCTCGGCCTAGAAAGATGGGGGTCAGTTTCTCTCCAGGACTATGAGGCATCGTCCAGCTGCTaGACGGAGGTTAAATACTGT +
Preference number: 4 (lower is better)
Translates to: KKRLGLERWGSVSLQDYEASSSC*TEVKYC
Trigger: ACAGTATTTAACCTCCGTCCAGCAGCTGGACGATGC...CTCATAGTCCTGGAGAGAAACTGACCCCCATCTTTCTAGGCCGAGGCGCTTCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR GCA 90 bp AAGGTCACGAGTGAAATAAGGACTGAGACACAGCTCCATGGGGCATGCACAGGGTGGAATGGACGGGGTTaGCATCACACAAGGATTGTT +
Preference number: 4 (lower is better)
Translates to: KVTSEIRTETQLHGACTGWNGRG*HHTRIV
Trigger: AACAATCCTTGTGTGATGGCAACCCCGTCCATTCCA...CCCTGTGCATGCCCCATGGAGCTGTGTCTCAGTCCTTATTTCACTCGTGACCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp AAGAAGCGCCTCGGCCTAGAAAGATGGGGGTCAGTTTCTCTCCAGGACTATGAGCTTCACAGGGCAAGTTaGCACCTAATTTCTGCAGTC +
Preference number: 4 (lower is better)
Translates to: KKRLGLERWGSVSLQDYELHRAS*HLISAV
Trigger: GACTGCAGAAATTAGGTGCCAACTTGCCCTGTGAAG...CTCATAGTCCTGGAGAGAAACTGACCCCCATCTTTCTAGGCCGAGGCGCTTCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp GTTCTGCCTACATGTATGTTGGTGTACCCATCATGTGTGTGCCTGGTGCCTGTGGGAGTTGAGTCAGTTTaGCCACACCCATCATCCGTA +
Preference number: 4 (lower is better)
Translates to: VLPTCMLVYPSCVCLVPVGVESV*PHPSSV
Trigger: TACGGATGATGGGTGTGGCCAAACTGACTCAACTCC...CACAGGCACCAGGCACACACATGATGGGTACACCAACATACATGTAGGCAGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS-3UTR CCA 90 bp GTGTTCTGCCTACATGTATGTTGGTGTACCCATCATGTGTGTGCCTGGTGCCTGGGAGTTGAGTCAGTTTaGCCACACCCATCATCCGTA +
Preference number: 4 (lower is better)
Translates to: VFCLHVCWCTHHVCAWCLGVESV*PHPSSV
Trigger: TACGGATGATGGGTGTGGCCAAACTGACTCAACTCC...CAGGCACCAGGCACACACATGATGGGTACACCAACATACATGTAGGCAGAACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS-3UTR CCA 90 bp ATGTATGTTGGTGTACCCATCATGTGTGTGCCTGGTGCCTGTGGAGGTCAGAAGTTCAGCCACTCCAAATaGACTAGGTCCTTCAGGCCT +
Preference number: 4 (lower is better)
Translates to: MYVGVPIMCVPGACGGQKFSHSK*TRSFRP
Trigger: AGGCCTGAAGGACCTAGTCCATTTGGAGTGGCTGAA...CTTCTGACCTCCACAGGCACCAGGCACACACATGATGGGTACACCAACATACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS-3UTR CCA 90 bp GGTGTTCTGCCTACATGTATGTTGGTGTACCCATCATGTGTGTGCCTGGTGCCTTTCAGCCACTCCAAATaGACTAGGTCCTTCAGGCCT +
Preference number: 4 (lower is better)
Translates to: GVLPTCMLVYPSCVCLVPFSHSK*TRSFRP
Trigger: AGGCCTGAAGGACCTAGTCCATTTGGAGTGGCTGAA...AGGCACCAGGCACACACATGATGGGTACACCAACATACATGTAGGCAGAACACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS-3UTR CCA 90 bp AAGTGCTGTGATTACAAGTGTGTATCGCTGCTGGGCTGTGATGCTGCATGCCTTACAGGTTCACTTTCCTaGAAGTCTTGCCCGGGGCTT +
Preference number: 4 (lower is better)
Translates to: KCCDYKCVSLLGCDAACLTGSLS*KSCPGL
Trigger: AAGCCCCGGGCAAGACTTCCAGGAAAGTGAACCTGT...AAGGCATGCAGCATCACAGCCCAGCAGCGATACACACTTGTAATCACAGCACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp AAGGTCACGAGTGAAATAAGGACTGAGACACAGCTCCATGGGGCATGCACAGGGTCCTTATCCTCGTCCTaGTTTTCCAGCCCTTTTGTG +
Preference number: 4 (lower is better)
Translates to: KVTSEIRTETQLHGACTGSLSSS*FSSPFV
Trigger: CACAAAAGGGCTGGAAAACCAGGACGAGGATAAGGA...CCCTGTGCATGCCCCATGGAGCTGTGTCTCAGTCCTTATTTCACTCGTGACCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR CAA 72 bp ACCGCAACCTTACACAGGCTGGTTATCATCCCTGGGTaGCTGTTTCCTCTGCACAATGAAACAGTCAGTCGC +
Preference number: 4 (lower is better)
Translates to: TATLHRLVIIPG*LFPLHNETVSR
Trigger: GCGACTGACTGTTTCATTGTGCAGAGGAAACAGCAACCCAGGGATGATAACCAGCCTGTGTAAGGTTGCGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR TCA 90 bp CTCAAATCAAACCCAGGTCCTCTGGAACAGCAGCCAGTGCTCTTAACCTTTGAGGAGCCGTACAGCTATTaGCTTGCTCCATGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: LKSNPGPLEQQPVLLTFEEPYSY*LAPWSS
Trigger: TGAAGACCATGGAGCAAGTCAATAGCTGTACGGCTC...CTCAAAGGTTAAGAGCACTGGCTGCTGTTCCAGAGGACCTGGGTTTGATTTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
CDS-3UTR GCA 90 bp GCCAGGAGTTCAAGACCAACCCTAGACAACATAATGAGACCCTCACCTCAAAAATGGACAAGCTGGATGTaGTGCCCAGGCCGATACGAT +
Preference number: 4 (lower is better)
Translates to: ARSSRPTLDNIMRPSPQKWTSWM*CPGRYD
Trigger: ATCGTATCGGCCTGGGCAGCACATCCAGCTTGTCCA...TTTTTGAGGTGAGGGTCTCATTATGTTGTCTAGGGTTGGTCTTGAACTCCTGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR GCA 90 bp TGGGAGTCAGAGGCAAGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGATATCTTGCAGCGTGTaGAGCAGCTGGGAAGTTATT +
Preference number: 4 (lower is better)
Translates to: WESEASRFLSSRPAWSTKISCSV*SSWEVI
Trigger: AATAACTTCCCAGCTGCTGCACACGCTGCAAGATAT...CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCTTGCCTCTGACTCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR GCA 90 bp TGGGAGTCAGAGGCAAGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGCTGACAGCCTCTTCTTaGACAAAAGTCTTCACACGT +
Preference number: 4 (lower is better)
Translates to: WESEASRFLSSRPAWSTKLTASS*TKVFTR
Trigger: ACGTGTGAAGACTTTTGTGCAAGAAGAGGCTGTCAG...CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCTTGCCTCTGACTCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR GCA 90 bp AAGAAGCGCCTCGGCCTAGAAAGATGGGGGTCAGTTTCTCTCCAGGACTATGAGAAATCCAACGAATCCTaGAGACAGGGAACTTGCTCT +
Preference number: 4 (lower is better)
Translates to: KKRLGLERWGSVSLQDYEKSNES*RQGTCS
Trigger: AGAGCAAGTTCCCTGTCTGCAGGATTCGTTGGATTT...CTCATAGTCCTGGAGAGAAACTGACCCCCATCTTTCTAGGCCGAGGCGCTTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp ATGTATGTTGGTGTACCCATCATGTGTGTGCCTGGTGCCTGTGGAGGTCAGAAGCTTCACAGGGCAAGTTaGCACCTAATTTCTGCAGTC +
Preference number: 4 (lower is better)
Translates to: MYVGVPIMCVPGACGGQKLHRAS*HLISAV
Trigger: GACTGCAGAAATTAGGTGCCAACTTGCCCTGTGAAG...CTTCTGACCTCCACAGGCACCAGGCACACACATGATGGGTACACCAACATACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS-3UTR CCA 90 bp GGTGTTCTGCCTACATGTATGTTGGTGTACCCATCATGTGTGTGCCTGGTGCCTCTTCACAGGGCAAGTTaGCACCTAATTTCTGCAGTC +
Preference number: 4 (lower is better)
Translates to: GVLPTCMLVYPSCVCLVPLHRAS*HLISAV
Trigger: GACTGCAGAAATTAGGTGCCAACTTGCCCTGTGAAG...AGGCACCAGGCACACACATGATGGGTACACCAACATACATGTAGGCAGAACACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS-3UTR CCA 90 bp AAGAAGCGCCTCGGCCTAGAAAGATGGGGGTCAGTTTCTCTCCAGGACTATGAGGCTGATTGTAGTTCCTaGTGTAAAAGCCTCTCCAAC +
Preference number: 4 (lower is better)
Translates to: KKRLGLERWGSVSLQDYEADCSS*CKSLSN
Trigger: GTTGGAGAGGCTTTTACACCAGGAACTACAATCAGC...CTCATAGTCCTGGAGAGAAACTGACCCCCATCTTTCTAGGCCGAGGCGCTTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp AAGTGCTGTGATTACAAGTGTGTATCGCTGCTGGGCTGTGATGCTGCATGCCTTCATAGCGCACCCCTTTaGCTTGCTGATTGTAGTTCC +
Preference number: 4 (lower is better)
Translates to: KCCDYKCVSLLGCDAACLHSAPL*LADCSS
Trigger: GGAACTACAATCAGCAAGCCAAAGGGGTGCGCTATG...AAGGCATGCAGCATCACAGCCCAGCAGCGATACACACTTGTAATCACAGCACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR TCA 90 bp AAGGTCACGAGTGAAATAAGGACTGAGACACAGCTCCATGGGGCATGCACAGGGTCAGTTTCTGAAGGGTaGCTTTATCTTGTCCCAAAG +
Preference number: 4 (lower is better)
Translates to: KVTSEIRTETQLHGACTGSVSEG*LYLVPK
Trigger: CTTTGGGACAAGATAAAGTCACCCTTCAGAAACTGA...CCCTGTGCATGCCCCATGGAGCTGTGTCTCAGTCCTTATTTCACTCGTGACCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp GGTACTCAAATCAAACCCAGGTCCTCTGGAACAGCAGCCAGTGCTCTTAACCTTCTTCACAGGGCAAGTTaGCACCTAATTTCTGCAGTC +
Preference number: 4 (lower is better)
Translates to: GTQIKPRSSGTAASALNLLHRAS*HLISAV
Trigger: GACTGCAGAAATTAGGTGCCAACTTGCCCTGTGAAG...AAGGTTAAGAGCACTGGCTGCTGTTCCAGAGGACCTGGGTTTGATTTGAGTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
CDS-3UTR CCA 90 bp AAGGTCACGAGTGAAATAAGGACTGAGACACAGCTCCATGGGGCATGCACAGGGACCCAAGAATTGATTTaGAGGACAGGTTCACTTTCC +
Preference number: 4 (lower is better)
Translates to: KVTSEIRTETQLHGACTGTQELI*RTGSLS
Trigger: GGAAAGTGAACCTGTCCTCCAAATCAATTCTTGGGT...CCCTGTGCATGCCCCATGGAGCTGTGTCTCAGTCCTTATTTCACTCGTGACCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp AAGTGCTGTGATTACAAGTGTGTATCGCTGCTGGGCTGTGATGCTGCATGCCTTAGCGTGTGCAGCAGCTaGGAAGTTATTCTTAACAGC +
Preference number: 4 (lower is better)
Translates to: KCCDYKCVSLLGCDAACLSVCSS*EVILNS
Trigger: GCTGTTAAGAATAACTTCCCAGCTGCTGCACACGCT...AAGGCATGCAGCATCACAGCCCAGCAGCGATACACACTTGTAATCACAGCACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR GCA 90 bp AAGGTCACGAGTGAAATAAGGACTGAGACACAGCTCCATGGGGCATGCACAGGGGTACAGCTATTGACTTaGTCCATGGTCTTCAGATTA +
Preference number: 4 (lower is better)
Translates to: KVTSEIRTETQLHGACTGVQLLT*SMVFRL
Trigger: TAATCTGAAGACCATGGAGCAAGTCAATAGCTGTAC...CCCTGTGCATGCCCCATGGAGCTGTGTCTCAGTCCTTATTTCACTCGTGACCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR GCA 90 bp TGTGCCGTGAAACAGTTTTGGTGCTACCTCAGTGAGATGTTTTTCTTTACCTGTACAAGCTGGATGTGCTaGCCAGGCCGATACGATCTC +
Preference number: 4 (lower is better)
Translates to: CAVKQFWCYLSEMFFFTCTSWMC*PGRYDL
Trigger: GAGATCGTATCGGCCTGGGCAGCACATCCAGCTTGT...ACAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAAAACTGTTTCACGGCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp TGTGCCGTGAAACAGTTTTGGTGCTACCTCAGTGAGATGTTTTTCTTTACCTGTGCCTCAGCTCAACAGTaGGAGACACTGGAGACAGTC +
Preference number: 4 (lower is better)
Translates to: CAVKQFWCYLSEMFFFTCASAQQ*ETLETV
Trigger: GACTGTCTCCAGTGTCTCCCACTGTTGAGCTGAGGC...ACAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAAAACTGTTTCACGGCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp AAGTGCTGTGATTACAAGTGTGTATCGCTGCTGGGCTGTGATGCTGCATGCCTTAGAGATGTAAGACTGTaGGTATCCTCCTTCAAGGCA +
Preference number: 4 (lower is better)
Translates to: KCCDYKCVSLLGCDAACLRDVRL*VSSFKA
Trigger: TGCCTTGAAGGAGGATACCCACAGTCTTACATCTCT...AAGGCATGCAGCATCACAGCCCAGCAGCGATACACACTTGTAATCACAGCACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp AAGTGCTGTGATTACAAGTGTGTATCGCTGCTGGGCTGTGATGCTGCATGCCTTGAGGTTAAATACTGTTaGAGCAGAGTGTTGTCCTGC +
Preference number: 4 (lower is better)
Translates to: KCCDYKCVSLLGCDAACLEVKYC*SRVLSC
Trigger: GCAGGACAACACTCTGCTCCAACAGTATTTAACCTC...AAGGCATGCAGCATCACAGCCCAGCAGCGATACACACTTGTAATCACAGCACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR TCA 90 bp AAGTGCTGTGATTACAAGTGTGTATCGCTGCTGGGCTGTGATGCTGCATGCCTTAGGATTGTTCATGATTaGCAACTGCTCCAGTTCACT +
Preference number: 4 (lower is better)
Translates to: KCCDYKCVSLLGCDAACLRIVHD*QLLQFT
Trigger: AGTGAACTGGAGCAGTTGTCAATCATGAACAATCCT...AAGGCATGCAGCATCACAGCCCAGCAGCGATACACACTTGTAATCACAGCACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR TCA 90 bp GCCAGGAGTTCAAGACCAACCCTAGACAACATAATGAGACCCTCACCTCAAAAACACTGGAGACAGTCCTaGAGCAACTGGCATAAAAGT +
Preference number: 4 (lower is better)
Translates to: ARSSRPTLDNIMRPSPQKHWRQS*SNWHKS
Trigger: ACTTTTATGCCAGTTGCTTCAGGACTGTCTCCAGTG...TTTTTGAGGTGAGGGTCTCATTATGTTGTCTAGGGTTGGTCTTGAACTCCTGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR TCA 90 bp TGTGCCGTGAAACAGTTTTGGTGCTACCTCAGTGAGATGTTTTTCTTTACCTGTGTAGAGGCCACTCTATaGGTCTCACTGTCAGAGGAG +
Preference number: 4 (lower is better)
Translates to: CAVKQFWCYLSEMFFFTCVEATL*VSLSEE
Trigger: CTCCTCTGACAGTGAGACTCATAGAGTGGCCTCTAC...ACAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAAAACTGTTTCACGGCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR TCA 90 bp TGTGCCGTGAAACAGTTTTGGTGCTACCTCAGTGAGATGTTTTTCTTTACCTGTGAGCCGTACAGCTATTaGCTTGCTCCATGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: CAVKQFWCYLSEMFFFTCEPYSY*LAPWSS
Trigger: TGAAGACCATGGAGCAAGTCAATAGCTGTACGGCTC...ACAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAAAACTGTTTCACGGCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR GCA 90 bp AGGTGTTCTGCCTACATGTATGTTGGTGTACCCATCATGTGTGTGCCTGGTGCCACTGGATTAACTGTTTaGATTTCTCTAGGTTCTCCA +
Preference number: 4 (lower is better)
Translates to: RCSAYMYVGVPIMCVPGATGLTV*ISLGSP
Trigger: TGGAGAACCTAGAGAAATGCAAACAGTTAATCCAGT...GGCACCAGGCACACACATGATGGGTACACCAACATACATGTAGGCAGAACACCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS-3UTR GCA 90 bp TGTGCCGTGAAACAGTTTTGGTGCTACCTCAGTGAGATGTTTTTCTTTACCTGTTGTGCTCCTGCATTCTaGGTAGCCGGATTTCATAGC +
Preference number: 4 (lower is better)
Translates to: CAVKQFWCYLSEMFFFTCCAPAF*VAGFHS
Trigger: GCTATGAAATCCGGCTACGCAGAATGCAGGAGCACA...ACAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAAAACTGTTTCACGGCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR GCA 90 bp TGTGCCGTGAAACAGTTTTGGTGCTACCTCAGTGAGATGTTTTTCTTTACCTGTCAGACAATGTGCTCCTaGATTCTGCGTAGCCGGATT +
Preference number: 4 (lower is better)
Translates to: CAVKQFWCYLSEMFFFTCQTMCS*ILRSRI
Trigger: AATCCGGCTACGCAGAATGCAGGAGCACATTGTCTG...ACAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAAAACTGTTTCACGGCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp TGTGCCGTGAAACAGTTTTGGTGCTACCTCAGTGAGATGTTTTTCTTTACCTGTGGAGTTGAGTCAGTTTaGCCACACCCATCATCCGTA +
Preference number: 4 (lower is better)
Translates to: CAVKQFWCYLSEMFFFTCGVESV*PHPSSV
Trigger: TACGGATGATGGGTGTGGCCAAACTGACTCAACTCC...ACAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAAAACTGTTTCACGGCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp GGGAAAATAGAGCTTCAGACTCCACTTCTAAGATTTGAAGGGTCTATCTTGTGCTTCAGCCACTCCAAATaGACTAGGTCCTTCAGGCCT +
Preference number: 4 (lower is better)
Translates to: GKIELQTPLLRFEGSILCFSHSK*TRSFRP
Trigger: AGGCCTGAAGGACCTAGTCCATTTGGAGTGGCTGAA...GCACAAGATAGACCCTTCAAATCTTAGAAGTGGAGTCTGAAGCTCTATTTTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
CDS-3UTR TCA 90 bp TTTATGTATGTAGGTGTTCTGCCTACATGTATGTTGGTGTACCCATCATGTGTGGAGCCGTACAGCTATTaGCTTGCTCCATGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: FMYVGVLPTCMLVYPSCVEPYSY*LAPWSS
Trigger: TGAAGACCATGGAGCAAGTCAATAGCTGTACGGCTC...CACACATGATGGGTACACCAACATACATGTAGGCAGAACACCTACATACATAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS-3UTR TCA 90 bp TGTGCCGTGAAACAGTTTTGGTGCTACCTCAGTGAGATGTTTTTCTTTACCTGTTGCCAACCCAAGAATTaGTTTGGAGGACAGGTTCAC +
Preference number: 4 (lower is better)
Translates to: CAVKQFWCYLSEMFFFTCCQPKN*FGGQVH
Trigger: GTGAACCTGTCCTCCAAATCAATTCTTGGGTTGGCA...ACAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAAAACTGTTTCACGGCACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR TCA 90 bp TGTGCCGTGAAACAGTTTTGGTGCTACCTCAGTGAGATGTTTTTCTTTACCTGTGCTTCTTCGTTTAACTaGCAATTCTCTGGCGTCTGG +
Preference number: 4 (lower is better)
Translates to: CAVKQFWCYLSEMFFFTCASSFN*QFSGVW
Trigger: CCAGACGCCAGAGAATTGTCAGTTAAACGAAGAAGC...ACAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAAAACTGTTTCACGGCACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR GCA 90 bp TCAAACCCAGGTCCTCTGGAACAGCAGCCAGTGCTCTTAACCTTTGAGCCATTTACTGGATTAACTGTTTaGATTTCTCTAGGTTCTCCA +
Preference number: 4 (lower is better)
Translates to: SNPGPLEQQPVLLTFEPFTGLTV*ISLGSP
Trigger: TGGAGAACCTAGAGAAATGCAAACAGTTAATCCAGT...AAATGGCTCAAAGGTTAAGAGCACTGGCTGCTGTTCCAGAGGACCTGGGTTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
CDS-3UTR TCA 90 bp CTGTTTTTCCTGTTTAAAATGCAGCAACTTACTCATTCCTGTAAAGATGGACAGATCAGCTGCCTCTGGTaGAACCTCTGCTTGCTCAGA +
Preference number: 4 (lower is better)
Translates to: LFFLFKMQQLTHSCKDGQISCLW*NLCLLR
Trigger: TCTGAGCAAGCAGAGGTTTCACCAGAGGCAGCTGAT...CTGTCCATCTTTACAGGAATGAGTAAGTTGCTGCATTTTAAACAGGAAAAACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR GCA 90 bp AAGTGCTGTGATTACAAGTGTGTATCGCTGCTGGGCTGTGATGCTGCATGCCTTTCGGATTTCGTTTTCTaGCAAAGACAATATAGAAAG +
Preference number: 4 (lower is better)
Translates to: KCCDYKCVSLLGCDAACLSDFVF*QRQYRK
Trigger: CTTTCTATATTGTCTTTGGCAGAAAACGAAATCCGA...AAGGCATGCAGCATCACAGCCCAGCAGCGATACACACTTGTAATCACAGCACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp CTGTTTTTCCTGTTTAAAATGCAGCAACTTACTCATTCCTGTAAAGATGGACAGCCGATAGTCAAACCCTaGAATGGACGGGGTTGCCAT +
Preference number: 4 (lower is better)
Translates to: LFFLFKMQQLTHSCKDGQPIVKP*NGRGCH
Trigger: ATGGCAACCCCGTCCATTCCAGGGTTTGACTATCGG...CTGTCCATCTTTACAGGAATGAGTAAGTTGCTGCATTTTAAACAGGAAAAACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR TCA 90 bp TGTGCCGTGAAACAGTTTTGGTGCTACCTCAGTGAGATGTTTTTCTTTACCTGTTGTATGTCTTCCAGGTaGAGGTCATTCCGAGAATAT +
Preference number: 4 (lower is better)
Translates to: CAVKQFWCYLSEMFFFTCCMSSR*RSFREY
Trigger: ATATTCTCGGAATGACCTTCACCTGGAAGACATACA...ACAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAAAACTGTTTCACGGCACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR TCA 90 bp TGTGCCGTGAAACAGTTTTGGTGCTACCTCAGTGAGATGTTTTTCTTTACCTGTCATAAAAGTGGACTCTaGAGAGAGCAGACTACAGTT +
Preference number: 4 (lower is better)
Translates to: CAVKQFWCYLSEMFFFTCHKSGL*REQTTV
Trigger: AACTGTAGTCTGCTCTCTTCAGAGTCCACTTTTATG...ACAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAAAACTGTTTCACGGCACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR GCA 90 bp GCCAGGAGTTCAAGACCAACCCTAGACAACATAATGAGACCCTCACCTCAAAAAACTGGATTAACTGTTTaGATTTCTCTAGGTTCTCCA +
Preference number: 4 (lower is better)
Translates to: ARSSRPTLDNIMRPSPQKTGLTV*ISLGSP
Trigger: TGGAGAACCTAGAGAAATGCAAACAGTTAATCCAGT...TTTTTGAGGTGAGGGTCTCATTATGTTGTCTAGGGTTGGTCTTGAACTCCTGGC
42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR GCA 90 bp AATATGGTACTCAAATCAAACCCAGGTCCTCTGGAACAGCAGCCAGTGCTCTTAACTGGATTAACTGTTTaGATTTCTCTAGGTTCTCCA +
Preference number: 4 (lower is better)
Translates to: NMVLKSNPGPLEQQPVLLTGLTV*ISLGSP
Trigger: TGGAGAACCTAGAGAAATGCAAACAGTTAATCCAGT...TAAGAGCACTGGCTGCTGTTCCAGAGGACCTGGGTTTGATTTGAGTACCATATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
CDS-3UTR GCA 90 bp CTGTTTTTCCTGTTTAAAATGCAGCAACTTACTCATTCCTGTAAAGATGGACAGATTCCGAGAATATCTTaGAGCGTGTGCAGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: LFFLFKMQQLTHSCKDGQIPRIS*SVCSSW
Trigger: CCAGCTGCTGCACACGCTGCAAGATATTCTCGGAAT...CTGTCCATCTTTACAGGAATGAGTAAGTTGCTGCATTTTAAACAGGAAAAACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp TGTGCCGTGAAACAGTTTTGGTGCTACCTCAGTGAGATGTTTTTCTTTACCTGTGAATCTTCTCGAGTTTaGCATCCTCTGCAGTTTGAA +
Preference number: 4 (lower is better)
Translates to: CAVKQFWCYLSEMFFFTCESSRV*HPLQFE
Trigger: TTCAAACTGCAGAGGATGCCAAACTCGAGAAGATTC...ACAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAAAACTGTTTCACGGCACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp CTGTTTTTCCTGTTTAAAATGCAGCAACTTACTCATTCCTGTAAAGATGGACAGGACAACTCTTCATCTTaGCTCTGGCTCATCAGCTGC +
Preference number: 4 (lower is better)
Translates to: LFFLFKMQQLTHSCKDGQDNSSS*LWLISC
Trigger: GCAGCTGATGAGCCAGAGCCAAGATGAAGAGTTGTC...CTGTCCATCTTTACAGGAATGAGTAAGTTGCTGCATTTTAAACAGGAAAAACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp TGTGCCGTGAAACAGTTTTGGTGCTACCTCAGTGAGATGTTTTTCTTTACCTGTCAATTCTCTGGCGTCTaGCTAATTTCATCCTGTGAA +
Preference number: 4 (lower is better)
Translates to: CAVKQFWCYLSEMFFFTCQFSGV*LISSCE
Trigger: TTCACAGGATGAAATTAGCCAGACGCCAGAGAATTG...ACAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAAAACTGTTTCACGGCACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR TCA 90 bp GAATTACACGTCCTGGAACAAAGATTACAGATATTTGTTAGCCACAATATGGTAGAGCCGTACAGCTATTaGCTTGCTCCATGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: ELHVLEQRLQIFVSHNMVEPYSY*LAPWSS
Trigger: TGAAGACCATGGAGCAAGTCAATAGCTGTACGGCTC...TACCATATTGTGGCTAACAAATATCTGTAATCTTTGTTCCAGGACGTGTAATTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
CDS-3UTR TCA 90 bp CTGTTTTTCCTGTTTAAAATGCAGCAACTTACTCATTCCTGTAAAGATGGACAGTTTCCAGCCCTTTTGTaGACTCATCTGCACCATCGT +
Preference number: 4 (lower is better)
Translates to: LFFLFKMQQLTHSCKDGQFPALL*THLHHR
Trigger: ACGATGGTGCAGATGAGTTCACAAAAGGGCTGGAAA...CTGTCCATCTTTACAGGAATGAGTAAGTTGCTGCATTTTAAACAGGAAAAACAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp CTGTTTTTCCTGTTTAAAATGCAGCAACTTACTCATTCCTGTAAAGATGGACAGAAAGCAGCAGGCCTCTaGGTCAAAATTCTACAGGGA +
Preference number: 4 (lower is better)
Translates to: LFFLFKMQQLTHSCKDGQKAAGL*VKILQG
Trigger: TCCCTGTAGAATTTTGACCCAGAGGCCTGCTGCTTT...CTGTCCATCTTTACAGGAATGAGTAAGTTGCTGCATTTTAAACAGGAAAAACAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR TCA 90 bp CTGTTTTTCCTGTTTAAAATGCAGCAACTTACTCATTCCTGTAAAGATGGACAGGCTAATTTCATCCTGTaGAGTAGAGGCCACTCTATG +
Preference number: 4 (lower is better)
Translates to: LFFLFKMQQLTHSCKDGQANFIL*SRGHSM
Trigger: CATAGAGTGGCCTCTACTTCACAGGATGAAATTAGC...CTGTCCATCTTTACAGGAATGAGTAAGTTGCTGCATTTTAAACAGGAAAAACAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR GCA 90 bp CTGTTTTTCCTGTTTAAAATGCAGCAACTTACTCATTCCTGTAAAGATGGACAGGATACGATCTCCCTTTaGCTTGACTATAGAGCCACT +
Preference number: 4 (lower is better)
Translates to: LFFLFKMQQLTHSCKDGQDTISL*LDYRAT
Trigger: AGTGGCTCTATAGTCAAGGCAAAGGGAGATCGTATC...CTGTCCATCTTTACAGGAATGAGTAAGTTGCTGCATTTTAAACAGGAAAAACAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR GCA 90 bp CTGTTTTTCCTGTTTAAAATGCAGCAACTTACTCATTCCTGTAAAGATGGACAGAGTTTGAAGACCCAGTaGAGAAGTAAGAGGACAGAC +
Preference number: 4 (lower is better)
Translates to: LFFLFKMQQLTHSCKDGQSLKTQ*RSKRTD
Trigger: GTCTGTCCTCTTACTTCTGCACTGGGTCTTCAAACT...CTGTCCATCTTTACAGGAATGAGTAAGTTGCTGCATTTTAAACAGGAAAAACAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CCA 90 bp TGTGCCGTGAAACAGTTTTGGTGCTACCTCAGTGAGATGTTTTTCTTTACCTGTTTAGCCACTGACAACTaGATTAACTGTTTGCATTTC +
Preference number: 4 (lower is better)
Translates to: CAVKQFWCYLSEMFFFTCLATDN*INCLHF
Trigger: GAAATGCAAACAGTTAATCCAGTTGTCAGTGGCTAA...ACAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAAAACTGTTTCACGGCACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR TCA 90 bp CTGTTTTTCCTGTTTAAAATGCAGCAACTTACTCATTCCTGTAAAGATGGACAGGCTGCATTCAGTTTCTaGAGGGTGACTTTATCTTGT +
Preference number: 4 (lower is better)
Translates to: LFFLFKMQQLTHSCKDGQAAFSF*RVTLSC
Trigger: ACAAGATAAAGTCACCCTTCAGAAACTGAATGCAGC...CTGTCCATCTTTACAGGAATGAGTAAGTTGCTGCATTTTAAACAGGAAAAACAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR CAA 72 bp GAAATGGTGCAAAATCAAATTATCTTTAAACTCTTCTaGCCGACACTAATGATAATCTGGAACACGGGGCTG +
Preference number: 4 (lower is better)
Translates to: EMVQNQIIFKLF*PTLMIIWNTGL
Trigger: CAGCCCCGTGTTCCAGATTATCATTAGTGTCGGCAAGAAGAGTTTAAAGATAATTTGATTTTGCACCATTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
3UTR CAA 72 bp TCCATAGCAAAGAGAAAGATACTTGCCCGAGCAAGCTaGATTTTAATCCTGATGGAATACCTTACTTCAAAA +
Preference number: 4 (lower is better)
Translates to: SIAKRKILARAS*ILILMEYLTSK
Trigger: TTTTGAAGTAAGGTATTCCATCAGGATTAAAATCAAGCTTGCTCGGGCAAGTATCTTTCTCTTTGCTATGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS TCA 90 bp CTCTGTCAGGGAGGAGTGAAACCCAGAGTCGGGAAAGTCTGGCGCTaGTCTCCCTTGCGCAGCTTCGTCCTCAGCAACGAGCCAGTCCGA +
Preference number: 5 (lower is better)
Translates to: LCQGGVKPRVGKVWR*SPLRSFVLSNEPVR
Trigger: TCGGACTGGCTCGTTGCTGAGGACGAAGCTGCGCAAGGGAGATCAGCGCCAGACTTTCCCGACTCTGGGTTTCACTCCTCCCTGACAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS GCA 90 bp GTGTTGTCCTGCTCACTGGCTGAGCTCTCCCTACTGCAGTCACTGTaGTCCTCGGCTGTGGCCTCCGAGTCTCGGTCTTTGACGCATTTC +
Preference number: 5 (lower is better)
Translates to: VLSCSLAELSLLQSL*SSAVASESRSLTHF
Trigger: GAAATGCGTCAAAGACCGAGACTCGGAGGCCACAGCCGAGGAGCACAGTGACTGCAGTAGGGAGAGCTCAGCCAGTGAGCAGGACAACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS GCA 90 bp CCTGCCACATCGTCAGAATCGGCCGCCTCTGCGGCATCGTCCAGCTaGTGGACGGAGGTTAAATACTGTTGGAGCAGAGTGTTGTCCTGC +
Preference number: 5 (lower is better)
Translates to: PATSSESAASAASSS*WTEVKYCWSRVLSC
Trigger: GCAGGACAACACTCTGCTCCAACAGTATTTAACCTCCGTCCAGCAGCTGGACGATGCCGCAGAGGCGGCCGATTCTGACGATGTGGCAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS GCA 90 bp GGCACGTCGGGCGGCCAGGAAGCCAGACGCTGTTCCACTGTCTGCTaGCAAGCTTGTACAGATCTTACCTCGTTCCAAAGGAACCTGACA +
Preference number: 5 (lower is better)
Translates to: GTSGGQEARRCSTVC*QACTDLTSFQRNLT
Trigger: TGTCAGGTTCCTTTGGAACGAGGTAAGATCTGTACAAGCTTGGCAGCAGACAGTGGAACAGCGTCTGGCTTCCTGGCCGCCCGACGTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CCA 90 bp GCCTCTGCGGCATCGTCCAGCTGCTGGACGGAGGTTAAATACTGTTaGAGCAGAGTGTTGTCCTGCTCACTGGCTGAGCTCTCCCTACTG +
Preference number: 5 (lower is better)
Translates to: ASAASSSCWTEVKYC*SRVLSCSLAELSLL
Trigger: CAGTAGGGAGAGCTCAGCCAGTGAGCAGGACAACACTCTGCTCCAACAGTATTTAACCTCCGTCCAGCAGCTGGACGATGCCGCAGAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CCA 90 bp GCCACATCGTCAGAATCGGCCGCCTCTGCGGCATCGTCCAGCTGCTaGACGGAGGTTAAATACTGTTGGAGCAGAGTGTTGTCCTGCTCA +
Preference number: 5 (lower is better)
Translates to: ATSSESAASAASSSC*TEVKYCWSRVLSCS
Trigger: TGAGCAGGACAACACTCTGCTCCAACAGTATTTAACCTCCGTCCAGCAGCTGGACGATGCCGCAGAGGCGGCCGATTCTGACGATGTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CCA 90 bp ACATCAGCTTCACAGGGCAAGTTGGCACCTAATTTCTGCAGTCCCTaGCCTGACCAGTTCACCACTGATCCTTCTCCCGGAGCCAGAGCC +
Preference number: 5 (lower is better)
Translates to: TSASQGKLAPNFCSP*PDQFTTDPSPGARA
Trigger: GGCTCTGGCTCCGGGAGAAGGATCAGTGGTGAACTGGTCAGGCCAGGGACTGCAGAAATTAGGTGCCAACTTGCCCTGTGAAGCTGATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023270.14
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS TCA 90 bp GGCTTCCTCGCTGTTTGCTTCCGTACGAGACGCACTGTGTCCAGCTaGCTCAGGGAGAGATGTAAGACTGTGGGTATCCTCCTTCAAGGC +
Preference number: 5 (lower is better)
Translates to: GFLAVCFRTRRTVSS*LRERCKTVGILLQG
Trigger: GCCTTGAAGGAGGATACCCACAGTCTTACATCTCTCCCTGAGTCAGCTGGACACAGTGCGTCTCGTACGGAAGCAAACAGCGAGGAAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS-3UTR CAA 90 bp AAGGTCACGAGTGAAATAAGGACTGAGACACAGCTCCATGGGGCATGCACAGGGGCGTACGGTGCACCCTaGTCTCAACAGCAGCAAGAG +
Preference number: 5 (lower is better)
Translates to: KVTSEIRTETQLHGACTGAYGAP*SQQQQE
Trigger: CTCTTGCTGCTGTTGAGACAAGGGTGCACCGTACGC...CCCTGTGCATGCCCCATGGAGCTGTGTCTCAGTCCTTATTTCACTCGTGACCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CAA 90 bp AAGAAGCGCCTCGGCCTAGAAAGATGGGGGTCAGTTTCTCTCCAGGACTATGAGGCGCACCCCTTTGGCTaGCTGATTGTAGTTCCTGGT +
Preference number: 5 (lower is better)
Translates to: KKRLGLERWGSVSLQDYEAHPFG*LIVVPG
Trigger: ACCAGGAACTACAATCAGCAAGCCAAAGGGGTGCGC...CTCATAGTCCTGGAGAGAAACTGACCCCCATCTTTCTAGGCCGAGGCGCTTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CAA 90 bp AAGAAGCGCCTCGGCCTAGAAAGATGGGGGTCAGTTTCTCTCCAGGACTATGAGGGAAATAACGGGGGCTaGGGTGACGCCAGAGTACTT +
Preference number: 5 (lower is better)
Translates to: KKRLGLERWGSVSLQDYEGNNGG*GDARVL
Trigger: AAGTACTCTGGCGTCACCCAAGCCCCCGTTATTTCC...CTCATAGTCCTGGAGAGAAACTGACCCCCATCTTTCTAGGCCGAGGCGCTTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS GCA 90 bp AAGGTATGGACATCAGCTTCACAGGGCAAGTTGGCACCTAATTTCTaGAGTCCCTGGCCTGACCAGTTCACCACTGATCCTTCTCCCGGA +
Preference number: 5 (lower is better)
Translates to: KVWTSASQGKLAPNF*SPWPDQFTTDPSPG
Trigger: TCCGGGAGAAGGATCAGTGGTGAACTGGTCAGGCCAGGGACTGCAGAAATTAGGTGCCAACTTGCCCTGTGAAGCTGATGTCCATACCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023270.14
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS CCA 90 bp CGAGACGCACTGTGTCCAGCTGACTCAGGGAGAGATGTAAGACTGTaGGTATCCTCCTTCAAGGCAGCACTGATGATCACTGACTTGGGA +
Preference number: 5 (lower is better)
Translates to: RDALCPADSGRDVRL*VSSFKAALMITDLG
Trigger: TCCCAAGTCAGTGATCATCAGTGCTGCCTTGAAGGAGGATACCCACAGTCTTACATCTCTCCCTGAGTCAGCTGGACACAGTGCGTCTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS-3UTR CAA 90 bp AAGAAGCGCCTCGGCCTAGAAAGATGGGGGTCAGTTTCTCTCCAGGACTATGAGCTGGAATGGACGGGGTaGCCATCACACAAGGATTGT +
Preference number: 5 (lower is better)
Translates to: KKRLGLERWGSVSLQDYELEWTG*PSHKDC
Trigger: ACAATCCTTGTGTGATGGCAACCCCGTCCATTCCAG...CTCATAGTCCTGGAGAGAAACTGACCCCCATCTTTCTAGGCCGAGGCGCTTCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CAA 90 bp TGGGAGTCAGAGGCAAGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGCGATCTCCCTTTGCCTaGACTATAGAGCCACTCAGC +
Preference number: 5 (lower is better)
Translates to: WESEASRFLSSRPAWSTKRSPFA*TIEPLS
Trigger: GCTGAGTGGCTCTATAGTCAAGGCAAAGGGAGATCG...CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCTTGCCTCTGACTCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS GCA 90 bp ACCTCCGCACTTCATCTGTTAGGCAGACAATGTGCTCCTGCATTCTaGGTAGCCGGATTTCATAGCGCACCCCTTTGGCTTGCTGATTGT +
Preference number: 5 (lower is better)
Translates to: TSALHLLGRQCAPAF*VAGFHSAPLWLADC
Trigger: ACAATCAGCAAGCCAAAGGGGTGCGCTATGAAATCCGGCTACGCAGAATGCAGGAGCACATTGTCTGCCTAACAGATGAAGTGCGGAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CCA 90 bp TGTGCTCCTGCATTCTGCGTAGCCGGATTTCATAGCGCACCCCTTTaGCTTGCTGATTGTAGTTCCTGGTGTAAAAGCCTCTCCAACAGG +
Preference number: 5 (lower is better)
Translates to: CAPAFCVAGFHSAPL*LADCSSWCKSLSNR
Trigger: CCTGTTGGAGAGGCTTTTACACCAGGAACTACAATCAGCAAGCCAAAGGGGTGCGCTATGAAATCCGGCTACGCAGAATGCAGGAGCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS-3UTR CAA 90 bp AAGAAGCGCCTCGGCCTAGAAAGATGGGGGTCAGTTTCTCTCCAGGACTATGAGGCTTCACAGGGCAAGTaGGCACCTAATTTCTGCAGT +
Preference number: 5 (lower is better)
Translates to: KKRLGLERWGSVSLQDYEASQGK*APNFCS
Trigger: ACTGCAGAAATTAGGTGCCAACTTGCCCTGTGAAGC...CTCATAGTCCTGGAGAGAAACTGACCCCCATCTTTCTAGGCCGAGGCGCTTCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CAA 90 bp AAGGTCACGAGTGAAATAAGGACTGAGACACAGCTCCATGGGGCATGCACAGGGAGACAACTCTTCATCTaGGCTCTGGCTCATCAGCTG +
Preference number: 5 (lower is better)
Translates to: KVTSEIRTETQLHGACTGRQLFI*ALAHQL
Trigger: CAGCTGATGAGCCAGAGCCAAGATGAAGAGTTGTCT...CCCTGTGCATGCCCCATGGAGCTGTGTCTCAGTCCTTATTTCACTCGTGACCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CAA 90 bp TGGGAGTCAGAGGCAAGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGAAGGGTGACTTTATCTaGTCCCAAAGCAGCAGGCCT +
Preference number: 5 (lower is better)
Translates to: WESEASRFLSSRPAWSTKKGDFI*SQSSRP
Trigger: AGGCCTGCTGCTTTGGGACAAGATAAAGTCACCCTT...CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCTTGCCTCTGACTCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CAA 90 bp AAGAAGCGCCTCGGCCTAGAAAGATGGGGGTCAGTTTCTCTCCAGGACTATGAGCCTGACAGCCTCTTCTaGCACAAAAGTCTTCACACG +
Preference number: 5 (lower is better)
Translates to: KKRLGLERWGSVSLQDYEPDSLF*HKSLHT
Trigger: CGTGTGAAGACTTTTGTGCAAGAAGAGGCTGTCAGG...CTCATAGTCCTGGAGAGAAACTGACCCCCATCTTTCTAGGCCGAGGCGCTTCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CAA 90 bp ATGTATGTTGGTGTACCCATCATGTGTGTGCCTGGTGCCTGTGGAGGTCAGAAGGCTTCACAGGGCAAGTaGGCACCTAATTTCTGCAGT +
Preference number: 5 (lower is better)
Translates to: MYVGVPIMCVPGACGGQKASQGK*APNFCS
Trigger: ACTGCAGAAATTAGGTGCCAACTTGCCCTGTGAAGC...CTTCTGACCTCCACAGGCACCAGGCACACACATGATGGGTACACCAACATACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS-3UTR CAA 90 bp GCCAGGAGTTCAAGACCAACCCTAGACAACATAATGAGACCCTCACCTCAAAAACTGCAGACAGGGAACTaGCTCTGTCAGGGAGGAGTG +
Preference number: 5 (lower is better)
Translates to: ARSSRPTLDNIMRPSPQKLQTGN*LCQGGV
Trigger: CACTCCTCCCTGACAGAGCAAGTTCCCTGTCTGCAG...TTTTTGAGGTGAGGGTCTCATTATGTTGTCTAGGGTTGGTCTTGAACTCCTGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS TCA 90 bp CTCTGCTTGCTCAGAATCTTCTCGAGTTTGGCATCCTCTGCAGTTTaGAGACCCAGTGCAGAAGTAAGAGGACAGACTGTAGCCAGGTAC +
Preference number: 5 (lower is better)
Translates to: LCLLRIFSSLASSAV*RPSAEVRGQTVARY
Trigger: GTACCTGGCTACAGTCTGTCCTCTTACTTCTGCACTGGGTCTTCAAACTGCAGAGGATGCCAAACTCGAGAAGATTCTGAGCAAGCAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS GCA 90 bp CAGAATCTTCTCGAGTTTGGCATCCTCTGCAGTTTGAAGACCCAGTaGAGAAGTAAGAGGACAGACTGTAGCCAGGTACTGGACAAGCTG +
Preference number: 5 (lower is better)
Translates to: QNLLEFGILCSLKTQ*RSKRTDCSQVLDKL
Trigger: CAGCTTGTCCAGTACCTGGCTACAGTCTGTCCTCTTACTTCTGCACTGGGTCTTCAAACTGCAGAGGATGCCAAACTCGAGAAGATTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS GCA 90 bp CCTGGTGTAAAAGCCTCTCCAACAGGCCTGAAGCTTAGTGGCAGCTaGATTCAGTTTCTGAAGGGTGACTTTATCTTGTCCCAAAGCAGC +
Preference number: 5 (lower is better)
Translates to: PGVKASPTGLKLSGS*IQFLKGDFILSQSS
Trigger: GCTGCTTTGGGACAAGATAAAGTCACCCTTCAGAAACTGAATGCAGCTGCCACTAAGCTTCAGGCCTGTTGGAGAGGCTTTTACACCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS-3UTR CAA 90 bp TGGGAGTCAGAGGCAAGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGATGCCAACCCAAGAATaGATTTGGAGGACAGGTTCA +
Preference number: 5 (lower is better)
Translates to: WESEASRFLSSRPAWSTKMPTQE*IWRTGS
Trigger: TGAACCTGTCCTCCAAATCAATTCTTGGGTTGGCAT...CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCTTGCCTCTGACTCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CAA 90 bp AAGGTCACGAGTGAAATAAGGACTGAGACACAGCTCCATGGGGCATGCACAGGGCATAAAGACTTTTCCTaGTCCTTATCCTCGTCCTGG +
Preference number: 5 (lower is better)
Translates to: KVTSEIRTETQLHGACTGHKDFS*SLSSSW
Trigger: CCAGGACGAGGATAAGGACAAGGAAAAGTCTTTATG...CCCTGTGCATGCCCCATGGAGCTGTGTCTCAGTCCTTATTTCACTCGTGACCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS GCA 90 bp GTGAAACCTCTGCTTGCTCAGAATCTTCTCGAGTTTGGCATCCTCTaGAGTTTGAAGACCCAGTGCAGAAGTAAGAGGACAGACTGTAGC +
Preference number: 5 (lower is better)
Translates to: VKPLLAQNLLEFGIL*SLKTQCRSKRTDCS
Trigger: GCTACAGTCTGTCCTCTTACTTCTGCACTGGGTCTTCAAACTGCAGAGGATGCCAAACTCGAGAAGATTCTGAGCAAGCAGAGGTTTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CCA 90 bp TTTTATCCAGAATCAAGGTATGGACATCAGCTTCACAGGGCAAGTTaGCACCTAATTTCTGCAGTCCCTGGCCTGACCAGTTCACCACTG +
Preference number: 5 (lower is better)
Translates to: FYPESRYGHQLHRAS*HLISAVPGLTSSPL
Trigger: CAGTGGTGAACTGGTCAGGCCAGGGACTGCAGAAATTAGGTGCCAACTTGCCCTGTGAAGCTGATGTCCATACCTTGATTCTGGATAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023270.14
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS TCA 90 bp AGACTACAGTTTAGTTTGTCCTCATCTGTCTGTATGTCTTCCAGGTaGAGGTCATTCCGAGAATATCTTGCAGCGTGTGCAGCAGCTGGG +
Preference number: 5 (lower is better)
Translates to: RLQFSLSSSVCMSSR*RSFREYLAACAAAG
Trigger: CCCAGCTGCTGCACACGCTGCAAGATATTCTCGGAATGACCTTCACCTGGAAGACATACAGACAGATGAGGACAAACTAAACTGTAGTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS-3UTR CAA 90 bp AAGGTCACGAGTGAAATAAGGACTGAGACACAGCTCCATGGGGCATGCACAGGGAACTGGATTAACTGTTaGCATTTCTCTAGGTTCTCC +
Preference number: 5 (lower is better)
Translates to: KVTSEIRTETQLHGACTGNWINC*HFSRFS
Trigger: GGAGAACCTAGAGAAATGCAAACAGTTAATCCAGTT...CCCTGTGCATGCCCCATGGAGCTGTGTCTCAGTCCTTATTTCACTCGTGACCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CAA 90 bp AGGTGTTCTGCCTACATGTATGTTGGTGTACCCATCATGTGTGTGCCTGGTGCCATCTGGGGAATGTTATaGTCTGATAAGTCAAGGTGC +
Preference number: 5 (lower is better)
Translates to: RCSAYMYVGVPIMCVPGAIWGML*SDKSRC
Trigger: GCACCTTGACTTATCAGACAATAACATTCCCCAGAT...GGCACCAGGCACACACATGATGGGTACACCAACATACATGTAGGCAGAACACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS TCA 90 bp CAAACCCTGGAATGGACGGGGTTGCCATCACACAAGGATTGTTCATaGTTGACAACTGCTCCAGTTCACTTAAAGAGGCCAAAAACGAGA +
Preference number: 5 (lower is better)
Translates to: QTLEWTGLPSHKDCS*LTTAPVHLKRPKTR
Trigger: TCTCGTTTTTGGCCTCTTTAAGTGAACTGGAGCAGTTGTCAATCATGAACAATCCTTGTGTGATGGCAACCCCGTCCATTCCAGGGTTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS TCA 90 bp TCTGCTGCCAAGCTTGTACAGATCTTACCTCGTTCCAAAGGAACCTaGCAGCCTCTTCTTGCACAAAAGTCTTCACACGTTCTTCATCTC +
Preference number: 5 (lower is better)
Translates to: SAAKLVQILPRSKGT*QPLLAQKSSHVLHL
Trigger: GAGATGAAGAACGTGTGAAGACTTTTGTGCAAGAAGAGGCTGTCAGGTTCCTTTGGAACGAGGTAAGATCTGTACAAGCTTGGCAGCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS-3UTR CAA 90 bp AAGTGCTGTGATTACAAGTGTGTATCGCTGCTGGGCTGTGATGCTGCATGCCTTAGACTACAGTTTAGTTaGTCCTCATCTGTCTGTATG +
Preference number: 5 (lower is better)
Translates to: KCCDYKCVSLLGCDAACLRLQFS*SSSVCM
Trigger: CATACAGACAGATGAGGACAAACTAAACTGTAGTCT...AAGGCATGCAGCATCACAGCCCAGCAGCGATACACACTTGTAATCACAGCACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS TCA 90 bp TGTTATTGTCTGATAAGTCAAGGTGCTGAAGAGCCGTACAGCTATTaGCTTGCTCCATGGTCTTCAGATTATTGCCCGCTAAATTCAGCC +
Preference number: 5 (lower is better)
Translates to: CYCLISQGAEEPYSY*LAPWSSDYCPLNSA
Trigger: GGCTGAATTTAGCGGGCAATAATCTGAAGACCATGGAGCAAGTCAATAGCTGTACGGCTCTTCAGCACCTTGACTTATCAGACAATAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS TCA 90 bp ACATCACCTATCTGGGGAATGTTATTGTCTGATAAGTCAAGGTGCTaGAGAGCCGTACAGCTATTGACTTGCTCCATGGTCTTCAGATTA +
Preference number: 5 (lower is better)
Translates to: TSPIWGMLLSDKSRC*RAVQLLTCSMVFRL
Trigger: TAATCTGAAGACCATGGAGCAAGTCAATAGCTGTACGGCTCTTCAGCACCTTGACTTATCAGACAATAACATTCCCCAGATAGGTGATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS GCA 90 bp ATGGACGGGGTTGCCATCACACAAGGATTGTTCATGATTGACAACTaGTCCAGTTCACTTAAAGAGGCCAAAAACGAGATCTCATTTAAG +
Preference number: 5 (lower is better)
Translates to: MDGVAITQGLFMIDN*SSSLKEAKNEISFK
Trigger: CTTAAATGAGATCTCGTTTTTGGCCTCTTTAAGTGAACTGGAGCAGTTGTCAATCATGAACAATCCTTGTGTGATGGCAACCCCGTCCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS-3UTR CAA 90 bp TCTGCTCAAGATGTAGGGAAAATAGAGCTTCAGACTCCACTTCTAAGATTTGAAGCTTCACAGGGCAAGTaGGCACCTAATTTCTGCAGT +
Preference number: 5 (lower is better)
Translates to: SAQDVGKIELQTPLLRFEASQGK*APNFCS
Trigger: ACTGCAGAAATTAGGTGCCAACTTGCCCTGTGAAGC...TTCAAATCTTAGAAGTGGAGTCTGAAGCTCTATTTTCCCTACATCTTGAGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
CDS GCA 90 bp TGTACAGATCTTACCTCGTTCCAAAGGAACCTGACAGCCTCTTCTTaGACAAAAGTCTTCACACGTTCTTCATCTCTTTCTTTTCTCAAC +
Preference number: 5 (lower is better)
Translates to: CTDLTSFQRNLTASS*TKVFTRSSSLSFLN
Trigger: GTTGAGAAAAGAAAGAGATGAAGAACGTGTGAAGACTTTTGTGCAAGAAGAGGCTGTCAGGTTCCTTTGGAACGAGGTAAGATCTGTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS-3UTR CAA 90 bp AAGAGGGAATTACACGTCCTGGAACAAAGATTACAGATATTTGTTAGCCACAATGCTTCACAGGGCAAGTaGGCACCTAATTTCTGCAGT +
Preference number: 5 (lower is better)
Translates to: KRELHVLEQRLQIFVSHNASQGK*APNFCS
Trigger: ACTGCAGAAATTAGGTGCCAACTTGCCCTGTGAAGC...ATTGTGGCTAACAAATATCTGTAATCTTTGTTCCAGGACGTGTAATTCCCTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
CDS-3UTR CAA 90 bp TGTGCCGTGAAACAGTTTTGGTGCTACCTCAGTGAGATGTTTTTCTTTACCTGTATCTGGGGAATGTTATaGTCTGATAAGTCAAGGTGC +
Preference number: 5 (lower is better)
Translates to: CAVKQFWCYLSEMFFFTCIWGML*SDKSRC
Trigger: GCACCTTGACTTATCAGACAATAACATTCCCCAGAT...ACAGGTAAAGAAAAACATCTCACTGAGGTAGCACCAAAACTGTTTCACGGCACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023270.14
CDS-3UTR CAA 90 bp TTTTATGTATGTAGGTGTTCTGCCTACATGTATGTTGGTGTACCCATCATGTGTATCTGGGGAATGTTATaGTCTGATAAGTCAAGGTGC +
Preference number: 5 (lower is better)
Translates to: FYVCRCSAYMYVGVPIMCIWGML*SDKSRC
Trigger: GCACCTTGACTTATCAGACAATAACATTCCCCAGAT...ACACATGATGGGTACACCAACATACATGTAGGCAGAACACCTACATACATAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS-3UTR CAA 90 bp AAAGATTACAGATATTTGTTAGCCACAATATGGTACTCAAATCAAACCCAGGTCATCTGGGGAATGTTATaGTCTGATAAGTCAAGGTGC +
Preference number: 5 (lower is better)
Translates to: KDYRYLLATIWYSNQTQVIWGML*SDKSRC
Trigger: GCACCTTGACTTATCAGACAATAACATTCCCCAGAT...GACCTGGGTTTGATTTGAGTACCATATTGTGGCTAACAAATATCTGTAATCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000121129.8
ENSMUST00000122280.8
CDS TCA 72 bp CAGACAGGCTGCACAGTGACACCCACATGCAACCCCTaGAAGGCAGGGTCACACTCCGGAGGCTGCCCTTGG +
Preference number: 6 (lower is better)
Translates to: QTGCTVTPTCNP*KAGSHSGGCPW
Trigger: CCAAGGGCAGCCTCCGGAGTGTGACCCTGCCTTTCAGGGGTTGCATGTGGGTGTCACTGTGCAGCCTGTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS GCA 72 bp GAGTGTTGTCCTGCTCACTGGCTGAGCTCTCCCTACTaGAGTCACTGTGCTCCTCGGCTGTGGCCTCCGAGT +
Preference number: 6 (lower is better)
Translates to: ECCPAHWLSSPY*SHCAPRLWPPS
Trigger: ACTCGGAGGCCACAGCCGAGGAGCACAGTGACTGCAGTAGGGAGAGCTCAGCCAGTGAGCAGGACAACACTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS GCA 72 bp TCGTCAGAATCGGCCGCCTCTGCGGCATCGTCCAGCTaGTGGACGGAGGTTAAATACTGTTGGAGCAGAGTG +
Preference number: 6 (lower is better)
Translates to: SSESAASAASSS*WTEVKYCWSRV
Trigger: CACTCTGCTCCAACAGTATTTAACCTCCGTCCAGCAGCTGGACGATGCCGCAGAGGCGGCCGATTCTGACGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CAA 72 bp GCCCGGGGCTTGAGCACTCAGGCGTACGGTGCACCCTaGTCTCAACAGCAGCAAGAGGAGACAACTCTTCAT +
Preference number: 6 (lower is better)
Translates to: ARGLSTQAYGAP*SQQQQEETTLH
Trigger: ATGAAGAGTTGTCTCCTCTTGCTGCTGTTGAGACAAGGGTGCACCGTACGCCTGAGTGCTCAAGCCCCGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CAA 90 bp GGAAGTCTTGCCCGGGGCTTGAGCACTCAGGCGTACGGTGCACCCTaGTCTCAACAGCAGCAAGAGGAGACAACTCTTCATCTTGGCTCT +
Preference number: 6 (lower is better)
Translates to: GSLARGLSTQAYGAP*SQQQQEETTLHLGS
Trigger: AGAGCCAAGATGAAGAGTTGTCTCCTCTTGCTGCTGTTGAGACAAGGGTGCACCGTACGCCTGAGTGCTCAAGCCCCGGGCAAGACTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS TCA 72 bp GTGGGTATCCTCCTTCAAGGCAGCACTGATGATCACTaGCTTGGGACAAGGCAGCAGCCCAGCTGCCTCACT +
Preference number: 6 (lower is better)
Translates to: VGILLQGSTDDH*LGTRQQPSCLT
Trigger: AGTGAGGCAGCTGGGCTGCTGCCTTGTCCCAAGTCAGTGATCATCAGTGCTGCCTTGAAGGAGGATACCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CCA 72 bp TCAGAATCGGCCGCCTCTGCGGCATCGTCCAGCTGCTaGACGGAGGTTAAATACTGTTGGAGCAGAGTGTTG +
Preference number: 6 (lower is better)
Translates to: SESAASAASSSC*TEVKYCWSRVL
Trigger: CAACACTCTGCTCCAACAGTATTTAACCTCCGTCCAGCAGCTGGACGATGCCGCAGAGGCGGCCGATTCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CCA 72 bp TCACAGGGCAAGTTGGCACCTAATTTCTGCAGTCCCTaGCCTGACCAGTTCACCACTGATCCTTCTCCCGGA +
Preference number: 6 (lower is better)
Translates to: SQGKLAPNFCSP*PDQFTTDPSPG
Trigger: TCCGGGAGAAGGATCAGTGGTGAACTGGTCAGGCCAGGGACTGCAGAAATTAGGTGCCAACTTGCCCTGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023270.14
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS CCA 72 bp GTAAGAGGACAGACTGTAGCCAGGTACTGGACAAGCTaGATGTGCTGCCCAGGCCGATACGATCTCCCTTTG +
Preference number: 6 (lower is better)
Translates to: VRGQTVARYWTS*MCCPGRYDLPL
Trigger: CAAAGGGAGATCGTATCGGCCTGGGCAGCACATCCAGCTTGTCCAGTACCTGGCTACAGTCTGTCCTCTTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CCA 72 bp GCATCGTCCAGCTGCTGGACGGAGGTTAAATACTGTTaGAGCAGAGTGTTGTCCTGCTCACTGGCTGAGCTC +
Preference number: 6 (lower is better)
Translates to: ASSSCWTEVKYC*SRVLSCSLAEL
Trigger: GAGCTCAGCCAGTGAGCAGGACAACACTCTGCTCCAACAGTATTTAACCTCCGTCCAGCAGCTGGACGATGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CAA 90 bp AGGGAAATTTCTCTGAAGTGGCAGGAGACATGGCTTCCTCGCTGTTaGCTTCCGTACGAGACGCACTGTGTCCAGCTGACTCAGGGAGAG +
Preference number: 6 (lower is better)
Translates to: REISLKWQETWLPRC*LPYETHCVQLTQGE
Trigger: CTCTCCCTGAGTCAGCTGGACACAGTGCGTCTCGTACGGAAGCAAACAGCGAGGAAGCCATGTCTCCTGCCACTTCAGAGAAATTTCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS TCA 72 bp GCTGTTTGCTTCCGTACGAGACGCACTGTGTCCAGCTaGCTCAGGGAGAGATGTAAGACTGTGGGTATCCTC +
Preference number: 6 (lower is better)
Translates to: AVCFRTRRTVSS*LRERCKTVGIL
Trigger: GAGGATACCCACAGTCTTACATCTCTCCCTGAGTCAGCTGGACACAGTGCGTCTCGTACGGAAGCAAACAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS GCA 72 bp GCTGGATGTGCTGCCCAGGCCGATACGATCTCCCTTTaGCTTGACTATAGAGCCACTCAGCCTTCAGACTTT +
Preference number: 6 (lower is better)
Translates to: AGCAAQADTISL*LDYRATQPSDF
Trigger: AAAGTCTGAAGGCTGAGTGGCTCTATAGTCAAGGCAAAGGGAGATCGTATCGGCCTGGGCAGCACATCCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CAA 72 bp TGCTGGACGGAGGTTAAATACTGTTGGAGCAGAGTGTaGTCCTGCTCACTGGCTGAGCTCTCCCTACTGCAG +
Preference number: 6 (lower is better)
Translates to: CWTEVKYCWSRV*SCSLAELSLLQ
Trigger: CTGCAGTAGGGAGAGCTCAGCCAGTGAGCAGGACAACACTCTGCTCCAACAGTATTTAACCTCCGTCCAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CAA 90 bp AGACTGTGGGTATCCTCCTTCAAGGCAGCACTGATGATCACTGACTaGGGACAAGGCAGCAGCCCAGCTGCCTCACTTACTTCTGTACTG +
Preference number: 6 (lower is better)
Translates to: RLWVSSFKAALMITD*GQGSSPAASLTSVL
Trigger: CAGTACAGAAGTAAGTGAGGCAGCTGGGCTGCTGCCTTGTCCCAAGTCAGTGATCATCAGTGCTGCCTTGAAGGAGGATACCCACAGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS GCA 72 bp ACATCAGCTTCACAGGGCAAGTTGGCACCTAATTTCTaGAGTCCCTGGCCTGACCAGTTCACCACTGATCCT +
Preference number: 6 (lower is better)
Translates to: TSASQGKLAPNF*SPWPDQFTTDP
Trigger: AGGATCAGTGGTGAACTGGTCAGGCCAGGGACTGCAGAAATTAGGTGCCAACTTGCCCTGTGAAGCTGATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023270.14
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS CCA 72 bp ACACCAGCTGACGATGAACGGCCGATAGTCAAACCCTaGAATGGACGGGGTTGCCATCACACAAGGATTGTT +
Preference number: 6 (lower is better)
Translates to: TPADDERPIVKP*NGRGCHHTRIV
Trigger: AACAATCCTTGTGTGATGGCAACCCCGTCCATTCCAGGGTTTGACTATCGGCCGTTCATCGTCAGCTGGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CCA 72 bp ACCCAAGAATTGATTTGGAGGACAGGTTCACTTTCCTaGAAGTCTTGCCCGGGGCTTGAGCACTCAGGCGTA +
Preference number: 6 (lower is better)
Translates to: TQELIWRTGSLS*KSCPGLEHSGV
Trigger: TACGCCTGAGTGCTCAAGCCCCGGGCAAGACTTCCAGGAAAGTGAACCTGTCCTCCAAATCAATTCTTGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CAA 72 bp GATGTGCTGCCCAGGCCGATACGATCTCCCTTTGCCTaGACTATAGAGCCACTCAGCCTTCAGACTTTCCTT +
Preference number: 6 (lower is better)
Translates to: DVLPRPIRSPFA*TIEPLSLQTFL
Trigger: AAGGAAAGTCTGAAGGCTGAGTGGCTCTATAGTCAAGGCAAAGGGAGATCGTATCGGCCTGGGCAGCACATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CAA 72 bp GGAAGCCAGACGCTGTTCCACTGTCTGCTGCCAAGCTaGTACAGATCTTACCTCGTTCCAAAGGAACCTGAC +
Preference number: 6 (lower is better)
Translates to: GSQTLFHCLLPS*YRSYLVPKEPD
Trigger: GTCAGGTTCCTTTGGAACGAGGTAAGATCTGTACAAGCTTGGCAGCAGACAGTGGAACAGCGTCTGGCTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CAA 90 bp GACAAGCTGGATGTGCTGCCCAGGCCGATACGATCTCCCTTTGCCTaGACTATAGAGCCACTCAGCCTTCAGACTTTCCTTCTGAGAAAT +
Preference number: 6 (lower is better)
Translates to: DKLDVLPRPIRSPFA*TIEPLSLQTFLLRN
Trigger: ATTTCTCAGAAGGAAAGTCTGAAGGCTGAGTGGCTCTATAGTCAAGGCAAAGGGAGATCGTATCGGCCTGGGCAGCACATCCAGCTTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS TCA 72 bp TGTCCTTATCCTCGTCCTGGTTTTCCAGCCCTTTTGTaGACTCATCTGCACCATCGTCATCCTCTAGGCCCA +
Preference number: 6 (lower is better)
Translates to: CPYPRPGFPALL*THLHHRHPLGP
Trigger: TGGGCCTAGAGGATGACGATGGTGCAGATGAGTTCACAAAAGGGCTGGAAAACCAGGACGAGGATAAGGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS GCA 72 bp CTCGAGTTTGGCATCCTCTGCAGTTTGAAGACCCAGTaGAGAAGTAAGAGGACAGACTGTAGCCAGGTACTG +
Preference number: 6 (lower is better)
Translates to: LEFGILCSLKTQ*RSKRTDCSQVL
Trigger: CAGTACCTGGCTACAGTCTGTCCTCTTACTTCTGCACTGGGTCTTCAAACTGCAGAGGATGCCAAACTCGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS GCA 72 bp CTTCATCTGTTAGGCAGACAATGTGCTCCTGCATTCTaGGTAGCCGGATTTCATAGCGCACCCCTTTGGCTT +
Preference number: 6 (lower is better)
Translates to: LHLLGRQCAPAF*VAGFHSAPLWL
Trigger: AAGCCAAAGGGGTGCGCTATGAAATCCGGCTACGCAGAATGCAGGAGCACATTGTCTGCCTAACAGATGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CCA 72 bp GAATCAAGGTATGGACATCAGCTTCACAGGGCAAGTTaGCACCTAATTTCTGCAGTCCCTGGCCTGACCAGT +
Preference number: 6 (lower is better)
Translates to: ESRYGHQLHRAS*HLISAVPGLTS
Trigger: ACTGGTCAGGCCAGGGACTGCAGAAATTAGGTGCCAACTTGCCCTGTGAAGCTGATGTCCATACCTTGATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023270.14
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS CCA 72 bp CTGTGTCCAGCTGACTCAGGGAGAGATGTAAGACTGTaGGTATCCTCCTTCAAGGCAGCACTGATGATCACT +
Preference number: 6 (lower is better)
Translates to: LCPADSGRDVRL*VSSFKAALMIT
Trigger: AGTGATCATCAGTGCTGCCTTGAAGGAGGATACCCACAGTCTTACATCTCTCCCTGAGTCAGCTGGACACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CCA 72 bp GCATTCTGCGTAGCCGGATTTCATAGCGCACCCCTTTaGCTTGCTGATTGTAGTTCCTGGTGTAAAAGCCTC +
Preference number: 6 (lower is better)
Translates to: AFCVAGFHSAPL*LADCSSWCKSL
Trigger: GAGGCTTTTACACCAGGAACTACAATCAGCAAGCCAAAGGGGTGCGCTATGAAATCCGGCTACGCAGAATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CAA 72 bp AGAATCAAGGTATGGACATCAGCTTCACAGGGCAAGTaGGCACCTAATTTCTGCAGTCCCTGGCCTGACCAG +
Preference number: 6 (lower is better)
Translates to: RIKVWTSASQGK*APNFCSPWPDQ
Trigger: CTGGTCAGGCCAGGGACTGCAGAAATTAGGTGCCAACTTGCCCTGTGAAGCTGATGTCCATACCTTGATTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023270.14
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS CAA 90 bp CCTCTGCTTGCTCAGAATCTTCTCGAGTTTGGCATCCTCTGCAGTTaGAAGACCCAGTGCAGAAGTAAGAGGACAGACTGTAGCCAGGTA +
Preference number: 6 (lower is better)
Translates to: PLLAQNLLEFGILCS*KTQCRSKRTDCSQV
Trigger: TACCTGGCTACAGTCTGTCCTCTTACTTCTGCACTGGGTCTTCAAACTGCAGAGGATGCCAAACTCGAGAAGATTCTGAGCAAGCAGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CCA 72 bp GGTGAAACCTCTGCTTGCTCAGAATCTTCTCGAGTTTaGCATCCTCTGCAGTTTGAAGACCCAGTGCAGAAG +
Preference number: 6 (lower is better)
Translates to: GETSACSESSRV*HPLQFEDPVQK
Trigger: CTTCTGCACTGGGTCTTCAAACTGCAGAGGATGCCAAACTCGAGAAGATTCTGAGCAAGCAGAGGTTTCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS TCA 72 bp TGGCTAATTTCATCCTGTGAAGTAGAGGCCACTCTATaGGTCTCACTGTCAGAGGAGGCGTCAAACCTTTCC +
Preference number: 6 (lower is better)
Translates to: WLISSCEVEATL*VSLSEEASNLS
Trigger: GGAAAGGTTTGACGCCTCCTCTGACAGTGAGACTCATAGAGTGGCCTCTACTTCACAGGATGAAATTAGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CCA 72 bp TTCAGATTATTGCCCGCTAAATTCAGCCACTCCAAATaGACTAGGTCCTTCAGGCCTTCCACGCAGCCAATA +
Preference number: 6 (lower is better)
Translates to: FRLLPAKFSHSK*TRSFRPSTQPI
Trigger: TATTGGCTGCGTGGAAGGCCTGAAGGACCTAGTCCATTTGGAGTGGCTGAATTTAGCGGGCAATAATCTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS CAA 72 bp GCTCAGAATCTTCTCGAGTTTGGCATCCTCTGCAGTTaGAAGACCCAGTGCAGAAGTAAGAGGACAGACTGT +
Preference number: 6 (lower is better)
Translates to: AQNLLEFGILCS*KTQCRSKRTDC
Trigger: ACAGTCTGTCCTCTTACTTCTGCACTGGGTCTTCAAACTGCAGAGGATGCCAAACTCGAGAAGATTCTGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CAA 90 bp TTTTTATCCAGAATCAAGGTATGGACATCAGCTTCACAGGGCAAGTaGGCACCTAATTTCTGCAGTCCCTGGCCTGACCAGTTCACCACT +
Preference number: 6 (lower is better)
Translates to: FLSRIKVWTSASQGK*APNFCSPWPDQFTT
Trigger: AGTGGTGAACTGGTCAGGCCAGGGACTGCAGAAATTAGGTGCCAACTTGCCCTGTGAAGCTGATGTCCATACCTTGATTCTGGATAAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023270.14
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS TCA 72 bp CTGATAAGTCAAGGTGCTGAAGAGCCGTACAGCTATTaGCTTGCTCCATGGTCTTCAGATTATTGCCCGCTA +
Preference number: 6 (lower is better)
Translates to: LISQGAEEPYSY*LAPWSSDYCPL
Trigger: TAGCGGGCAATAATCTGAAGACCATGGAGCAAGTCAATAGCTGTACGGCTCTTCAGCACCTTGACTTATCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS TCA 72 bp CTCAGAATCTTCTCGAGTTTGGCATCCTCTGCAGTTTaGAGACCCAGTGCAGAAGTAAGAGGACAGACTGTA +
Preference number: 6 (lower is better)
Translates to: LRIFSSLASSAV*RPSAEVRGQTV
Trigger: TACAGTCTGTCCTCTTACTTCTGCACTGGGTCTTCAAACTGCAGAGGATGCCAAACTCGAGAAGATTCTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS TCA 72 bp AAGGCAGCAGCCCAGCTGCCTCACTTACTTCTGTACTaGTCTTACGTTTCAGCATTTCAACACAACTCTCAC +
Preference number: 6 (lower is better)
Translates to: KAAAQLPHLLLY*SYVSAFQHNSH
Trigger: GTGAGAGTTGTGTTGAAATGCTGAAACGTAAGATCAGTACAGAAGTAAGTGAGGCAGCTGGGCTGCTGCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS TCA 72 bp CTGACAATTCTCTGGCGTCTGGCTAATTTCATCCTGTaGAGTAGAGGCCACTCTATGAGTCTCACTGTCAGA +
Preference number: 6 (lower is better)
Translates to: LTILWRLANFIL*SRGHSMSLTVR
Trigger: TCTGACAGTGAGACTCATAGAGTGGCCTCTACTTCACAGGATGAAATTAGCCAGACGCCAGAGAATTGTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CAA 72 bp GTCAGTTTGGCCACACCCATCATCCGTACCAAGCGATaGTTAGCCACTGACAACTGGATTAACTGTTTGCAT +
Preference number: 6 (lower is better)
Translates to: VSLATPIIRTKR*LATDNWINCLH
Trigger: ATGCAAACAGTTAATCCAGTTGTCAGTGGCTAACAATCGCTTGGTACGGATGATGGGTGTGGCCAAACTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023270.14
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS TCA 72 bp ATCTGGGGAATGTTATTGTCTGATAAGTCAAGGTGCTaGAGAGCCGTACAGCTATTGACTTGCTCCATGGTC +
Preference number: 6 (lower is better)
Translates to: IWGMLLSDKSRC*RAVQLLTCSMV
Trigger: GACCATGGAGCAAGTCAATAGCTGTACGGCTCTTCAGCACCTTGACTTATCAGACAATAACATTCCCCAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS GCA 72 bp TATGTCTTCCAGGTGAAGGTCATTCCGAGAATATCTTaGAGCGTGTGCAGCAGCTGGGAAGTTATTCTTAAC +
Preference number: 6 (lower is better)
Translates to: YVFQVKVIPRIS*SVCSSWEVILN
Trigger: GTTAAGAATAACTTCCCAGCTGCTGCACACGCTGCAAGATATTCTCGGAATGACCTTCACCTGGAAGACATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CCA 72 bp AGGGTGACTTTATCTTGTCCCAAAGCAGCAGGCCTCTaGGTCAAAATTCTACAGGGAAATTTCTCTGAAGTG +
Preference number: 6 (lower is better)
Translates to: RVTLSCPKAAGL*VKILQGNFSEV
Trigger: CACTTCAGAGAAATTTCCCTGTAGAATTTTGACCCAGAGGCCTGCTGCTTTGGGACAAGATAAAGTCACCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CAA 72 bp GTACAGCTATTGACTTGCTCCATGGTCTTCAGATTATaGCCCGCTAAATTCAGCCACTCCAAATGGACTAGG +
Preference number: 6 (lower is better)
Translates to: VQLLTCSMVFRL*PAKFSHSKWTR
Trigger: CCTAGTCCATTTGGAGTGGCTGAATTTAGCGGGCAATAATCTGAAGACCATGGAGCAAGTCAATAGCTGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
ENSMUST00000121129.8
ENSMUST00000121703.3
ENSMUST00000122280.8
CDS CAA 72 bp ATCATCATTACTGCTGATGCCAACCCAAGAATTGATTaGGAGGACAGGTTCACTTTCCTGGAAGTCTTGCCC +
Preference number: 6 (lower is better)
Translates to: IIITADANPRID*EDRFTFLEVLP
Trigger: GGGCAAGACTTCCAGGAAAGTGAACCTGTCCTCCAAATCAATTCTTGGGTTGGCATCAGCAGTAATGATGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS TCA 72 bp TTTAGTTTGTCCTCATCTGTCTGTATGTCTTCCAGGTaGAGGTCATTCCGAGAATATCTTGCAGCGTGTGCA +
Preference number: 6 (lower is better)
Translates to: FSLSSSVCMSSR*RSFREYLAACA
Trigger: TGCACACGCTGCAAGATATTCTCGGAATGACCTTCACCTGGAAGACATACAGACAGATGAGGACAAACTAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS TCA 72 bp AAGCTTGTACAGATCTTACCTCGTTCCAAAGGAACCTaGCAGCCTCTTCTTGCACAAAAGTCTTCACACGTT +
Preference number: 6 (lower is better)
Translates to: KLVQILPRSKGT*QPLLAQKSSHV
Trigger: AACGTGTGAAGACTTTTGTGCAAGAAGAGGCTGTCAGGTTCCTTTGGAACGAGGTAAGATCTGTACAAGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS GCA 72 bp CTTACCTCGTTCCAAAGGAACCTGACAGCCTCTTCTTaGACAAAAGTCTTCACACGTTCTTCATCTCTTTCT +
Preference number: 6 (lower is better)
Translates to: LTSFQRNLTASS*TKVFTRSSSLS
Trigger: AGAAAGAGATGAAGAACGTGTGAAGACTTTTGTGCAAGAAGAGGCTGTCAGGTTCCTTTGGAACGAGGTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CAA 72 bp TCTTACCTCGTTCCAAAGGAACCTGACAGCCTCTTCTaGCACAAAAGTCTTCACACGTTCTTCATCTCTTTC +
Preference number: 6 (lower is better)
Translates to: SYLVPKEPDSLF*HKSLHTFFISF
Trigger: GAAAGAGATGAAGAACGTGTGAAGACTTTTGTGCAAGAAGAGGCTGTCAGGTTCCTTTGGAACGAGGTAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS GCA 72 bp GTTGCCATCACACAAGGATTGTTCATGATTGACAACTaGTCCAGTTCACTTAAAGAGGCCAAAAACGAGATC +
Preference number: 6 (lower is better)
Translates to: VAITQGLFMIDN*SSSLKEAKNEI
Trigger: GATCTCGTTTTTGGCCTCTTTAAGTGAACTGGAGCAGTTGTCAATCATGAACAATCCTTGTGTGATGGCAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8
CDS CAA 90 bp TTGTACAGATCTTACCTCGTTCCAAAGGAACCTGACAGCCTCTTCTaGCACAAAAGTCTTCACACGTTCTTCATCTCTTTCTTTTCTCAA +
Preference number: 6 (lower is better)
Translates to: LYRSYLVPKEPDSLF*HKSLHTFFISFFSQ
Trigger: TTGAGAAAAGAAAGAGATGAAGAACGTGTGAAGACTTTTGTGCAAGAAGAGGCTGTCAGGTTCCTTTGGAACGAGGTAAGATCTGTACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023270.14
ENSMUST00000117468.8
ENSMUST00000118500.8