Pregenerated sensors for CCT6A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029447Ensembl transcript IDs: ENSMUST00000201414.5
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | ATTTCAAATACATCCACAACAAATTATTCTTTCGACCTGGGGTCTCCTGTAGCCGGGTTGAAAAAGAGCTaGTTTGAGTGTCTTCAGATA | + |
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Preference number: 2 (lower is better) Translates to: ISNTSTTNYSFDLGSPVAGLKKS*FECLQI Trigger: TATCTGAAGACACTCAAAGCAGCTCTTTTTCAACCC...GGCTACAGGAGACCCCAGGTCGAAAGAATAATTTGTTGTGGATGTATTTGAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| 3UTR-3UTR TCA 90 bp | GACATTATGAAACCCATAAATTACCCAGATGTGTTTTACACTGGCAAGGATCTTTCTTGTTCAGTGGGTTaGAAAAGAGCTGCTTTGAGT | + |
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Preference number: 2 (lower is better) Translates to: DIMKPINYPDVFYTGKDLSCSVG*KRAALS Trigger: ACTCAAAGCAGCTCTTTTTCAACCCACTGAACAAGA...AAGATCCTTGCCAGTGTAAAACACATCTGGGTAATTTATGGGTTTCATAATGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| 3UTR-3UTR TCA 90 bp | ATTATGAAACCCATAAATTACCCAGATGTGTTTTACACTGGCAAGGATCTTACAGAAAAAGAGCTGCTTTaGGTGTCTTCAGATACTCAA | + |
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Preference number: 2 (lower is better) Translates to: IMKPINYPDVFYTGKDLTEKELL*VSSDTQ Trigger: TTGAGTATCTGAAGACACTCAAAGCAGCTCTTTTTC...TGTAAGATCCTTGCCAGTGTAAAACACATCTGGGTAATTTATGGGTTTCATAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| 3UTR-3UTR CCA 90 bp | ATGAAACCCATAAATTACCCAGATGTGTTTTACACTGGCAAGGATCTTACATGTAAACATCTTGTTCAGTaGGTTGAAAAAGAGCTGCTT | + |
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Preference number: 2 (lower is better) Translates to: MKPINYPDVFYTGKDLTCKHLVQ*VEKELL Trigger: AAGCAGCTCTTTTTCAACCCACTGAACAAGATGTTT...ACATGTAAGATCCTTGCCAGTGTAAAACACATCTGGGTAATTTATGGGTTTCAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| 3UTR CCA 72 bp | TATGAAACCCATAAATTACCCAGATGTGTTTTACACTaGCAAGGATCTTACATGTTTAACAGGGAGTTGGCT | + |
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Preference number: 3 (lower is better) Translates to: YETHKLPRCVLH*QGSYMFNRELA Trigger: AGCCAACTCCCTGTTAAACATGTAAGATCCTTGCCAGTGTAAAACACATCTGGGTAATTTATGGGTTTCATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| 3UTR CCA 72 bp | TACACTGGCAAGGATCTTACATGTTTAACAGGGAGTTaGCTGGATAATTTCAAATACATCCACAACAAATTA | + |
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Preference number: 3 (lower is better) Translates to: YTGKDLTCLTGS*LDNFKYIHNKL Trigger: TAATTTGTTGTGGATGTATTTGAAATTATCCAGCCAACTCCCTGTTAAACATGTAAGATCCTTGCCAGTGTA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR TCA 90 bp | CATTACAAACTTTCAAAGAACACTTACGGAACAAGGGTAGACAACATGCTTATCGGCCCCGAGCCGCGCTaGTGTTCACCGCCAGCGCTG | + |
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Preference number: 4 (lower is better) Translates to: HYKLSKNTYGTRVDNMLIGPEPR*CSPPAL Trigger: CAGCGCTGGCGGTGAACATCAGCGCGGCTCGGGGCC...GATAAGCATGTTGTCTACCCTTGTTCCGTAAGTGTTCTTTGAAAGTTTGTAATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR GCA 90 bp | GGAGAAAACCATTACAAACTTTCAAAGAACACTTACGGAACAAGGGTAGACAACGTCCTCAGAACATCCTaGAGGCCCCGAGCCGCGCTG | + |
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Preference number: 4 (lower is better) Translates to: GENHYKLSKNTYGTRVDNVLRTS*RPRAAL Trigger: CAGCGCGGCTCGGGGCCTGCAGGATGTTCTGAGGAC...GTTGTCTACCCTTGTTCCGTAAGTGTTCTTTGAAAGTTTGTAATGGTTTTCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR GCA 90 bp | GACATTATGAAACCCATAAATTACCCAGATGTGTTTTACACTGGCAAGGATCTTTTCTCCTCTTGGCTCTaGGCAGAGCTACGATCCCTT | + |
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Preference number: 4 (lower is better) Translates to: DIMKPINYPDVFYTGKDLFSSWL*AELRSL Trigger: AAGGGATCGTAGCTCTGCGCAGAGCCAAGAGGAGAA...AAGATCCTTGCCAGTGTAAAACACATCTGGGTAATTTATGGGTTTCATAATGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR GCA 90 bp | GTCACCATGCCTTATTTAGGAGAAAACCATTACAAACTTTCAAAGAACACTTACCCATCGGCTCACCTGTaGTCAGATCCACACCTACGA | + |
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Preference number: 4 (lower is better) Translates to: VTMPYLGENHYKLSKNTYPSAHL*SDPHLR Trigger: TCGTAGGTGTGGATCTGAGCACAGGTGAGCCGATGG...GTAAGTGTTCTTTGAAAGTTTGTAATGGTTTTCTCCTAAATAAGGCATGGTGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR CCA 90 bp | GGAACAAGGGTAGACAACATGCTTATCTTATGTAATTTTTGTATCGGTGTAGCTCGACCAGGAGAATGTTaGTGGCGATCACAGTACAGG | + |
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Preference number: 4 (lower is better) Translates to: GTRVDNMLILCNFCIGVARPGEC*WRSQYR Trigger: CCTGTACTGTGATCGCCACCAACATTCTCCTGGTCG...AGCTACACCGATACAAAAATTACATAAGATAAGCATGTTGTCTACCCTTGTTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR GCA 90 bp | TGGATAATTTCAAATACATCCACAACAAATTATTCTTTCGACCTGGGGTCTCCTGGCTGTAGCCACTTTTaGTATCAAAGAGGCTGTTGG | + |
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Preference number: 4 (lower is better) Translates to: WIISNTSTTNYSFDLGSPGCSHF*YQRGCW Trigger: CCAACAGCCTCTTTGATAGCAAAAGTGGCTACAGCC...AGGAGACCCCAGGTCGAAAGAATAATTTGTTGTGGATGTATTTGAAATTATCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR GCA 90 bp | ATTTCAAATACATCCACAACAAATTATTCTTTCGACCTGGGGTCTCCTGTAGCCTTCCAGAAATTGGAGTaGCTTTTCTTTTGCCGCTTC | + |
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Preference number: 4 (lower is better) Translates to: ISNTSTTNYSFDLGSPVAFQKLE*LFFCRF Trigger: GAAGCGGCAAAAGAAAAGGCACTCCAATTTCTGGAA...GGCTACAGGAGACCCCAGGTCGAAAGAATAATTTGTTGTGGATGTATTTGAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR TCA 90 bp | GCATGTGTCACCATGCCTTATTTAGGAGAAAACCATTACAAACTTTCAAAGAACCTCTTATTGCATCCTTaGTTTGAGTCAGTGTGTGCT | + |
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Preference number: 4 (lower is better) Translates to: ACVTMPYLGENHYKLSKNLLLHP*FESVCA Trigger: AGCACACACTGACTCAAATCAAGGATGCAATAAGAG...GTTCTTTGAAAGTTTGTAATGGTTTTCTCCTAAATAAGGCATGGTGACACATGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR TCA 90 bp | TGGCTGGATAATTTCAAATACATCCACAACAAATTATTCTTTCGACCTGGGGTCGTTATTATTCTTGGGTaGAGACCTTCAGAAATGTAC | + |
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Preference number: 4 (lower is better) Translates to: WLDNFKYIHNKLFFRPGVVIILG*RPSEMY Trigger: GTACATTTCTGAAGGTCTTCACCCAAGAATAATAAC...GACCCCAGGTCGAAAGAATAATTTGTTGTGGATGTATTTGAAATTATCCAGCCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR TCA 90 bp | ATTATGAAACCCATAAATTACCCAGATGTGTTTTACACTGGCAAGGATCTTACAGGGTCAATCCCCTTTTaGTTAATAACGACAAATCCT | + |
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Preference number: 4 (lower is better) Translates to: IMKPINYPDVFYTGKDLTGSIPF*LITTNP Trigger: AGGATTTGTCGTTATTAATCAAAAGGGGATTGACCC...TGTAAGATCCTTGCCAGTGTAAAACACATCTGGGTAATTTATGGGTTTCATAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR GCA 90 bp | TGTGTCACCATGCCTTATTTAGGAGAAAACCATTACAAACTTTCAAAGAACACTCAAGCCATCTCTTATTaGATCCTTGATTTGAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: CVTMPYLGENHYKLSKNTQAISY*ILDLSQ Trigger: CTGACTCAAATCAAGGATGCAATAAGAGATGGCTTG...AGTGTTCTTTGAAAGTTTGTAATGGTTTTCTCCTAAATAAGGCATGGTGACACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS GCA 90 bp | AGTTATCCCACACACCCATCTCTGCAGCCACCATCGGCTCACCTGTaGTCAGATCCACACCTACGAGCTGGCCGGATTCCGAATGTTCAG | + |
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Preference number: 5 (lower is better) Translates to: SYPTHPSLQPPSAHL*SDPHLRAGRIPNVQ Trigger: CTGAACATTCGGAATCCGGCCAGCTCGTAGGTGTGGATCTGAGCACAGGTGAGCCGATGGTGGCTGCAGAGATGGGTGTGTGGGATAACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR CAA 90 bp | CATTACAAACTTTCAAAGAACACTTACGGAACAAGGGTAGACAACATGCTTATCCCCTTAGGCCCCAAGTaGGTCCTCAGAACATCCTGC | + |
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Preference number: 5 (lower is better) Translates to: HYKLSKNTYGTRVDNMLIPLGPK*VLRTSC Trigger: GCAGGATGTTCTGAGGACCAACTTGGGGCCTAAGGG...GATAAGCATGTTGTCTACCCTTGTTCCGTAAGTGTTCTTTGAAAGTTTGTAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR CAA 90 bp | AACATCTTGTTCAGTGGGTTGAAAAAGAGCTGCTTTGAGTGTCTTCAGATACTCTTTTGCGCAAGAACCTaGGGAATGATGAGCAAGGCA | + |
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Preference number: 5 (lower is better) Translates to: NILFSGLKKSCFECLQILFCART*GMMSKA Trigger: TGCCTTGCTCATCATTCCCAAGGTTCTTGCGCAAAA...GAGTATCTGAAGACACTCAAAGCAGCTCTTTTTCAACCCACTGAACAAGATGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR CAA 90 bp | CATTACAAACTTTCAAAGAACACTTACGGAACAAGGGTAGACAACATGCTTATCTCGACCAGGAGAATGTaGGTGGCGATCACAGTACAG | + |
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Preference number: 5 (lower is better) Translates to: HYKLSKNTYGTRVDNMLISTRRM*VAITVQ Trigger: CTGTACTGTGATCGCCACCAACATTCTCCTGGTCGA...GATAAGCATGTTGTCTACCCTTGTTCCGTAAGTGTTCTTTGAAAGTTTGTAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR CAA 90 bp | ATTATGAAACCCATAAATTACCCAGATGTGTTTTACACTGGCAAGGATCTTACAGGAGTGCCTTTTCTTTaGCCGCTTCAAAACCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: IMKPINYPDVFYTGKDLTGVPFL*PLQNLQ Trigger: CTGAAGGTTTTGAAGCGGCAAAAGAAAAGGCACTCC...TGTAAGATCCTTGCCAGTGTAAAACACATCTGGGTAATTTATGGGTTTCATAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR CAA 90 bp | AGATGTGTTTTACACTGGCAAGGATCTTACATGTTTAACAGGGAGTTGGCTGGAATCTCTTTGCTTACTTaGACTTGTTCCAGAAATTGG | + |
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Preference number: 5 (lower is better) Translates to: RCVLHWQGSYMFNRELAGISLLT*TCSRNW Trigger: CCAATTTCTGGAACAAGTCAAAGTAAGCAAAGAGAT...TCCAGCCAACTCCCTGTTAAACATGTAAGATCCTTGCCAGTGTAAAACACATCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR CAA 90 bp | GGAACAAGGGTAGACAACATGCTTATCTTATGTAATTTTTGTATCGGTGTAGCTTGTTGGGTGTTGAATTaGCATTTCATGAAGCAGCAC | + |
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Preference number: 5 (lower is better) Translates to: GTRVDNMLILCNFCIGVACWVLN*HFMKQH Trigger: GTGCTGCTTCATGAAATGCAAATTCAACACCCAACA...AGCTACACCGATACAAAAATTACATAAGATAAGCATGTTGTCTACCCTTGTTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR CAA 90 bp | CATTACAAACTTTCAAAGAACACTTACGGAACAAGGGTAGACAACATGCTTATCAGAGGCTGTTGGGTGTaGAATTTGCATTTCATGAAG | + |
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Preference number: 5 (lower is better) Translates to: HYKLSKNTYGTRVDNMLIRGCWV*NLHFMK Trigger: CTTCATGAAATGCAAATTCAACACCCAACAGCCTCT...GATAAGCATGTTGTCTACCCTTGTTCCGTAAGTGTTCTTTGAAAGTTTGTAATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR CAA 90 bp | CATTACAAACTTTCAAAGAACACTTACGGAACAAGGGTAGACAACATGCTTATCGACTTGTTCCAGAAATaGGAGTGCCTTTTCTTTTGC | + |
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Preference number: 5 (lower is better) Translates to: HYKLSKNTYGTRVDNMLIDLFQK*ECLFFC Trigger: GCAAAAGAAAAGGCACTCCAATTTCTGGAACAAGTC...GATAAGCATGTTGTCTACCCTTGTTCCGTAAGTGTTCTTTGAAAGTTTGTAATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR CAA 90 bp | GACATTATGAAACCCATAAATTACCCAGATGTGTTTTACACTGGCAAGGATCTTGGGGTCAATCCCCTTTaGATTAATAACGACAAATCC | + |
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Preference number: 5 (lower is better) Translates to: DIMKPINYPDVFYTGKDLGVNPL*INNDKS Trigger: GGATTTGTCGTTATTAATCAAAAGGGGATTGACCCC...AAGATCCTTGCCAGTGTAAAACACATCTGGGTAATTTATGGGTTTCATAATGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS-3UTR CAA 90 bp | GTCACCATGCCTTATTTAGGAGAAAACCATTACAAACTTTCAAAGAACACTTACCCCTTCACACTGGGCTaGTATTTAATCAGAGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: VTMPYLGENHYKLSKNTYPFTLG*YLIRAS Trigger: AGAAGCTCTGATTAAATACAAGCCCAGTGTGAAGGG...GTAAGTGTTCTTTGAAAGTTTGTAATGGTTTTCTCCTAAATAAGGCATGGTGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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| CDS GCA 72 bp | ACACACCCATCTCTGCAGCCACCATCGGCTCACCTGTaGTCAGATCCACACCTACGAGCTGGCCGGATTCCG | + |
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Preference number: 6 (lower is better) Translates to: THPSLQPPSAHL*SDPHLRAGRIP Trigger: CGGAATCCGGCCAGCTCGTAGGTGTGGATCTGAGCACAGGTGAGCCGATGGTGGCTGCAGAGATGGGTGTGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201414.5 |
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