RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ARL8B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030105

Ensembl transcript IDs: ENSMUST00000032196.9, ENSMUST00000204483.2

Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAAGGAGCCAGAGCTCTCTCACTCAGCGCGGCTAGGTGGCCACATTaGTGGCCCCCTCTCTACCCTGCCAGAATCCAGTCCTGGGATTAC +
Preference number: 1 (lower is better)
Translates to: EGARALSLSAARWPH*WPPLYPARIQSWDY
Trigger: GTAATCCCAGGACTGGATTCTGGCAGGGTAGAGAGGGGGCCATCAATGTGGCCACCTAGCCGCGCTGAGTGAGAGAGCTCTGGCTCCTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR CCA 90 bp TCAACACCTCGGCCAGCTGAGGCAGCCACCTTCCAGCACAGTCTGTaGAGCCCTTTCCAGAGTGATTATCTTCCCACTCGAGTCCAAAGG +
Preference number: 1 (lower is better)
Translates to: STPRPAEAATFQHSL*SPFQSDYLPTRVQR
Trigger: CCTTTGGACTCGAGTGGGAAGATAATCACTCTGGAAAGGGCTCCACAGACTGTGCTGGAAGGTGGCTGCCTCAGCTGGCCGAGGTGTTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR GCA 90 bp AGTCCTGGGATTACAGACAAAGCACACTGTGGGCCTAACATCTACTaGCGGGGACCCCAACTTCAGGTTAGGAGGCAAGTGCTTTATCCA +
Preference number: 1 (lower is better)
Translates to: SPGITDKAHCGPNIY*RGPQLQVRRQVLYP
Trigger: TGGATAAAGCACTTGCCTCCTAACCTGAAGTTGGGGTCCCCGGCAGTAGATGTTAGGCCCACAGTGTGCTTTGTCTGTAATCCCAGGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR CCA 90 bp AAGTCAGGAATTAAGGGTGGCATGCAGCAGCACAGGGTGGGTGCCTaGAGACAAAGAACAGACGTGGATTCAGATGAAGTCGGACATTCT +
Preference number: 1 (lower is better)
Translates to: KSGIKGGMQQHRVGA*RQRTDVDSDEVGHS
Trigger: AGAATGTCCGACTTCATCTGAATCCACGTCTGTTCTTTGTCTCCAGGCACCCACCCTGTGCTGCTGCATGCCACCCTTAATTCCTGACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR GCA 90 bp TCTGGACCTCGTTTAGGCTTCCACCCTCCAGGCCTTCTGAGAGGATaGAGTTACCAAATCAATGTCAGATGCAAAAGGAAGTCACTCTCC +
Preference number: 1 (lower is better)
Translates to: SGPRLGFHPPGLLRG*SYQINVRCKRKSLS
Trigger: GGAGAGTGACTTCCTTTTGCATCTGACATTGATTTGGTAACTGCATCCTCTCAGAAGGCCTGGAGGGTGGAAGCCTAAACGAGGTCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR TCA 90 bp GGCTTATGTTGGGTATCTTCCGCAGTCATTTTCTACCTTAACTCCTaGAGCAGTGTATGCTCAGAAGGAGCCAGAGCTCTCTCACTCAGC +
Preference number: 1 (lower is better)
Translates to: GLCWVSSAVIFYLNS*SSVCSEGARALSLS
Trigger: GCTGAGTGAGAGAGCTCTGGCTCCTTCTGAGCATACACTGCTTCAGGAGTTAAGGTAGAAAATGACTGCGGAAGATACCCAACATAAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR CCA 90 bp GCATGCAGCAGCACAGGGTGGGTGCCTGGAGACAAAGAACAGACGTaGATTCAGATGAAGTCGGACATTCTTAAAGGGTTTTATTACATT +
Preference number: 1 (lower is better)
Translates to: ACSSTGWVPGDKEQT*IQMKSDILKGFYYI
Trigger: AATGTAATAAAACCCTTTAAGAATGTCCGACTTCATCTGAATCCACGTCTGTTCTTTGTCTCCAGGCACCCACCCTGTGCTGCTGCATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR TCA 90 bp GCACAGGGTGGGTGCCTGGAGACAAAGAACAGACGTGGATTCAGATaGAGTCGGACATTCTTAAAGGGTTTTATTACATTAGCTAGAATG +
Preference number: 1 (lower is better)
Translates to: AQGGCLETKNRRGFR*SRTFLKGFITLARM
Trigger: CATTCTAGCTAATGTAATAAAACCCTTTAAGAATGTCCGACTTCATCTGAATCCACGTCTGTTCTTTGTCTCCAGGCACCCACCCTGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR TCA 90 bp TTAGAAGAGCAACTTAAGAGGAAGTCTGTAATGCTCCCGATTGCATaGCTAGTTTTCTCCTTAAGTCTCCTGACTCACAAGTGTGCACTG +
Preference number: 1 (lower is better)
Translates to: LEEQLKRKSVMLPIA*LVFSLSLLTHKCAL
Trigger: CAGTGCACACTTGTGAGTCAGGAGACTTAAGGAGAAAACTAGTCATGCAATCGGGAGCATTACAGACTTCCTCTTAAGTTGCTCTTCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR-3UTR CCA 90 bp GGGTGGCATGCAGCAGCACAGGGTGGGTGCCTGGAGACAAAGAACAGACGTGGACATGCATGTGTGAGATaGGATAAACAGTATGTCCGT +
Preference number: 2 (lower is better)
Translates to: GWHAAAQGGCLETKNRRGHACVR*DKQYVR
Trigger: ACGGACATACTGTTTATCCCATCTCACACATGCATG...TCCACGTCTGTTCTTTGTCTCCAGGCACCCACCCTGTGCTGCTGCATGCCACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR-3UTR GCA 90 bp GGCCAGCTGAGGCAGCCACCTTCCAGCACAGTCTGTGGAGCCCTTTCCAGAGTGTTAGATGTCCTGAAATaGTGGAAAGCAATGGAAAGA +
Preference number: 2 (lower is better)
Translates to: GQLRQPPSSTVCGALSRVLDVLK*WKAMER
Trigger: TCTTTCCATTGCTTTCCAGCATTTCAGGACATCTAA...CACTCTGGAAAGGGCTCCACAGACTGTGCTGGAAGGTGGCTGCCTCAGCTGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR-3UTR CCA 90 bp AAGCACACTGTGGGCCTAACATCTACTGCCGGGGACCCCAACTTCAGGTTAGGAGACAAAGAACAGACGTaGATTCAGATGAAGTCGGAC +
Preference number: 2 (lower is better)
Translates to: KHTVGLTSTAGDPNFRLGDKEQT*IQMKSD
Trigger: GTCCGACTTCATCTGAATCCACGTCTGTTCTTTGTC...TCCTAACCTGAAGTTGGGGTCCCCGGCAGTAGATGTTAGGCCCACAGTGTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR-3UTR CCA 90 bp TCTTCATGTGTTTGGCGAACATGCCTGTGTATGTACATGCCCATGCGTGTGAGTCACAGGGTGGGTGCCTaGAGACAAAGAACAGACGTG +
Preference number: 2 (lower is better)
Translates to: SSCVWRTCLCMYMPMRVSHRVGA*RQRTDV
Trigger: CACGTCTGTTCTTTGTCTCCAGGCACCCACCCTGTG...ACTCACACGCATGGGCATGTACATACACAGGCATGTTCGCCAAACACATGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR-3UTR GCA 90 bp TGCCAAATCACACACTCAGTGACACAGAGTGACAGTATGTACGACAGCCTAACTTCGGTGACATTAGAGTaGCTGGCCAGCATTGGTGAA +
Preference number: 2 (lower is better)
Translates to: CQITHSVTQSDSMYDSLTSVTLE*LASIGE
Trigger: TTCACCAATGCTGGCCAGGCACTCTAATGTCACCGA...AGTTAGGCTGTCGTACATACTGTCACTCTGTGTCACTGAGTGTGTGATTTGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR-3UTR TCA 90 bp TCTTCATGTGTTTGGCGAACATGCCTGTGTATGTACATGCCCATGCGTGTGAGTTTCTACCTTAACTCCTaGAGCAGTGTATGCTCAGAA +
Preference number: 2 (lower is better)
Translates to: SSCVWRTCLCMYMPMRVSFYLNS*SSVCSE
Trigger: TTCTGAGCATACACTGCTTCAGGAGTTAAGGTAGAA...ACTCACACGCATGGGCATGTACATACACAGGCATGTTCGCCAAACACATGAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR-3UTR CCA 90 bp AATAAGAAGAGAACTTTCCAGCCCAGGTCCTACTCAGTAAGAATGAGAATGGAGCCTCCGTTCTCTGTGTaGCCGATCATCAAACAACCT +
Preference number: 2 (lower is better)
Translates to: NKKRTFQPRSYSVRMRMEPPFSV*PIIKQP
Trigger: AGGTTGTTTGATGATCGGCCACACAGAGAACGGAGG...CTCCATTCTCATTCTTACTGAGTAGGACCTGGGCTGGAAAGTTCTCTTCTTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR-3UTR CCA 90 bp TCTTCATGTGTTTGGCGAACATGCCTGTGTATGTACATGCCCATGCGTGTGAGTGATGTCCTGAAATGCTaGAAAGCAATGGAAAGACAC +
Preference number: 2 (lower is better)
Translates to: SSCVWRTCLCMYMPMRVSDVLKC*KAMERH
Trigger: GTGTCTTTCCATTGCTTTCCAGCATTTCAGGACATC...ACTCACACGCATGGGCATGTACATACACAGGCATGTTCGCCAAACACATGAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR-3UTR TCA 90 bp TGCCAAATCACACACTCAGTGACACAGAGTGACAGTATGTACGACAGCCTAACTCCAGCTGATTTGCTATaGAGGATAGGAATACACATC +
Preference number: 2 (lower is better)
Translates to: CQITHSVTQSDSMYDSLTPADLL*RIGIHI
Trigger: GATGTGTATTCCTATCCTTCATAGCAAATCAGCTGG...AGTTAGGCTGTCGTACATACTGTCACTCTGTGTCACTGAGTGTGTGATTTGGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR-3UTR CCA 90 bp AGTTTAAATATCCCTTTATTCAAACCACCCATCCAATTCAGGAAGAGTGCAACCAGTGCCTGTGCAACATaGTGCAGTTATCTGTCCAGA +
Preference number: 2 (lower is better)
Translates to: SLNIPLFKPPIQFRKSATSACAT*CSYLSR
Trigger: TCTGGACAGATAACTGCACCATGTTGCACAGGCACT...GGTTGCACTCTTCCTGAATTGGATGGGTGGTTTGAATAAAGGGATATTTAAACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR-3UTR TCA 90 bp AGTTTAAATATCCCTTTATTCAAACCACCCATCCAATTCAGGAAGAGTGCAACCTTTCACATGCATGTGTaGGATGGGATAAACAGTATG +
Preference number: 2 (lower is better)
Translates to: SLNIPLFKPPIQFRKSATFHMHV*DGINSM
Trigger: CATACTGTTTATCCCATCTCACACATGCATGTGAAA...GGTTGCACTCTTCCTGAATTGGATGGGTGGTTTGAATAAAGGGATATTTAAACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR-3UTR CCA 90 bp AGTTTAAATATCCCTTTATTCAAACCACCCATCCAATTCAGGAAGAGTGCAACCGTCCCTTTATGTACGTaGAGATCACTAAGCTACAAA +
Preference number: 2 (lower is better)
Translates to: SLNIPLFKPPIQFRKSATVPLCT*RSLSYK
Trigger: TTTGTAGCTTAGTGATCTCCACGTACATAAAGGGAC...GGTTGCACTCTTCCTGAATTGGATGGGTGGTTTGAATAAAGGGATATTTAAACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR TCA 72 bp GGCGAACATGCCTGTGTATGTACATGCCCATGCGTGTaGGTATGGAGGCGTACACACTCGGAGCTCCGGGGC +
Preference number: 3 (lower is better)
Translates to: GEHACVCTCPCV*VWRRTHSELRG
Trigger: GCCCCGGAGCTCCGAGTGTGTACGCCTCCATACTCACACGCATGGGCATGTACATACACAGGCATGTTCGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR CCA 72 bp CGGCCAGCTGAGGCAGCCACCTTCCAGCACAGTCTGTaGAGCCCTTTCCAGAGTGATTATCTTCCCACTCGA +
Preference number: 3 (lower is better)
Translates to: RPAEAATFQHSL*SPFQSDYLPTR
Trigger: TCGAGTGGGAAGATAATCACTCTGGAAAGGGCTCCACAGACTGTGCTGGAAGGTGGCTGCCTCAGCTGGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR TCA 72 bp GTGTTCGGTGACATTAGAGTGCCTGGCCAGCATTGGTaGAGACTAGACTCACTCCTCAGGACCGGCCCACCA +
Preference number: 3 (lower is better)
Translates to: VFGDIRVPGQHW*RLDSLLRTGPP
Trigger: TGGTGGGCCGGTCCTGAGGAGTGAGTCTAGTCTTCACCAATGCTGGCCAGGCACTCTAATGTCACCGAACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR TCA 72 bp TTATTTCTAGTTCATCCCATCAACACCTCGGCCAGCTaGGGCAGCCACCTTCCAGCACAGTCTGTGGAGCCC +
Preference number: 3 (lower is better)
Translates to: LFLVHPINTSAS*GSHLPAQSVEP
Trigger: GGGCTCCACAGACTGTGCTGGAAGGTGGCTGCCTCAGCTGGCCGAGGTGTTGATGGGATGAACTAGAAATAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR TCA 72 bp CACCTTCCAGCACAGTCTGTGGAGCCCTTTCCAGAGTaGTTATCTTCCCACTCGAGTCCAAAGGTCTGCGTC +
Preference number: 3 (lower is better)
Translates to: HLPAQSVEPFPE*LSSHSSPKVCV
Trigger: GACGCAGACCTTTGGACTCGAGTGGGAAGATAATCACTCTGGAAAGGGCTCCACAGACTGTGCTGGAAGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR GCA 72 bp ATTACAGACAAAGCACACTGTGGGCCTAACATCTACTaGCGGGGACCCCAACTTCAGGTTAGGAGGCAAGTG +
Preference number: 3 (lower is better)
Translates to: ITDKAHCGPNIY*RGPQLQVRRQV
Trigger: CACTTGCCTCCTAACCTGAAGTTGGGGTCCCCGGCAGTAGATGTTAGGCCCACAGTGTGCTTTGTCTGTAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR CCA 72 bp TGGAGGCGTACACACTCGGAGCTCCGGGGCTTATGTTaGGTATCTTCCGCAGTCATTTTCTACCTTAACTCC +
Preference number: 3 (lower is better)
Translates to: WRRTHSELRGLC*VSSAVIFYLNS
Trigger: GGAGTTAAGGTAGAAAATGACTGCGGAAGATACCCAACATAAGCCCCGGAGCTCCGAGTGTGTACGCCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR TCA 72 bp ACCCATCCAATTCAGGAAGAGTGCAACCTGCCTCCGTaGATAAGAAGAGAACTTTCCAGCCCAGGTCCTACT +
Preference number: 3 (lower is better)
Translates to: THPIQEECNLPP*IRRELSSPGPT
Trigger: AGTAGGACCTGGGCTGGAAAGTTCTCTTCTTATTCACGGAGGCAGGTTGCACTCTTCCTGAATTGGATGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR GCA 72 bp CGTTTAGGCTTCCACCCTCCAGGCCTTCTGAGAGGATaGAGTTACCAAATCAATGTCAGATGCAAAAGGAAG +
Preference number: 3 (lower is better)
Translates to: RLGFHPPGLLRG*SYQINVRCKRK
Trigger: CTTCCTTTTGCATCTGACATTGATTTGGTAACTGCATCCTCTCAGAAGGCCTGGAGGGTGGAAGCCTAAACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR CCA 72 bp AGCACAGGGTGGGTGCCTGGAGACAAAGAACAGACGTaGATTCAGATGAAGTCGGACATTCTTAAAGGGTTT +
Preference number: 3 (lower is better)
Translates to: STGWVPGDKEQT*IQMKSDILKGF
Trigger: AAACCCTTTAAGAATGTCCGACTTCATCTGAATCCACGTCTGTTCTTTGTCTCCAGGCACCCACCCTGTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR TCA 72 bp ATCATAGTCAAAAAGGCAAATTTTAGAGATCTGTTCTaGGCCACACACCCATCCTCCCAGCACTCACGAGGC +
Preference number: 3 (lower is better)
Translates to: IIVKKANFRDLF*ATHPSSQHSRG
Trigger: GCCTCGTGAGTGCTGGGAGGATGGGTGTGTGGCTCAGAACAGATCTCTAAAATTTGCCTTTTTGACTATGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR GCA 72 bp AGAATGGAGAGAACAAGTAGTGCCTGTGCAACATGGTaGAGTTATCTGTCCAGAATGTTCTTAAGGCCGTGG +
Preference number: 3 (lower is better)
Translates to: RMERTSSACATW*SYLSRMFLRPW
Trigger: CCACGGCCTTAAGAACATTCTGGACAGATAACTGCACCATGTTGCACAGGCACTACTTGTTCTCTCCATTCT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR TCA 72 bp CCTTATTACCATCAATTTGACAATAGTAAATTCTTGTaGAAGGTATGCCAAATCACACACTCAGTGACACAG +
Preference number: 3 (lower is better)
Translates to: PYYHQFDNSKFL*KVCQITHSVTQ
Trigger: CTGTGTCACTGAGTGTGTGATTTGGCATACCTTTCACAAGAATTTACTATTGTCAAATTGATGGTAATAAGG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
CDS-3UTR TCA 90 bp GGGTGGCATGCAGCAGCACAGGGTGGGTGCCTGGAGACAAAGAACAGACGTGGAGCTTCTCCGGGATTTTaGGTGTTGAATAAGCCACTG +
Preference number: 4 (lower is better)
Translates to: GWHAAAQGGCLETKNRRGASPGF*VLNKPL
Trigger: CAGTGGCTTATTCAACACTCAAAATCCCGGAGAAGC...TCCACGTCTGTTCTTTGTCTCCAGGCACCCACCCTGTGCTGCTGCATGCCACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
3UTR CAA 72 bp GGTCGGTCTCCTCACAGTGGCACGTTTTCAGAGTCCTaGGCCAGCAGGGTGTTACAGATTGGTATCTTCTGG +
Preference number: 4 (lower is better)
Translates to: GRSPHSGTFSES*ASRVLQIGIFW
Trigger: CCAGAAGATACCAATCTGTAACACCCTGCTGGCCAAGGACTCTGAAAACGTGCCACTGTGAGGAGACCGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
CDS-3UTR GCA 90 bp GGCCAGCTGAGGCAGCCACCTTCCAGCACAGTCTGTGGAGCCCTTTCCAGAGTGTATCATGTAAACAATTaGATTGACTCCTCGGCAGTA +
Preference number: 4 (lower is better)
Translates to: GQLRQPPSSTVCGALSRVYHVNN*IDSSAV
Trigger: TACTGCCGAGGAGTCAATGCAATTGTTTACATGATA...CACTCTGGAAAGGGCTCCACAGACTGTGCTGGAAGGTGGCTGCCTCAGCTGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
CDS-3UTR TCA 90 bp AACGACAGGAGTTCTAAGGTTAGAGCCAAGGGGACTGGAAGACGAAGAAGAGGTGCTTCTCCGGGATTTTaGGTGTTGAATAAGCCACTG +
Preference number: 4 (lower is better)
Translates to: NDRSSKVRAKGTGRRRRGASPGF*VLNKPL
Trigger: CAGTGGCTTATTCAACACTCAAAATCCCGGAGAAGC...ACCTCTTCTTCGTCTTCCAGTCCCCTTGGCTCTAACCTTAGAACTCCTGTCGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032196.9
ENSMUST00000204483.2
CDS-3UTR TCA 90 bp GCAAGTGCTTTATCCACTAAGCCATCTCCTCAGCCCCAAAACGGCATATCAGAGATATCTTCACTGAATTaGCCGGACGCGATGACATTG +
Preference number: 4 (lower is better)
Translates to: ASALSTKPSPQPQNGISEISSLN*PDAMTL
Trigger: CAATGTCATCGCGTCCGGTCAATTCAGTGAAGATAT...CTCTGATATGCCGTTTTGGGGCTGAGGAGATGGCTTAGTGGATAAAGCACTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
CDS-3UTR GCA 90 bp GGAACGACAGGAGTTCTAAGGTTAGAGCCAAGGGGACTGGAAGACGAAGAAGAGTATCATGTAAACAATTaGATTGACTCCTCGGCAGTA +
Preference number: 4 (lower is better)
Translates to: GTTGVLRLEPRGLEDEEEYHVNN*IDSSAV
Trigger: TACTGCCGAGGAGTCAATGCAATTGTTTACATGATA...CTCTTCTTCGTCTTCCAGTCCCCTTGGCTCTAACCTTAGAACTCCTGTCGTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032196.9
ENSMUST00000204483.2
CDS-3UTR GCA 90 bp CAGAGGAACGACAGGAGTTCTAAGGTTAGAGCCAAGGGGACTGGAAGACGAAGATATCTTTTCTCGATCTaGAGCATCTATCATGTAAAC +
Preference number: 4 (lower is better)
Translates to: QRNDRSSKVRAKGTGRRRYLFSI*SIYHVN
Trigger: GTTTACATGATAGATGCTGCAGATCGAGAAAAGATA...TCTTCGTCTTCCAGTCCCCTTGGCTCTAACCTTAGAACTCCTGTCGTTCCTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032196.9
ENSMUST00000204483.2
CDS-3UTR GCA 90 bp AACGACAGGAGTTCTAAGGTTAGAGCCAAGGGGACTGGAAGACGAAGAAGAGGTTATCTTTTCTCGATCTaGAGCATCTATCATGTAAAC +
Preference number: 4 (lower is better)
Translates to: NDRSSKVRAKGTGRRRRGYLFSI*SIYHVN
Trigger: GTTTACATGATAGATGCTGCAGATCGAGAAAAGATA...ACCTCTTCTTCGTCTTCCAGTCCCCTTGGCTCTAACCTTAGAACTCCTGTCGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032196.9
ENSMUST00000204483.2
CDS-3UTR GCA 90 bp CCGTTCTCTGTGTGGCCGATCATCAAACAACCTGTAGACATTGCGCATGATTACTTATCTAGAAGATTATaGAGTTCATTTCGAGAGGCT +
Preference number: 4 (lower is better)
Translates to: PFSVWPIIKQPVDIAHDYLSRRL*SSFREA
Trigger: AGCCTCTCGAAATGAACTGCATAATCTTCTAGATAA...GTAATCATGCGCAATGTCTACAGGTTGTTTGATGATCGGCCACACAGAGAACGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
CDS-3UTR CAA 90 bp TTCCAGCCCAGGTCCTACTCAGTAAGAATGAGAATGGAGAGAACAAGTAGTGCCCATATCTTCACTGAATaGACCGGACGCGATGACATT +
Preference number: 5 (lower is better)
Translates to: FQPRSYSVRMRMERTSSAHIFTE*TGRDDI
Trigger: AATGTCATCGCGTCCGGTCAATTCAGTGAAGATATG...GGCACTACTTGTTCTCTCCATTCTCATTCTTACTGAGTAGGACCTGGGCTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
CDS-3UTR CAA 90 bp TCCAGCACAGTCTGTGGAGCCCTTTCCAGAGTGATTATCTTCCCACTCGAGTCCTTTGGAAGATCTCTCTaGTTTCCAAGTACTAGTACT +
Preference number: 5 (lower is better)
Translates to: SSTVCGALSRVIIFPLESFGRSL*FPSTST
Trigger: AGTACTAGTACTTGGAAACAAGAGAGATCTTCCAAA...GGACTCGAGTGGGAAGATAATCACTCTGGAAAGGGCTCCACAGACTGTGCTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032196.9
CDS-3UTR CAA 90 bp GGAACGACAGGAGTTCTAAGGTTAGAGCCAAGGGGACTGGAAGACGAAGAAGAGTTTGGAAGATCTCTCTaGTTTCCAAGTACTAGTACT +
Preference number: 5 (lower is better)
Translates to: GTTGVLRLEPRGLEDEEEFGRSL*FPSTST
Trigger: AGTACTAGTACTTGGAAACAAGAGAGATCTTCCAAA...CTCTTCTTCGTCTTCCAGTCCCCTTGGCTCTAACCTTAGAACTCCTGTCGTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032196.9
ENSMUST00000204483.2