Pregenerated sensors for CCDC126 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050786Ensembl transcript IDs: ENSMUST00000055559.8, ENSMUST00000114491.2
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGTGCGCTGCGATGGATGGAATCCACAGTGGTAGCCGTGCAAGGTaGCCTTCACTGCTATCTGACGCTGCCCGAAACACTCGTCCTTTT | + |
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Preference number: 1 (lower is better) Translates to: RCAAMDGIHSGSRAR*PSLLSDAARNTRPF Trigger: AAAAGGACGAGTGTTTCGGGCAGCGTCAGATAGCAGTGAAGGGCACCTTGCACGGCTACCACTGTGGATTCCATCCATCGCAGCGCACCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114491.2 |
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| 3UTR TCA 90 bp | TACCGGCACCAAATTCCCATTGGTGCCATTGGTAGTGTTGGTGGCTaGACCGTTCACAACAATATAGTCGACTTTGCTCTCCAGCTTCAC | + |
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Preference number: 1 (lower is better) Translates to: YRHQIPIGAIGSVGG*TVHNNIVDFALQLH Trigger: GTGAAGCTGGAGAGCAAAGTCGACTATATTGTTGTGAACGGTTCAGCCACCAACACTACCAATGGCACCAATGGGAATTTGGTGCCGGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114491.2 |
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| 3UTR CCA 90 bp | CAGGACTCCTCAGAGACCGAACGGTACTGCAGAATCTATGGGCAATaGGGCATCATTTCTTTACATAAAGGTACAGGGAAGACATTTCAG | + |
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Preference number: 1 (lower is better) Translates to: QDSSETERYCRIYGQ*GIISLHKGTGKTFQ Trigger: CTGAAATGTCTTCCCTGTACCTTTATGTAAAGAAATGATGCCCCATTGCCCATAGATTCTGCAGTACCGTTCGGTCTCTGAGGAGTCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR TCA 90 bp | CAAACTAATAATGCCTGCGATTATATATACAGAATTAACATCCTATaGATCCAGCAAGCTCCTTGGAGATGTGTAGAGCTTTTATTGTCA | + |
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Preference number: 1 (lower is better) Translates to: QTNNACDYIYRINIL*IQQAPWRCVELLLS Trigger: TGACAATAAAAGCTCTACACATCTCCAAGGAGCTTGCTGGATTCATAGGATGTTAATTCTGTATATATAATCGCAGGCATTATTAGTTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR-3UTR CCA 90 bp | CTGCCCAGGCTAGCATTGAGCTTGCAGCTCTCCTGTCCCAGCCTCCCTGGTTCCCACTCGTCCTTTTGTTaGTCGTTACCGGCACCAAAT | + |
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Preference number: 2 (lower is better) Translates to: LPRLALSLQLSCPSLPGSHSSFC*SLPAPN Trigger: ATTTGGTGCCGGTAACGACCAACAAAAGGACGAGTG...GGAACCAGGGAGGCTGGGACAGGAGAGCTGCAAGCTCAATGCTAGCCTGGGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114491.2 |
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| 3UTR CAA 90 bp | GCCCTTCACTGCTATCTGACGCTGCCCGAAACACTCGTCCTTTTGTaGGTCGTTACCGGCACCAAATTCCCATTGGTGCCATTGGTAGTG | + |
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Preference number: 2 (lower is better) Translates to: ALHCYLTLPETLVLL*VVTGTKFPLVPLVV Trigger: CACTACCAATGGCACCAATGGGAATTTGGTGCCGGTAACGACCAACAAAAGGACGAGTGTTTCGGGCAGCGTCAGATAGCAGTGAAGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114491.2 |
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| 3UTR CAA 90 bp | GGTGCCCTTCACTGCTATCTGACGCTGCCCGAAACACTCGTCCTTTaGTTGGTCGTTACCGGCACCAAATTCCCATTGGTGCCATTGGTA | + |
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Preference number: 2 (lower is better) Translates to: GALHCYLTLPETLVL*LVVTGTKFPLVPLV Trigger: TACCAATGGCACCAATGGGAATTTGGTGCCGGTAACGACCAACAAAAGGACGAGTGTTTCGGGCAGCGTCAGATAGCAGTGAAGGGCACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114491.2 |
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| 3UTR-3UTR CCA 90 bp | CCTCCCTGGTTCCATGGCTACAGGCATGTGACACTGAGATTCATTTTCAAACCACTGTCCCAGCCTCCCTaGTTCCATGGCTACAGGCAT | + |
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Preference number: 2 (lower is better) Translates to: PPWFHGYRHVTLRFIFKPLSQPP*FHGYRH Trigger: ATGCCTGTAGCCATGGAACCAGGGAGGCTGGGACAG...TGGTTTGAAAATGAATCTCAGTGTCACATGCCTGTAGCCATGGAACCAGGGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR-3UTR GCA 90 bp | CTGCTATCTGACGCTGCCCGAAACACTCGTCCTTTTGTTGGTCGTTACCGGCACAGCTTCACCAAGCGCTaGAAAATGTCATCTAAGAGG | + |
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Preference number: 2 (lower is better) Translates to: LLSDAARNTRPFVGRYRHSFTKR*KMSSKR Trigger: CCTCTTAGATGACATTTTGCAGCGCTTGGTGAAGCT...GTGCCGGTAACGACCAACAAAAGGACGAGTGTTTCGGGCAGCGTCAGATAGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114491.2 |
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| 3UTR-3UTR GCA 90 bp | TGGTTTTTACATAGGGTCTGCTCTGCTGCCCAGGCTAGCATTGAGCTTGCAGCTCAATATAGTCGACTTTaGTCTCCAGCTTCACCAAGC | + |
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Preference number: 2 (lower is better) Translates to: WFLHRVCSAAQASIELAAQYSRL*SPASPS Trigger: GCTTGGTGAAGCTGGAGAGCAAAGTCGACTATATTG...AGCTGCAAGCTCAATGCTAGCCTGGGCAGCAGAGCAGACCCTATGTAAAAACCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114491.2 |
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| 3UTR CAA 90 bp | GAAACACTCGTCCTTTTGTTGGTCGTTACCGGCACCAAATTCCCATaGGTGCCATTGGTAGTGTTGGTGGCTGAACCGTTCACAACAATA | + |
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Preference number: 2 (lower is better) Translates to: ETLVLLLVVTGTKFP*VPLVVLVAEPFTTI Trigger: TATTGTTGTGAACGGTTCAGCCACCAACACTACCAATGGCACCAATGGGAATTTGGTGCCGGTAACGACCAACAAAAGGACGAGTGTTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114491.2 |
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| 3UTR-3UTR CCA 90 bp | TCCACCAAAATAACCGAAGAACACTTACCAGAATATGGAAATGATGGACTTTCCGCCTCCCTGGTTCCATaGCTACAGGCATGTGACACT | + |
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Preference number: 2 (lower is better) Translates to: STKITEEHLPEYGNDGLSASLVP*LQACDT Trigger: AGTGTCACATGCCTGTAGCCATGGAACCAGGGAGGC...GGAAAGTCCATCATTTCCATATTCTGGTAAGTGTTCTTCGGTTATTTTGGTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR-3UTR GCA 90 bp | TTTATTATATACATCTATCTGGCTAAAGTCCTCAAGCCCTTTCCTTCTTCCACCTTTTTACATAGGGTCTaGTCTGCTGCCCAGGCTAGC | + |
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Preference number: 2 (lower is better) Translates to: FIIYIYLAKVLKPFPSSTFLHRV*SAAQAS Trigger: GCTAGCCTGGGCAGCAGAGCAGACCCTATGTAAAAA...GGTGGAAGAAGGAAAGGGCTTGAGGACTTTAGCCAGATAGATGTATATAATAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR-3UTR GCA 90 bp | TTTCTATTAAATTGTCCCCTGACGGTTAGCTATGGACAGTGGCTGCTACCCATTTCCATGTCTTTCTGGTaGTTTTGTTTCTCGATCTCT | + |
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Preference number: 2 (lower is better) Translates to: FLLNCPLTVSYGQWLLPISMSFW*FCFSIS Trigger: AGAGATCGAGAAACAAAAGCACCAGAAAGACATGGA...AATGGGTAGCAGCCACTGTCCATAGCTAACCGTCAGGGGACAATTTAATAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR CAA 90 bp | CTCGATCTCTGTACAGAGATGACCTCCCTGCTTACCATATCAACCTaGTTAACCAAATTCCTGTTAAGAATACAGAACAGCATTAAAGAG | + |
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Preference number: 2 (lower is better) Translates to: LDLCTEMTSLLTIST*LTKFLLRIQNSIKE Trigger: CTCTTTAATGCTGTTCTGTATTCTTAACAGGAATTTGGTTAACAAGGTTGATATGGTAAGCAGGGAGGTCATCTCTGTACAGAGATCGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR-3UTR CCA 90 bp | ATTATATACATCTATCTGGCTAAAGTCCTCAAGCCCTTTCCTTCTTCCACCAAAATCCAGCAAGCTCCTTaGAGATGTGTAGAGCTTTTA | + |
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Preference number: 2 (lower is better) Translates to: IIYIYLAKVLKPFPSSTKIQQAP*RCVELL Trigger: TAAAAGCTCTACACATCTCCAAGGAGCTTGCTGGAT...TTTGGTGGAAGAAGGAAAGGGCTTGAGGACTTTAGCCAGATAGATGTATATAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR-3UTR CCA 90 bp | TCCACCAAAATAACCGAAGAACACTTACCAGAATATGGAAATGATGGACTTTCCGACTCCATGTCTTTCTaGTGCTTTTGTTTCTCGATC | + |
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Preference number: 2 (lower is better) Translates to: STKITEEHLPEYGNDGLSDSMSF*CFCFSI Trigger: GATCGAGAAACAAAAGCACCAGAAAGACATGGAGTC...GGAAAGTCCATCATTTCCATATTCTGGTAAGTGTTCTTCGGTTATTTTGGTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR-3UTR CCA 90 bp | TCCACCAAAATAACCGAAGAACACTTACCAGAATATGGAAATGATGGACTTTCCGTTAGCTATGGACAGTaGCTGCTACCCATTTCAAAA | + |
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Preference number: 2 (lower is better) Translates to: STKITEEHLPEYGNDGLSVSYGQ*LLPISK Trigger: TTTTGAAATGGGTAGCAGCCACTGTCCATAGCTAAC...GGAAAGTCCATCATTTCCATATTCTGGTAAGTGTTCTTCGGTTATTTTGGTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR-3UTR GCA 90 bp | TCCACCAAAATAACCGAAGAACACTTACCAGAATATGGAAATGATGGACTTTCCGCTATGGACAGTGGCTaGTACCCATTTCAAAATTAT | + |
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Preference number: 2 (lower is better) Translates to: STKITEEHLPEYGNDGLSAMDSG*YPFQNY Trigger: ATAATTTTGAAATGGGTAGCAGCCACTGTCCATAGC...GGAAAGTCCATCATTTCCATATTCTGGTAAGTGTTCTTCGGTTATTTTGGTGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR-3UTR CCA 90 bp | GTGACACTGAGATTCATTTTCAAACCAACAGCCATGATTGTGAAAAATCATGCAGTTAGCTATGGACAGTaGCTGCTACCCATTTCAAAA | + |
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Preference number: 2 (lower is better) Translates to: VTLRFIFKPTAMIVKNHAVSYGQ*LLPISK Trigger: TTTTGAAATGGGTAGCAGCCACTGTCCATAGCTAAC...TGCATGATTTTTCACAATCATGGCTGTTGGTTTGAAAATGAATCTCAGTGTCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR-3UTR GCA 90 bp | TTTATTTCATCCCTGAAAGCAATGAAATCAGAGATGCTCAGGACTCCTCAGAGATTCCAAGCACTTCTGTaGAGCACAAATAACATTTAT | + |
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Preference number: 2 (lower is better) Translates to: FISSLKAMKSEMLRTPQRFQALL*STNNIY Trigger: ATAAATGTTATTTGTGCTGCACAGAAGTGCTTGGAA...TCTCTGAGGAGTCCTGAGCATCTCTGATTTCATTGCTTTCAGGGATGAAATAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR-3UTR CCA 90 bp | AACACTTACCAGAATATGGAAATGATGGACTTTCCTAATGGTTTTTACATAGGGATCCAGCAAGCTCCTTaGAGATGTGTAGAGCTTTTA | + |
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Preference number: 2 (lower is better) Translates to: NTYQNMEMMDFPNGFYIGIQQAP*RCVELL Trigger: TAAAAGCTCTACACATCTCCAAGGAGCTTGCTGGAT...CCCTATGTAAAAACCATTAGGAAAGTCCATCATTTCCATATTCTGGTAAGTGTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR-3UTR GCA 90 bp | CTAGAATTAACCAAGTCAAGATTTCTTGTGCTGTATACAGTAGCTGTTTCTCTATCCATGTCTTTCTGGTaGTTTTGTTTCTCGATCTCT | + |
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Preference number: 2 (lower is better) Translates to: LELTKSRFLVLYTVAVSLSMSFW*FCFSIS Trigger: AGAGATCGAGAAACAAAAGCACCAGAAAGACATGGA...TAGAGAAACAGCTACTGTATACAGCACAAGAAATCTTGACTTGGTTAATTCTAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR GCA 72 bp | GCGATGGATGGAATCCACAGTGGTAGCCGTGCAAGGTaGCCTTCACTGCTATCTGACGCTGCCCGAAACACT | + |
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Preference number: 3 (lower is better) Translates to: AMDGIHSGSRAR*PSLLSDAARNT Trigger: AGTGTTTCGGGCAGCGTCAGATAGCAGTGAAGGGCACCTTGCACGGCTACCACTGTGGATTCCATCCATCGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114491.2 |
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| 3UTR CCA 72 bp | AGCATTGAGCTTGCAGCTCTCCTGTCCCAGCCTCCCTaGTTCCATGGCTACAGGCATGTGACACTGAGATTC | + |
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Preference number: 3 (lower is better) Translates to: SIELAALLSQPP*FHGYRHVTLRF Trigger: GAATCTCAGTGTCACATGCCTGTAGCCATGGAACCAGGGAGGCTGGGACAGGAGAGCTGCAAGCTCAATGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR GCA 72 bp | CAAGTATTACTCTGTCCTAGGCAGCAGTTTAAGAGGTaGGCTGCGATGGATGGAATCCACAGTGGTAGCCGT | + |
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Preference number: 3 (lower is better) Translates to: QVLLCPRQQFKR*AAMDGIHSGSR Trigger: ACGGCTACCACTGTGGATTCCATCCATCGCAGCGCACCTCTTAAACTGCTGCCTAGGACAGAGTAATACTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR-3UTR CAA 90 bp | GCCTCCCTGGTTCCATGGCTACAGGCATGTGACACTGAGATTCATTTTCAAACCAATCCAGCAAGCTCCTaGGAGATGTGTAGAGCTTTT | + |
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Preference number: 3 (lower is better) Translates to: ASLVPWLQACDTEIHFQTNPASS*EMCRAF Trigger: AAAAGCTCTACACATCTCCAAGGAGCTTGCTGGATT...GGTTTGAAAATGAATCTCAGTGTCACATGCCTGTAGCCATGGAACCAGGGAGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR TCA 72 bp | CAAATTCCCATTGGTGCCATTGGTAGTGTTGGTGGCTaGACCGTTCACAACAATATAGTCGACTTTGCTCTC | + |
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Preference number: 3 (lower is better) Translates to: QIPIGAIGSVGG*TVHNNIVDFAL Trigger: GAGAGCAAAGTCGACTATATTGTTGTGAACGGTTCAGCCACCAACACTACCAATGGCACCAATGGGAATTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114491.2 |
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| 3UTR CCA 72 bp | TCAGAGACCGAACGGTACTGCAGAATCTATGGGCAATaGGGCATCATTTCTTTACATAAAGGTACAGGGAAG | + |
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Preference number: 3 (lower is better) Translates to: SETERYCRIYGQ*GIISLHKGTGK Trigger: CTTCCCTGTACCTTTATGTAAAGAAATGATGCCCCATTGCCCATAGATTCTGCAGTACCGTTCGGTCTCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR-3UTR CAA 90 bp | CTGGTTCCATGGCTACAGGCATGTGACACTGAGATTCATTTTCAAACCAACAGCGTCTTTCTGGTGCTTTaGTTTCTCGATCTCTGTACA | + |
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Preference number: 3 (lower is better) Translates to: LVPWLQACDTEIHFQTNSVFLVL*FLDLCT Trigger: TGTACAGAGATCGAGAAACAAAAGCACCAGAAAGAC...GCTGTTGGTTTGAAAATGAATCTCAGTGTCACATGCCTGTAGCCATGGAACCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR-3UTR CAA 90 bp | CCTGCTTACCATATCAACCTTGTTAACCAAATTCCTGTTAAGAATACAGAACAGAATCCAGCAAGCTCCTaGGAGATGTGTAGAGCTTTT | + |
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Preference number: 3 (lower is better) Translates to: PAYHINLVNQIPVKNTEQNPASS*EMCRAF Trigger: AAAAGCTCTACACATCTCCAAGGAGCTTGCTGGATT...CTGTTCTGTATTCTTAACAGGAATTTGGTTAACAAGGTTGATATGGTAAGCAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR TCA 72 bp | AATGCCTGCGATTATATATACAGAATTAACATCCTATaGATCCAGCAAGCTCCTTGGAGATGTGTAGAGCTT | + |
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Preference number: 3 (lower is better) Translates to: NACDYIYRINIL*IQQAPWRCVEL Trigger: AAGCTCTACACATCTCCAAGGAGCTTGCTGGATTCATAGGATGTTAATTCTGTATATATAATCGCAGGCATT 39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR CAA 72 bp | ATAGGGTCTGCTCTGCTGCCCAGGCTAGCATTGAGCTaGCAGCTCTCCTGTCCCAGCCTCCCTGGTTCCATG | + |
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Preference number: 4 (lower is better) Translates to: IGSALLPRLALS*QLSCPSLPGSM Trigger: CATGGAACCAGGGAGGCTGGGACAGGAGAGCTGCAAGCTCAATGCTAGCCTGGGCAGCAGAGCAGACCCTAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR CAA 72 bp | TTTTACATAGGGTCTGCTCTGCTGCCCAGGCTAGCATaGAGCTTGCAGCTCTCCTGTCCCAGCCTCCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: FYIGSALLPRLA*SLQLSCPSLPG Trigger: ACCAGGGAGGCTGGGACAGGAGAGCTGCAAGCTCAATGCTAGCCTGGGCAGCAGAGCAGACCCTATGTAAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| 3UTR CAA 72 bp | TGCTATCTGACGCTGCCCGAAACACTCGTCCTTTTGTaGGTCGTTACCGGCACCAAATTCCCATTGGTGCCA | + |
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Preference number: 4 (lower is better) Translates to: CYLTLPETLVLL*VVTGTKFPLVP Trigger: TGGCACCAATGGGAATTTGGTGCCGGTAACGACCAACAAAAGGACGAGTGTTTCGGGCAGCGTCAGATAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114491.2 |
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| 3UTR CAA 72 bp | CACTGCTATCTGACGCTGCCCGAAACACTCGTCCTTTaGTTGGTCGTTACCGGCACCAAATTCCCATTGGTG | + |
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Preference number: 4 (lower is better) Translates to: HCYLTLPETLVL*LVVTGTKFPLV Trigger: CACCAATGGGAATTTGGTGCCGGTAACGACCAACAAAAGGACGAGTGTTTCGGGCAGCGTCAGATAGCAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114491.2 |
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| 3UTR CAA 72 bp | GTCCTTTTGTTGGTCGTTACCGGCACCAAATTCCCATaGGTGCCATTGGTAGTGTTGGTGGCTGAACCGTTC | + |
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Preference number: 4 (lower is better) Translates to: VLLLVVTGTKFP*VPLVVLVAEPF Trigger: GAACGGTTCAGCCACCAACACTACCAATGGCACCAATGGGAATTTGGTGCCGGTAACGACCAACAAAAGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114491.2 |
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| CDS-3UTR GCA 90 bp | TTTATTTCATCCCTGAAAGCAATGAAATCAGAGATGCTCAGGACTCCTCAGAGACAGATCAGCATAGCCTaGCATGGACGCGCCGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: FISSLKAMKSEMLRTPQRQISIA*HGRAAV Trigger: GACAGCGGCGCGTCCATGGCAGGCTATGCTGATCTG...TCTCTGAGGAGTCCTGAGCATCTCTGATTTCATTGCTTTCAGGGATGAAATAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055559.8 |
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| CDS-3UTR CCA 90 bp | GCCTCCCTGGTTCCATGGCTACAGGCATGTGACACTGAGATTCATTTTCAAACCCACTCGTCCTTTTGTTaGTCGTTACCGGCACCAAAT | + |
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Preference number: 4 (lower is better) Translates to: ASLVPWLQACDTEIHFQTHSSFC*SLPAPN Trigger: ATTTGGTGCCGGTAACGACCAACAAAAGGACGAGTG...GGTTTGAAAATGAATCTCAGTGTCACATGCCTGTAGCCATGGAACCAGGGAGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055559.8 |
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| 3UTR CAA 72 bp | TTGGTCGTTACCGGCACCAAATTCCCATTGGTGCCATaGGTAGTGTTGGTGGCTGAACCGTTCACAACAATA | + |
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Preference number: 4 (lower is better) Translates to: LVVTGTKFPLVP*VVLVAEPFTTI Trigger: TATTGTTGTGAACGGTTCAGCCACCAACACTACCAATGGCACCAATGGGAATTTGGTGCCGGTAACGACCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114491.2 |
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| CDS-3UTR CCA 90 bp | TTAAATTGTCCCCTGACGGTTAGCTATGGACAGTGGCTGCTACCCATTTCAAAAAGGAAGCTCAGCTTCTaGGACATATTTTTCCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: LNCPLTVSYGQWLLPISKRKLSF*DIFFLE Trigger: CTCAAGGAAAAATATGTCCCAGAAGCTGAGCTTCCT...TTTTGAAATGGGTAGCAGCCACTGTCCATAGCTAACCGTCAGGGGACAATTTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| CDS-3UTR GCA 90 bp | TTTATTATATACATCTATCTGGCTAAAGTCCTCAAGCCCTTTCCTTCTTCCACCAGCTTCACCAAGCGCTaGAAAATGTCATCTAAGAGG | + |
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Preference number: 4 (lower is better) Translates to: FIIYIYLAKVLKPFPSSTSFTKR*KMSSKR Trigger: CCTCTTAGATGACATTTTGCAGCGCTTGGTGAAGCT...GGTGGAAGAAGGAAAGGGCTTGAGGACTTTAGCCAGATAGATGTATATAATAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055559.8 |
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| CDS-3UTR GCA 90 bp | CTCCCTGCTTACCATATCAACCTTGTTAACCAAATTCCTGTTAAGAATACAGAACAATATAGTCGACTTTaGTCTCCAGCTTCACCAAGC | + |
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Preference number: 4 (lower is better) Translates to: LPAYHINLVNQIPVKNTEQYSRL*SPASPS Trigger: GCTTGGTGAAGCTGGAGAGCAAAGTCGACTATATTG...TTCTGTATTCTTAACAGGAATTTGGTTAACAAGGTTGATATGGTAAGCAGGGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055559.8 |
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| 3UTR CAA 72 bp | TGTACAGAGATGACCTCCCTGCTTACCATATCAACCTaGTTAACCAAATTCCTGTTAAGAATACAGAACAGC | + |
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Preference number: 4 (lower is better) Translates to: CTEMTSLLTIST*LTKFLLRIQNS Trigger: GCTGTTCTGTATTCTTAACAGGAATTTGGTTAACAAGGTTGATATGGTAAGCAGGGAGGTCATCTCTGTACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| CDS-3UTR CCA 90 bp | GTGACACTGAGATTCATTTTCAAACCAACAGCCATGATTGTGAAAAATCATGCAAGGAAGCTCAGCTTCTaGGACATATTTTTCCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: VTLRFIFKPTAMIVKNHARKLSF*DIFFLE Trigger: CTCAAGGAAAAATATGTCCCAGAAGCTGAGCTTCCT...TGCATGATTTTTCACAATCATGGCTGTTGGTTTGAAAATGAATCTCAGTGTCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| CDS CCA 90 bp | GGTATAAGGAGGCTGGACCAGGCAGGTGGAGAACATAGCCTGCCATaGACGCGCCGCTGTCCACATCCGCCGTGCTCCTGCTCTCCTCCG | + |
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Preference number: 5 (lower is better) Translates to: GIRRLDQAGGEHSLP*TRRCPHPPCSCSPP Trigger: CGGAGGAGAGCAGGAGCACGGCGGATGTGGACAGCGGCGCGTCCATGGCAGGCTATGTTCTCCACCTGCCTGGTCCAGCCTCCTTATACC 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114491.2 |
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| CDS CCA 90 bp | CTAAGAGGACTGCAATCGTTCTCTTCAGATCAGCATAGCCTGCCATaGACGCGCCGCTGTCCACATCCGCCGTGCTCCTGCTCTCCTCCG | + |
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Preference number: 5 (lower is better) Translates to: LRGLQSFSSDQHSLP*TRRCPHPPCSCSPP Trigger: CGGAGGAGAGCAGGAGCACGGCGGATGTGGACAGCGGCGCGTCCATGGCAGGCTATGCTGATCTGAAGAGAACGATTGCAGTCCTCTTAG 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055559.8 |
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| CDS GCA 90 bp | GATCAGCATAGCCTGCCATGGACGCGCCGCTGTCCACATCCGCCGTaGTCCTGCTCTCCTCCGCCAGAGCTTTCACGTATCTTTTGCTTA | + |
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Preference number: 5 (lower is better) Translates to: DQHSLPWTRRCPHPP*SCSPPPELSRIFCL Trigger: TAAGCAAAAGATACGTGAAAGCTCTGGCGGAGGAGAGCAGGAGCACGGCGGATGTGGACAGCGGCGCGTCCATGGCAGGCTATGCTGATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055559.8 |
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| CDS GCA 90 bp | GGAGAACATAGCCTGCCATGGACGCGCCGCTGTCCACATCCGCCGTaGTCCTGCTCTCCTCCGCCAGAGCTTTCACGTATCTTTTGCTTA | + |
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Preference number: 5 (lower is better) Translates to: GEHSLPWTRRCPHPP*SCSPPPELSRIFCL Trigger: TAAGCAAAAGATACGTGAAAGCTCTGGCGGAGGAGAGCAGGAGCACGGCGGATGTGGACAGCGGCGCGTCCATGGCAGGCTATGTTCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114491.2 |
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| CDS TCA 90 bp | GCCGCGGCTGTTGCAAAGTGTAGTGAAGTAGCATCAGCCCCCAGATaGGTCCGAACACCAACAACAGGAAGCTCAGCTTCTGGGACATAT | + |
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Preference number: 5 (lower is better) Translates to: AAAVAKCSEVASAPR*VRTPTTGSSASGTY Trigger: ATATGTCCCAGAAGCTGAGCTTCCTGTTGTTGGTGTTCGGACTCATCTGGGGGCTGATGCTACTTCACTACACTTTGCAACAGCCGCGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| CDS-3UTR CAA 90 bp | GTTACCGGCACCAAATTCCCATTGGTGCCATTGGTAGTGTTGGTGGCTGAACCGTCCTGGGACGCTGAGTaGCTGAGTAGGTATAAGGAG | + |
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Preference number: 5 (lower is better) Translates to: VTGTKFPLVPLVVLVAEPSWDAE*LSRYKE Trigger: CTCCTTATACCTACTCAGCAACTCAGCGTCCCAGGA...CGGTTCAGCCACCAACACTACCAATGGCACCAATGGGAATTTGGTGCCGGTAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114491.2 |
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| CDS-3UTR CAA 90 bp | GTGACACTGAGATTCATTTTCAAACCAACAGCCATGATTGTGAAAAATCATGCAGGCACCAAATTCCCATaGGTGCCATTGGTAGTGTTG | + |
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Preference number: 5 (lower is better) Translates to: VTLRFIFKPTAMIVKNHAGTKFP*VPLVVL Trigger: CAACACTACCAATGGCACCAATGGGAATTTGGTGCC...TGCATGATTTTTCACAATCATGGCTGTTGGTTTGAAAATGAATCTCAGTGTCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055559.8 |
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| CDS-3UTR CAA 90 bp | ACATTTATTATATACATCTATCTGGCTAAAGTCCTCAAGCCCTTTCCTTCTTCCGCTTTCACGTATCTTTaGCTTAAATCTAGGATTTGC | + |
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Preference number: 5 (lower is better) Translates to: TFIIYIYLAKVLKPFPSSAFTYL*LKSRIC Trigger: GCAAATCCTAGATTTAAGCAAAAGATACGTGAAAGC...GGAAGAAGGAAAGGGCTTGAGGACTTTAGCCAGATAGATGTATATAATAAATGT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| CDS-3UTR CAA 90 bp | GTGACACTGAGATTCATTTTCAAACCAACAGCCATGATTGTGAAAAATCATGCAGCTTTCACGTATCTTTaGCTTAAATCTAGGATTTGC | + |
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Preference number: 5 (lower is better) Translates to: VTLRFIFKPTAMIVKNHAAFTYL*LKSRIC Trigger: GCAAATCCTAGATTTAAGCAAAAGATACGTGAAAGC...TGCATGATTTTTCACAATCATGGCTGTTGGTTTGAAAATGAATCTCAGTGTCAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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| CDS CCA 72 bp | AGGCTGGACCAGGCAGGTGGAGAACATAGCCTGCCATaGACGCGCCGCTGTCCACATCCGCCGTGCTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: RLDQAGGEHSLP*TRRCPHPPCSC Trigger: GCAGGAGCACGGCGGATGTGGACAGCGGCGCGTCCATGGCAGGCTATGTTCTCCACCTGCCTGGTCCAGCCT 67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114491.2 |
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| CDS CCA 72 bp | CTGCAATCGTTCTCTTCAGATCAGCATAGCCTGCCATaGACGCGCCGCTGTCCACATCCGCCGTGCTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: LQSFSSDQHSLP*TRRCPHPPCSC Trigger: GCAGGAGCACGGCGGATGTGGACAGCGGCGCGTCCATGGCAGGCTATGCTGATCTGAAGAGAACGATTGCAG 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055559.8 |
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| CDS CAA 72 bp | TATCTTTTGCTTAAATCTAGGATTTGCTCACGAAGCTaGACGCTGCTCTGCCGCCGCGGCTGTTGCAAAGTG | + |
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Preference number: 6 (lower is better) Translates to: YLLLKSRICSRS*TLLCRRGCCKV Trigger: CACTTTGCAACAGCCGCGGCGGCAGAGCAGCGTCAAGCTTCGTGAGCAAATCCTAGATTTAAGCAAAAGATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055559.8 ENSMUST00000114491.2 |
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