Pregenerated sensors for CCNQ (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049489Ensembl transcript IDs: ENSMUST00000059468.6
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAGGGTGCAGTTCTATTCTTTAACTTTCCTGTTGGCGACCTGCAATaGTCCATGCCTCAAATGCAGCATCTTCTCAAAGGGCAAAAGCTG | + |
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Preference number: 1 (lower is better) Translates to: KGAVLFFNFPVGDLQ*SMPQMQHLLKGQKL Trigger: CAGCTTTTGCCCTTTGAGAAGATGCTGCATTTGAGGCATGGACCATTGCAGGTCGCCAACAGGAAAGTTAAAGAATAGAACTGCACCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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| 3UTR-3UTR TCA 90 bp | CATACTTCCCCTAAGGGTGCAGTTCTATTCTTTAACTTTCCTGTTGGCGACCTGCTGCTGGGGACAAAATaGCAGCATGTCATTGCAGTC | + |
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Preference number: 2 (lower is better) Translates to: HTSPKGAVLFFNFPVGDLLLGTK*QHVIAV Trigger: GACTGCAATGACATGCTGTCATTTTGTCCCCAGCAG...CAGGTCGCCAACAGGAAAGTTAAAGAATAGAACTGCACCCTTAGGGGAAGTATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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| 3UTR-3UTR GCA 90 bp | CATCTTCTCAAAGGGCAAAAGCTGATGCAGCCAATTCTAGAAAGCTCTATATGTACCAATGACATCCTCTaGCAGCACAACCAGTCCTCC | + |
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Preference number: 2 (lower is better) Translates to: HLLKGQKLMQPILESSICTNDIL*QHNQSS Trigger: GGAGGACTGGTTGTGCTGGCAGAGGATGTCATTGGT...ACATATAGAGCTTTCTAGAATTGGCTGCATCAGCTTTTGCCCTTTGAGAAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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| 3UTR-3UTR CCA 90 bp | CTAAGGGTGCAGTTCTATTCTTTAACTTTCCTGTTGGCGACCTGCAATGGTCCATATGTCCTGCCCACATaGAAGCTCTTAGCATTATTT | + |
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Preference number: 2 (lower is better) Translates to: LRVQFYSLTFLLATCNGPYVLPT*KLLALF Trigger: AAATAATGCTAAGAGCTTCCATGTGGGCAGGACATA...TGGACCATTGCAGGTCGCCAACAGGAAAGTTAAAGAATAGAACTGCACCCTTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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| 3UTR-3UTR CCA 90 bp | CTATGTTACACATTCATACTTCCCCTAAGGGTGCAGTTCTATTCTTTAACTTTCGTTGGCGACCTGCAATaGTCCATGCCTCAAATGCAG | + |
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Preference number: 2 (lower is better) Translates to: LCYTFILPLRVQFYSLTFVGDLQ*SMPQMQ Trigger: CTGCATTTGAGGCATGGACCATTGCAGGTCGCCAAC...GAAAGTTAAAGAATAGAACTGCACCCTTAGGGGAAGTATGAATGTGTAACATAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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| 3UTR-3UTR TCA 90 bp | CTATGTTACACATTCATACTTCCCCTAAGGGTGCAGTTCTATTCTTTAACTTTCGCTCTTAGCATTATTTaGACAAGGGCTGCTGGGGAC | + |
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Preference number: 2 (lower is better) Translates to: LCYTFILPLRVQFYSLTFALSII*TRAAGD Trigger: GTCCCCAGCAGCCCTTGTTCAAATAATGCTAAGAGC...GAAAGTTAAAGAATAGAACTGCACCCTTAGGGGAAGTATGAATGTGTAACATAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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| 3UTR GCA 72 bp | TCTTTAACTTTCCTGTTGGCGACCTGCAATGGTCCATaGCTCAAATGCAGCATCTTCTCAAAGGGCAAAAGC | + |
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Preference number: 3 (lower is better) Translates to: SLTFLLATCNGP*LKCSIFSKGKS Trigger: GCTTTTGCCCTTTGAGAAGATGCTGCATTTGAGGCATGGACCATTGCAGGTCGCCAACAGGAAAGTTAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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| 3UTR TCA 72 bp | ATATGTCCTGCCCACATGGAAGCTCTTAGCATTATTTaGACAAGGGCTGCTGGGGACAAAATGACAGCATGT | + |
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Preference number: 3 (lower is better) Translates to: ICPAHMEALSII*TRAAGDKMTAC Trigger: ACATGCTGTCATTTTGTCCCCAGCAGCCCTTGTTCAAATAATGCTAAGAGCTTCCATGTGGGCAGGACATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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| 3UTR CCA 72 bp | GTTCTATTCTTTAACTTTCCTGTTGGCGACCTGCAATaGTCCATGCCTCAAATGCAGCATCTTCTCAAAGGG | + |
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Preference number: 3 (lower is better) Translates to: VLFFNFPVGDLQ*SMPQMQHLLKG Trigger: CCCTTTGAGAAGATGCTGCATTTGAGGCATGGACCATTGCAGGTCGCCAACAGGAAAGTTAAAGAATAGAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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| 3UTR-3UTR CAA 90 bp | GCAGCATCTTCTCAAAGGGCAAAAGCTGATGCAGCCAATTCTAGAAAGCTCTATAATGACAGCATGTCATaGCAGTCACCAATGACATCC | + |
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Preference number: 3 (lower is better) Translates to: AASSQRAKADAANSRKLYNDSMS*QSPMTS Trigger: GGATGTCATTGGTGACTGCAATGACATGCTGTCATT...ATAGAGCTTTCTAGAATTGGCTGCATCAGCTTTTGCCCTTTGAGAAGATGCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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| 3UTR TCA 72 bp | TTAGCATTATTTGAACAAGGGCTGCTGGGGACAAAATaGCAGCATGTCATTGCAGTCACCAATGACATCCTC | + |
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Preference number: 3 (lower is better) Translates to: LALFEQGLLGTK*QHVIAVTNDIL Trigger: GAGGATGTCATTGGTGACTGCAATGACATGCTGTCATTTTGTCCCCAGCAGCCCTTGTTCAAATAATGCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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| 3UTR CAA 72 bp | CCAGTCCTCCGAGTGGAGACACGCCATCACAGCAACTaGGTGGAACGATACCCCAGGCCTCCGATCATCCTG | + |
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Preference number: 4 (lower is better) Translates to: PVLRVETRHHSN*VERYPRPPIIL Trigger: CAGGATGATCGGAGGCCTGGGGTATCGTTCCACCAAGTTGCTGTGATGGCGTGTCTCCACTCGGAGGACTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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| CDS-3UTR CCA 90 bp | CAACCAGTCCTCCGAGTGGAGACACGCCATCACAGCAACTTGGTGGAACGATACTGCAAGCGGTGGCGATaGGGATGGACTGCATGCCTA | + |
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Preference number: 4 (lower is better) Translates to: QPVLRVETRHHSNLVERYCKRWR*GWTACL Trigger: TAGGCATGCAGTCCATCCCCATCGCCACCGCTTGCA...GTATCGTTCCACCAAGTTGCTGTGATGGCGTGTCTCCACTCGGAGGACTGGTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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| CDS-3UTR GCA 90 bp | TCTGCCAGCACAACCAGTCCTCCGAGTGGAGACACGCCATCACAGCAACTTGGTTCATCACTAAATACCTaGCACCAAGGCTTCTCGGCC | + |
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Preference number: 4 (lower is better) Translates to: SASTTSPPSGDTPSQQLGSSLNT*HQGFSA Trigger: GGCCGAGAAGCCTTGGTGGCAGGTATTTAGTGATGA...ACCAAGTTGCTGTGATGGCGTGTCTCCACTCGGAGGACTGGTTGTGCTGGCAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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| CDS-3UTR GCA 90 bp | CATACTTCCCCTAAGGGTGCAGTTCTATTCTTTAACTTTCCTGTTGGCGACCTGGCGATGGGGATGGACTaGATGCCTAGCTTGACGCCT | + |
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Preference number: 4 (lower is better) Translates to: HTSPKGAVLFFNFPVGDLAMGMD*MPSLTP Trigger: AGGCGTCAAGCTAGGCATGCAGTCCATCCCCATCGC...CAGGTCGCCAACAGGAAAGTTAAAGAATAGAACTGCACCCTTAGGGGAAGTATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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| 3UTR CAA 72 bp | AACAAGGGCTGCTGGGGACAAAATGACAGCATGTCATaGCAGTCACCAATGACATCCTCTGCCAGCACAACC | + |
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Preference number: 4 (lower is better) Translates to: NKGCWGQNDSMS*QSPMTSSASTT Trigger: GGTTGTGCTGGCAGAGGATGTCATTGGTGACTGCAATGACATGCTGTCATTTTGTCCCCAGCAGCCCTTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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| CDS-3UTR TCA 90 bp | TATTTGAACAAGGGCTGCTGGGGACAAAATGACAGCATGTCATTGCAGTCACCAAGCCCAAGCTGTAACTaGGATGGGGGTTCGTTGCCA | + |
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Preference number: 4 (lower is better) Translates to: YLNKGCWGQNDSMSLQSPSPSCN*DGGSLP Trigger: TGGCAACGAACCCCCATCTCAGTTACAGCTTGGGCT...TGGTGACTGCAATGACATGCTGTCATTTTGTCCCCAGCAGCCCTTGTTCAAATA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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| 3UTR CAA 72 bp | CCCCTAAGGGTGCAGTTCTATTCTTTAACTTTCCTGTaGGCGACCTGCAATGGTCCATGCCTCAAATGCAGC | + |
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Preference number: 4 (lower is better) Translates to: PLRVQFYSLTFL*ATCNGPCLKCS Trigger: GCTGCATTTGAGGCATGGACCATTGCAGGTCGCCAACAGGAAAGTTAAAGAATAGAACTGCACCCTTAGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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| CDS-3UTR GCA 90 bp | ACTTCCCCTAAGGGTGCAGTTCTATTCTTTAACTTTCCTGTTGGCGACCTGCAACAGGTAGAGGTCATATaGGTCCAGGTTGATCTCGCA | + |
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Preference number: 4 (lower is better) Translates to: TSPKGAVLFFNFPVGDLQQVEVI*VQVDLA Trigger: TGCGAGATCAACCTGGACGCATATGACCTCTACCTG...TTGCAGGTCGCCAACAGGAAAGTTAAAGAATAGAACTGCACCCTTAGGGGAAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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| CDS-3UTR GCA 90 bp | CTATGTTACACATTCATACTTCCCCTAAGGGTGCAGTTCTATTCTTTAACTTTCCTCGGCCTCACCCTCTaGAGGCACCTCGACTCCATA | + |
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Preference number: 4 (lower is better) Translates to: LCYTFILPLRVQFYSLTFLGLTL*RHLDSI Trigger: TATGGAGTCGAGGTGCCTGCAGAGGGTGAGGCCGAG...GAAAGTTAAAGAATAGAACTGCACCCTTAGGGGAAGTATGAATGTGTAACATAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059468.6 |
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