Pregenerated sensors for CCNB1IP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071470Ensembl transcript IDs: ENSMUST00000095932.5
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CCATGCCCTAAGCTAACAATCAAGAAACCAAACAGGAAGCCACACGCCCTACTGTCTAAGGTCGAAATGTaGAGAGAACTCAGGGATGCA | + |
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Preference number: 2 (lower is better) Translates to: PCPKLTIKKPNRKPHALLSKVEM*RELRDA Trigger: TGCATCCCTGAGTTCTCTTCACATTTCGACCTTAGA...CAGTAGGGCGTGTGGCTTCCTGTTTGGTTTCTTGATTGTTAGCTTAGGGCATGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| 3UTR-3UTR TCA 90 bp | GCTCCAGGGAAACATAACACTGAGGCTTCTATGAGCATAAACACAGCTTGGTCTAACAATGTGATTGTGTaGGCAATGACAAACGTAGAG | + |
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Preference number: 2 (lower is better) Translates to: APGKHNTEASMSINTAWSNNVIV*AMTNVE Trigger: CTCTACGTTTGTCATTGCTCACACAATCACATTGTT...AGACCAAGCTGTGTTTATGCTCATAGAAGCCTCAGTGTTATGTTTCCCTGGAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| 3UTR-3UTR GCA 90 bp | TACATGTTAATGGAAAGCCACCATTTTCCAAGACTATCATTTTTGGCCATCATTCTGAGATTCATGAAATaGCCATGCCCTAAGCTAACA | + |
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Preference number: 2 (lower is better) Translates to: YMLMESHHFPRLSFLAIILRFMK*PCPKLT Trigger: TGTTAGCTTAGGGCATGGGCATTTCATGAATCTCAG...AATGATGGCCAAAAATGATAGTCTTGGAAAATGGTGGCTTTCCATTAACATGTA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| 3UTR TCA 72 bp | CCCTACTGCAAGCCAACTTCTTCTAAGGTCGAAATGTaGAGAGAACTCAGGGATGCAGGAATGAAAAATGAG | + |
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Preference number: 3 (lower is better) Translates to: PYCKPTSSKVEM*RELRDAGMKNE Trigger: CTCATTTTTCATTCCTGCATCCCTGAGTTCTCTTCACATTTCGACCTTAGAAGAAGTTGGCTTGCAGTAGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| 3UTR TCA 72 bp | GGTCTGAATCAGGATCTGTGCAACAATGTGATTGTGTaGGCAATGACAAACGTAGAGACTGAGATTCATGAA | + |
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Preference number: 3 (lower is better) Translates to: GLNQDLCNNVIV*AMTNVETEIHE Trigger: TTCATGAATCTCAGTCTCTACGTTTGTCATTGCTCACACAATCACATTGTTGCACAGATCCTGATTCAGACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| 3UTR CCA 72 bp | CATAACACTGAGGCTTCTATGAGCATAAACACAGCTTaGTCTGAATCAGGATCTGTGCAACAATGTGATTGT | + |
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Preference number: 3 (lower is better) Translates to: HNTEASMSINTA*SESGSVQQCDC Trigger: ACAATCACATTGTTGCACAGATCCTGATTCAGACCAAGCTGTGTTTATGCTCATAGAAGCCTCAGTGTTATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR GCA 90 bp | CGCCCTACTGCAAGCCAACTTCTTCTAAGGTCGAAATGTGAAGAGAACTCAGGGCTGCTGCAGACTTGCTaGTCTGCTTCATGGCTTGGA | + |
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Preference number: 4 (lower is better) Translates to: RPTASQLLLRSKCEENSGLLQTC*SASWLG Trigger: TCCAAGCCATGAAGCAGAGCAGCAAGTCTGCAGCAG...CCCTGAGTTCTCTTCACATTTCGACCTTAGAAGAAGTTGGCTTGCAGTAGGGCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR GCA 90 bp | CTAACAATCAAGAAACCAAACAGGAAGCCACACGCCCTACTGCAAGCCAACTTCGCCCTGCTGCAGACTTaGTGCTCTGCTTCATGGCTT | + |
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Preference number: 4 (lower is better) Translates to: LTIKKPNRKPHALLQANFALLQT*CSASWL Trigger: AAGCCATGAAGCAGAGCAGCAAGTCTGCAGCAGGGC...GAAGTTGGCTTGCAGTAGGGCGTGTGGCTTCCTGTTTGGTTTCTTGATTGTTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR GCA 90 bp | CTAACAATCAAGAAACCAAACAGGAAGCCACACGCCCTACTGCAAGCCAACTTCCTCTGGGCGAAGCCCTaGCAATACCATAGCTTTGTA | + |
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Preference number: 4 (lower is better) Translates to: LTIKKPNRKPHALLQANFLWAKP*QYHSFV Trigger: TACAAAGCTATGGTATTGGCAGGGCTTCGCCCAGAG...GAAGTTGGCTTGCAGTAGGGCGTGTGGCTTCCTGTTTGGTTTCTTGATTGTTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR GCA 90 bp | ACTGCAAGCCAACTTCTTCTAAGGTCGAAATGTGAAGAGAACTCAGGGATGCAGGCAGACTTGCTGCTCTaGTTCATGGCTTGGAGATGC | + |
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Preference number: 4 (lower is better) Translates to: TASQLLLRSKCEENSGMQADLLL*FMAWRC Trigger: GCATCTCCAAGCCATGAAGCAGAGCAGCAAGTCTGC...CTGCATCCCTGAGTTCTCTTCACATTTCGACCTTAGAAGAAGTTGGCTTGCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR CCA 90 bp | GCTCCAGGGAAACATAACACTGAGGCTTCTATGAGCATAAACACAGCTTGGTCTCGCTCCTGGTGTACCTaGTATGTCCAGAAGGCCAAT | + |
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Preference number: 4 (lower is better) Translates to: APGKHNTEASMSINTAWSRSWCT*YVQKAN Trigger: ATTGGCCTTCTGGACATACCAGGTACACCAGGAGCG...AGACCAAGCTGTGTTTATGCTCATAGAAGCCTCAGTGTTATGTTTCCCTGGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR TCA 90 bp | CGCCCTACTGCAAGCCAACTTCTTCTAAGGTCGAAATGTGAAGAGAACTCAGGGTCATCTCCACCACCTTaGTTTCCAACTGGTATATGG | + |
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Preference number: 4 (lower is better) Translates to: RPTASQLLLRSKCEENSGSSPPP*FPTGIW Trigger: CCATATACCAGTTGGAAATCAAGGTGGTGGAGATGA...CCCTGAGTTCTCTTCACATTTCGACCTTAGAAGAAGTTGGCTTGCAGTAGGGCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR TCA 90 bp | CTAACAATCAAGAAACCAAACAGGAAGCCACACGCCCTACTGCAAGCCAACTTCGGTTCTCGGCCTTGCTaGAATTATACTCTTGATAGA | + |
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Preference number: 4 (lower is better) Translates to: LTIKKPNRKPHALLQANFGSRPC*NYTLDR Trigger: TCTATCAAGAGTATAATTTCAGCAAGGCCGAGAACC...GAAGTTGGCTTGCAGTAGGGCGTGTGGCTTCCTGTTTGGTTTCTTGATTGTTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR CCA 90 bp | GCTCCAGGGAAACATAACACTGAGGCTTCTATGAGCATAAACACAGCTTGGTCTTGGAGCTTTTGGTACTaGCGATTACGCTCCATAAGT | + |
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Preference number: 4 (lower is better) Translates to: APGKHNTEASMSINTAWSWSFWY*RLRSIS Trigger: ACTTATGGAGCGTAATCGCCAGTACCAAAAGCTCCA...AGACCAAGCTGTGTTTATGCTCATAGAAGCCTCAGTGTTATGTTTCCCTGGAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR TCA 90 bp | AATCAATCCAAAGCTCCAGGGAAACATAACACTGAGGCTTCTATGAGCATAAACTGTGAGAACAGGCAGTaGCCCAAGCATAACCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: NQSKAPGKHNTEASMSINCENRQ*PKHNQR Trigger: TCTCTGGTTATGCTTGGGTCACTGCCTGTTCTCACA...GTTTATGCTCATAGAAGCCTCAGTGTTATGTTTCCCTGGAGCTTTGGATTGATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR TCA 90 bp | AGCATAAACACAGCTTGGTCTGAATCAGGATCTGTGCAACAATGTGATTGTGTGGTCCAAAGAAAACTTTaGGTTATTCCCTGGTGGGAA | + |
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Preference number: 4 (lower is better) Translates to: SINTAWSESGSVQQCDCVVQRKL*VIPWWE Trigger: TTCCCACCAGGGAATAACTCAAAGTTTTCTTTGGAC...CACACAATCACATTGTTGCACAGATCCTGATTCAGACCAAGCTGTGTTTATGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR CCA 90 bp | AATCAATCCAAAGCTCCAGGGAAACATAACACTGAGGCTTCTATGAGCATAAACTCCATCTGTTTTAAGTaGTTCTCGGCCTTGCTGAAA | + |
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Preference number: 4 (lower is better) Translates to: NQSKAPGKHNTEASMSINSICFK*FSALLK Trigger: TTTCAGCAAGGCCGAGAACCACTTAAAACAGATGGA...GTTTATGCTCATAGAAGCCTCAGTGTTATGTTTCCCTGGAGCTTTGGATTGATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR GCA 90 bp | AGCATAAACACAGCTTGGTCTGAATCAGGATCTGTGCAACAATGTGATTGTGTGTTCTTGCTCTGTATTTaGTGCATATACATCTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: SINTAWSESGSVQQCDCVFLLCI*CIYIFS Trigger: GGAGAAGATGTATATGCAGCAAATACAGAGCAAGAA...CACACAATCACATTGTTGCACAGATCCTGATTCAGACCAAGCTGTGTTTATGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR CCA 90 bp | TACATGTTAATGGAAAGCCACCATTTTCCAAGACTATCATTTTTGGCCATCATTTCCAGGGAGCCTTCTTaGCTGGCGATAGTGATATTT | + |
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Preference number: 4 (lower is better) Translates to: YMLMESHHFPRLSFLAIISREPS*LAIVIF Trigger: AAATATCACTATCGCCAGCCAAGAAGGCTCCCTGGA...AATGATGGCCAAAAATGATAGTCTTGGAAAATGGTGGCTTTCCATTAACATGTA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR GCA 90 bp | TACATGTTAATGGAAAGCCACCATTTTCCAAGACTATCATTTTTGGCCATCATTTTCATGGCTTGGAGATaGAAAACTAAAGAAGTTGTT | + |
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Preference number: 4 (lower is better) Translates to: YMLMESHHFPRLSFLAIIFMAWR*KTKEVV Trigger: AACAACTTCTTTAGTTTTGCATCTCCAAGCCATGAA...AATGATGGCCAAAAATGATAGTCTTGGAAAATGGTGGCTTTCCATTAACATGTA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR CCA 90 bp | TACATGTTAATGGAAAGCCACCATTTTCCAAGACTATCATTTTTGGCCATCATTTTTCCAACTGGTATATaGTCCAAAGAAAACTTTGAG | + |
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Preference number: 4 (lower is better) Translates to: YMLMESHHFPRLSFLAIIFPTGI*SKENFE Trigger: CTCAAAGTTTTCTTTGGACCATATACCAGTTGGAAA...AATGATGGCCAAAAATGATAGTCTTGGAAAATGGTGGCTTTCCATTAACATGTA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR CAA 90 bp | ACTGCAAGCCAACTTCTTCTAAGGTCGAAATGTGAAGAGAACTCAGGGATGCAGGGCCCTGCTGCAGACTaGCTGCTCTGCTTCATGGCT | + |
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Preference number: 5 (lower is better) Translates to: TASQLLLRSKCEENSGMQGPAAD*LLCFMA Trigger: AGCCATGAAGCAGAGCAGCAAGTCTGCAGCAGGGCC...CTGCATCCCTGAGTTCTCTTCACATTTCGACCTTAGAAGAAGTTGGCTTGCAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR CAA 90 bp | CTAACAATCAAGAAACCAAACAGGAAGCCACACGCCCTACTGCAAGCCAACTTCAAGGCCTTGGAGCTTTaGGTACTGGCGATTACGCTC | + |
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Preference number: 5 (lower is better) Translates to: LTIKKPNRKPHALLQANFKALEL*VLAITL Trigger: GAGCGTAATCGCCAGTACCAAAAGCTCCAAGGCCTT...GAAGTTGGCTTGCAGTAGGGCGTGTGGCTTCCTGTTTGGTTTCTTGATTGTTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR CAA 90 bp | CCATGCCCTAAGCTAACAATCAAGAAACCAAACAGGAAGCCACACGCCCTACTGGGTCCAAAGAAAACTTaGAGTTATTCCCTGGTGGGA | + |
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Preference number: 5 (lower is better) Translates to: PCPKLTIKKPNRKPHALLGPKKT*SYSLVG Trigger: TCCCACCAGGGAATAACTCAAAGTTTTCTTTGGACC...CAGTAGGGCGTGTGGCTTCCTGTTTGGTTTCTTGATTGTTAGCTTAGGGCATGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR CAA 90 bp | CCATGCCCTAAGCTAACAATCAAGAAACCAAACAGGAAGCCACACGCCCTACTGTTCATCTCCACCACCTaGATTTCCAACTGGTATATG | + |
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Preference number: 5 (lower is better) Translates to: PCPKLTIKKPNRKPHALLFISTT*ISNWYM Trigger: CATATACCAGTTGGAAATCAAGGTGGTGGAGATGAA...CAGTAGGGCGTGTGGCTTCCTGTTTGGTTTCTTGATTGTTAGCTTAGGGCATGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR CAA 90 bp | TCTGAATCAGGATCTGTGCAACAATGTGATTGTGTGAGCAATGACAAACGTAGAGCTATCATAAAGGCCTaGGAGCTTTTGGTACTGGCG | + |
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Preference number: 5 (lower is better) Translates to: SESGSVQQCDCVSNDKRRAIIKA*ELLVLA Trigger: CGCCAGTACCAAAAGCTCCAAGGCCTTTATGATAGC...TCTACGTTTGTCATTGCTCACACAATCACATTGTTGCACAGATCCTGATTCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS-3UTR CAA 90 bp | CTAACAATCAAGAAACCAAACAGGAAGCCACACGCCCTACTGCAAGCCAACTTCATTCTTGCTCTGTATTaGCTGCATATACATCTTCTC | + |
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Preference number: 5 (lower is better) Translates to: LTIKKPNRKPHALLQANFILALY*LHIHLL Trigger: GAGAAGATGTATATGCAGCAAATACAGAGCAAGAAT...GAAGTTGGCTTGCAGTAGGGCGTGTGGCTTCCTGTTTGGTTTCTTGATTGTTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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| CDS GCA 72 bp | GCTGCAGACTTGCTGCTCTGCTTCATGGCTTGGAGATaGAAAACTAAAGAAGTTGTTAATGGGTTCAGGCGC | + |
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Preference number: 6 (lower is better) Translates to: AADLLLCFMAWR*KTKEVVNGFRR Trigger: GCGCCTGAACCCATTAACAACTTCTTTAGTTTTGCATCTCCAAGCCATGAAGCAGAGCAGCAAGTCTGCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095932.5 |
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