Pregenerated sensors for CCDC68 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038903Ensembl transcript IDs: ENSMUST00000043929.11, ENSMUST00000080050.6
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TTAGGTTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTCAACTCTGGAGCTaGAACTGCATTTTCAGGAAT | + |
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Preference number: 2 (lower is better) Translates to: LGLKQNSSSMWERSSFLGFQLWS*NCIFRN Trigger: ATTCCTGAAAATGCAGTTTCAGCTCCAGAGTTGAAA...GCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAACCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| 3UTR-3UTR TCA 90 bp | GGTTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTTTTCAACTCTGGAGCTaGAACTGCATTTTCAGGAAT | + |
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Preference number: 2 (lower is better) Translates to: GLKQNSSSMWERSSFLGFFQLWS*NCIFRN Trigger: ATTCCTGAAAATGCAGTTTCAGCTCCAGAGTTGAAA...AAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAACC 42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR CCA 90 bp | TTAGGTTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCGACAGGTGGGGTCTGTaGTGGAGTCTGAGCCATTCT | + |
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Preference number: 4 (lower is better) Translates to: LGLKQNSSSMWERSSFLGDRWGL*WSLSHS Trigger: AGAATGGCTCAGACTCCACCACAGACCCCACCTGTC...GCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAACCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR CCA 90 bp | TTAGGTTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCAGGTGGGGTCTGTGGTaGAGTCTGAGCCATTCTGAA | + |
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Preference number: 4 (lower is better) Translates to: LGLKQNSSSMWERSSFLGRWGLW*SLSHSE Trigger: TTCAGAATGGCTCAGACTCCACCACAGACCCCACCT...GCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAACCTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR TCA 90 bp | TTAGGTTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTCTGTCTTACCGCTTaGGGGAACTTCTGTGGTCAC | + |
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Preference number: 4 (lower is better) Translates to: LGLKQNSSSMWERSSFLGFCLTA*GNFCGH Trigger: GTGACCACAGAAGTTCCCTCAAGCGGTAAGACAGAA...GCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAACCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR GCA 90 bp | GGTTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTGAGTGGATCACGAACTaGAAATGGGAGATCTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: GLKQNSSSMWERSSFLGFEWITN*KWEICS Trigger: GGAGCAGATCTCCCATTTGCAGTTCGTGATCCACTC...AAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS-3UTR CCA 90 bp | CAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTTTAAGTTATGACAGGTGGGGTCTGTaGTGGAGTCTGAGCCATTCT | + |
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Preference number: 4 (lower is better) Translates to: QNSSSMWERSSFLGFLSYDRWGL*WSLSHS Trigger: AGAATGGCTCAGACTCCACCACAGACCCCACCTGTC...ATAACTTAAAAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR CCA 90 bp | TTAGGTTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCATCACGAACTGCAAATaGGAGATCTGCTCCTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: LGLKQNSSSMWERSSFLGITNCK*EICSWR Trigger: CCTCCAGGAGCAGATCTCCCATTTGCAGTTCGTGAT...GCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAACCTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS-3UTR CCA 90 bp | TTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTTTCGAAGGTTCTGGTGCTaGGAGTGGATCACGAACTGC | + |
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Preference number: 4 (lower is better) Translates to: FKAEFIFHVGKVLVPWLFRRFWC*EWITNC Trigger: GCAGTTCGTGATCCACTCCCAGCACCAGAACCTTCG...AAAAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS-3UTR GCA 90 bp | TTAGGTTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTCTGCATCTAGTTTGTaGCTTGCATTGCCACAGCCT | + |
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Preference number: 4 (lower is better) Translates to: LGLKQNSSSMWERSSFLGSASSL*LALPQP Trigger: AGGCTGTGGCAATGCAAGGCACAAACTAGATGCAGA...GCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAACCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR GCA 90 bp | CAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTTTAAGTTATCAAAGCTGCTGCTCCTaGTTCTCTGGAAGCTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: QNSSSMWERSSFLGFLSYQSCCS*FSGSFQ Trigger: CTGGAAGCTTCCAGAGAAGCAGGAGCAGCAGCTTTG...ATAACTTAAAAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR GCA 90 bp | GGTTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTATTTCTCAAAGCTGCTaGTCCTGCTTCTCTGGAAGC | + |
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Preference number: 4 (lower is better) Translates to: GLKQNSSSMWERSSFLGFISQSC*SCFSGS Trigger: GCTTCCAGAGAAGCAGGAGCAGCAGCTTTGAGAAAT...AAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR CCA 90 bp | TTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTTTAGGTGGGGTCTGTGGTaGAGTCTGAGCCATTCTGAA | + |
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Preference number: 4 (lower is better) Translates to: FKAEFIFHVGKVLVPWLFRWGLW*SLSHSE Trigger: TTCAGAATGGCTCAGACTCCACCACAGACCCCACCT...AAAAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR TCA 90 bp | TTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTTTTTCTGTCTTACCGCTTaGGGGAACTTCTGTGGTCAC | + |
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Preference number: 4 (lower is better) Translates to: FKAEFIFHVGKVLVPWLFFCLTA*GNFCGH Trigger: GTGACCACAGAAGTTCCCTCAAGCGGTAAGACAGAA...AAAAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAA 44% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR TCA 90 bp | TTAGGTTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTCTCATGTTTTCCATaGGCAAATCCAGACAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: LGLKQNSSSMWERSSFLGFSCFP*ANPDRW Trigger: CCACCTGTCTGGATTTGCTCATGGAAAACATGAGAA...GCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAACCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR TCA 90 bp | GATAAATACTGGCGTGATGTCATTTCAACTCTGGAGCTGAAACTGCATTTTCAGTCAAGGTTGTTGACCTaGAGGAGATGTTTCCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: DKYWRDVISTLELKLHFQSRLLT*RRCFLP Trigger: GGGCAGGAAACATCTCCTTCAGGTCAACAACCTTGA...CTGAAAATGCAGTTTCAGCTCCAGAGTTGAAATGACATCACGCCAGTATTTATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR TCA 90 bp | CAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTTTAAGTTATTCAAGGTTGTTGACCTaGAGGAGATGTTTCCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: QNSSSMWERSSFLGFLSYSRLLT*RRCFLP Trigger: GGGCAGGAAACATCTCCTTCAGGTCAACAACCTTGA...ATAACTTAAAAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR TCA 90 bp | TTAGGTTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCCTTTCTCAAGGTTGTTaGCCTGAAGGAGATGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: LGLKQNSSSMWERSSFLGLSQGC*PEGDVS Trigger: GGAAACATCTCCTTCAGGTCAACAACCTTGAGAAAG...GCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAACCTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR TCA 90 bp | TTAGGTTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCGTTTCTTCAATAATGTaGGCAGACGAAGAGTCACAG | + |
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Preference number: 4 (lower is better) Translates to: LGLKQNSSSMWERSSFLGVSSIM*ADEESQ Trigger: CTGTGACTCTTCGTCTGCTCACATTATTGAAGAAAC...GCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAACCTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR GCA 90 bp | GATAAATACTGGCGTGATGTCATTTCAACTCTGGAGCTGAAACTGCATTTTCAGTCTGCATCTAGTTTGTaGCTTGCATTGCCACAGCCT | + |
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Preference number: 4 (lower is better) Translates to: DKYWRDVISTLELKLHFQSASSL*LALPQP Trigger: AGGCTGTGGCAATGCAAGGCACAAACTAGATGCAGA...CTGAAAATGCAGTTTCAGCTCCAGAGTTGAAATGACATCACGCCAGTATTTATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR GCA 90 bp | TTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTTTTCCAGCCCTACGATTTaGCCATGTTTTTCCTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: FKAEFIFHVGKVLVPWLFSSPTI*PCFSSS Trigger: ACTGGAGGAAAAACATGGGCAAATCGTAGGGCTGGA...AAAAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAA 43% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR GCA 90 bp | GATAAATACTGGCGTGATGTCATTTCAACTCTGGAGCTGAAACTGCATTTTCAGTCCAGCCCTACGATTTaGCCATGTTTTTCCTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: DKYWRDVISTLELKLHFQSSPTI*PCFSSS Trigger: ACTGGAGGAAAAACATGGGCAAATCGTAGGGCTGGA...CTGAAAATGCAGTTTCAGCTCCAGAGTTGAAATGACATCACGCCAGTATTTATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR GCA 90 bp | CAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTTTAAGTTATTGCAAATGGGAGATCTaGTCCTGGAGGATGGAAATC | + |
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Preference number: 4 (lower is better) Translates to: QNSSSMWERSSFLGFLSYCKWEI*SWRMEI Trigger: GATTTCCATCCTCCAGGAGCAGATCTCCCATTTGCA...ATAACTTAAAAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS-3UTR TCA 90 bp | GATAAATACTGGCGTGATGTCATTTCAACTCTGGAGCTGAAACTGCATTTTCAGGAGTCTGAGCCATTCTaGATATTTCCAGATCCCTCT | + |
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Preference number: 4 (lower is better) Translates to: DKYWRDVISTLELKLHFQESEPF*IFPDPS Trigger: AGAGGGATCTGGAAATATTCAGAATGGCTCAGACTC...CTGAAAATGCAGTTTCAGCTCCAGAGTTGAAATGACATCACGCCAGTATTTATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR TCA 90 bp | GATAAATACTGGCGTGATGTCATTTCAACTCTGGAGCTGAAACTGCATTTTCAGCTTTCTCAAGGTTGTTaGCCTGAAGGAGATGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: DKYWRDVISTLELKLHFQLSQGC*PEGDVS Trigger: GGAAACATCTCCTTCAGGTCAACAACCTTGAGAAAG...CTGAAAATGCAGTTTCAGCTCCAGAGTTGAAATGACATCACGCCAGTATTTATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR TCA 90 bp | TTAGGTTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCGGGCTTCAAGCACAGTaGCCTTTTCTTTCAAATTTT | + |
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Preference number: 4 (lower is better) Translates to: LGLKQNSSSMWERSSFLGGLQAQ*PFLSNF Trigger: AAAATTTGAAAGAAAAGGTCACTGTGCTTGAAGCCC...GCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAACCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS-3UTR GCA 90 bp | CAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTTTAAGTTATGTTTGTGCCTTGCATTaGCACAGCCTTCTTTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: QNSSSMWERSSFLGFLSYVCALH*HSLLFP Trigger: AGGAAAAAGAAGGCTGTGGCAATGCAAGGCACAAAC...ATAACTTAAAAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR GCA 90 bp | GATAAATACTGGCGTGATGTCATTTCAACTCTGGAGCTGAAACTGCATTTTCAGGTTTGTGCCTTGCATTaGCACAGCCTTCTTTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: DKYWRDVISTLELKLHFQVCALH*HSLLFP Trigger: AGGAAAAAGAAGGCTGTGGCAATGCAAGGCACAAAC...CTGAAAATGCAGTTTCAGCTCCAGAGTTGAAATGACATCACGCCAGTATTTATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR CCA 90 bp | TTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTTTTCTGCTCCTGGAGGATaGAAATCTCCGTTTGAAGAT | + |
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Preference number: 4 (lower is better) Translates to: FKAEFIFHVGKVLVPWLFSAPGG*KSPFED Trigger: ATCTTCAAACGGAGATTTCCATCCTCCAGGAGCAGA...AAAAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAA 42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS-3UTR TCA 90 bp | GATAAATACTGGCGTGATGTCATTTCAACTCTGGAGCTGAAACTGCATTTTCAGGTTTCTTCAATAATGTaGGCAGACGAAGAGTCACAG | + |
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Preference number: 4 (lower is better) Translates to: DKYWRDVISTLELKLHFQVSSIM*ADEESQ Trigger: CTGTGACTCTTCGTCTGCTCACATTATTGAAGAAAC...CTGAAAATGCAGTTTCAGCTCCAGAGTTGAAATGACATCACGCCAGTATTTATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR TCA 90 bp | TTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTTTTGGAAGCTTCCAGCTTaGTTTGCAACACTTCATTCT | + |
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Preference number: 4 (lower is better) Translates to: FKAEFIFHVGKVLVPWLFWKLPA*FATLHS Trigger: AGAATGAAGTGTTGCAAATCAAGCTGGAAGCTTCCA...AAAAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAA 41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR TCA 90 bp | GATAAATACTGGCGTGATGTCATTTCAACTCTGGAGCTGAAACTGCATTTTCAGTGGAAGCTTCCAGCTTaGTTTGCAACACTTCATTCT | + |
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Preference number: 4 (lower is better) Translates to: DKYWRDVISTLELKLHFQWKLPA*FATLHS Trigger: AGAATGAAGTGTTGCAAATCAAGCTGGAAGCTTCCA...CTGAAAATGCAGTTTCAGCTCCAGAGTTGAAATGACATCACGCCAGTATTTATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR TCA 90 bp | GATAAATACTGGCGTGATGTCATTTCAACTCTGGAGCTGAAACTGCATTTTCAGGTGCCACCCTGGTTTTaGGTTCTTTATTGTTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: DKYWRDVISTLELKLHFQVPPWF*VLYCFP Trigger: TGGAAAACAATAAAGAACTCAAAACCAGGGTGGCAC...CTGAAAATGCAGTTTCAGCTCCAGAGTTGAAATGACATCACGCCAGTATTTATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000080050.6 |
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| CDS-3UTR GCA 90 bp | GATAAATACTGGCGTGATGTCATTTCAACTCTGGAGCTGAAACTGCATTTTCAGCTTCCCTTTAATGCCTaGTCTTTCTCAAGGTTGTTG | + |
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Preference number: 4 (lower is better) Translates to: DKYWRDVISTLELKLHFQLPFNA*SFSRLL Trigger: CAACAACCTTGAGAAAGAGCAGGCATTAAAGGGAAG...CTGAAAATGCAGTTTCAGCTCCAGAGTTGAAATGACATCACGCCAGTATTTATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR GCA 90 bp | CAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTTTAAGTTATCTTCCCTTTAATGCCTaGTCTTTCTCAAGGTTGTTG | + |
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Preference number: 4 (lower is better) Translates to: QNSSSMWERSSFLGFLSYLPFNA*SFSRLL Trigger: CAACAACCTTGAGAAAGAGCAGGCATTAAAGGGAAG...ATAACTTAAAAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR CCA 90 bp | GATAAATACTGGCGTGATGTCATTTCAACTCTGGAGCTGAAACTGCATTTTCAGTTGAGGGAACTTCTGTaGTCACTGTTACAGTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: DKYWRDVISTLELKLHFQLRELL*SLLQLS Trigger: TGACAACTGTAACAGTGACCACAGAAGTTCCCTCAA...CTGAAAATGCAGTTTCAGCTCCAGAGTTGAAATGACATCACGCCAGTATTTATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR CCA 90 bp | GATAAATACTGGCGTGATGTCATTTCAACTCTGGAGCTGAAACTGCATTTTCAGTTGAGTTCTTTATTCTaGGCTTCAAGCACAGTGACC | + |
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Preference number: 4 (lower is better) Translates to: DKYWRDVISTLELKLHFQLSSLF*ASSTVT Trigger: GGTCACTGTGCTTGAAGCCCAGAATAAAGAACTCAA...CTGAAAATGCAGTTTCAGCTCCAGAGTTGAAATGACATCACGCCAGTATTTATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS-3UTR TCA 90 bp | TTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTTTATGGAAATCTCCGTTTaGAGATCCTGGCAACTTTTT | + |
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Preference number: 4 (lower is better) Translates to: FKAEFIFHVGKVLVPWLFMEISV*RSWQLF Trigger: AAAAAGTTGCCAGGATCTTCAAACGGAGATTTCCAT...AAAAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS-3UTR TCA 90 bp | GATAAATACTGGCGTGATGTCATTTCAACTCTGGAGCTGAAACTGCATTTTCAGTTGTCAAATAATCTCTaGGCCACATTTCTCAAAGCT | + |
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Preference number: 4 (lower is better) Translates to: DKYWRDVISTLELKLHFQLSNNL*ATFLKA Trigger: AGCTTTGAGAAATGTGGCTCAGAGATTATTTGACAA...CTGAAAATGCAGTTTCAGCTCCAGAGTTGAAATGACATCACGCCAGTATTTATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR TCA 90 bp | CAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTTTAAGTTATTTGTCAAATAATCTCTaGGCCACATTTCTCAAAGCT | + |
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Preference number: 4 (lower is better) Translates to: QNSSSMWERSSFLGFLSYLSNNL*ATFLKA Trigger: AGCTTTGAGAAATGTGGCTCAGAGATTATTTGACAA...ATAACTTAAAAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS CCA 90 bp | CCTTCCATCTCCTGGATGATGCTGCGAAGGTTCTGGTGCTGGGAGTaGATCACGAACTGCAAATGGGAGATCTGCTCCTGGAGGATGGAA | + |
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Preference number: 5 (lower is better) Translates to: PSISWMMLRRFWCWE*ITNCKWEICSWRME Trigger: TTCCATCCTCCAGGAGCAGATCTCCCATTTGCAGTTCGTGATCCACTCCCAGCACCAGAACCTTCGCAGCATCATCCAGGAGATGGAAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS CCA 90 bp | TTTAGTCCTTCCATCTCCTGGATGATGCTGCGAAGGTTCTGGTGCTaGGAGTGGATCACGAACTGCAAATGGGAGATCTGCTCCTGGAGG | + |
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Preference number: 5 (lower is better) Translates to: FSPSISWMMLRRFWC*EWITNCKWEICSWR Trigger: CCTCCAGGAGCAGATCTCCCATTTGCAGTTCGTGATCCACTCCCAGCACCAGAACCTTCGCAGCATCATCCAGGAGATGGAAGGACTAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS TCA 90 bp | TCGGCGCTTCCCTTTAATGCCTGCTCTTTCTCAAGGTTGTTGACCTaGAGGAGATGTTTCCTGCCCTCGTGCTTTTTCTCCAGGTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: SALPFNACSFSRLLT*RRCFLPSCFFSRSP Trigger: TGGAGACCTGGAGAAAAAGCACGAGGGCAGGAAACATCTCCTTCAGGTCAACAACCTTGAGAAAGAGCAGGCATTAAAGGGAAGCGCCGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS TCA 90 bp | GACTTTCGGCGCTTCCCTTTAATGCCTGCTCTTTCTCAAGGTTGTTaGCCTGAAGGAGATGTTTCCTGCCCTCGTGCTTTTTCTCCAGGT | + |
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Preference number: 5 (lower is better) Translates to: DFRRFPLMPALSQGC*PEGDVSCPRAFSPG Trigger: ACCTGGAGAAAAAGCACGAGGGCAGGAAACATCTCCTTCAGGTCAACAACCTTGAGAAAGAGCAGGCATTAAAGGGAAGCGCCGAAAGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS CCA 90 bp | GGGAGTGGATCACGAACTGCAAATGGGAGATCTGCTCCTGGAGGATaGAAATCTCCGTTTGAAGATCCTGGCAACTTTTTGGATTTGCAG | + |
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Preference number: 5 (lower is better) Translates to: GSGSRTANGRSAPGG*KSPFEDPGNFLDLQ Trigger: CTGCAAATCCAAAAAGTTGCCAGGATCTTCAAACGGAGATTTCCATCCTCCAGGAGCAGATCTCCCATTTGCAGTTCGTGATCCACTCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS GCA 90 bp | GGAGACGGCCTTAGATACCAAGGTCCTAGGTGTTTCAGTCCAATGTaGCACCCTGGTTTTGAGTTCTTTATTGTTTTCCATCCTCTGTAC | + |
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Preference number: 5 (lower is better) Translates to: GDGLRYQGPRCFSPM*HPGFEFFIVFHPLY Trigger: GTACAGAGGATGGAAAACAATAAAGAACTCAAAACCAGGGTGGCACATTGGACTGAAACACCTAGGACCTTGGTATCTAAGGCCGTCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080050.6 |
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| CDS TCA 90 bp | AGTGTAGTTCGCATCTGTCTCACATACTCGGTTTCTTCAATAATGTaGGCAGACGAAGAGTCACAGAAGACGTGGCCGTCTTCTGTCTTA | + |
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Preference number: 5 (lower is better) Translates to: SVVRICLTYSVSSIM*ADEESQKTWPSSVL Trigger: TAAGACAGAAGACGGCCACGTCTTCTGTGACTCTTCGTCTGCTCACATTATTGAAGAAACCGAGTATGTGAGACAGATGCGAACTACACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS TCA 90 bp | AACTGCAAATGGGAGATCTGCTCCTGGAGGATGGAAATCTCCGTTTaGAGATCCTGGCAACTTTTTGGATTTGCAGCGTTGGATTTAAGC | + |
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Preference number: 5 (lower is better) Translates to: NCKWEICSWRMEISV*RSWQLFGFAALDLS Trigger: GCTTAAATCCAACGCTGCAAATCCAAAAAGTTGCCAGGATCTTCAAACGGAGATTTCCATCCTCCAGGAGCAGATCTCCCATTTGCAGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS-3UTR CAA 90 bp | TTAGGTTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCAGTTTGTGCCTTGCATaGCCACAGCCTTCTTTTTCC | + |
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Preference number: 5 (lower is better) Translates to: LGLKQNSSSMWERSSFLGSLCLA*PQPSFS Trigger: GGAAAAAGAAGGCTGTGGCAATGCAAGGCACAAACT...GCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAACCTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR CAA 90 bp | TTAGGTTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCCATCTAGTTTGTGCCTaGCATTGCCACAGCCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: LGLKQNSSSMWERSSFLGHLVCA*HCHSLL Trigger: AAGAAGGCTGTGGCAATGCAAGGCACAAACTAGATG...GCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAACCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR CAA 90 bp | GGTTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTCATCTAGTTTGTGCCTaGCATTGCCACAGCCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: GLKQNSSSMWERSSFLGFHLVCA*HCHSLL Trigger: AAGAAGGCTGTGGCAATGCAAGGCACAAACTAGATG...AAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR CAA 90 bp | TTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTTTAGTTTGTGCCTTGCATaGCCACAGCCTTCTTTTTCC | + |
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Preference number: 5 (lower is better) Translates to: FKAEFIFHVGKVLVPWLFSLCLA*PQPSFS Trigger: GGAAAAAGAAGGCTGTGGCAATGCAAGGCACAAACT...AAAAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR CAA 90 bp | TTAGGTTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCAGCTTCCAGCTTGATTaGCAACACTTCATTCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: LGLKQNSSSMWERSSFLGSFQLD*QHFILS Trigger: AGAGAGAATGAAGTGTTGCAAATCAAGCTGGAAGCT...GCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAACCTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR CAA 90 bp | TTAGGTTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCGATGGAAATCTCCGTTaGAAGATCCTGGCAACTTTT | + |
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Preference number: 5 (lower is better) Translates to: LGLKQNSSSMWERSSFLGDGNLR*KILATF Trigger: AAAAGTTGCCAGGATCTTCAAACGGAGATTTCCATC...GCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAACCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS TCA 90 bp | AGTTTGTGCCTTGCATTGCCACAGCCTTCTTTTTCCTTAAACATGTaGTTTCGGATCTTTTCCAGTGTAGTTCGCATCTGTCTCACATAC | + |
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Preference number: 5 (lower is better) Translates to: SLCLALPQPSFSLNM*FRIFSSVVRICLTY Trigger: GTATGTGAGACAGATGCGAACTACACTGGAAAAGATCCGAAATCACATGTTTAAGGAAAAAGAAGGCTGTGGCAATGCAAGGCACAAACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS-3UTR CAA 90 bp | GATAAATACTGGCGTGATGTCATTTCAACTCTGGAGCTGAAACTGCATTTTCAGGATCCTGGCAACTTTTaGGATTTGCAGCGTTGGATT | + |
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Preference number: 5 (lower is better) Translates to: DKYWRDVISTLELKLHFQDPGNF*DLQRWI Trigger: AATCCAACGCTGCAAATCCAAAAAGTTGCCAGGATC...CTGAAAATGCAGTTTCAGCTCCAGAGTTGAAATGACATCACGCCAGTATTTATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS-3UTR CAA 90 bp | TTTAAAGCAGAATTCATCTTCCATGTGGGAAAGGTCCTCGTTCCTTGGCTTTTTTTTGGATTTGCAGCGTaGGATTTAAGCTGGAACAGT | + |
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Preference number: 5 (lower is better) Translates to: FKAEFIFHVGKVLVPWLFFGFAA*DLSWNS Trigger: ACTGTTCCAGCTTAAATCCAACGCTGCAAATCCAAA...AAAAAGCCAAGGAACGAGGACCTTTCCCACATGGAAGATGAATTCTGCTTTAAA 41% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS CCA 72 bp | TCCTGGATGATGCTGCGAAGGTTCTGGTGCTGGGAGTaGATCACGAACTGCAAATGGGAGATCTGCTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: SWMMLRRFWCWE*ITNCKWEICSW Trigger: CCAGGAGCAGATCTCCCATTTGCAGTTCGTGATCCACTCCCAGCACCAGAACCTTCGCAGCATCATCCAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS GCA 72 bp | CCTTCCATCTCCTGGATGATGCTGCGAAGGTTCTGGTaGTGGGAGTGGATCACGAACTGCAAATGGGAGATC | + |
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Preference number: 6 (lower is better) Translates to: PSISWMMLRRFW*WEWITNCKWEI Trigger: GATCTCCCATTTGCAGTTCGTGATCCACTCCCAGCACCAGAACCTTCGCAGCATCATCCAGGAGATGGAAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS CCA 72 bp | AGTCCTTCCATCTCCTGGATGATGCTGCGAAGGTTCTaGTGCTGGGAGTGGATCACGAACTGCAAATGGGAG | + |
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Preference number: 6 (lower is better) Translates to: SPSISWMMLRRF*CWEWITNCKWE Trigger: CTCCCATTTGCAGTTCGTGATCCACTCCCAGCACCAGAACCTTCGCAGCATCATCCAGGAGATGGAAGGACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS TCA 72 bp | GAGCAAATCCAGACAGGTGGGGTCTGTGGTGGAGTCTaGGCCATTCTGAATATTTCCAGATCCCTCTGCATC | + |
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Preference number: 6 (lower is better) Translates to: EQIQTGGVCGGV*AILNISRSLCI Trigger: GATGCAGAGGGATCTGGAAATATTCAGAATGGCTCAGACTCCACCACAGACCCCACCTGTCTGGATTTGCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS TCA 72 bp | GTCACAGAAGACGTGGCCGTCTTCTGTCTTACCGCTTaGGGGAACTTCTGTGGTCACTGTTACAGTTGTCAT | + |
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Preference number: 6 (lower is better) Translates to: VTEDVAVFCLTA*GNFCGHCYSCH Trigger: ATGACAACTGTAACAGTGACCACAGAAGTTCCCTCAAGCGGTAAGACAGAAGACGGCCACGTCTTCTGTGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS TCA 72 bp | AGACAGGTGGGGTCTGTGGTGGAGTCTGAGCCATTCTaGATATTTCCAGATCCCTCTGCATCTAGTTTGTGC | + |
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Preference number: 6 (lower is better) Translates to: RQVGSVVESEPF*IFPDPSASSLC Trigger: GCACAAACTAGATGCAGAGGGATCTGGAAATATTCAGAATGGCTCAGACTCCACCACAGACCCCACCTGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS CAA 72 bp | AGTCACAGAAGACGTGGCCGTCTTCTGTCTTACCGCTaGAGGGAACTTCTGTGGTCACTGTTACAGTTGTCA | + |
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Preference number: 6 (lower is better) Translates to: SHRRRGRLLSYR*RELLWSLLQLS Trigger: TGACAACTGTAACAGTGACCACAGAAGTTCCCTCAAGCGGTAAGACAGAAGACGGCCACGTCTTCTGTGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS TCA 72 bp | CGCATCTGTCTCACATACTCGGTTTCTTCAATAATGTaGGCAGACGAAGAGTCACAGAAGACGTGGCCGTCT | + |
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Preference number: 6 (lower is better) Translates to: RICLTYSVSSIM*ADEESQKTWPS Trigger: AGACGGCCACGTCTTCTGTGACTCTTCGTCTGCTCACATTATTGAAGAAACCGAGTATGTGAGACAGATGCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS TCA 72 bp | CCCTTTAATGCCTGCTCTTTCTCAAGGTTGTTGACCTaGAGGAGATGTTTCCTGCCCTCGTGCTTTTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: PFNACSFSRLLT*RRCFLPSCFFS Trigger: GGAGAAAAAGCACGAGGGCAGGAAACATCTCCTTCAGGTCAACAACCTTGAGAAAGAGCAGGCATTAAAGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS CAA 72 bp | GTCCTAGGTGTTTCAGTCCAATGTGCCACCCTGGTTTaGAGTTCTTTATTCTGGGCTTCAAGCACAGTGACC | + |
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Preference number: 6 (lower is better) Translates to: VLGVSVQCATLV*SSLFWASSTVT Trigger: GGTCACTGTGCTTGAAGCCCAGAATAAAGAACTCAAAACCAGGGTGGCACATTGGACTGAAACACCTAGGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS CCA 72 bp | TCACGAACTGCAAATGGGAGATCTGCTCCTGGAGGATaGAAATCTCCGTTTGAAGATCCTGGCAACTTTTTG | + |
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Preference number: 6 (lower is better) Translates to: SRTANGRSAPGG*KSPFEDPGNFL Trigger: CAAAAAGTTGCCAGGATCTTCAAACGGAGATTTCCATCCTCCAGGAGCAGATCTCCCATTTGCAGTTCGTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS CAA 90 bp | GAACTGCAAATGGGAGATCTGCTCCTGGAGGATGGAAATCTCCGTTaGAAGATCCTGGCAACTTTTTGGATTTGCAGCGTTGGATTTAAG | + |
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Preference number: 6 (lower is better) Translates to: ELQMGDLLLEDGNLR*KILATFWICSVGFK Trigger: CTTAAATCCAACGCTGCAAATCCAAAAAGTTGCCAGGATCTTCAAACGGAGATTTCCATCCTCCAGGAGCAGATCTCCCATTTGCAGTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS CAA 90 bp | GATACCAAGGTCCTAGGTGTTTCAGTCCAATGTGCCACCCTGGTTTaGAGTTCTTTATTCTGGGCTTCAAGCACAGTGACCTTTTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: DTKVLGVSVQCATLV*SSLFWASSTVTFSF Trigger: GAAAGAAAAGGTCACTGTGCTTGAAGCCCAGAATAAAGAACTCAAAACCAGGGTGGCACATTGGACTGAAACACCTAGGACCTTGGTATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS GCA 72 bp | CTTAGATACCAAGGTCCTAGGTGTTTCAGTCCAATGTaGCACCCTGGTTTTGAGTTCTTTATTCTGGGCTTC | + |
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Preference number: 6 (lower is better) Translates to: LRYQGPRCFSPM*HPGFEFFILGF Trigger: GAAGCCCAGAATAAAGAACTCAAAACCAGGGTGGCACATTGGACTGAAACACCTAGGACCTTGGTATCTAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS CAA 72 bp | GTCCTAGGTGTTTCAGTCCAATGTGCCACCCTGGTTTaGAGTTCTTTATTGTTTTCCATCCTCTGTACACGG | + |
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Preference number: 6 (lower is better) Translates to: VLGVSVQCATLV*SSLLFSILCTR Trigger: CCGTGTACAGAGGATGGAAAACAATAAAGAACTCAAAACCAGGGTGGCACATTGGACTGAAACACCTAGGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080050.6 |
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| CDS TCA 72 bp | CTTGCATTGCCACAGCCTTCTTTTTCCTTAAACATGTaGTTTCGGATCTTTTCCAGTGTAGTTCGCATCTGT | + |
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Preference number: 6 (lower is better) Translates to: LALPQPSFSLNM*FRIFSSVVRIC Trigger: ACAGATGCGAACTACACTGGAAAAGATCCGAAATCACATGTTTAAGGAAAAAGAAGGCTGTGGCAATGCAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043929.11 ENSMUST00000080050.6 |
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| CDS GCA 72 bp | AATCTCCGTTTGAAGATCCTGGCAACTTTTTGGATTTaGAGCGTTGGATTTAAGCTGGAACAGTTTGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: NLRLKILATFWI*SVGFKLEQFAF Trigger: GAAAGCAAACTGTTCCAGCTTAAATCCAACGCTGCAAATCCAAAAAGTTGCCAGGATCTTCAAACGGAGATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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| CDS CCA 72 bp | GATGGAAATCTCCGTTTGAAGATCCTGGCAACTTTTTaGATTTGCAGCGTTGGATTTAAGCTGGAACAGTTT | + |
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Preference number: 6 (lower is better) Translates to: DGNLRLKILATF*ICSVGFKLEQF Trigger: AAACTGTTCCAGCTTAAATCCAACGCTGCAAATCCAAAAAGTTGCCAGGATCTTCAAACGGAGATTTCCATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043929.11 |
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