RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ANXA10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031635

Ensembl transcript IDs: ENSMUST00000034052.14, ENSMUST00000034054.9

Found 86 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGTTATTACACACTGAGGGTGAACACATATGGACGGTGGTCACACTaGCAGTGGTCACACACAGAGGGTGATCAGGCACTAATGGTGACC +
Preference number: 1 (lower is better)
Translates to: SYYTLRVNTYGRWSH*QWSHTEGDQALMVT
Trigger: GGTCACCATTAGTGCCTGATCACCCTCTGTGTGTGACCACTGTCAGTGTGACCACCGTCCATATGTGTTCACCCTCAGTGTGTAATAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
3UTR TCA 90 bp GTTTGTCCAAGAGTCCAGGCAATTTCTTTGAGGGTGATCATGCACTaGGAGTTATTACACACTGAGGGTGAACACATATGGACGGTGGTC +
Preference number: 1 (lower is better)
Translates to: VCPRVQAISLRVIMH*ELLHTEGEHIWTVV
Trigger: GACCACCGTCCATATGTGTTCACCCTCAGTGTGTAATAACTCTCAGTGCATGATCACCCTCAAAGAAATTGCCTGGACTCTTGGACAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
3UTR GCA 90 bp TTATTTGTGATTATCTATTTTCATTACAAGGCTATTCTAGGCCCTTaGTTCAGCTTTGTTTTGTTTGTCCAAGAGTCCAGGCAATTTCTT +
Preference number: 1 (lower is better)
Translates to: LFVIIYFHYKAILGP*FSFVLFVQESRQFL
Trigger: AAGAAATTGCCTGGACTCTTGGACAAACAAAACAAAGCTGAAGCAAGGGCCTAGAATAGCCTTGTAATGAAAATAGATAATCACAAATAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
3UTR-3UTR TCA 90 bp GAGTTATTACACACTGAGGGTGAACACATATGGACGGTGGTCACACTGACAGTGGGATGGTGGTCACATTaGCAGTGGTCACACACAGAG +
Preference number: 2 (lower is better)
Translates to: ELLHTEGEHIWTVVTLTVGWWSH*QWSHTE
Trigger: CTCTGTGTGTGACCACTGTCAATGTGACCACCATCC...CACTGTCAGTGTGACCACCGTCCATATGTGTTCACCCTCAGTGTGTAATAACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
3UTR TCA 72 bp ACACTGAGGGTGAACACATATGGACGGTGGTCACACTaGCAGTGGTCACACACAGAGGGTGATCAGGCACTA +
Preference number: 3 (lower is better)
Translates to: TLRVNTYGRWSH*QWSHTEGDQAL
Trigger: TAGTGCCTGATCACCCTCTGTGTGTGACCACTGTCAGTGTGACCACCGTCCATATGTGTTCACCCTCAGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
3UTR TCA 72 bp ATGGTGGTCACATTGACAGTGGTCACACACAGAGGGTaGTCAGGCACTAATGGTGACCATAATATGGATGGT +
Preference number: 3 (lower is better)
Translates to: MVVTLTVVTHRG*SGTNGDHNMDG
Trigger: ACCATCCATATTATGGTCACCATTAGTGCCTGATCACCCTCTGTGTGTGACCACTGTCAATGTGACCACCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
3UTR TCA 72 bp AGAGTCCAGGCAATTTCTTTGAGGGTGATCATGCACTaGGAGTTATTACACACTGAGGGTGAACACATATGG +
Preference number: 3 (lower is better)
Translates to: RVQAISLRVIMH*ELLHTEGEHIW
Trigger: CCATATGTGTTCACCCTCAGTGTGTAATAACTCTCAGTGCATGATCACCCTCAAAGAAATTGCCTGGACTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
3UTR-3UTR CAA 90 bp CTATTTTCATTACAAGGCTATTCTAGGCCCTTGCTTCAGCTTTGTTTTGTTTGTTGGATGGTGGTCACATaGACAGTGGTCACACACAGA +
Preference number: 3 (lower is better)
Translates to: LFSLQGYSRPLLQLCFVCWMVVT*TVVTHR
Trigger: TCTGTGTGTGACCACTGTCAATGTGACCACCATCCA...ACAAACAAAACAAAGCTGAAGCAAGGGCCTAGAATAGCCTTGTAATGAAAATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR GCA 90 bp CTAATGGTGACCATAACATGGATGGTGGTCACATTGACAGTGGTCACACACAGATGTTCCCCAGTCTTCTaGTGGCAGGCTTCCCACAGC +
Preference number: 4 (lower is better)
Translates to: LMVTITWMVVTLTVVTHRCSPVF*WQASHS
Trigger: GCTGTGGGAAGCCTGCCAGCAGAAGACTGGGGAACA...TCTGTGTGTGACCACTGTCAATGTGACCACCATCCATGTTATGGTCACCATTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR GCA 90 bp TGCACTGAGAGTTATTACACACTGAGGGTGAACACATATGGACGGTGGTCACACTCTGCCGCTGTGCATTaGTGCGTTGTGTTAGGATGT +
Preference number: 4 (lower is better)
Translates to: CTESYYTLRVNTYGRWSHSAAVH*CVVLGC
Trigger: ACATCCTAACACAACGCAGCAATGCACAGCGGCAGA...GTGTGACCACCGTCCATATGTGTTCACCCTCAGTGTGTAATAACTCTCAGTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR CCA 90 bp CTAATGGTGACCATAACATGGATGGTGGTCACATTGACAGTGGTCACACACAGATTCCTGGTCCCTTCATaGCATGCCAGAGCTCATGAG +
Preference number: 4 (lower is better)
Translates to: LMVTITWMVVTLTVVTHRFLVPS*HARAHE
Trigger: CTCATGAGCTCTGGCATGCCATGAAGGGACCAGGAA...TCTGTGTGTGACCACTGTCAATGTGACCACCATCCATGTTATGGTCACCATTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR TCA 90 bp GACCATAACATGGATGGTGGTCACATTGACAGTGGTCACACACAGAGGGTGATCCATCCATCATGGGATTaGAATTTGGAGCTGGGAAGA +
Preference number: 4 (lower is better)
Translates to: DHNMDGGHIDSGHTQRVIHPSWD*NLELGR
Trigger: TCTTCCCAGCTCCAAATTTCAATCCCATGATGGATG...GATCACCCTCTGTGTGTGACCACTGTCAATGTGACCACCATCCATGTTATGGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR GCA 90 bp GAGTTATTACACACTGAGGGTGAACACATATGGACGGTGGTCACACTGACAGTGGTGGGTAGCTCTTGTTaGACAGGATCATCTGCATCA +
Preference number: 4 (lower is better)
Translates to: ELLHTEGEHIWTVVTLTVVGSSC*TGSSAS
Trigger: TGATGCAGATGATCCTGTGCAACAAGAGCTACCCAC...CACTGTCAGTGTGACCACCGTCCATATGTGTTCACCCTCAGTGTGTAATAACTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR CCA 90 bp TGCACTGAGAGTTATTACACACTGAGGGTGAACACATATGGACGGTGGTCACACATTCTCATCAGTTCCTaGTCCCTTCATGGCATGCCA +
Preference number: 4 (lower is better)
Translates to: CTESYYTLRVNTYGRWSHILISS*SLHGMP
Trigger: TGGCATGCCATGAAGGGACCAGGAACTGATGAGAAT...GTGTGACCACCGTCCATATGTGTTCACCCTCAGTGTGTAATAACTCTCAGTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR CCA 90 bp ATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTCTCCCCAGTCTTCTGCTaGCAGGCTTCCCACAGCACC +
Preference number: 4 (lower is better)
Translates to: IRATNLGLHISNRGDFCLSPVFC*QASHST
Trigger: GGTGCTGTGGGAAGCCTGCCAGCAGAAGACTGGGGA...GAGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR GCA 90 bp CATTACAAGGCTATTCTAGGCCCTTGCTTCAGCTTTGTTTTGTTTGTCCAAGAGTCCTTCCTCCCTGTTTaGCTGGACCAAGTTCATGAG +
Preference number: 4 (lower is better)
Translates to: HYKAILGPCFSFVLFVQESFLPV*LDQVHE
Trigger: CTCATGAACTTGGTCCAGGCAAACAGGGAGGAAGGA...CTCTTGGACAAACAAAACAAAGCTGAAGCAAGGGCCTAGAATAGCCTTGTAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR GCA 90 bp ATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTCTGTTCCCCAGTCTTCTaGTGGCAGGCTTCCCACAGC +
Preference number: 4 (lower is better)
Translates to: IRATNLGLHISNRGDFCLCSPVF*WQASHS
Trigger: GCTGTGGGAAGCCTGCCAGCAGAAGACTGGGGAACA...GAGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR CCA 90 bp GAGTTATTACACACTGAGGGTGAACACATATGGACGGTGGTCACACTGACAGTGATTGAAATTTGGAGCTaGGAAGATGGTTCCTTGGAC +
Preference number: 4 (lower is better)
Translates to: ELLHTEGEHIWTVVTLTVIEIWS*EDGSLD
Trigger: GTCCAAGGAACCATCTTCCCAGCTCCAAATTTCAAT...CACTGTCAGTGTGACCACCGTCCATATGTGTTCACCCTCAGTGTGTAATAACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR CCA 90 bp CTAATGGTGACCATAACATGGATGGTGGTCACATTGACAGTGGTCACACACAGACATGGGATTGAAATTTaGAGCTGGGAAGATGGTTCC +
Preference number: 4 (lower is better)
Translates to: LMVTITWMVVTLTVVTHRHGIEI*SWEDGS
Trigger: GGAACCATCTTCCCAGCTCCAAATTTCAATCCCATG...TCTGTGTGTGACCACTGTCAATGTGACCACCATCCATGTTATGGTCACCATTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR CCA 90 bp TTGAATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCCCCAGTCTTCTGCTaGCAGGCTTCCCACAGCACC +
Preference number: 4 (lower is better)
Translates to: LNKGYKSRITHFQQRRFLSPVFC*QASHST
Trigger: GGTGCTGTGGGAAGCCTGCCAGCAGAAGACTGGGGA...CAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTATTCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR GCA 90 bp GAGTTATTACACACTGAGGGTGAACACATATGGACGGTGGTCACACTGACAGTGCCTCTTGAAGGTTATTaGTGTACTGTAAACAGTAGG +
Preference number: 4 (lower is better)
Translates to: ELLHTEGEHIWTVVTLTVPLEGY*CTVNSR
Trigger: CCTACTGTTTACAGTACAGCAATAACCTTCAAGAGG...CACTGTCAGTGTGACCACCGTCCATATGTGTTCACCCTCAGTGTGTAATAACTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR GCA 90 bp AATGGTGACCATAACATGGATGGTGGTCACATTGACAGTGGTCACACACAGAGGTTGCACAGGATCATCTaGATCATGGTTTTATGTTCC +
Preference number: 4 (lower is better)
Translates to: NGDHNMDGGHIDSGHTQRLHRII*IMVLCS
Trigger: GGAACATAAAACCATGATGCAGATGATCCTGTGCAA...CCTCTGTGTGTGACCACTGTCAATGTGACCACCATCCATGTTATGGTCACCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR GCA 90 bp CTATTTTCATTACAAGGCTATTCTAGGCCCTTGCTTCAGCTTTGTTTTGTTTGTTTCCCACAGCACCATTaGATCCTGAGCAGCCATTGC +
Preference number: 4 (lower is better)
Translates to: LFSLQGYSRPLLQLCFVCFPQHH*ILSSHC
Trigger: GCAATGGCTGCTCAGGATGCAATGGTGCTGTGGGAA...ACAAACAAAACAAAGCTGAAGCAAGGGCCTAGAATAGCCTTGTAATGAAAATAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR GCA 90 bp ATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTCTTCCCACAGCACCATTaGATCCTGAGCAGCCATTGC +
Preference number: 4 (lower is better)
Translates to: IRATNLGLHISNRGDFCLFPQHH*ILSSHC
Trigger: GCAATGGCTGCTCAGGATGCAATGGTGCTGTGGGAA...GAGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR TCA 90 bp ATCTATTTTCATTACAAGGCTATTCTAGGCCCTTGCTTCAGCTTTGTTTTGTTTAGCACCATTGCATCCTaGGCAGCCATTGCAGGATCA +
Preference number: 4 (lower is better)
Translates to: IYFHYKAILGPCFSFVLFSTIAS*AAIAGS
Trigger: TGATCCTGCAATGGCTGCTCAGGATGCAATGGTGCT...AAACAAAACAAAGCTGAAGCAAGGGCCTAGAATAGCCTTGTAATGAAAATAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR TCA 90 bp AATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTAGCACCATTGCATCCTaGGCAGCCATTGCAGGATCA +
Preference number: 4 (lower is better)
Translates to: NKGYKSRITHFQQRRFLSSTIAS*AAIAGS
Trigger: TGATCCTGCAATGGCTGCTCAGGATGCAATGGTGCT...AGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR GCA 90 bp ATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTCTCTGCCGCTGTGCATTaGTGCGTTGTGTTAGGATGT +
Preference number: 4 (lower is better)
Translates to: IRATNLGLHISNRGDFCLSAAVH*CVVLGC
Trigger: ACATCCTAACACAACGCAGCAATGCACAGCGGCAGA...GAGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR CCA 90 bp AATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTTTCCTGGTCCCTTCATaGCATGCCAGAGCTCATGAG +
Preference number: 4 (lower is better)
Translates to: NKGYKSRITHFQQRRFLSFLVPS*HARAHE
Trigger: CTCATGAGCTCTGGCATGCCATGAAGGGACCAGGAA...AGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR GCA 90 bp TATTTTCATTACAAGGCTATTCTAGGCCCTTGCTTCAGCTTTGTTTTGTTTGTCATCCTGAGCAGCCATTaGAGGATCAGAGTATCCTTC +
Preference number: 4 (lower is better)
Translates to: YFHYKAILGPCFSFVLFVILSSH*RIRVSF
Trigger: GAAGGATACTCTGATCCTGCAATGGCTGCTCAGGAT...GACAAACAAAACAAAGCTGAAGCAAGGGCCTAGAATAGCCTTGTAATGAAAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR GCA 90 bp ATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTCGTGGGTAGCTCTTGTTaGACAGGATCATCTGCATCA +
Preference number: 4 (lower is better)
Translates to: IRATNLGLHISNRGDFCLVGSSC*TGSSAS
Trigger: TGATGCAGATGATCCTGTGCAACAAGAGCTACCCAC...GAGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR CCA 90 bp TATTTTCATTACAAGGCTATTCTAGGCCCTTGCTTCAGCTTTGTTTTGTTTGTCAGCATCATAAGATGGTaGAGGATACATCAGGCCCAC +
Preference number: 4 (lower is better)
Translates to: YFHYKAILGPCFSFVLFVSIIRW*RIHQAH
Trigger: GTGGGCCTGATGTATCCTCCACCATCTTATGATGCT...GACAAACAAAACAAAGCTGAAGCAAGGGCCTAGAATAGCCTTGTAATGAAAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR GCA 90 bp TTGAATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGATCCTGAGCAGCCATTaGAGGATCAGAGTATCCTTC +
Preference number: 4 (lower is better)
Translates to: LNKGYKSRITHFQQRRFLILSSH*RIRVSF
Trigger: GAAGGATACTCTGATCCTGCAATGGCTGCTCAGGAT...CAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTATTCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR CCA 90 bp ATTAAAACAGTCCTGTCAGATTTTCTTGTTGTAGGAACTGACAGTTCACATGTATTGGAGCTGGGAAGATaGTTCCTTGGACATATTCCC +
Preference number: 4 (lower is better)
Translates to: IKTVLSDFLVVGTDSSHVLELGR*FLGHIP
Trigger: GGGAATATGTCCAAGGAACCATCTTCCCAGCTCCAA...TACATGTGAACTGTCAGTTCCTACAACAAGAAAATCTGACAGGACTGTTTTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR CCA 90 bp AATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTTTGGAGCTGGGAAGATaGTTCCTTGGACATATTCCC +
Preference number: 4 (lower is better)
Translates to: NKGYKSRITHFQQRRFLSLELGR*FLGHIP
Trigger: GGGAATATGTCCAAGGAACCATCTTCCCAGCTCCAA...AGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR CCA 90 bp AATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTAGCATCATAAGATGGTaGAGGATACATCAGGCCCAC +
Preference number: 4 (lower is better)
Translates to: NKGYKSRITHFQQRRFLSSIIRW*RIHQAH
Trigger: GTGGGCCTGATGTATCCTCCACCATCTTATGATGCT...AGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR CCA 90 bp AATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTATTCTCATCAGTTCCTaGTCCCTTCATGGCATGCCA +
Preference number: 4 (lower is better)
Translates to: NKGYKSRITHFQQRRFLSILISS*SLHGMP
Trigger: TGGCATGCCATGAAGGGACCAGGAACTGATGAGAAT...AGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR CCA 90 bp AATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTTCCTCCCTGTTTGCCTaGACCAAGTTCATGAGAGTA +
Preference number: 4 (lower is better)
Translates to: NKGYKSRITHFQQRRFLSSSLFA*TKFMRV
Trigger: TACTCTCATGAACTTGGTCCAGGCAAACAGGGAGGA...AGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR CCA 90 bp AATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTAACCAGCCAAAGTTGTaGGTAGCTCTTGTTGCACAG +
Preference number: 4 (lower is better)
Translates to: NKGYKSRITHFQQRRFLSNQPKL*VALVAQ
Trigger: CTGTGCAACAAGAGCTACCCACAACTTTGGCTGGTT...AGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR CCA 90 bp CATTACAAGGCTATTCTAGGCCCTTGCTTCAGCTTTGTTTTGTTTGTCCAAGAGATAAGCAAAATAGCTTaGTTTGTCCTGGATACAACG +
Preference number: 4 (lower is better)
Translates to: HYKAILGPCFSFVLFVQEISKIA*FVLDTT
Trigger: CGTTGTATCCAGGACAAACCAAGCTATTTTGCTTAT...CTCTTGGACAAACAAAACAAAGCTGAAGCAAGGGCCTAGAATAGCCTTGTAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR TCA 90 bp TTGAATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGCATCCATCATGGGATTaGAATTTGGAGCTGGGAAGA +
Preference number: 4 (lower is better)
Translates to: LNKGYKSRITHFQQRRFLHPSWD*NLELGR
Trigger: TCTTCCCAGCTCCAAATTTCAATCCCATGATGGATG...CAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTATTCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR GCA 90 bp ATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTCTCAGCATGTCTTTGTTaGAGTCAAATCCTTGGAGTG +
Preference number: 4 (lower is better)
Translates to: IRATNLGLHISNRGDFCLSACLC*SQILGV
Trigger: CACTCCAAGGATTTGACTGCAACAAAGACATGCTGA...GAGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR GCA 90 bp TCCACATTTCAGACTGATATTAAAACAGTCCTGTCAGATTTTCTTGTTGTAGGATCAGCATGTCTTTGTTaGAGTCAAATCCTTGGAGTG +
Preference number: 4 (lower is better)
Translates to: STFQTDIKTVLSDFLVVGSACLC*SQILGV
Trigger: CACTCCAAGGATTTGACTGCAACAAAGACATGCTGA...TCCTACAACAAGAAAATCTGACAGGACTGTTTTAATATCAGTCTGAAATGTGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR CCA 90 bp AATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTATTGAAATTTGGAGCTaGGAAGATGGTTCCTTGGAC +
Preference number: 4 (lower is better)
Translates to: NKGYKSRITHFQQRRFLSIEIWS*EDGSLD
Trigger: GTCCAAGGAACCATCTTCCCAGCTCCAAATTTCAAT...AGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR TCA 90 bp ATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTCTTCTTTGAAGTGAGATaGAAGTTGTTCCTTCAGAAC +
Preference number: 4 (lower is better)
Translates to: IRATNLGLHISNRGDFCLFFEVR*KLFLQN
Trigger: GTTCTGAAGGAACAACTTTCATCTCACTTCAAAGAA...GAGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR TCA 90 bp TATCTATTTTCATTACAAGGCTATTCTAGGCCCTTGCTTCAGCTTTGTTTTGTTCCACCATCACTTCTTTaGAGTGAGATGAAAGTTGTT +
Preference number: 4 (lower is better)
Translates to: YLFSLQGYSRPLLQLCFVPPSLL*SEMKVV
Trigger: AACAACTTTCATCTCACTTCAAAGAAGTGATGGTGG...AACAAAACAAAGCTGAAGCAAGGGCCTAGAATAGCCTTGTAATGAAAATAGATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR TCA 90 bp TTGAATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGCCACCATCACTTCTTTaGAGTGAGATGAAAGTTGTT +
Preference number: 4 (lower is better)
Translates to: LNKGYKSRITHFQQRRFLPPSLL*SEMKVV
Trigger: AACAACTTTCATCTCACTTCAAAGAAGTGATGGTGG...CAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTATTCAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR GCA 90 bp AATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTTTGCACAGGATCATCTaGATCATGGTTTTATGTTCC +
Preference number: 4 (lower is better)
Translates to: NKGYKSRITHFQQRRFLSLHRII*IMVLCS
Trigger: GGAACATAAAACCATGATGCAGATGATCCTGTGCAA...AGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR TCA 90 bp ATCTATTTTCATTACAAGGCTATTCTAGGCCCTTGCTTCAGCTTTGTTTTGTTTTTCTTTGAAGTGAGATaGAAGTTGTTCCTTCAGAAC +
Preference number: 4 (lower is better)
Translates to: IYFHYKAILGPCFSFVLFFFEVR*KLFLQN
Trigger: GTTCTGAAGGAACAACTTTCATCTCACTTCAAAGAA...AAACAAAACAAAGCTGAAGCAAGGGCCTAGAATAGCCTTGTAATGAAAATAGAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR TCA 90 bp ATCTATTTTCATTACAAGGCTATTCTAGGCCCTTGCTTCAGCTTTGTTTTGTTTATCACTTCTTTGAAGTaGGATGAAAGTTGTTCCTTC +
Preference number: 4 (lower is better)
Translates to: IYFHYKAILGPCFSFVLFITSLK*DESCSF
Trigger: GAAGGAACAACTTTCATCTCACTTCAAAGAAGTGAT...AAACAAAACAAAGCTGAAGCAAGGGCCTAGAATAGCCTTGTAATGAAAATAGAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR CCA 90 bp AATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTATAAGCAAAATAGCTTaGTTTGTCCTGGATACAACG +
Preference number: 4 (lower is better)
Translates to: NKGYKSRITHFQQRRFLSISKIA*FVLDTT
Trigger: CGTTGTATCCAGGACAAACCAAGCTATTTTGCTTAT...AGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTATT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR CCA 90 bp CTATTTTCATTACAAGGCTATTCTAGGCCCTTGCTTCAGCTTTGTTTTGTTTGTTGTAACGTTTCCTTATaGTCATTAGGTCTATTTCAC +
Preference number: 4 (lower is better)
Translates to: LFSLQGYSRPLLQLCFVCCNVSL*SLGLFH
Trigger: GTGAAATAGACCTAATGACCATAAGGAAACGTTACA...ACAAACAAAACAAAGCTGAAGCAAGGGCCTAGAATAGCCTTGTAATGAAAATAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR CCA 90 bp AATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTTGGAAGCCAAAATCATaGATTGCCCTGTATAATTTA +
Preference number: 4 (lower is better)
Translates to: NKGYKSRITHFQQRRFLSWKPKS*IALYNL
Trigger: TAAATTATACAGGGCAATCCATGATTTTGGCTTCCA...AGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTATT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR CCA 90 bp AATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTTGTAACGTTTCCTTATaGTCATTAGGTCTATTTCAC +
Preference number: 4 (lower is better)
Translates to: NKGYKSRITHFQQRRFLSCNVSL*SLGLFH
Trigger: GTGAAATAGACCTAATGACCATAAGGAAACGTTACA...AGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTATT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS GCA 90 bp CTGCTGGCAGGCTTCCCACAGCACCATTGCATCCTGAGCAGCCATTaGAGGATCAGAGTATCCTTCCTCCCTGTTTGCCTGGACCAAGTT +
Preference number: 5 (lower is better)
Translates to: LLAGFPQHHCILSSH*RIRVSFLPVCLDQV
Trigger: AACTTGGTCCAGGCAAACAGGGAGGAAGGATACTCTGATCCTGCAATGGCTGCTCAGGATGCAATGGTGCTGTGGGAAGCCTGCCAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS TCA 90 bp ATCCTTGGAGTGCTCCGCCTAGCATTTGGGCATCCATCATGGGATTaGAATTTGGAGCTGGGAAGATGGTTCCTTGGACATATTCCCCGC +
Preference number: 5 (lower is better)
Translates to: ILGVLRLAFGHPSWD*NLELGRWFLGHIPR
Trigger: GCGGGGAATATGTCCAAGGAACCATCTTCCCAGCTCCAAATTTCAATCCCATGATGGATGCCCAAATGCTAGGCGGAGCACTCCAAGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS GCA 90 bp CTGCTGGCAGGCTTCCCACAGCACCATTGCATCCTGAGCAGCCATTaGAGGATCAGAGTATCCTTCCTCCCTGTTTGCATATTTATGTAT +
Preference number: 5 (lower is better)
Translates to: LLAGFPQHHCILSSH*RIRVSFLPVCIFMY
Trigger: ATACATAAATATGCAAACAGGGAGGAAGGATACTCTGATCCTGCAATGGCTGCTCAGGATGCAATGGTGCTGTGGGAAGCCTGCCAGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034054.9
CDS CCA 90 bp TCCTGGTCCCTTCATGGCATGCCAGAGCTCATGAGCATCATAAGATaGTGGAGGATACATCAGGCCCACCATCACTTCTTTGAAGTGAGA +
Preference number: 5 (lower is better)
Translates to: SWSLHGMPELMSIIR*WRIHQAHHHFFEVR
Trigger: TCTCACTTCAAAGAAGTGATGGTGGGCCTGATGTATCCTCCACCATCTTATGATGCTCATGAGCTCTGGCATGCCATGAAGGGACCAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS GCA 90 bp ACATGCTCTGATAGGTCCCAGCTATCATCTGCCGCTGTGCATTGCTaGGTTGTGTTAGGATGTCAATCAGCATGTCTTTGTTGCAGTCAA +
Preference number: 5 (lower is better)
Translates to: TCSDRSQLSSAAVHC*VVLGCQSACLCCSQ
Trigger: TTGACTGCAACAAAGACATGCTGATTGACATCCTAACACAACGCAGCAATGCACAGCGGCAGATGATAGCTGGGACCTATCAGAGCATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS GCA 90 bp CATACATGCTCTGATAGGTCCCAGCTATCATCTGCCGCTGTGCATTaGTGCGTTGTGTTAGGATGTCAATCAGCATGTCTTTGTTGCAGT +
Preference number: 5 (lower is better)
Translates to: HTCSDRSQLSSAAVH*CVVLGCQSACLCCS
Trigger: ACTGCAACAAAGACATGCTGATTGACATCCTAACACAACGCAGCAATGCACAGCGGCAGATGATAGCTGGGACCTATCAGAGCATGTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS CCA 90 bp TGTGTTAGGATGTCAATCAGCATGTCTTTGTTGCAGTCAAATCCTTaGAGTGCTCCGCCTAGCATTTGGGCATCCATCATGGGATTGAAA +
Preference number: 5 (lower is better)
Translates to: CVRMSISMSLLQSNP*SAPPSIWASIMGLK
Trigger: TTTCAATCCCATGATGGATGCCCAAATGCTAGGCGGAGCACTCCAAGGATTTGACTGCAACAAAGACATGCTGATTGACATCCTAACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS TCA 90 bp CATCATAAGATGGTGGAGGATACATCAGGCCCACCATCACTTCTTTaGAGTGAGATGAAAGTTGTTCCTTCAGAACTGAAATCAGGTCCC +
Preference number: 5 (lower is better)
Translates to: HHKMVEDTSGPPSLL*SEMKVVPSELKSGP
Trigger: GGGACCTGATTTCAGTTCTGAAGGAACAACTTTCATCTCACTTCAAAGAAGTGATGGTGGGCCTGATGTATCCTCCACCATCTTATGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR CAA 90 bp TATCTATTTTCATTACAAGGCTATTCTAGGCCCTTGCTTCAGCTTTGTTTTGTTCTTCCCACAGCACCATaGCATCCTGAGCAGCCATTG +
Preference number: 5 (lower is better)
Translates to: YLFSLQGYSRPLLQLCFVLPTAP*HPEQPL
Trigger: CAATGGCTGCTCAGGATGCAATGGTGCTGTGGGAAG...AACAAAACAAAGCTGAAGCAAGGGCCTAGAATAGCCTTGTAATGAAAATAGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR CAA 90 bp AATGGTGACCATAACATGGATGGTGGTCACATTGACAGTGGTCACACACAGAGGATCCTGATGACAGTTTaGTTATGGAAGCCAAAATCA +
Preference number: 5 (lower is better)
Translates to: NGDHNMDGGHIDSGHTQRILMTV*LWKPKS
Trigger: TGATTTTGGCTTCCATAACAAAACTGTCATCAGGAT...CCTCTGTGTGTGACCACTGTCAATGTGACCACCATCCATGTTATGGTCACCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR CAA 90 bp TATTTTCATTACAAGGCTATTCTAGGCCCTTGCTTCAGCTTTGTTTTGTTTGTCGCATCCATCATGGGATaGAAATTTGGAGCTGGGAAG +
Preference number: 5 (lower is better)
Translates to: YFHYKAILGPCFSFVLFVASIMG*KFGAGK
Trigger: CTTCCCAGCTCCAAATTTCAATCCCATGATGGATGC...GACAAACAAAACAAAGCTGAAGCAAGGGCCTAGAATAGCCTTGTAATGAAAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR CAA 90 bp ATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTCGCATCCATCATGGGATaGAAATTTGGAGCTGGGAAG +
Preference number: 5 (lower is better)
Translates to: IRATNLGLHISNRGDFCLASIMG*KFGAGK
Trigger: CTTCCCAGCTCCAAATTTCAATCCCATGATGGATGC...GAGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR CAA 90 bp ATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTCTCAATCAGCATGTCTTaGTTGCAGTCAAATCCTTGG +
Preference number: 5 (lower is better)
Translates to: IRATNLGLHISNRGDFCLSISMS*LQSNPW
Trigger: CCAAGGATTTGACTGCAACAAAGACATGCTGATTGA...GAGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR CAA 90 bp ATCTATTTTCATTACAAGGCTATTCTAGGCCCTTGCTTCAGCTTTGTTTTGTTTGGCATCCACCAGGTCTaGGCCAGAAATATTTTGAAA +
Preference number: 5 (lower is better)
Translates to: IYFHYKAILGPCFSFVLFGIHQV*ARNILK
Trigger: TTTCAAAATATTTCTGGCCAAGACCTGGTGGATGCC...AAACAAAACAAAGCTGAAGCAAGGGCCTAGAATAGCCTTGTAATGAAAATAGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR CAA 90 bp TTGAATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGGGCATCCACCAGGTCTaGGCCAGAAATATTTTGAAA +
Preference number: 5 (lower is better)
Translates to: LNKGYKSRITHFQQRRFLGIHQV*ARNILK
Trigger: TTTCAAAATATTTCTGGCCAAGACCTGGTGGATGCC...CAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTATTCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR CAA 90 bp TATCTATTTTCATTACAAGGCTATTCTAGGCCCTTGCTTCAGCTTTGTTTTGTTTCAATCAGCATGTCTTaGTTGCAGTCAAATCCTTGG +
Preference number: 5 (lower is better)
Translates to: YLFSLQGYSRPLLQLCFVSISMS*LQSNPW
Trigger: CCAAGGATTTGACTGCAACAAAGACATGCTGATTGA...AACAAAACAAAGCTGAAGCAAGGGCCTAGAATAGCCTTGTAATGAAAATAGATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS-3UTR CAA 90 bp ATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTCTATAAGCAAAATAGCTaGGTTTGTCCTGGATACAAC +
Preference number: 5 (lower is better)
Translates to: IRATNLGLHISNRGDFCLYKQNS*VCPGYN
Trigger: GTTGTATCCAGGACAAACCAAGCTATTTTGCTTATA...GAGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS-3UTR CAA 90 bp ATAAGGGCTACAAATCTAGGATTACACATTTCCAACAGAGGAGATTTTTGTCTCATCCTGATGACAGTTTaGTTATGGAAGCCAAAATCA +
Preference number: 5 (lower is better)
Translates to: IRATNLGLHISNRGDFCLILMTV*LWKPKS
Trigger: TGATTTTGGCTTCCATAACAAAACTGTCATCAGGAT...GAGACAAAAATCTCCTCTGTTGGAAATGTGTAATCCTAGATTTGTAGCCCTTAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS GCA 72 bp GGCTTCCCACAGCACCATTGCATCCTGAGCAGCCATTaGAGGATCAGAGTATCCTTCCTCCCTGTTTGCCTG +
Preference number: 6 (lower is better)
Translates to: GFPQHHCILSSH*RIRVSFLPVCL
Trigger: CAGGCAAACAGGGAGGAAGGATACTCTGATCCTGCAATGGCTGCTCAGGATGCAATGGTGCTGTGGGAAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034052.14
CDS GCA 72 bp GGCTTCCCACAGCACCATTGCATCCTGAGCAGCCATTaGAGGATCAGAGTATCCTTCCTCCCTGTTTGCATA +
Preference number: 6 (lower is better)
Translates to: GFPQHHCILSSH*RIRVSFLPVCI
Trigger: TATGCAAACAGGGAGGAAGGATACTCTGATCCTGCAATGGCTGCTCAGGATGCAATGGTGCTGTGGGAAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034054.9
CDS CCA 72 bp TTGCAGTCAAATCCTTGGAGTGCTCCGCCTAGCATTTaGGCATCCATCATGGGATTGAAATTTGGAGCTGGG +
Preference number: 6 (lower is better)
Translates to: LQSNPWSAPPSI*ASIMGLKFGAG
Trigger: CCCAGCTCCAAATTTCAATCCCATGATGGATGCCCAAATGCTAGGCGGAGCACTCCAAGGATTTGACTGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS CCA 72 bp GTGGGTAGCTCTTGTTGCACAGGATCATCTGCATCATaGTTTTATGTTCCCCAGTCTTCTGCTGGCAGGCTT +
Preference number: 6 (lower is better)
Translates to: VGSSCCTGSSAS*FYVPQSSAGRL
Trigger: AAGCCTGCCAGCAGAAGACTGGGGAACATAAAACCATGATGCAGATGATCCTGTGCAACAAGAGCTACCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS CCA 72 bp CATGGCATGCCAGAGCTCATGAGCATCATAAGATGGTaGAGGATACATCAGGCCCACCATCACTTCTTTGAA +
Preference number: 6 (lower is better)
Translates to: HGMPELMSIIRW*RIHQAHHHFFE
Trigger: TTCAAAGAAGTGATGGTGGGCCTGATGTATCCTCCACCATCTTATGATGCTCATGAGCTCTGGCATGCCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS GCA 72 bp CCTGGAAAACCAGCCAAAGTTGTGGGTAGCTCTTGTTaGACAGGATCATCTGCATCATGGTTTTATGTTCCC +
Preference number: 6 (lower is better)
Translates to: PGKPAKVVGSSC*TGSSASWFYVP
Trigger: GGGAACATAAAACCATGATGCAGATGATCCTGTGCAACAAGAGCTACCCACAACTTTGGCTGGTTTTCCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS CCA 72 bp ATGTCAATCAGCATGTCTTTGTTGCAGTCAAATCCTTaGAGTGCTCCGCCTAGCATTTGGGCATCCATCATG +
Preference number: 6 (lower is better)
Translates to: MSISMSLLQSNP*SAPPSIWASIM
Trigger: CATGATGGATGCCCAAATGCTAGGCGGAGCACTCCAAGGATTTGACTGCAACAAAGACATGCTGATTGACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS CCA 72 bp CATTTGGGCATCCATCATGGGATTGAAATTTGGAGCTaGGAAGATGGTTCCTTGGACATATTCCCCGCAAAA +
Preference number: 6 (lower is better)
Translates to: HLGIHHGIEIWS*EDGSLDIFPAK
Trigger: TTTTGCGGGGAATATGTCCAAGGAACCATCTTCCCAGCTCCAAATTTCAATCCCATGATGGATGCCCAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS TCA 72 bp GGAGGATACATCAGGCCCACCATCACTTCTTTGAAGTaGGATGAAAGTTGTTCCTTCAGAACTGAAATCAGG +
Preference number: 6 (lower is better)
Translates to: GGYIRPTITSLK*DESCSFRTEIR
Trigger: CCTGATTTCAGTTCTGAAGGAACAACTTTCATCTCACTTCAAAGAAGTGATGGTGGGCCTGATGTATCCTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS CAA 90 bp GTAACAGTCATTGATGGCATCCACCAGGTCTTGGCCAGAAATATTTaGAAATTCCTGGAAAACCAGCCAAAGTTGTGGGTAGCTCTTGTT +
Preference number: 6 (lower is better)
Translates to: VTVIDGIHQVLARNI*KFLENQPKLWVALV
Trigger: AACAAGAGCTACCCACAACTTTGGCTGGTTTTCCAGGAATTTCAAAATATTTCTGGCCAAGACCTGGTGGATGCCATCAATGACTGTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS TCA 72 bp ATGGTGGAGGATACATCAGGCCCACCATCACTTCTTTaGAGTGAGATGAAAGTTGTTCCTTCAGAACTGAAA +
Preference number: 6 (lower is better)
Translates to: MVEDTSGPPSLL*SEMKVVPSELK
Trigger: TTTCAGTTCTGAAGGAACAACTTTCATCTCACTTCAAAGAAGTGATGGTGGGCCTGATGTATCCTCCACCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS CAA 72 bp ACCATCGTAACAGTCATTGATGGCATCCACCAGGTCTaGGCCAGAAATATTTTGAAATTCCTGGAAAACCAG +
Preference number: 6 (lower is better)
Translates to: TIVTVIDGIHQV*ARNILKFLENQ
Trigger: CTGGTTTTCCAGGAATTTCAAAATATTTCTGGCCAAGACCTGGTGGATGCCATCAATGACTGTTACGATGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS CAA 90 bp CTGGAAATAACCATCGTAACAGTCATTGATGGCATCCACCAGGTCTaGGCCAGAAATATTTTGAAATTCCTGGAAAACCAGCCAAAGTTG +
Preference number: 6 (lower is better)
Translates to: LEITIVTVIDGIHQV*ARNILKFLENQPKL
Trigger: CAACTTTGGCTGGTTTTCCAGGAATTTCAAAATATTTCTGGCCAAGACCTGGTGGATGCCATCAATGACTGTTACGATGGTTATTTCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS CCA 72 bp AATATTTTGAAATTCCTGGAAAACCAGCCAAAGTTGTaGGTAGCTCTTGTTGCACAGGATCATCTGCATCAT +
Preference number: 6 (lower is better)
Translates to: NILKFLENQPKL*VALVAQDHLHH
Trigger: ATGATGCAGATGATCCTGTGCAACAAGAGCTACCCACAACTTTGGCTGGTTTTCCAGGAATTTCAAAATATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9
CDS CCA 72 bp CTTCTGGCGATGAGAATCCTGATGACAGTTTTGTTATaGAAGCCAAAATCATGGATTGCCCTGTATAATTTA +
Preference number: 6 (lower is better)
Translates to: LLAMRILMTVLL*KPKSWIALYNL
Trigger: TAAATTATACAGGGCAATCCATGATTTTGGCTTCCATAACAAAACTGTCATCAGGATTCTCATCGCCAGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034052.14
ENSMUST00000034054.9