RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AURKC (Mus musculus)

Ensembl gene IDs: ENSMUSG00000070837

Ensembl transcript IDs: ENSMUST00000086248.7, ENSMUST00000086248.8, ENSMUST00000207660.2, ENSMUST00000207660.3, ENSMUST00000207711.2, ENSMUST00000208049.2, ENSMUST00000208518.2

Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 72 bp ACATCACTTCATAAAAGAGAAAACAAGCGAACCACATaGACTAACAAACAGAGCCTGGAGACCTTCCTGAAG +
Preference number: 3 (lower is better)
Translates to: TSLHKRENKRTT*TNKQSLETFLK
Trigger: CTTCAGGAAGGTCTCCAGGCTCTGTTTGTTAGTGCATGTGGTTCGCTTGTTTTCTCTTTTATGAAGTGATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000086248.7
ENSMUST00000207660.2
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR GCA 90 bp GGAGACCTTCCTGAAGAAATACATAGGGATAGAGATGGACAGGGCTCAGGAAGATCCCTGACCCAGGGGTaGTTCAGGACCTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: GDLPEEIHRDRDGQGSGRSLTQG*FRTWAR
Trigger: CCTGGCCCAGGTCCTGAAGCACCCCTGGGTCAGGGA...TCTTCCTGAGCCCTGTCCATCTCTATCCCTATGTATTTCTTCAGGAAGGTCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR GCA 90 bp GGAGACCTTCCTGAAGAAATACATAGGGATAGAGATGGACAGGGCTCAGGAAGAGCCCAAATTTCCCCCTaGCCAGAGGACGCCCGATTT +
Preference number: 4 (lower is better)
Translates to: GDLPEEIHRDRDGQGSGRAQISP*PEDARF
Trigger: AAATCGGGCGTCCTCTGGGCAGGGGGAAATTTGGGC...TCTTCCTGAGCCCTGTCCATCTCTATCCCTATGTATTTCTTCAGGAAGGTCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR TCA 90 bp CCTGGAGACCTTCCTGAAGAAATACATAGGGATAGAGATGGACAGGGCTCAGGAAGGGCCACGATGAAATaGTTTTCCTTGAGCCGAGCC +
Preference number: 4 (lower is better)
Translates to: PGDLPEEIHRDRDGQGSGRATMK*FSLSRA
Trigger: GGCTCGGCTCAAGGAAAATCATTTCATCGTGGCCCT...TCCTGAGCCCTGTCCATCTCTATCCCTATGTATTTCTTCAGGAAGGTCTCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR GCA 90 bp CCTGGAGACCTTCCTGAAGAAATACATAGGGATAGAGATGGACAGGGCTCAGGAATGTCTCACTGGAGGTaGTGCTCTCAAAGGGTGGCT +
Preference number: 4 (lower is better)
Translates to: PGDLPEEIHRDRDGQGSGMSHWR*CSQRVA
Trigger: AGCCACCCTTTGAGAGCAGCACCTCCAGTGAGACAT...TCCTGAGCCCTGTCCATCTCTATCCCTATGTATTTCTTCAGGAAGGTCTCCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR TCA 90 bp CCTGGAGACCTTCCTGAAGAAATACATAGGGATAGAGATGGACAGGGCTCAGGAACATTGTCTTTCTCCTaGGAGAGGGGGTATGCACAG +
Preference number: 4 (lower is better)
Translates to: PGDLPEEIHRDRDGQGSGTLSFS*ERGYAQ
Trigger: CTGTGCATACCCCCTCTCTCAGGAGAAAGACAATGT...TCCTGAGCCCTGTCCATCTCTATCCCTATGTATTTCTTCAGGAAGGTCTCCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR GCA 90 bp GAGACCTTCCTGAAGAAATACATAGGGATAGAGATGGACAGGGCTCAGGAAGACCTGAGAGAGGGGGTATaGACAGACCACCCAAAGTCT +
Preference number: 4 (lower is better)
Translates to: ETFLKKYIGIEMDRAQEDLREGV*TDHPKS
Trigger: AGACTTTGGGTGGTCTGTGCATACCCCCTCTCTCAG...GTCTTCCTGAGCCCTGTCCATCTCTATCCCTATGTATTTCTTCAGGAAGGTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR GCA 90 bp ACATCACTTCATAAAAGAGAAAACAAGCGAACCACATGCACTAACAAACAGAGCTCCCTGACCCAGGGGTaGTTCAGGACCTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: TSLHKRENKRTTCTNKQSSLTQG*FRTWAR
Trigger: CCTGGCCCAGGTCCTGAAGCACCCCTGGGTCAGGGA...GCTCTGTTTGTTAGTGCATGTGGTTCGCTTGTTTTCTCTTTTATGAAGTGATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR GCA 90 bp ATAAAAGAGAAAACAAGCGAACCACATGCACTAACAAACAGAGCCTGGAGACCTGCCCAAATTTCCCCCTaGCCAGAGGACGCCCGATTT +
Preference number: 4 (lower is better)
Translates to: IKEKTSEPHALTNRAWRPAQISP*PEDARF
Trigger: AAATCGGGCGTCCTCTGGGCAGGGGGAAATTTGGGC...AGGTCTCCAGGCTCTGTTTGTTAGTGCATGTGGTTCGCTTGTTTTCTCTTTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR TCA 90 bp AAAAGAGAAAACAAGCGAACCACATGCACTAACAAACAGAGCCTGGAGACCTTCTCTTCACCTCACCATTaGGGCCCAGCAGGAGATTCT +
Preference number: 4 (lower is better)
Translates to: KRENKRTTCTNKQSLETFSSPHH*GPAGDS
Trigger: AGAATCTCCTGCTGGGCCTCAATGGTGAGGTGAAGA...GAAGGTCTCCAGGCTCTGTTTGTTAGTGCATGTGGTTCGCTTGTTTTCTCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR GCA 90 bp AAAAGAGAAAACAAGCGAACCACATGCACTAACAAACAGAGCCTGGAGACCTTCATGTCTCACTGGAGGTaGTGCTCTCAAAGGGTGGCT +
Preference number: 4 (lower is better)
Translates to: KRENKRTTCTNKQSLETFMSHWR*CSQRVA
Trigger: AGCCACCCTTTGAGAGCAGCACCTCCAGTGAGACAT...GAAGGTCTCCAGGCTCTGTTTGTTAGTGCATGTGGTTCGCTTGTTTTCTCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR TCA 90 bp ATAAAAGAGAAAACAAGCGAACCACATGCACTAACAAACAGAGCCTGGAGACCTAGGGCCACGATGAAATaGTTTTCCTTGAGCCGAGCC +
Preference number: 4 (lower is better)
Translates to: IKEKTSEPHALTNRAWRPRATMK*FSLSRA
Trigger: GGCTCGGCTCAAGGAAAATCATTTCATCGTGGCCCT...AGGTCTCCAGGCTCTGTTTGTTAGTGCATGTGGTTCGCTTGTTTTCTCTTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR GCA 90 bp ATAAAAGAGAAAACAAGCGAACCACATGCACTAACAAACAGAGCCTGGAGACCTCTGAGAGAGGGGGTATaGACAGACCACCCAAAGTCT +
Preference number: 4 (lower is better)
Translates to: IKEKTSEPHALTNRAWRPLREGV*TDHPKS
Trigger: AGACTTTGGGTGGTCTGTGCATACCCCCTCTCTCAG...AGGTCTCCAGGCTCTGTTTGTTAGTGCATGTGGTTCGCTTGTTTTCTCTTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR TCA 90 bp TCACTTCATAAAAGAGAAAACAAGCGAACCACATGCACTAACAAACAGAGCCTGTCTTCACCTCACCATTaGGGCCCAGCAGGAGATTCT +
Preference number: 4 (lower is better)
Translates to: SLHKRENKRTTCTNKQSLSSPHH*GPAGDS
Trigger: AGAATCTCCTGCTGGGCCTCAATGGTGAGGTGAAGA...CAGGCTCTGTTTGTTAGTGCATGTGGTTCGCTTGTTTTCTCTTTTATGAAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR GCA 90 bp ATAAAAGAGAAAACAAGCGAACCACATGCACTAACAAACAGAGCCTGGAGACCTAGCAGAGCACCCCAATaGACCACAGATCAACCATCT +
Preference number: 4 (lower is better)
Translates to: IKEKTSEPHALTNRAWRPSRAPQ*TTDQPS
Trigger: AGATGGTTGATCTGTGGTGCATTGGGGTGCTCTGCT...AGGTCTCCAGGCTCTGTTTGTTAGTGCATGTGGTTCGCTTGTTTTCTCTTTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR TCA 90 bp CATCACTTCATAAAAGAGAAAACAAGCGAACCACATGCACTAACAAACAGAGCCGGCTTGATGTCCCTGTaGATCACCTTCTTCTCATGG +
Preference number: 4 (lower is better)
Translates to: HHFIKEKTSEPHALTNRAGLMSL*ITFFSW
Trigger: CCATGAGAAGAAGGTGATTCACAGGGACATCAAGCC...GGCTCTGTTTGTTAGTGCATGTGGTTCGCTTGTTTTCTCTTTTATGAAGTGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR TCA 90 bp ATAAAAGAGAAAACAAGCGAACCACATGCACTAACAAACAGAGCCTGGAGACCTAGACCACCCAAAGTCTaGGATCTTCACCTCACCATT +
Preference number: 4 (lower is better)
Translates to: IKEKTSEPHALTNRAWRPRPPKV*DLHLTI
Trigger: AATGGTGAGGTGAAGATCTCAGACTTTGGGTGGTCT...AGGTCTCCAGGCTCTGTTTGTTAGTGCATGTGGTTCGCTTGTTTTCTCTTTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR TCA 90 bp CATCACTTCATAAAAGAGAAAACAAGCGAACCACATGCACTAACAAACAGAGCCACATTGTCTTTCTCCTaGGAGAGGGGGTATGCACAG +
Preference number: 4 (lower is better)
Translates to: HHFIKEKTSEPHALTNRATLSFS*ERGYAQ
Trigger: CTGTGCATACCCCCTCTCTCAGGAGAAAGACAATGT...GGCTCTGTTTGTTAGTGCATGTGGTTCGCTTGTTTTCTCTTTTATGAAGTGATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR TCA 90 bp CATCACTTCATAAAAGAGAAAACAAGCGAACCACATGCACTAACAAACAGAGCCGTAGGTCAGGGCATCTaGCAACTCCTGTATTATCGT +
Preference number: 4 (lower is better)
Translates to: HHFIKEKTSEPHALTNRAVGQGI*QLLYYR
Trigger: ACGATAATACAGGAGTTGTCAGATGCCCTGACCTAC...GGCTCTGTTTGTTAGTGCATGTGGTTCGCTTGTTTTCTCTTTTATGAAGTGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR TCA 90 bp TCACTTCATAAAAGAGAAAACAAGCGAACCACATGCACTAACAAACAGAGCCTGAGACCACCCAAAGTCTaGGATCTTCACCTCACCATT +
Preference number: 4 (lower is better)
Translates to: SLHKRENKRTTCTNKQSLRPPKV*DLHLTI
Trigger: AATGGTGAGGTGAAGATCTCAGACTTTGGGTGGTCT...CAGGCTCTGTTTGTTAGTGCATGTGGTTCGCTTGTTTTCTCTTTTATGAAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR TCA 90 bp ACATCACTTCATAAAAGAGAAAACAAGCGAACCACATGCACTAACAAACAGAGCGTAGGTCAGGGCATCTaGCAACTCCTGTATTATCGT +
Preference number: 4 (lower is better)
Translates to: TSLHKRENKRTTCTNKQSVGQGI*QLLYYR
Trigger: ACGATAATACAGGAGTTGTCAGATGCCCTGACCTAC...GCTCTGTTTGTTAGTGCATGTGGTTCGCTTGTTTTCTCTTTTATGAAGTGATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS CCA 90 bp TCCTGGGCTCCTGCAGGTACTGATGAAGGAAACTTAAAATCCACCTaGCGGATGCGTCTGTATGTCTCACTGGAGGTGCTGCTCTCAAAG +
Preference number: 5 (lower is better)
Translates to: SWAPAGTDEGNLKST*RMRLYVSLEVLLSK
Trigger: CTTTGAGAGCAGCACCTCCAGTGAGACATACAGACGCATCCGCCAGGTGGATTTTAAGTTTCCTTCATCAGTACCTGCAGGAGCCCAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000086248.8
ENSMUST00000207660.3
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS CCA 90 bp TCTCATGGCAGTAGGTCAGGGCATCTGACAACTCCTGTATTATCGTaGCTGTACGCTGCTGGTCCAACTTCTGATGTCTCTGAAGCTCCT +
Preference number: 5 (lower is better)
Translates to: SHGSRSGHLTTPVLS*LYAAGPTSDVSEAP
Trigger: AGGAGCTTCAGAGACATCAGAAGTTGGACCAGCAGCGTACAGCCACGATAATACAGGAGTTGTCAGATGCCCTGACCTACTGCCATGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000086248.8
ENSMUST00000207711.2
ENSMUST00000208049.2
ENSMUST00000208518.2
CDS-3UTR CAA 90 bp GGAGACCTTCCTGAAGAAATACATAGGGATAGAGATGGACAGGGCTCAGGAAGACACTTCCCTGCGAAGTaGGTGCTCCAATCCCTCCTT +
Preference number: 5 (lower is better)
Translates to: GDLPEEIHRDRDGQGSGRHFPAK*VLQSLL
Trigger: AAGGAGGGATTGGAGCACCAACTTCGCAGGGAAGTG...TCTTCCTGAGCCCTGTCCATCTCTATCCCTATGTATTTCTTCAGGAAGGTCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR CAA 90 bp TTCATAAAAGAGAAAACAAGCGAACCACATGCACTAACAAACAGAGCCTGGAGACACTTCCCTGCGAAGTaGGTGCTCCAATCCCTCCTT +
Preference number: 5 (lower is better)
Translates to: FIKEKTSEPHALTNRAWRHFPAK*VLQSLL
Trigger: AAGGAGGGATTGGAGCACCAACTTCGCAGGGAAGTG...TCTCCAGGCTCTGTTTGTTAGTGCATGTGGTTCGCTTGTTTTCTCTTTTATGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR CAA 90 bp ATAAAAGAGAAAACAAGCGAACCACATGCACTAACAAACAGAGCCTGGAGACCTATCTTCACCTCACCATaGAGGCCCAGCAGGAGATTC +
Preference number: 5 (lower is better)
Translates to: IKEKTSEPHALTNRAWRPIFTSP*RPSRRF
Trigger: GAATCTCCTGCTGGGCCTCAATGGTGAGGTGAAGAT...AGGTCTCCAGGCTCTGTTTGTTAGTGCATGTGGTTCGCTTGTTTTCTCTTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR CAA 90 bp CATCACTTCATAAAAGAGAAAACAAGCGAACCACATGCACTAACAAACAGAGCCATCTTCACCTCACCATaGAGGCCCAGCAGGAGATTC +
Preference number: 5 (lower is better)
Translates to: HHFIKEKTSEPHALTNRAIFTSP*RPSRRF
Trigger: GAATCTCCTGCTGGGCCTCAATGGTGAGGTGAAGAT...GGCTCTGTTTGTTAGTGCATGTGGTTCGCTTGTTTTCTCTTTTATGAAGTGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS-3UTR CAA 90 bp ACATCACTTCATAAAAGAGAAAACAAGCGAACCACATGCACTAACAAACAGAGCTGGTACCTAAGAAGCTaGGAGATCAAGTCCTGGGCT +
Preference number: 5 (lower is better)
Translates to: TSLHKRENKRTTCTNKQSWYLRS*EIKSWA
Trigger: AGCCCAGGACTTGATCTCCAAGCTTCTTAGGTACCA...GCTCTGTTTGTTAGTGCATGTGGTTCGCTTGTTTTCTCTTTTATGAAGTGATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207711.2
ENSMUST00000208049.2
CDS CCA 72 bp AGTAGGTCAGGGCATCTGACAACTCCTGTATTATCGTaGCTGTACGCTGCTGGTCCAACTTCTGATGTCTCT +
Preference number: 6 (lower is better)
Translates to: SRSGHLTTPVLS*LYAAGPTSDVS
Trigger: AGAGACATCAGAAGTTGGACCAGCAGCGTACAGCCACGATAATACAGGAGTTGTCAGATGCCCTGACCTACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000086248.8
ENSMUST00000207711.2
ENSMUST00000208049.2
ENSMUST00000208518.2
CDS CCA 72 bp GAAGGATGGTACCTAAGAAGCTTGGAGATCAAGTCCTaGGCTCCTGCAGGTACTGATGAAGGAAACTTAAAA +
Preference number: 6 (lower is better)
Translates to: EGWYLRSLEIKS*APAGTDEGNLK
Trigger: TTTTAAGTTTCCTTCATCAGTACCTGCAGGAGCCCAGGACTTGATCTCCAAGCTTCTTAGGTACCATCCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000086248.8
ENSMUST00000207660.3
ENSMUST00000207711.2
ENSMUST00000208049.2