Pregenerated sensors for CCDC25 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022035Ensembl transcript IDs: ENSMUST00000022614.7
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | GCTCAGCACCGCAGAGCTGTGGGCACTGTGTGGTGTGCTAGAATATaGATTTGCATGCCAGTCACAACCCTGCCAGCTTTTCTCTCTCTC | + |
Preference number: 1 (lower is better) Translates to: AQHRRAVGTVWCARI*ICMPVTTLPAFLSL Trigger: GAGAGAGAGAAAAGCTGGCAGGGTTGTGACTGGCATGCAAATCCATATTCTAGCACACCACACAGTGCCCACAGCTCTGCGGTGCTGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR GCA 90 bp | CACCGCAGAGCTGTGGGCACTGTGTGGTGTGCTAGAATATGGATTTaGATGCCAGTCACAACCCTGCCAGCTTTTCTCTCTCTCCTCTCA | + |
Preference number: 1 (lower is better) Translates to: HRRAVGTVWCARIWI*MPVTTLPAFLSLLS Trigger: TGAGAGGAGAGAGAGAAAAGCTGGCAGGGTTGTGACTGGCATGCAAATCCATATTCTAGCACACCACACAGTGCCCACAGCTCTGCGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR GCA 90 bp | GCAGAGCTGTGGGCACTGTGTGGTGTGCTAGAATATGGATTTGCATaGCAGTCACAACCCTGCCAGCTTTTCTCTCTCTCCTCTCACTGT | + |
Preference number: 1 (lower is better) Translates to: AELWALCGVLEYGFA*QSQPCQLFSLSSHC Trigger: ACAGTGAGAGGAGAGAGAGAAAAGCTGGCAGGGTTGTGACTGGCATGCAAATCCATATTCTAGCACACCACACAGTGCCCACAGCTCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR GCA 90 bp | CTGTGTGGTGTGCTAGAATATGGATTTGCATGCCAGTCACAACCCTaGCAGCTTTTCTCTCTCTCCTCTCACTGTTCTGTTGAGTCTCTT | + |
Preference number: 1 (lower is better) Translates to: LCGVLEYGFACQSQP*QLFSLSSHCSVESL Trigger: AAGAGACTCAACAGAACAGTGAGAGGAGAGAGAGAAAAGCTGGCAGGGTTGTGACTGGCATGCAAATCCATATTCTAGCACACCACACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR CCA 90 bp | TTCCCAAGCTTAGTTAAGATCAACTATGTAACTACGATGCTGAGATaGGGCCCTCACCTCACAGCAGAACCCTCAGAACAAGCTAAGAGC | + |
Preference number: 1 (lower is better) Translates to: FPSLVKINYVTTMLR*GPHLTAEPSEQAKS Trigger: GCTCTTAGCTTGTTCTGAGGGTTCTGCTGTGAGGTGAGGGCCCCATCTCAGCATCGTAGTTACATAGTTGATCTTAACTAAGCTTGGGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR TCA 90 bp | GTCTGCTCCAATGTCTATCTCAAAGACAAAGGCAGCCAGCCTTCATaGGGTACTGACGGATGTTCTGCCAAAAATATTCTCCTTTCCCTA | + |
Preference number: 1 (lower is better) Translates to: VCSNVYLKDKGSQPS*GTDGCSAKNILLSL Trigger: TAGGGAAAGGAGAATATTTTTGGCAGAACATCCGTCAGTACCTCATGAAGGCTGGCTGCCTTTGTCTTTGAGATAGACATTGGAGCAGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR TCA 90 bp | TCCAAAGTAAGGAAACGAATGCCTTGCCTGGCTAGGGAAAATGCTTaGTTCGTTCTAAAGCTTGCAATCCATGGTGGACTTTTGTTTCAT | + |
Preference number: 1 (lower is better) Translates to: SKVRKRMPCLARENA*FVLKLAIHGGLLFH Trigger: ATGAAACAAAAGTCCACCATGGATTGCAAGCTTTAGAACGAATCAAGCATTTTCCCTAGCCAGGCAAGGCATTCGTTTCCTTACTTTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR TCA 90 bp | TTGATTCGTTCTAAAGCTTGCAATCCATGGTGGACTTTTGTTTCATaGTACACTCCAGACAATCATGAGGCAATCTGTGTCACTCTCACT | + |
Preference number: 1 (lower is better) Translates to: LIRSKACNPWWTFVS*YTPDNHEAICVTLT Trigger: AGTGAGAGTGACACAGATTGCCTCATGATTGTCTGGAGTGTATCATGAAACAAAAGTCCACCATGGATTGCAAGCTTTAGAACGAATCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR-3UTR GCA 90 bp | TGGCTCAGCACCGCAGAGCTGTGGGCACTGTGTGGTGTGCTAGAATATGGATTTTGCCAGTCACAACCCTaGCAGCTTTTCTCTCTCTCC | + |
Preference number: 2 (lower is better) Translates to: WLSTAELWALCGVLEYGFCQSQP*QLFSLS Trigger: GGAGAGAGAGAAAAGCTGGCAGGGTTGTGACTGGCA...AAATCCATATTCTAGCACACCACACAGTGCCCACAGCTCTGCGGTGCTGAGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR-3UTR TCA 90 bp | AAACGCATTTTACCACGTCTGTTCCCAGGACAGACCACAGCCACAGAAGCACTTGGCAGCCAGCCTTCATaGGGTACTGACGGATGTTCT | + |
Preference number: 2 (lower is better) Translates to: KRILPRLFPGQTTATEALGSQPS*GTDGCS Trigger: AGAACATCCGTCAGTACCTCATGAAGGCTGGCTGCC...AAGTGCTTCTGTGGCTGTGGTCTGTCCTGGGAACAGACGTGGTAAAATGCGTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR-3UTR GCA 90 bp | CATGCCAGTCACAACCCTGCCAGCTTTTCTCTCTCTCCTCTCACTGTTCTGTTGAGCTCTGCAATGGTCTaGACATTCATGTCTTCCCAG | + |
Preference number: 2 (lower is better) Translates to: HASHNPASFSLSPLTVLLSSAMV*TFMSSQ Trigger: CTGGGAAGACATGAATGTGCAGACCATTGCAGAGCT...CAACAGAACAGTGAGAGGAGAGAGAGAAAAGCTGGCAGGGTTGTGACTGGCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR-3UTR GCA 90 bp | CATGCCAGTCACAACCCTGCCAGCTTTTCTCTCTCTCCTCTCACTGTTCTGTTGTTAAGTAAGCACTGCTaGTGCCTTCAAACCCACGTC | + |
Preference number: 2 (lower is better) Translates to: HASHNPASFSLSPLTVLLLSKHC*CLQTHV Trigger: GACGTGGGTTTGAAGGCAGCAGCAGTGCTTACTTAA...CAACAGAACAGTGAGAGGAGAGAGAGAAAAGCTGGCAGGGTTGTGACTGGCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR-3UTR CCA 90 bp | CTGAAGAAATCATTTCTGCTGGCTCAGCACCGCAGAGCTGTGGGCACTGTGTGGTCAAAAGCTCTGCAATaGTCTGCACATTCATGTCTT | + |
Preference number: 2 (lower is better) Translates to: LKKSFLLAQHRRAVGTVWSKALQ*SAHSCL Trigger: AAGACATGAATGTGCAGACCATTGCAGAGCTTTTGA...CCACACAGTGCCCACAGCTCTGCGGTGCTGAGCCAGCAGAAATGATTTCTTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR-3UTR TCA 90 bp | TTCGTTCTAAAGCTTGCAATCCATGGTGGACTTTTGTTTCATGATACACTCCAGAGGAGGGCCCTGGCCTaGGTAAGCCAGTCTTCTTCA | + |
Preference number: 2 (lower is better) Translates to: FVLKLAIHGGLLFHDTLQRRALA*VSQSSS Trigger: TGAAGAAGACTGGCTTACTCAGGCCAGGGCCCTCCT...CTGGAGTGTATCATGAAACAAAAGTCCACCATGGATTGCAAGCTTTAGAACGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR-3UTR GCA 90 bp | GTACATCTGCTGAAGAAATCATTTCTGCTGGCTCAGCACCGCAGAGCTGTGGGCATTCGTTCTAAAGCTTaGAATCCATGGTGGACTTTT | + |
Preference number: 2 (lower is better) Translates to: VHLLKKSFLLAQHRRAVGIRSKA*NPWWTF Trigger: AAAAGTCCACCATGGATTGCAAGCTTTAGAACGAAT...GCCCACAGCTCTGCGGTGCTGAGCCAGCAGAAATGATTTCTTCAGCAGATGTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR-3UTR GCA 90 bp | CTTGCAATCCATGGTGGACTTTTGTTTCATGATACACTCCAGACAATCATGAGGTGCCAAATGCTGAAATaGAGGTTAAGTAAGCACTGC | + |
Preference number: 2 (lower is better) Translates to: LAIHGGLLFHDTLQTIMRCQMLK*RLSKHC Trigger: GCAGTGCTTACTTAACCTGCATTTCAGCATTTGGCA...CCTCATGATTGTCTGGAGTGTATCATGAAACAAAAGTCCACCATGGATTGCAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR CCA 72 bp | CACCTCACAGCAGAACCCTCAGAACAAGCTAAGAGCTaGGCCAGCTACTCTGACGCCAGCAAGAGAGAACTT | + |
Preference number: 3 (lower is better) Translates to: HLTAEPSEQAKS*ASYSDASKREL Trigger: AAGTTCTCTCTTGCTGGCGTCAGAGTAGCTGGCCCAGCTCTTAGCTTGTTCTGAGGGTTCTGCTGTGAGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR CCA 72 bp | CGCAGAGCTGTGGGCACTGTGTGGTGTGCTAGAATATaGATTTGCATGCCAGTCACAACCCTGCCAGCTTTT | + |
Preference number: 3 (lower is better) Translates to: RRAVGTVWCARI*ICMPVTTLPAF Trigger: AAAAGCTGGCAGGGTTGTGACTGGCATGCAAATCCATATTCTAGCACACCACACAGTGCCCACAGCTCTGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR GCA 72 bp | TGGGCACTGTGTGGTGTGCTAGAATATGGATTTGCATaGCAGTCACAACCCTGCCAGCTTTTCTCTCTCTCC | + |
Preference number: 3 (lower is better) Translates to: WALCGVLEYGFA*QSQPCQLFSLS Trigger: GGAGAGAGAGAAAAGCTGGCAGGGTTGTGACTGGCATGCAAATCCATATTCTAGCACACCACACAGTGCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR GCA 72 bp | GCTGTGGGCACTGTGTGGTGTGCTAGAATATGGATTTaGATGCCAGTCACAACCCTGCCAGCTTTTCTCTCT | + |
Preference number: 3 (lower is better) Translates to: AVGTVWCARIWI*MPVTTLPAFLS Trigger: AGAGAGAAAAGCTGGCAGGGTTGTGACTGGCATGCAAATCCATATTCTAGCACACCACACAGTGCCCACAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR GCA 72 bp | CAGAACCTAGATGAAATCAAAAGCTCTGCAATGGTCTaGACATTCATGTCTTCCCAGGGTCCGTTGCTCAGC | + |
Preference number: 3 (lower is better) Translates to: QNLDEIKSSAMV*TFMSSQGPLLS Trigger: GCTGAGCAACGGACCCTGGGAAGACATGAATGTGCAGACCATTGCAGAGCTTTTGATTTCATCTAGGTTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR TCA 72 bp | TCTCAAAGACAAAGGCAGCCAGCCTTCATGAGGTACTaGCGGATGTTCTGCCAAAAATATTCTCCTTTCCCT | + |
Preference number: 3 (lower is better) Translates to: SQRQRQPAFMRY*RMFCQKYSPFP Trigger: AGGGAAAGGAGAATATTTTTGGCAGAACATCCGTCAGTACCTCATGAAGGCTGGCTGCCTTTGTCTTTGAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR TCA 72 bp | AGGAAACGAATGCCTTGCCTGGCTAGGGAAAATGCTTaGTTCGTTCTAAAGCTTGCAATCCATGGTGGACTT | + |
Preference number: 3 (lower is better) Translates to: RKRMPCLARENA*FVLKLAIHGGL Trigger: AAGTCCACCATGGATTGCAAGCTTTAGAACGAATCAAGCATTTTCCCTAGCCAGGCAAGGCATTCGTTTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR TCA 72 bp | TCTAAAGCTTGCAATCCATGGTGGACTTTTGTTTCATaGTACACTCCAGACAATCATGAGGCAATCTGTGTC | + |
Preference number: 3 (lower is better) Translates to: SKACNPWWTFVS*YTPDNHEAICV Trigger: GACACAGATTGCCTCATGATTGTCTGGAGTGTATCATGAAACAAAAGTCCACCATGGATTGCAAGCTTTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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3UTR TCA 72 bp | TTTTGGTTGGTTGGTTTCTGTAATTCAGAACCTAGATaGAATCAAAAGCTCTGCAATGGTCTGCACATTCAT | + |
Preference number: 3 (lower is better) Translates to: FWLVGFCNSEPR*NQKLCNGLHIH Trigger: ATGAATGTGCAGACCATTGCAGAGCTTTTGATTTCATCTAGGTTCTGAATTACAGAAACCAACCAACCAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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CDS-3UTR CCA 90 bp | AAACGCATTTTACCACGTCTGTTCCCAGGACAGACCACAGCCACAGAAGCACTTAATCGTAGGTACACATaGGCCGAAGAGAGTTTGTCC | + |
Preference number: 4 (lower is better) Translates to: KRILPRLFPGQTTATEALNRRYT*AEESLS Trigger: GGACAAACTCTCTTCGGCCCATGTGTACCTACGATT...AAGTGCTTCTGTGGCTGTGGTCTGTCCTGGGAACAGACGTGGTAAAATGCGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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CDS-3UTR TCA 90 bp | CTGAAGAAATCATTTCTGCTGGCTCAGCACCGCAGAGCTGTGGGCACTGTGTGGGAATCGTTACCATCTTaGTTTGAGGACATATTCTCA | + |
Preference number: 4 (lower is better) Translates to: LKKSFLLAQHRRAVGTVWESLPS*FEDIFS Trigger: TGAGAATATGTCCTCAAATCAAGATGGTAACGATTC...CCACACAGTGCCCACAGCTCTGCGGTGCTGAGCCAGCAGAAATGATTTCTTCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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CDS-3UTR TCA 90 bp | CGTCTGCTCCAATGTCTATCTCAAAGACAAAGGCAGCCAGCCTTCATGAGGTACTTCCTTTTCATCTCCTaGATCTGGGCTTTCTTCTCA | + |
Preference number: 4 (lower is better) Translates to: RLLQCLSQRQRQPAFMRYFLFIS*IWAFFS Trigger: TGAGAAGAAAGCCCAGATTCAGGAGATGAAAAGGAA...GTACCTCATGAAGGCTGGCTGCCTTTGTCTTTGAGATAGACATTGGAGCAGACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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CDS-3UTR GCA 90 bp | CTTGCAATCCATGGTGGACTTTTGTTTCATGATACACTCCAGACAATCATGAGGTCTGCCTTCCTTCTCTaGTGCAAGGTCTGGAAACTT | + |
Preference number: 4 (lower is better) Translates to: LAIHGGLLFHDTLQTIMRSAFLL*CKVWKL Trigger: AAGTTTCCAGACCTTGCAGCAGAGAAGGAAGGCAGA...CCTCATGATTGTCTGGAGTGTATCATGAAACAAAAGTCCACCATGGATTGCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |
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CDS-3UTR TCA 90 bp | GGGGCTCCCTTAAACACTAACAAAAAGGTTATCTATCTACTGGGTAGCAGGTGGAATAGTGTAAGTAGATaGATTAACGCTGCTGCTGGT | + |
Preference number: 4 (lower is better) Translates to: GAPLNTNKKVIYLLGSRWNSVSR*INAAAG Trigger: ACCAGCAGCAGCGTTAATTCATCTACTTACACTATT...CCACCTGCTACCCAGTAGATAGATAACCTTTTTGTTAGTGTTTAAGGGAGCCCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022614.7 |