Pregenerated sensors for ATP1B3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032412Ensembl transcript IDs: ENSMUST00000034983.7
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | TTGGCAATTACACACAAAGAAGACAGGGCCCCCACTCTGCATGTTTaGGGTCGGGAGCTCACTGGTCCCTGTCTGGCGACCGTACATGGG | + |
Preference number: 1 (lower is better) Translates to: LAITHKEDRAPTLHV*GRELTGPCLATVHG Trigger: CCCATGTACGGTCGCCAGACAGGGACCAGTGAGCTCCCGACCCCAAACATGCAGAGTGGGGGCCCTGTCTTCTTTGTGTGTAATTGCCAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034983.7 |
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3UTR CAA 90 bp | TTTGGCAATTACACACAAAGAAGACAGGGCCCCCACTCTGCATGTTaGGGGTCGGGAGCTCACTGGTCCCTGTCTGGCGACCGTACATGG | + |
Preference number: 2 (lower is better) Translates to: FGNYTQRRQGPHSAC*GSGAHWSLSGDRTW Trigger: CCATGTACGGTCGCCAGACAGGGACCAGTGAGCTCCCGACCCCAAACATGCAGAGTGGGGGCCCTGTCTTCTTTGTGTGTAATTGCCAAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034983.7 |
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3UTR-3UTR TCA 90 bp | AAGAAACAGTCTGGAGCATACGGACAGGCACCACTCACACATGCGCAGAAGCAGTCTGGAAGCATGTTATaGTGTCACCCAAGTGTGTAC | + |
Preference number: 2 (lower is better) Translates to: KKQSGAYGQAPLTHAQKQSGSML*CHPSVY Trigger: GTACACACTTGGGTGACATCATAACATGCTTCCAGA...CTGCTTCTGCGCATGTGTGAGTGGTGCCTGTCCGTATGCTCCAGACTGTTTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034983.7 |
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3UTR-3UTR CCA 90 bp | ACAGGCACCACTCACACATGCGCAGAAGCAGAGTCTACTTTCAGATCCACTTTAAAAGTCACTCGATGTTaGCAAGGTACCATTGTATCC | + |
Preference number: 2 (lower is better) Translates to: TGTTHTCAEAESTFRSTLKVTRC*QGTIVS Trigger: GGATACAATGGTACCTTGCCAACATCGAGTGACTTT...TAAAGTGGATCTGAAAGTAGACTCTGCTTCTGCGCATGTGTGAGTGGTGCCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034983.7 |
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3UTR CCA 72 bp | ACACACAAAGAAGACAGGGCCCCCACTCTGCATGTTTaGGGTCGGGAGCTCACTGGTCCCTGTCTGGCGACC | + |
Preference number: 3 (lower is better) Translates to: THKEDRAPTLHV*GRELTGPCLAT Trigger: GGTCGCCAGACAGGGACCAGTGAGCTCCCGACCCCAAACATGCAGAGTGGGGGCCCTGTCTTCTTTGTGTGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034983.7 |
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3UTR GCA 72 bp | ACAGTCTGGAGCATACGGACAGGCACCACTCACACATaGGCAGAAGCAGAGTCTACTTTCAGATCCACTTTA | + |
Preference number: 3 (lower is better) Translates to: TVWSIRTGTTHT*AEAESTFRSTL Trigger: TAAAGTGGATCTGAAAGTAGACTCTGCTTCTGCGCATGTGTGAGTGGTGCCTGTCCGTATGCTCCAGACTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034983.7 |
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3UTR CCA 72 bp | ACAACAGAAAGTTTGTCCTCTCAGCAAAATCAGATATaGTCTAGTTCACCTTGTAAGAAACAGTCTGGAGCA | + |
Preference number: 3 (lower is better) Translates to: TTESLSSQQNQI*SSSPCKKQSGA Trigger: TGCTCCAGACTGTTTCTTACAAGGTGAACTAGACCATATCTGATTTTGCTGAGAGGACAAACTTTCTGTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034983.7 |
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3UTR CAA 72 bp | TACACACAAAGAAGACAGGGCCCCCACTCTGCATGTTaGGGGTCGGGAGCTCACTGGTCCCTGTCTGGCGAC | + |
Preference number: 4 (lower is better) Translates to: YTQRRQGPHSAC*GSGAHWSLSGD Trigger: GTCGCCAGACAGGGACCAGTGAGCTCCCGACCCCAAACATGCAGAGTGGGGGCCCTGTCTTCTTTGTGTGTA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034983.7 |
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CDS-3UTR CCA 90 bp | CAGATATGGTCTAGTTCACCTTGTAAGAAACAGTCTGGAGCATACGGACAGGCATCGGCCAGGCTCTGGTaGAAGGATTTCTTCTCAGTC | + |
Preference number: 4 (lower is better) Translates to: QIWSSSPCKKQSGAYGQASARLW*KDFFSV Trigger: GACTGAGAAGAAATCCTTCCACCAGAGCCTGGCCGA...TGCCTGTCCGTATGCTCCAGACTGTTTCTTACAAGGTGAACTAGACCATATCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034983.7 |
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CDS-3UTR GCA 90 bp | TACGGACAGGCACCACTCACACATGCGCAGAAGCAGAGTCTACTTTCAGATCCAATAAGTTGCTATAGTTaGGTTTTCTTCCTTTGGCAA | + |
Preference number: 4 (lower is better) Translates to: YGQAPLTHAQKQSLLSDPISCYS*VFFLWQ Trigger: TTGCCAAAGGAAGAAAACGCAACTATAGCAACTTAT...TGGATCTGAAAGTAGACTCTGCTTCTGCGCATGTGTGAGTGGTGCCTGTCCGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034983.7 |
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3UTR CAA 72 bp | TCATCCCTGTGTCTAAGATACCCGAATGTGGAAGACTaGATTCCAACACTCAAAGTCAGCCCAATAGTATTT | + |
Preference number: 4 (lower is better) Translates to: SSLCLRYPNVED*IPTLKVSPIVF Trigger: AAATACTATTGGGCTGACTTTGAGTGTTGGAATCAAGTCTTCCACATTCGGGTATCTTAGACACAGGGATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034983.7 |
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CDS GCA 90 bp | AGTCACACCACTACATTCTTCAAGCAAGGAGACTGGAAACTGACATaGCCTATAGTCAGGACCATGCTGAATAAAAGGCGCTCCATCAGG | + |
Preference number: 5 (lower is better) Translates to: SHTTTFFKQGDWKLT*PIVRTMLNKRRSIR Trigger: CCTGATGGAGCGCCTTTTATTCAGCATGGTCCTGACTATAGGGCATGTCAGTTTCCAGTCTCCTTGCTTGAAGAATGTAGTGGTGTGACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034983.7 |
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CDS-3UTR CAA 90 bp | CAGATATGGTCTAGTTCACCTTGTAAGAAACAGTCTGGAGCATACGGACAGGCAACACGTCCCAAGAACTaGTCACGCTCATTCTTGTTT | + |
Preference number: 5 (lower is better) Translates to: QIWSSSPCKKQSGAYGQATRPKN*SRSFLF Trigger: AAACAAGAATGAGCGTGACAAGTTCTTGGGACGTGT...TGCCTGTCCGTATGCTCCAGACTGTTTCTTACAAGGTGAACTAGACCATATCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034983.7 |
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CDS-3UTR CAA 90 bp | AGGCACCACTCACACATGCGCAGAAGCAGAGTCTACTTTCAGATCCACTTTATTTTGCGTTTTCTTCCTTaGGCAAACACGATATTTGTG | + |
Preference number: 5 (lower is better) Translates to: RHHSHMRRSRVYFQIHFILRFLP*ANTIFV Trigger: CACAAATATCGTGTTTGCCAAAGGAAGAAAACGCAA...AATAAAGTGGATCTGAAAGTAGACTCTGCTTCTGCGCATGTGTGAGTGGTGCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034983.7 |
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CDS CCA 90 bp | AAAATTAGCATCAGTCACACCACTACATTCTTCAAGCAAGGAGACTaGAAACTGACATGCCCTATAGTCAGGACCATGCTGAATAAAAGG | + |
Preference number: 5 (lower is better) Translates to: KISISHTTTFFKQGD*KLTCPIVRTMLNKR Trigger: CCTTTTATTCAGCATGGTCCTGACTATAGGGCATGTCAGTTTCCAGTCTCCTTGCTTGAAGAATGTAGTGGTGTGACTGATGCTAATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034983.7 |
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CDS CCA 72 bp | ATCAGTCACACCACTACATTCTTCAAGCAAGGAGACTaGAAACTGACATGCCCTATAGTCAGGACCATGCTG | + |
Preference number: 6 (lower is better) Translates to: ISHTTTFFKQGD*KLTCPIVRTML Trigger: CAGCATGGTCCTGACTATAGGGCATGTCAGTTTCCAGTCTCCTTGCTTGAAGAATGTAGTGGTGTGACTGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034983.7 |
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CDS CCA 72 bp | TGGTCTCGATATTTCGGAACTTCATCATTCAGAGTCTaGAGCATGGCCCACATTGTGAATGTGAAGAGTGCA | + |
Preference number: 6 (lower is better) Translates to: WSRYFGTSSFRV*SMAHIVNVKSA Trigger: TGCACTCTTCACATTCACAATGTGGGCCATGCTCCAGACTCTGAATGATGAAGTTCCGAAATATCGAGACCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034983.7 |
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CDS TCA 72 bp | CAACCAACTTTTTGTAAGTCTGTGGCTCAGACATGCTaGATGTATATTCCAAGGCAGTCTGCGGTTTGGGAA | + |
Preference number: 6 (lower is better) Translates to: QPTFCKSVAQTC*MYIPRQSAVWE Trigger: TTCCCAAACCGCAGACTGCCTTGGAATATACATTCAGCATGTCTGAGCCACAGACTTACAAAAAGTTGGTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034983.7 |