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Pregenerated sensors for CCDC25 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022035

Ensembl transcript IDs: ENSMUST00000022614.7

Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCTCAGCACCGCAGAGCTGTGGGCACTGTGTGGTGTGCTAGAATATaGATTTGCATGCCAGTCACAACCCTGCCAGCTTTTCTCTCTCTC +
Preference number: 1 (lower is better)
Translates to: AQHRRAVGTVWCARI*ICMPVTTLPAFLSL
Trigger: GAGAGAGAGAAAAGCTGGCAGGGTTGTGACTGGCATGCAAATCCATATTCTAGCACACCACACAGTGCCCACAGCTCTGCGGTGCTGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR GCA 90 bp CACCGCAGAGCTGTGGGCACTGTGTGGTGTGCTAGAATATGGATTTaGATGCCAGTCACAACCCTGCCAGCTTTTCTCTCTCTCCTCTCA +
Preference number: 1 (lower is better)
Translates to: HRRAVGTVWCARIWI*MPVTTLPAFLSLLS
Trigger: TGAGAGGAGAGAGAGAAAAGCTGGCAGGGTTGTGACTGGCATGCAAATCCATATTCTAGCACACCACACAGTGCCCACAGCTCTGCGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR GCA 90 bp GCAGAGCTGTGGGCACTGTGTGGTGTGCTAGAATATGGATTTGCATaGCAGTCACAACCCTGCCAGCTTTTCTCTCTCTCCTCTCACTGT +
Preference number: 1 (lower is better)
Translates to: AELWALCGVLEYGFA*QSQPCQLFSLSSHC
Trigger: ACAGTGAGAGGAGAGAGAGAAAAGCTGGCAGGGTTGTGACTGGCATGCAAATCCATATTCTAGCACACCACACAGTGCCCACAGCTCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR GCA 90 bp CTGTGTGGTGTGCTAGAATATGGATTTGCATGCCAGTCACAACCCTaGCAGCTTTTCTCTCTCTCCTCTCACTGTTCTGTTGAGTCTCTT +
Preference number: 1 (lower is better)
Translates to: LCGVLEYGFACQSQP*QLFSLSSHCSVESL
Trigger: AAGAGACTCAACAGAACAGTGAGAGGAGAGAGAGAAAAGCTGGCAGGGTTGTGACTGGCATGCAAATCCATATTCTAGCACACCACACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR CCA 90 bp TTCCCAAGCTTAGTTAAGATCAACTATGTAACTACGATGCTGAGATaGGGCCCTCACCTCACAGCAGAACCCTCAGAACAAGCTAAGAGC +
Preference number: 1 (lower is better)
Translates to: FPSLVKINYVTTMLR*GPHLTAEPSEQAKS
Trigger: GCTCTTAGCTTGTTCTGAGGGTTCTGCTGTGAGGTGAGGGCCCCATCTCAGCATCGTAGTTACATAGTTGATCTTAACTAAGCTTGGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR TCA 90 bp GTCTGCTCCAATGTCTATCTCAAAGACAAAGGCAGCCAGCCTTCATaGGGTACTGACGGATGTTCTGCCAAAAATATTCTCCTTTCCCTA +
Preference number: 1 (lower is better)
Translates to: VCSNVYLKDKGSQPS*GTDGCSAKNILLSL
Trigger: TAGGGAAAGGAGAATATTTTTGGCAGAACATCCGTCAGTACCTCATGAAGGCTGGCTGCCTTTGTCTTTGAGATAGACATTGGAGCAGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR TCA 90 bp TCCAAAGTAAGGAAACGAATGCCTTGCCTGGCTAGGGAAAATGCTTaGTTCGTTCTAAAGCTTGCAATCCATGGTGGACTTTTGTTTCAT +
Preference number: 1 (lower is better)
Translates to: SKVRKRMPCLARENA*FVLKLAIHGGLLFH
Trigger: ATGAAACAAAAGTCCACCATGGATTGCAAGCTTTAGAACGAATCAAGCATTTTCCCTAGCCAGGCAAGGCATTCGTTTCCTTACTTTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR TCA 90 bp TTGATTCGTTCTAAAGCTTGCAATCCATGGTGGACTTTTGTTTCATaGTACACTCCAGACAATCATGAGGCAATCTGTGTCACTCTCACT +
Preference number: 1 (lower is better)
Translates to: LIRSKACNPWWTFVS*YTPDNHEAICVTLT
Trigger: AGTGAGAGTGACACAGATTGCCTCATGATTGTCTGGAGTGTATCATGAAACAAAAGTCCACCATGGATTGCAAGCTTTAGAACGAATCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR-3UTR GCA 90 bp TGGCTCAGCACCGCAGAGCTGTGGGCACTGTGTGGTGTGCTAGAATATGGATTTTGCCAGTCACAACCCTaGCAGCTTTTCTCTCTCTCC +
Preference number: 2 (lower is better)
Translates to: WLSTAELWALCGVLEYGFCQSQP*QLFSLS
Trigger: GGAGAGAGAGAAAAGCTGGCAGGGTTGTGACTGGCA...AAATCCATATTCTAGCACACCACACAGTGCCCACAGCTCTGCGGTGCTGAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR-3UTR TCA 90 bp AAACGCATTTTACCACGTCTGTTCCCAGGACAGACCACAGCCACAGAAGCACTTGGCAGCCAGCCTTCATaGGGTACTGACGGATGTTCT +
Preference number: 2 (lower is better)
Translates to: KRILPRLFPGQTTATEALGSQPS*GTDGCS
Trigger: AGAACATCCGTCAGTACCTCATGAAGGCTGGCTGCC...AAGTGCTTCTGTGGCTGTGGTCTGTCCTGGGAACAGACGTGGTAAAATGCGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR-3UTR GCA 90 bp CATGCCAGTCACAACCCTGCCAGCTTTTCTCTCTCTCCTCTCACTGTTCTGTTGAGCTCTGCAATGGTCTaGACATTCATGTCTTCCCAG +
Preference number: 2 (lower is better)
Translates to: HASHNPASFSLSPLTVLLSSAMV*TFMSSQ
Trigger: CTGGGAAGACATGAATGTGCAGACCATTGCAGAGCT...CAACAGAACAGTGAGAGGAGAGAGAGAAAAGCTGGCAGGGTTGTGACTGGCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR-3UTR GCA 90 bp CATGCCAGTCACAACCCTGCCAGCTTTTCTCTCTCTCCTCTCACTGTTCTGTTGTTAAGTAAGCACTGCTaGTGCCTTCAAACCCACGTC +
Preference number: 2 (lower is better)
Translates to: HASHNPASFSLSPLTVLLLSKHC*CLQTHV
Trigger: GACGTGGGTTTGAAGGCAGCAGCAGTGCTTACTTAA...CAACAGAACAGTGAGAGGAGAGAGAGAAAAGCTGGCAGGGTTGTGACTGGCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR-3UTR CCA 90 bp CTGAAGAAATCATTTCTGCTGGCTCAGCACCGCAGAGCTGTGGGCACTGTGTGGTCAAAAGCTCTGCAATaGTCTGCACATTCATGTCTT +
Preference number: 2 (lower is better)
Translates to: LKKSFLLAQHRRAVGTVWSKALQ*SAHSCL
Trigger: AAGACATGAATGTGCAGACCATTGCAGAGCTTTTGA...CCACACAGTGCCCACAGCTCTGCGGTGCTGAGCCAGCAGAAATGATTTCTTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR-3UTR TCA 90 bp TTCGTTCTAAAGCTTGCAATCCATGGTGGACTTTTGTTTCATGATACACTCCAGAGGAGGGCCCTGGCCTaGGTAAGCCAGTCTTCTTCA +
Preference number: 2 (lower is better)
Translates to: FVLKLAIHGGLLFHDTLQRRALA*VSQSSS
Trigger: TGAAGAAGACTGGCTTACTCAGGCCAGGGCCCTCCT...CTGGAGTGTATCATGAAACAAAAGTCCACCATGGATTGCAAGCTTTAGAACGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR-3UTR GCA 90 bp GTACATCTGCTGAAGAAATCATTTCTGCTGGCTCAGCACCGCAGAGCTGTGGGCATTCGTTCTAAAGCTTaGAATCCATGGTGGACTTTT +
Preference number: 2 (lower is better)
Translates to: VHLLKKSFLLAQHRRAVGIRSKA*NPWWTF
Trigger: AAAAGTCCACCATGGATTGCAAGCTTTAGAACGAAT...GCCCACAGCTCTGCGGTGCTGAGCCAGCAGAAATGATTTCTTCAGCAGATGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR-3UTR GCA 90 bp CTTGCAATCCATGGTGGACTTTTGTTTCATGATACACTCCAGACAATCATGAGGTGCCAAATGCTGAAATaGAGGTTAAGTAAGCACTGC +
Preference number: 2 (lower is better)
Translates to: LAIHGGLLFHDTLQTIMRCQMLK*RLSKHC
Trigger: GCAGTGCTTACTTAACCTGCATTTCAGCATTTGGCA...CCTCATGATTGTCTGGAGTGTATCATGAAACAAAAGTCCACCATGGATTGCAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR CCA 72 bp CACCTCACAGCAGAACCCTCAGAACAAGCTAAGAGCTaGGCCAGCTACTCTGACGCCAGCAAGAGAGAACTT +
Preference number: 3 (lower is better)
Translates to: HLTAEPSEQAKS*ASYSDASKREL
Trigger: AAGTTCTCTCTTGCTGGCGTCAGAGTAGCTGGCCCAGCTCTTAGCTTGTTCTGAGGGTTCTGCTGTGAGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR CCA 72 bp CGCAGAGCTGTGGGCACTGTGTGGTGTGCTAGAATATaGATTTGCATGCCAGTCACAACCCTGCCAGCTTTT +
Preference number: 3 (lower is better)
Translates to: RRAVGTVWCARI*ICMPVTTLPAF
Trigger: AAAAGCTGGCAGGGTTGTGACTGGCATGCAAATCCATATTCTAGCACACCACACAGTGCCCACAGCTCTGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR GCA 72 bp TGGGCACTGTGTGGTGTGCTAGAATATGGATTTGCATaGCAGTCACAACCCTGCCAGCTTTTCTCTCTCTCC +
Preference number: 3 (lower is better)
Translates to: WALCGVLEYGFA*QSQPCQLFSLS
Trigger: GGAGAGAGAGAAAAGCTGGCAGGGTTGTGACTGGCATGCAAATCCATATTCTAGCACACCACACAGTGCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR GCA 72 bp GCTGTGGGCACTGTGTGGTGTGCTAGAATATGGATTTaGATGCCAGTCACAACCCTGCCAGCTTTTCTCTCT +
Preference number: 3 (lower is better)
Translates to: AVGTVWCARIWI*MPVTTLPAFLS
Trigger: AGAGAGAAAAGCTGGCAGGGTTGTGACTGGCATGCAAATCCATATTCTAGCACACCACACAGTGCCCACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR GCA 72 bp CAGAACCTAGATGAAATCAAAAGCTCTGCAATGGTCTaGACATTCATGTCTTCCCAGGGTCCGTTGCTCAGC +
Preference number: 3 (lower is better)
Translates to: QNLDEIKSSAMV*TFMSSQGPLLS
Trigger: GCTGAGCAACGGACCCTGGGAAGACATGAATGTGCAGACCATTGCAGAGCTTTTGATTTCATCTAGGTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR TCA 72 bp TCTCAAAGACAAAGGCAGCCAGCCTTCATGAGGTACTaGCGGATGTTCTGCCAAAAATATTCTCCTTTCCCT +
Preference number: 3 (lower is better)
Translates to: SQRQRQPAFMRY*RMFCQKYSPFP
Trigger: AGGGAAAGGAGAATATTTTTGGCAGAACATCCGTCAGTACCTCATGAAGGCTGGCTGCCTTTGTCTTTGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR TCA 72 bp AGGAAACGAATGCCTTGCCTGGCTAGGGAAAATGCTTaGTTCGTTCTAAAGCTTGCAATCCATGGTGGACTT +
Preference number: 3 (lower is better)
Translates to: RKRMPCLARENA*FVLKLAIHGGL
Trigger: AAGTCCACCATGGATTGCAAGCTTTAGAACGAATCAAGCATTTTCCCTAGCCAGGCAAGGCATTCGTTTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR TCA 72 bp TCTAAAGCTTGCAATCCATGGTGGACTTTTGTTTCATaGTACACTCCAGACAATCATGAGGCAATCTGTGTC +
Preference number: 3 (lower is better)
Translates to: SKACNPWWTFVS*YTPDNHEAICV
Trigger: GACACAGATTGCCTCATGATTGTCTGGAGTGTATCATGAAACAAAAGTCCACCATGGATTGCAAGCTTTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
3UTR TCA 72 bp TTTTGGTTGGTTGGTTTCTGTAATTCAGAACCTAGATaGAATCAAAAGCTCTGCAATGGTCTGCACATTCAT +
Preference number: 3 (lower is better)
Translates to: FWLVGFCNSEPR*NQKLCNGLHIH
Trigger: ATGAATGTGCAGACCATTGCAGAGCTTTTGATTTCATCTAGGTTCTGAATTACAGAAACCAACCAACCAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
CDS-3UTR CCA 90 bp AAACGCATTTTACCACGTCTGTTCCCAGGACAGACCACAGCCACAGAAGCACTTAATCGTAGGTACACATaGGCCGAAGAGAGTTTGTCC +
Preference number: 4 (lower is better)
Translates to: KRILPRLFPGQTTATEALNRRYT*AEESLS
Trigger: GGACAAACTCTCTTCGGCCCATGTGTACCTACGATT...AAGTGCTTCTGTGGCTGTGGTCTGTCCTGGGAACAGACGTGGTAAAATGCGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
CDS-3UTR TCA 90 bp CTGAAGAAATCATTTCTGCTGGCTCAGCACCGCAGAGCTGTGGGCACTGTGTGGGAATCGTTACCATCTTaGTTTGAGGACATATTCTCA +
Preference number: 4 (lower is better)
Translates to: LKKSFLLAQHRRAVGTVWESLPS*FEDIFS
Trigger: TGAGAATATGTCCTCAAATCAAGATGGTAACGATTC...CCACACAGTGCCCACAGCTCTGCGGTGCTGAGCCAGCAGAAATGATTTCTTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
CDS-3UTR TCA 90 bp CGTCTGCTCCAATGTCTATCTCAAAGACAAAGGCAGCCAGCCTTCATGAGGTACTTCCTTTTCATCTCCTaGATCTGGGCTTTCTTCTCA +
Preference number: 4 (lower is better)
Translates to: RLLQCLSQRQRQPAFMRYFLFIS*IWAFFS
Trigger: TGAGAAGAAAGCCCAGATTCAGGAGATGAAAAGGAA...GTACCTCATGAAGGCTGGCTGCCTTTGTCTTTGAGATAGACATTGGAGCAGACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
CDS-3UTR GCA 90 bp CTTGCAATCCATGGTGGACTTTTGTTTCATGATACACTCCAGACAATCATGAGGTCTGCCTTCCTTCTCTaGTGCAAGGTCTGGAAACTT +
Preference number: 4 (lower is better)
Translates to: LAIHGGLLFHDTLQTIMRSAFLL*CKVWKL
Trigger: AAGTTTCCAGACCTTGCAGCAGAGAAGGAAGGCAGA...CCTCATGATTGTCTGGAGTGTATCATGAAACAAAAGTCCACCATGGATTGCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7
CDS-3UTR TCA 90 bp GGGGCTCCCTTAAACACTAACAAAAAGGTTATCTATCTACTGGGTAGCAGGTGGAATAGTGTAAGTAGATaGATTAACGCTGCTGCTGGT +
Preference number: 4 (lower is better)
Translates to: GAPLNTNKKVIYLLGSRWNSVSR*INAAAG
Trigger: ACCAGCAGCAGCGTTAATTCATCTACTTACACTATT...CCACCTGCTACCCAGTAGATAGATAACCTTTTTGTTAGTGTTTAAGGGAGCCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022614.7