RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ANO6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000064210

Ensembl transcript IDs: ENSMUST00000071874.8, ENSMUST00000226793.2, ENSMUST00000227151.2, ENSMUST00000227791.2

Found 291 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCGTTGGTCACCACGGCCAGGATGGCTATTCCTTGCATGATGGGCTaGCACGCGCCGATATCCTGGGCTTTTTCGGGCACCATGCGCCTA +
Preference number: 1 (lower is better)
Translates to: ALVTTARMAIPCMMG*HAPISWAFSGTMRL
Trigger: TAGGCGCATGGTGCCCGAAAAAGCCCAGGATATCGGCGCGTGGCAGCCCATCATGCAAGGAATAGCCATCCTGGCCGTGGTGACCAACGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR GCA 90 bp GCCATGTCTCCTCCAGATGGACTGGAGGAGAAGCGGAGCACAGGCTaGAGAGAGACTGCTCAGCCAAGCAACAGGGAGGGCAAGGCACTA +
Preference number: 1 (lower is better)
Translates to: AMSPPDGLEEKRSTG*RETAQPSNREGKAL
Trigger: TAGTGCCTTGCCCTCCCTGTTGCTTGGCTGAGCAGTCTCTCTGCAGCCTGTGCTCCGCTTCTCCTCCAGTCCATCTGGAGGAGACATGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR GCA 90 bp GCAATGATCATGGCGTTGGTCACCACGGCCAGGATGGCTATTCCTTaGATGATGGGCTGCCACGCGCCGATATCCTGGGCTTTTTCGGGC +
Preference number: 1 (lower is better)
Translates to: AMIMALVTTARMAIP*MMGCHAPISWAFSG
Trigger: GCCCGAAAAAGCCCAGGATATCGGCGCGTGGCAGCCCATCATGCAAGGAATAGCCATCCTGGCCGTGGTGACCAACGCCATGATCATTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR TCA 90 bp GAGACTGCTCAGCCAAGCAACAGGGAGGGCAAGGCACTAGGAAGCTaGGGCTTCGCAGCAAGCCACCAGCAGATAAACCAGCCTTTCCCA +
Preference number: 1 (lower is better)
Translates to: ETAQPSNREGKALGS*GFAASHQQINQPFP
Trigger: TGGGAAAGGCTGGTTTATCTGCTGGTGGCTTGCTGCGAAGCCTCAGCTTCCTAGTGCCTTGCCCTCCCTGTTGCTTGGCTGAGCAGTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR CCA 90 bp ATCAGTCAAGGGTGCGAGGTATCGCCATGTCTCCTCCAGATGGACTaGAGGAGAAGCGGAGCACAGGCTGCAGAGAGACTGCTCAGCCAA +
Preference number: 1 (lower is better)
Translates to: ISQGCEVSPCLLQMD*RRSGAQAAERLLSQ
Trigger: TTGGCTGAGCAGTCTCTCTGCAGCCTGTGCTCCGCTTCTCCTCCAGTCCATCTGGAGGAGACATGGCGATACCTCGCACCCTTGACTGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR GCA 90 bp TCCTCCCTTCTTCACCCAGCACTGACCTCTGTGATCAGTCAAGGGTaGGAGGTATCGCCATGTCTCCTCCAGATGGACTGGAGGAGAAGC +
Preference number: 1 (lower is better)
Translates to: SSLLHPALTSVISQG*EVSPCLLQMDWRRS
Trigger: GCTTCTCCTCCAGTCCATCTGGAGGAGACATGGCGATACCTCGCACCCTTGACTGATCACAGAGGTCAGTGCTGGGTGAAGAAGGGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR CCA 90 bp AGGATGGCTATTCCTTGCATGATGGGCTGCCACGCGCCGATATCCTaGGCTTTTTCGGGCACCATGCGCCTAAACTGGGTTGTGAGCTTC +
Preference number: 1 (lower is better)
Translates to: RMAIPCMMGCHAPIS*AFSGTMRLNWVVSF
Trigger: GAAGCTCACAACCCAGTTTAGGCGCATGGTGCCCGAAAAAGCCCAGGATATCGGCGCGTGGCAGCCCATCATGCAAGGAATAGCCATCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR CCA 90 bp GTCTCCAGCCCAGCTGTGATTACAAACGAGTTAGCAGGCAACGAATaGAGCTGGGCAAGGAAGCTGGTCACCGTGGCAAGCAGAGAAGTC +
Preference number: 1 (lower is better)
Translates to: VSSPAVITNELAGNE*SWARKLVTVASREV
Trigger: GACTTCTCTGCTTGCCACGGTGACCAGCTTCCTTGCCCAGCTCCATTCGTTGCCTGCTAACTCGTTTGTAATCACAGCTGGGCTGGAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR CCA 90 bp CCCCGGGTCACACTCTTCGCTTCTGTATTTGCCCAGCAAGTACACTaGGTCCCCGGGATAGCCCACGAATTTGCCCTTGAAGAATGCGAT +
Preference number: 1 (lower is better)
Translates to: PRVTLFASVFAQQVH*VPGIAHEFALEECD
Trigger: ATCGCATTCTTCAAGGGCAAATTCGTGGGCTATCCCGGGGACCCAGTGTACTTGCTGGGCAAATACAGAAGCGAAGAGTGTGACCCGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR TCA 90 bp CTGGTCACCGTGGCAAGCAGAGAAGTCAGTAGGGTTCCCAGTGAGTaGCATCTGCCACAGAGGGATCACAGGATATGGCTAGTGATTGGG +
Preference number: 1 (lower is better)
Translates to: LVTVASREVSRVPSE*HLPQRDHRIWLVIG
Trigger: CCCAATCACTAGCCATATCCTGTGATCCCTCTGTGGCAGATGTCACTCACTGGGAACCCTACTGACTTCTCTGCTTGCCACGGTGACCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
3UTR CCA 90 bp AGCCCAGCTGTGATTACAAACGAGTTAGCAGGCAACGAATGGAGCTaGGCAAGGAAGCTGGTCACCGTGGCAAGCAGAGAAGTCAGTAGG +
Preference number: 1 (lower is better)
Translates to: SPAVITNELAGNEWS*ARKLVTVASREVSR
Trigger: CCTACTGACTTCTCTGCTTGCCACGGTGACCAGCTTCCTTGCCCAGCTCCATTCGTTGCCTGCTAACTCGTTTGTAATCACAGCTGGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR CCA 90 bp TGGAGTGGGAGTACTTTCCTGTCCTTAGGAAGTGAGCACAGGCTCTaGAAAAGAGGTAACAGAGGGAGCAGGGCACTCCAGGGCAATCTG +
Preference number: 1 (lower is better)
Translates to: WSGSTFLSLGSEHRL*KRGNRGSRALQGNL
Trigger: CAGATTGCCCTGGAGTGCCCTGCTCCCTCTGTTACCTCTTTTCCAGAGCCTGTGCTCACTTCCTAAGGACAGGAAAGTACTCCCACTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR CCA 90 bp GATGATGAAGCTGATGATGGAGGCTGTGATGGATGTGGCCATCTGTaGGGTCAGGTACTTCTGGATCGGGTCTGTCCCGTTGGGGTTCTT +
Preference number: 1 (lower is better)
Translates to: DDEADDGGCDGCGHL*GQVLLDRVCPVGVL
Trigger: AAGAACCCCAACGGGACAGACCCGATCCAGAAGTACCTGACCCCACAGATGGCCACATCCATCACAGCCTCCATCATCAGCTTCATCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR CCA 90 bp CACGCGCCGATATCCTGGGCTTTTTCGGGCACCATGCGCCTAAACTaGGTTGTGAGCTTCCACGCGTCCACTCTTATTTCCAAAATATTG +
Preference number: 1 (lower is better)
Translates to: HAPISWAFSGTMRLN*VVSFHASTLISKIL
Trigger: CAATATTTTGGAAATAAGAGTGGACGCGTGGAAGCTCACAACCCAGTTTAGGCGCATGGTGCCCGAAAAAGCCCAGGATATCGGCGCGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR CCA 90 bp GGCGGCAATCACGTGCCAATAGTAGATGTTGTGTTTATACTCTTGTaGGTGCCCAGGTGGGTTTCGGAAGTCACGGTACCTGCACAAGGT +
Preference number: 1 (lower is better)
Translates to: GGNHVPIVDVVFILL*VPRWVSEVTVPAQG
Trigger: ACCTTGTGCAGGTACCGTGACTTCCGAAACCCACCTGGGCACCCACAAGAGTATAAACACAACATCTACTATTGGCACGTGATTGCCGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR TCA 90 bp AGGGATAGAGAAAGACCAATAATACACCAGGCGGGGGATCATGTCTaGTGTGAAAGCAATGATCATGGCGTTGGTCACCACGGCCAGGAT +
Preference number: 1 (lower is better)
Translates to: RDRERPIIHQAGDHV*CESNDHGVGHHGQD
Trigger: ATCCTGGCCGTGGTGACCAACGCCATGATCATTGCTTTCACATCAGACATGATCCCCCGCCTGGTGTATTATTGGTCTTTCTCTATCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR CCA 90 bp GACCCAGAGCATGCTGGGAGTATTGCTAGAGAGCAAATGTCACCGTaGAGTAACAGGGACAGGCTTCTTCATTCAATACCCTCCATCTTC +
Preference number: 1 (lower is better)
Translates to: DPEHAGSIAREQMSP*SNRDRLLHSIPSIF
Trigger: GAAGATGGAGGGTATTGAATGAAGAAGCCTGTCCCTGTTACTCCACGGTGACATTTGCTCTCTAGCAATACTCCCAGCATGCTCTGGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
3UTR CCA 90 bp GAACATCTTCATGGTCAGGCTGTTCTCATAATCCGTCTGGGTCCTTaGGAGCTCGAAGTTGGTGATCATGATGGCCACCTTCTCGTAGAT +
Preference number: 1 (lower is better)
Translates to: EHLHGQAVLIIRLGP*ELEVGDHDGHLLVD
Trigger: ATCTACGAGAAGGTGGCCATCATGATCACCAACTTCGAGCTCCCAAGGACCCAGACGGATTATGAGAACAGCCTGACCATGAAGATGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR GCA 90 bp TATACTCTTGTGGGTGCCCAGGTGGGTTTCGGAAGTCACGGTACCTaGACAAGGTATAGTTACCAAGCCCAATGTATGGGTTTTCTTTGT +
Preference number: 1 (lower is better)
Translates to: YTLVGAQVGFGSHGT*TRYSYQAQCMGFLC
Trigger: ACAAAGAAAACCCATACATTGGGCTTGGTAACTATACCTTGTGCAGGTACCGTGACTTCCGAAACCCACCTGGGCACCCACAAGAGTATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR CCA 90 bp GTGCCAATAGTAGATGTTGTGTTTATACTCTTGTGGGTGCCCAGGTaGGTTTCGGAAGTCACGGTACCTGCACAAGGTATAGTTACCAAG +
Preference number: 1 (lower is better)
Translates to: VPIVDVVFILLWVPR*VSEVTVPAQGIVTK
Trigger: CTTGGTAACTATACCTTGTGCAGGTACCGTGACTTCCGAAACCCACCTGGGCACCCACAAGAGTATAAACACAACATCTACTATTGGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR GCA 90 bp GGAGTAACAGGGACAGGCTTCTTCATTCAATACCCTCCATCTTCATaGCAATCTAAGACGAGTATTTCTTGGAGGTGGAAATACAGGCTG +
Preference number: 1 (lower is better)
Translates to: GVTGTGFFIQYPPSS*QSKTSISWRWKYRL
Trigger: CAGCCTGTATTTCCACCTCCAAGAAATACTCGTCTTAGATTGGCATGAAGATGGAGGGTATTGAATGAAGAAGCCTGTCCCTGTTACTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
3UTR TCA 90 bp ATCAACAAGGGCTGCTACCTTTTCATCTTATATACCCTTAAGATCTaGAAGCCAGTCAACATTGGTCAGACCCAGAGCATGCTGGGAGTA +
Preference number: 1 (lower is better)
Translates to: INKGCYLFILYTLKI*KPVNIGQTQSMLGV
Trigger: TACTCCCAGCATGCTCTGGGTCTGACCAATGTTGACTGGCTTTCAGATCTTAAGGGTATATAAGATGAAAAGGTAGCAGCCCTTGTTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
3UTR CCA 90 bp TGTGTCTACAAAGAAAGGAAGGGAAAATTTCCTCTTTCTATGGTATaGAGTGGGAGTACTTTCCTGTCCTTAGGAAGTGAGCACAGGCTC +
Preference number: 1 (lower is better)
Translates to: CVYKERKGKFPLSMV*SGSTFLSLGSEHRL
Trigger: GAGCCTGTGCTCACTTCCTAAGGACAGGAAAGTACTCCCACTCCATACCATAGAAAGAGGAAATTTTCCCTTCCTTTCTTTGTAGACACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR CCA 90 bp GAAGTCACGGTACCTGCACAAGGTATAGTTACCAAGCCCAATGTATaGGTTTTCTTTGTCTGTGTTCTTGAAGTCCGTGATGTTGAAGAC +
Preference number: 1 (lower is better)
Translates to: EVTVPAQGIVTKPNV*VFFVCVLEVRDVED
Trigger: GTCTTCAACATCACGGACTTCAAGAACACAGACAAAGAAAACCCATACATTGGGCTTGGTAACTATACCTTGTGCAGGTACCGTGACTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR CCA 90 bp GGCCAGGATGGCTATTCCTTGCATGATGGGCTGCCACGCGCCGATATCCTGGGCAGGCAGAAATGGGCATaGGCAAGACTCCGCCTGCCT +
Preference number: 2 (lower is better)
Translates to: GQDGYSLHDGLPRADILGRQKWA*ARLRLP
Trigger: AGGCAGGCGGAGTCTTGCCCATGCCCATTTCTGCCT...GCCCAGGATATCGGCGCGTGGCAGCCCATCATGCAAGGAATAGCCATCCTGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR GCA 90 bp CCGGGTCACACTCTTCGCTTCTGTATTTGCCCAGCAAGTACACTGGGTCCCCGGGGGCAAGACTCCGCCTaGCTAGGAGTTCCAATGCCA +
Preference number: 2 (lower is better)
Translates to: PGHTLRFCICPASTLGPRGQDSA*LGVPMP
Trigger: TGGCATTGGAACTCCTAGGCAGGCGGAGTCTTGCCC...CCGGGGACCCAGTGTACTTGCTGGGCAAATACAGAAGCGAAGAGTGTGACCCGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR CAA 90 bp AGCAATGATCATGGCGTTGGTCACCACGGCCAGGATGGCTATTCCTaGCATGATGGGCTGCCACGCGCCGATATCCTGGGCTTTTTCGGG +
Preference number: 2 (lower is better)
Translates to: SNDHGVGHHGQDGYS*HDGLPRADILGFFG
Trigger: CCCGAAAAAGCCCAGGATATCGGCGCGTGGCAGCCCATCATGCAAGGAATAGCCATCCTGGCCGTGGTGACCAACGCCATGATCATTGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR TCA 90 bp GGCCAGGATGGCTATTCCTTGCATGATGGGCTGCCACGCGCCGATATCCTGGGCGCTGAAACTGGAAGATaGCACAGGCAGAAATGGGCA +
Preference number: 2 (lower is better)
Translates to: GQDGYSLHDGLPRADILGAETGR*HRQKWA
Trigger: TGCCCATTTCTGCCTGTGTCATCTTCCAGTTTCAGC...GCCCAGGATATCGGCGCGTGGCAGCCCATCATGCAAGGAATAGCCATCCTGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR GCA 90 bp CTCTGGAAAAGAGGTAACAGAGGGAGCAGGGCACTCCAGGGCAATCTGGGGGTAGGGCAAGACTCCGCCTaGCTAGGAGTTCCAATGCCA +
Preference number: 2 (lower is better)
Translates to: LWKRGNRGSRALQGNLGVGQDSA*LGVPMP
Trigger: TGGCATTGGAACTCCTAGGCAGGCGGAGTCTTGCCC...TACCCCCAGATTGCCCTGGAGTGCCCTGCTCCCTCTGTTACCTCTTTTCCAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR-3UTR CCA 90 bp CTCTGGAAAAGAGGTAACAGAGGGAGCAGGGCACTCCAGGGCAATCTGGGGGTAAGGCAGAAATGGGCATaGGCAAGACTCCGCCTGCCT +
Preference number: 2 (lower is better)
Translates to: LWKRGNRGSRALQGNLGVRQKWA*ARLRLP
Trigger: AGGCAGGCGGAGTCTTGCCCATGCCCATTTCTGCCT...TACCCCCAGATTGCCCTGGAGTGCCCTGCTCCCTCTGTTACCTCTTTTCCAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR CAA 90 bp CGGGTGTTGAGAAGGCAGTCTCTAAAACCGCTCACTTTCCTTGGCTaGGTTCCTAGGCACCGAGGCATTCCACACCCATCCAGTCAGCAG +
Preference number: 2 (lower is better)
Translates to: RVLRRQSLKPLTFLG*VPRHRGIPHPSSQQ
Trigger: CTGCTGACTGGATGGGTGTGGAATGCCTCGGTGCCTAGGAACCAAGCCAAGGAAAGTGAGCGGTTTTAGAGACTGCCTTCTCAACACCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR-3UTR GCA 90 bp CAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTCTGTTCTCCGGGCAAGACTCCGCCTaGCTAGGAGTTCCAATGCCA +
Preference number: 2 (lower is better)
Translates to: QDLQVGGFRLCLISFLFSGQDSA*LGVPMP
Trigger: TGGCATTGGAACTCCTAGGCAGGCGGAGTCTTGCCC...GGAGAACAGAAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
3UTR-3UTR CCA 90 bp GTTCTCATGAAGTGGATGGGCTTCCCGGCCCATGATGCTGAGGACGAGACAGTTATCCGTCTGGGTCCTTaGGAGCTCGAAGTTGGTGAT +
Preference number: 2 (lower is better)
Translates to: VLMKWMGFPAHDAEDETVIRLGP*ELEVGD
Trigger: ATCACCAACTTCGAGCTCCCAAGGACCCAGACGGAT...AACTGTCTCGTCCTCAGCATCATGGGCCGGGAAGCCCATCCACTTCATGAGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR TCA 90 bp GGGCAAGGAGTGGCACTTGGTTTCAGCTGTGCAATGAGAGCATCCCTCAGGGAGTTCCACACTGCTTGCTaGAACTGGAAGATGACACAG +
Preference number: 2 (lower is better)
Translates to: GQGVALGFSCAMRASLREFHTAC*NWKMTQ
Trigger: CTGTGTCATCTTCCAGTTTCAGCAAGCAGTGTGGAA...CTCCCTGAGGGATGCTCTCATTGCACAGCTGAAACCAAGTGCCACTCCTTGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR-3UTR CCA 90 bp GAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTAGGCAGAAATGGGCATaGGCAAGACTCCGCCTGCCT +
Preference number: 2 (lower is better)
Translates to: EHVQDLQVGGFRLCLISFRQKWA*ARLRLP
Trigger: AGGCAGGCGGAGTCTTGCCCATGCCCATTTCTGCCT...AAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
3UTR-3UTR GCA 90 bp CTCTGGAAAAGAGGTAACAGAGGGAGCAGGGCACTCCAGGGCAATCTGGGGGTACTCCAGTTTCCACACTaGTTGCTGAAACTGGAAGAT +
Preference number: 2 (lower is better)
Translates to: LWKRGNRGSRALQGNLGVLQFPH*LLKLED
Trigger: ATCTTCCAGTTTCAGCAAGCAGTGTGGAAACTGGAG...TACCCCCAGATTGCCCTGGAGTGCCCTGCTCCCTCTGTTACCTCTTTTCCAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR-3UTR CCA 90 bp TGTTTATACTCTTGTGGGTGCCCAGGTGGGTTTCGGAAGTCACGGTACCTGCACGAGCAAATGTCACCGTaGAGTAACAGGGACAGGCTT +
Preference number: 2 (lower is better)
Translates to: CLYSCGCPGGFRKSRYLHEQMSP*SNRDRL
Trigger: AAGCCTGTCCCTGTTACTCCACGGTGACATTTGCTC...GTGCAGGTACCGTGACTTCCGAAACCCACCTGGGCACCCACAAGAGTATAAACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR CCA 90 bp GTTCTCATGAAGTGGATGGGCTTCCCGGCCCATGATGCTGAGGACGAGACAGTTCAGCCATCAGAGCCATaGGTTCTGGTCAAGGTTTTT +
Preference number: 2 (lower is better)
Translates to: VLMKWMGFPAHDAEDETVQPSEP*VLVKVF
Trigger: AAAAACCTTGACCAGAACCCATGGCTCTGATGGCTG...AACTGTCTCGTCCTCAGCATCATGGGCCGGGAAGCCCATCCACTTCATGAGAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR CAA 90 bp CTTGGCGGCAATCACGTGCCAATAGTAGATGTTGTGTTTATACTCTaGTGGGTGCCCAGGTGGGTTTCGGAAGTCACGGTACCTGCACAA +
Preference number: 2 (lower is better)
Translates to: LGGNHVPIVDVVFIL*WVPRWVSEVTVPAQ
Trigger: TTGTGCAGGTACCGTGACTTCCGAAACCCACCTGGGCACCCACAAGAGTATAAACACAACATCTACTATTGGCACGTGATTGCCGCCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR TCA 90 bp AGTCAACATTGGTCAGACCCAGAGCATGCTGGGAGTATTGCTAGAGAGCAAATGGATCCCCAAACAGTGTaGGGCAGGTCCTCCCTTCTT +
Preference number: 2 (lower is better)
Translates to: SQHWSDPEHAGSIAREQMDPQTV*GRSSLL
Trigger: AAGAAGGGAGGACCTGCCTCACACTGTTTGGGGATC...CATTTGCTCTCTAGCAATACTCCCAGCATGCTCTGGGTCTGACCAATGTTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR-3UTR TCA 90 bp CCGGGTCACACTCTTCGCTTCTGTATTTGCCCAGCAAGTACACTGGGTCCCCGGTGCGATGTAGAAGCATaGGGAGTAATAGTTGACAAA +
Preference number: 2 (lower is better)
Translates to: PGHTLRFCICPASTLGPRCDVEA*GVIVDK
Trigger: TTTGTCAACTATTACTCCTCATGCTTCTACATCGCA...CCGGGGACCCAGTGTACTTGCTGGGCAAATACAGAAGCGAAGAGTGTGACCCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR TCA 90 bp TGTTTATACTCTTGTGGGTGCCCAGGTGGGTTTCGGAAGTCACGGTACCTGCACGCGGGGGATCATGTCTaGTGTGAAAGCAATGATCAT +
Preference number: 2 (lower is better)
Translates to: CLYSCGCPGGFRKSRYLHAGDHV*CESNDH
Trigger: ATGATCATTGCTTTCACATCAGACATGATCCCCCGC...GTGCAGGTACCGTGACTTCCGAAACCCACCTGGGCACCCACAAGAGTATAAACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR CCA 90 bp CGGCAATCACGTGCCAATAGTAGATGTTGTGTTTATACTCTTGTGGGTGCCCAGTCCGTTCTCATGAAGTaGATGGGCTTCCCGGCCCAT +
Preference number: 2 (lower is better)
Translates to: RQSRANSRCCVYTLVGAQSVLMK*MGFPAH
Trigger: ATGGGCCGGGAAGCCCATCCACTTCATGAGAACGGA...CTGGGCACCCACAAGAGTATAAACACAACATCTACTATTGGCACGTGATTGCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR CCA 90 bp GTTCTCATGAAGTGGATGGGCTTCCCGGCCCATGATGCTGAGGACGAGACAGTTCCTCTTTCTATGGTATaGAGTGGGAGTACTTTCCTG +
Preference number: 2 (lower is better)
Translates to: VLMKWMGFPAHDAEDETVPLSMV*SGSTFL
Trigger: CAGGAAAGTACTCCCACTCCATACCATAGAAAGAGG...AACTGTCTCGTCCTCAGCATCATGGGCCGGGAAGCCCATCCACTTCATGAGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR-3UTR CCA 90 bp GCGTCCACTCTTATTTCCAAAATATTGTTCACCAGAGCCAGCAGGGGAGCCAGTATCCCAGCTTGCCCATaGGCTGCAGATGGTAATCCT +
Preference number: 2 (lower is better)
Translates to: ASTLISKILFTRASRGASIPACP*AADGNP
Trigger: AGGATTACCATCTGCAGCCCATGGGCAAGCTGGGAT...ACTGGCTCCCCTGCTGGCTCTGGTGAACAATATTTTGGAAATAAGAGTGGACGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR TCA 90 bp CAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTCTGTTCTCCTTCCACACTGCTTGCTaGAACTGGAAGATGACACAG +
Preference number: 2 (lower is better)
Translates to: QDLQVGGFRLCLISFLFSFHTAC*NWKMTQ
Trigger: CTGTGTCATCTTCCAGTTTCAGCAAGCAGTGTGGAA...GGAGAACAGAAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
3UTR-3UTR TCA 90 bp ATGTCTGATGTGAAAGCAATGATCATGGCGTTGGTCACCACGGCCAGGATGGCTCCACGAATTTGCCCTTaGAGAATGCGATGTAGAAGC +
Preference number: 2 (lower is better)
Translates to: MSDVKAMIMALVTTARMAPRICP*RMRCRS
Trigger: GCTTCTACATCGCATTCTTCAAGGGCAAATTCGTGG...AGCCATCCTGGCCGTGGTGACCAACGCCATGATCATTGCTTTCACATCAGACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR GCA 90 bp ATGTCTGATGTGAAAGCAATGATCATGGCGTTGGTCACCACGGCCAGGATGGCTCTCCAGTTTCCACACTaGTTGCTGAAACTGGAAGAT +
Preference number: 2 (lower is better)
Translates to: MSDVKAMIMALVTTARMALQFPH*LLKLED
Trigger: ATCTTCCAGTTTCAGCAAGCAGTGTGGAAACTGGAG...AGCCATCCTGGCCGTGGTGACCAACGCCATGATCATTGCTTTCACATCAGACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR GCA 90 bp CAGCTTGGCGGCAATCACGTGCCAATAGTAGATGTTGTGTTTATACTCTTGTGGCCAGTGAGTGACATCTaGCACAGAGGGATCACAGGA +
Preference number: 2 (lower is better)
Translates to: QLGGNHVPIVDVVFILLWPVSDI*HRGITG
Trigger: TCCTGTGATCCCTCTGTGGCAGATGTCACTCACTGG...CCACAAGAGTATAAACACAACATCTACTATTGGCACGTGATTGCCGCCAAGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR GCA 90 bp CAGCTTGGCGGCAATCACGTGCCAATAGTAGATGTTGTGTTTATACTCTTGTGGAGAACAATCCCAGCTTaGCCATGGGCTGCAGATGGT +
Preference number: 2 (lower is better)
Translates to: QLGGNHVPIVDVVFILLWRTIPA*PWAADG
Trigger: ACCATCTGCAGCCCATGGGCAAGCTGGGATTGTTCT...CCACAAGAGTATAAACACAACATCTACTATTGGCACGTGATTGCCGCCAAGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR TCA 90 bp CCAATTTATCAAAAGAGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGGCTGAAACTGGAAGATaGCACAGGCAGAAATGGGCA +
Preference number: 2 (lower is better)
Translates to: PIYQKREHVQDLQVGGFRAETGR*HRQKWA
Trigger: TGCCCATTTCTGCCTGTGTCATCTTCCAGTTTCAGC...CCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCTCTTTTGATAAATTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
3UTR-3UTR CCA 90 bp GTTCTCATGAAGTGGATGGGCTTCCCGGCCCATGATGCTGAGGACGAGACAGTTGATTTTGGACACATCTaGAATTGCGTAGGAAATGAA +
Preference number: 2 (lower is better)
Translates to: VLMKWMGFPAHDAEDETVDFGHI*NCVGNE
Trigger: TTCATTTCCTACGCAATTCCAGATGTGTCCAAAATC...AACTGTCTCGTCCTCAGCATCATGGGCCGGGAAGCCCATCCACTTCATGAGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR TCA 90 bp GCTTCCCGGCCCATGATGCTGAGGACGAGACAGTTACAATCATTTGATTATCATAATACTGTGAACTCTTaGGCCTACCTGGGACCTAAC +
Preference number: 2 (lower is better)
Translates to: ASRPMMLRTRQLQSFDYHNTVNS*AYLGPN
Trigger: GTTAGGTCCCAGGTAGGCTCAAGAGTTCACAGTATT...ATGATAATCAAATGATTGTAACTGTCTCGTCCTCAGCATCATGGGCCGGGAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
3UTR-3UTR TCA 90 bp TCTTCATGCCAATCTAAGACGAGTATTTCTTGGAGGTGGAAATACAGGCTGAAAGTTTCAGCTGTGCAATaGGAGCATCCCTCAGGGAGG +
Preference number: 2 (lower is better)
Translates to: SSCQSKTSISWRWKYRLKVSAVQ*EHPSGR
Trigger: CCTCCCTGAGGGATGCTCTCATTGCACAGCTGAAAC...TTTCAGCCTGTATTTCCACCTCCAAGAAATACTCGTCTTAGATTGGCATGAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR-3UTR TCA 90 bp TTTTATCTCAGCACAGATAGACACTGTATGGCGGGCTCTGGACTCCCAGGACAATATACCCTTAAGATCTaGAAGCCAGTCAACATTGGT +
Preference number: 2 (lower is better)
Translates to: FYLSTDRHCMAGSGLPGQYTLKI*KPVNIG
Trigger: ACCAATGTTGACTGGCTTTCAGATCTTAAGGGTATA...TTGTCCTGGGAGTCCAGAGCCCGCCATACAGTGTCTATCTGTGCTGAGATAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR-3UTR TCA 90 bp TTTCTTTGTGTCTACAAAGAAAGGAAGGGAAAATTTCCTCTTTCTATGGTATGGAACCCCCTGATGGCTTaGGAGGAGGCTTGGGGCTCA +
Preference number: 2 (lower is better)
Translates to: FLCVYKERKGKFPLSMVWNPLMA*EEAWGS
Trigger: TGAGCCCCAAGCCTCCTCTCAAGCCATCAGGGGGTT...CCATACCATAGAAAGAGGAAATTTTCCCTTCCTTTCTTTGTAGACACAAAGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR-3UTR TCA 90 bp AGTCAACATTGGTCAGACCCAGAGCATGCTGGGAGTATTGCTAGAGAGCAAATGCCCAGAACACTGCTTTaGTTAATCATGTTGATTCTC +
Preference number: 2 (lower is better)
Translates to: SQHWSDPEHAGSIAREQMPRTLL*LIMLIL
Trigger: GAGAATCAACATGATTAATCAAAGCAGTGTTCTGGG...CATTTGCTCTCTAGCAATACTCCCAGCATGCTCTGGGTCTGACCAATGTTGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR-3UTR GCA 90 bp TCAAAGGGCAACAATCTTGGTAGACTTGTCTCCAGCCCAGCTGTGATTACAAACTACCCTCCATCTTCATaGCAATCTAAGACGAGTATT +
Preference number: 2 (lower is better)
Translates to: SKGNNLGRLVSSPAVITNYPPSS*QSKTSI
Trigger: AATACTCGTCTTAGATTGGCATGAAGATGGAGGGTA...GTTTGTAATCACAGCTGGGCTGGAGACAAGTCTACCAAGATTGTTGCCCTTTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR-3UTR GCA 90 bp GCTTCCCGGCCCATGATGCTGAGGACGAGACAGTTACAATCATTTGATTATCATTACCCTCCATCTTCATaGCAATCTAAGACGAGTATT +
Preference number: 2 (lower is better)
Translates to: ASRPMMLRTRQLQSFDYHYPPSS*QSKTSI
Trigger: AATACTCGTCTTAGATTGGCATGAAGATGGAGGGTA...ATGATAATCAAATGATTGTAACTGTCTCGTCCTCAGCATCATGGGCCGGGAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
3UTR-3UTR CCA 90 bp TTTGTGTCTACAAAGAAAGGAAGGGAAAATTTCCTCTTTCTATGGTATGGAGTGTTAGCAGGCAACGAATaGAGCTGGGCAAGGAAGCTG +
Preference number: 2 (lower is better)
Translates to: FVSTKKGRENFLFLWYGVLAGNE*SWARKL
Trigger: CAGCTTCCTTGCCCAGCTCCATTCGTTGCCTGCTAA...CACTCCATACCATAGAAAGAGGAAATTTTCCCTTCCTTTCTTTGTAGACACAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR-3UTR GCA 90 bp TCTTCATGCCAATCTAAGACGAGTATTTCTTGGAGGTGGAAATACAGGCTGAAAGGTGGTTTTAGGCTCTaGCTGATCAGTTTTCTGTTC +
Preference number: 2 (lower is better)
Translates to: SSCQSKTSISWRWKYRLKGGFRL*LISFLF
Trigger: GAACAGAAAACTGATCAGGCAGAGCCTAAAACCACC...TTTCAGCCTGTATTTCCACCTCCAAGAAATACTCGTCTTAGATTGGCATGAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
3UTR-3UTR GCA 90 bp TTTCTTTGTGTCTACAAAGAAAGGAAGGGAAAATTTCCTCTTTCTATGGTATGGCCAGTGAGTGACATCTaGCACAGAGGGATCACAGGA +
Preference number: 2 (lower is better)
Translates to: FLCVYKERKGKFPLSMVWPVSDI*HRGITG
Trigger: TCCTGTGATCCCTCTGTGGCAGATGTCACTCACTGG...CCATACCATAGAAAGAGGAAATTTTCCCTTCCTTTCTTTGTAGACACAAAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR-3UTR CCA 90 bp TATCATCTACCAAGAAGAGATAAATTAACCGTTCAGATCAACAAGGGCTGCTACGATATGGCTAGTGATTaGGTAGCTGGCTGTTGCTCT +
Preference number: 2 (lower is better)
Translates to: YHLPRRDKLTVQINKGCYDMASD*VAGCCS
Trigger: AGAGCAACAGCCAGCTACCCAATCACTAGCCATATC...GTAGCAGCCCTTGTTGATCTGAACGGTTAATTTATCTCTTCTTGGTAGATGATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
3UTR-3UTR CCA 90 bp TTTCTTTGTGTCTACAAAGAAAGGAAGGGAAAATTTCCTCTTTCTATGGTATGGTCACTTTCCTTGGCTTaGTTCCTAGGCACCGAGGCA +
Preference number: 2 (lower is better)
Translates to: FLCVYKERKGKFPLSMVWSLSLA*FLGTEA
Trigger: TGCCTCGGTGCCTAGGAACCAAGCCAAGGAAAGTGA...CCATACCATAGAAAGAGGAAATTTTCCCTTCCTTTCTTTGTAGACACAAAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR-3UTR TCA 90 bp CCCATGATGCTGAGGACGAGACAGTTACAATCATTTGATTATCATCTACCAAGAGAATTGCGTAGGAAATaGAGAACTTCACAGAGTAGA +
Preference number: 2 (lower is better)
Translates to: PMMLRTRQLQSFDYHLPRELRRK*RTSQSR
Trigger: TCTACTCTGTGAAGTTCTTCATTTCCTACGCAATTC...TCTTGGTAGATGATAATCAAATGATTGTAACTGTCTCGTCCTCAGCATCATGGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR GCA 90 bp TTTCTTTGTGTCTACAAAGAAAGGAAGGGAAAATTTCCTCTTTCTATGGTATGGACTTGGTTTCAGCTGTaGAATGAGAGCATCCCTCAG +
Preference number: 2 (lower is better)
Translates to: FLCVYKERKGKFPLSMVWTWFQL*NESIPQ
Trigger: CTGAGGGATGCTCTCATTGCACAGCTGAAACCAAGT...CCATACCATAGAAAGAGGAAATTTTCCCTTCCTTTCTTTGTAGACACAAAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR-3UTR GCA 90 bp CCCATGATGCTGAGGACGAGACAGTTACAATCATTTGATTATCATCTACCAAGAGGACACATCTGGAATTaGGTAGGAAATGAAGAACTT +
Preference number: 2 (lower is better)
Translates to: PMMLRTRQLQSFDYHLPRGHIWN*VGNEEL
Trigger: AAGTTCTTCATTTCCTACGCAATTCCAGATGTGTCC...TCTTGGTAGATGATAATCAAATGATTGTAACTGTCTCGTCCTCAGCATCATGGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR GCA 72 bp ACCACGGCCAGGATGGCTATTCCTTGCATGATGGGCTaGCACGCGCCGATATCCTGGGCTTTTTCGGGCACC +
Preference number: 3 (lower is better)
Translates to: TTARMAIPCMMG*HAPISWAFSGT
Trigger: GGTGCCCGAAAAAGCCCAGGATATCGGCGCGTGGCAGCCCATCATGCAAGGAATAGCCATCCTGGCCGTGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR GCA 72 bp ATGGCGTTGGTCACCACGGCCAGGATGGCTATTCCTTaGATGATGGGCTGCCACGCGCCGATATCCTGGGCT +
Preference number: 3 (lower is better)
Translates to: MALVTTARMAIP*MMGCHAPISWA
Trigger: AGCCCAGGATATCGGCGCGTGGCAGCCCATCATGCAAGGAATAGCCATCCTGGCCGTGGTGACCAACGCCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR CCA 72 bp CAGCGTGACCCGGATGCACTTCCCACAGGTGGTAAATaGGATGCGCTCCTCCTCCTGGCAAAGGCTCTCAGC +
Preference number: 3 (lower is better)
Translates to: QRDPDALPTGGK*DALLLLAKALS
Trigger: GCTGAGAGCCTTTGCCAGGAGGAGGAGCGCATCCCATTTACCACCTGTGGGAAGTGCATCCGGGTCACGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR TCA 72 bp CAGCCAAGCAACAGGGAGGGCAAGGCACTAGGAAGCTaGGGCTTCGCAGCAAGCCACCAGCAGATAAACCAG +
Preference number: 3 (lower is better)
Translates to: QPSNREGKALGS*GFAASHQQINQ
Trigger: CTGGTTTATCTGCTGGTGGCTTGCTGCGAAGCCTCAGCTTCCTAGTGCCTTGCCCTCCCTGTTGCTTGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR TCA 72 bp CGTTGGTCACCACGGCCAGGATGGCTATTCCTTGCATaGTGGGCTGCCACGCGCCGATATCCTGGGCTTTTT +
Preference number: 3 (lower is better)
Translates to: RWSPRPGWLFLA*WAATRRYPGLF
Trigger: AAAAAGCCCAGGATATCGGCGCGTGGCAGCCCATCATGCAAGGAATAGCCATCCTGGCCGTGGTGACCAACG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR CAA 90 bp GGAGCACAGGCTGCAGAGAGACTGCTCAGCCAAGCAACAGGGAGGGCAAGGCACATCCTGAGCTGGCTATaGTTGATAACACAGAGGCGA +
Preference number: 3 (lower is better)
Translates to: GAQAAERLLSQATGRARHILSWL*LITQRR
Trigger: TCGCCTCTGTGTTATCAACAATAGCCAGCTCAGGAT...GTGCCTTGCCCTCCCTGTTGCTTGGCTGAGCAGTCTCTCTGCAGCCTGTGCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR-3UTR CAA 90 bp CCGGGTCACACTCTTCGCTTCTGTATTTGCCCAGCAAGTACACTGGGTCCCCGGGCGGAGTCTCCTTCCTaGGAGTGTACAGTAAGACAC +
Preference number: 3 (lower is better)
Translates to: PGHTLRFCICPASTLGPRAESPS*ECTVRH
Trigger: GTGTCTTACTGTACACTCCAAGGAAGGAGACTCCGC...CCGGGGACCCAGTGTACTTGCTGGGCAAATACAGAAGCGAAGAGTGTGACCCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR TCA 72 bp AGTGCCACCCTTCTGCATCTGCTAAGTCCGTTCTCATaGAGTGGATGGGCTTCCCGGCCCATGATGCTGAGG +
Preference number: 3 (lower is better)
Translates to: SATLLHLLSPFS*SGWASRPMMLR
Trigger: CCTCAGCATCATGGGCCGGGAAGCCCATCCACTTCATGAGAACGGACTTAGCAGATGCAGAAGGGTGGCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
3UTR GCA 72 bp CTTCACCCAGCACTGACCTCTGTGATCAGTCAAGGGTaGGAGGTATCGCCATGTCTCCTCCAGATGGACTGG +
Preference number: 3 (lower is better)
Translates to: LHPALTSVISQG*EVSPCLLQMDW
Trigger: CCAGTCCATCTGGAGGAGACATGGCGATACCTCGCACCCTTGACTGATCACAGAGGTCAGTGCTGGGTGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR CCA 72 bp CACCCTTCTGCATCTGCTAAGTCCGTTCTCATGAAGTaGATGGGCTTCCCGGCCCATGATGCTGAGGACGAG +
Preference number: 3 (lower is better)
Translates to: HPSASAKSVLMK*MGFPAHDAEDE
Trigger: CTCGTCCTCAGCATCATGGGCCGGGAAGCCCATCCACTTCATGAGAACGGACTTAGCAGATGCAGAAGGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
3UTR CCA 72 bp TTCCCACAGGTGGTAAATGGGATGCGCTCCTCCTCCTaGCAAAGGCTCTCAGCCATCAGAGCCATGGGTTCT +
Preference number: 3 (lower is better)
Translates to: FPQVVNGMRSSS*QRLSAIRAMGS
Trigger: AGAACCCATGGCTCTGATGGCTGAGAGCCTTTGCCAGGAGGAGGAGCGCATCCCATTTACCACCTGTGGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR CCA 72 bp ATTCCTTGCATGATGGGCTGCCACGCGCCGATATCCTaGGCTTTTTCGGGCACCATGCGCCTAAACTGGGTT +
Preference number: 3 (lower is better)
Translates to: IPCMMGCHAPIS*AFSGTMRLNWV
Trigger: AACCCAGTTTAGGCGCATGGTGCCCGAAAAAGCCCAGGATATCGGCGCGTGGCAGCCCATCATGCAAGGAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR CCA 72 bp CCAGCTGTGATTACAAACGAGTTAGCAGGCAACGAATaGAGCTGGGCAAGGAAGCTGGTCACCGTGGCAAGC +
Preference number: 3 (lower is better)
Translates to: PAVITNELAGNE*SWARKLVTVAS
Trigger: GCTTGCCACGGTGACCAGCTTCCTTGCCCAGCTCCATTCGTTGCCTGCTAACTCGTTTGTAATCACAGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR-3UTR CAA 90 bp GTTCTCATGAAGTGGATGGGCTTCCCGGCCCATGATGCTGAGGACGAGACAGTTGAAAGCCAGTCAACATaGGTCAGACCCAGAGCATGC +
Preference number: 3 (lower is better)
Translates to: VLMKWMGFPAHDAEDETVESQST*VRPRAC
Trigger: GCATGCTCTGGGTCTGACCAATGTTGACTGGCTTTC...AACTGTCTCGTCCTCAGCATCATGGGCCGGGAAGCCCATCCACTTCATGAGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
3UTR TCA 72 bp TCTCCAGTTTCCACACTGCTTGCTGAAACTGGAAGATaGCACAGGCAGAAATGGGCATGGGCAAGACTCCGC +
Preference number: 3 (lower is better)
Translates to: SPVSTLLAETGR*HRQKWAWARLR
Trigger: GCGGAGTCTTGCCCATGCCCATTTCTGCCTGTGTCATCTTCCAGTTTCAGCAAGCAGTGTGGAAACTGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
3UTR TCA 72 bp GTGGCAAGCAGAGAAGTCAGTAGGGTTCCCAGTGAGTaGCATCTGCCACAGAGGGATCACAGGATATGGCTA +
Preference number: 3 (lower is better)
Translates to: VASREVSRVPSE*HLPQRDHRIWL
Trigger: TAGCCATATCCTGTGATCCCTCTGTGGCAGATGTCACTCACTGGGAACCCTACTGACTTCTCTGCTTGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
3UTR CCA 72 bp GTAGTCATTTTTATCTCAGCACAGATAGACACTGTATaGCGGGCTCTGGACTCCCAGGACAAGGGAGGAGGG +
Preference number: 3 (lower is better)
Translates to: VVIFISAQIDTV*RALDSQDKGGG
Trigger: CCCTCCTCCCTTGTCCTGGGAGTCCAGAGCCCGCCATACAGTGTCTATCTGTGCTGAGATAAAAATGACTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR CCA 72 bp AGTACTTTCCTGTCCTTAGGAAGTGAGCACAGGCTCTaGAAAAGAGGTAACAGAGGGAGCAGGGCACTCCAG +
Preference number: 3 (lower is better)
Translates to: STFLSLGSEHRL*KRGNRGSRALQ
Trigger: CTGGAGTGCCCTGCTCCCTCTGTTACCTCTTTTCCAGAGCCTGTGCTCACTTCCTAAGGACAGGAAAGTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR CCA 72 bp CATGGTCAGGCTGTTCTCATAATCCGTCTGGGTCCTTaGGAGCTCGAAGTTGGTGATCATGATGGCCACCTT +
Preference number: 3 (lower is better)
Translates to: HGQAVLIIRLGP*ELEVGDHDGHL
Trigger: AAGGTGGCCATCATGATCACCAACTTCGAGCTCCCAAGGACCCAGACGGATTATGAGAACAGCCTGACCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR CCA 72 bp ACACTCTTCGCTTCTGTATTTGCCCAGCAAGTACACTaGGTCCCCGGGATAGCCCACGAATTTGCCCTTGAA +
Preference number: 3 (lower is better)
Translates to: TLFASVFAQQVH*VPGIAHEFALE
Trigger: TTCAAGGGCAAATTCGTGGGCTATCCCGGGGACCCAGTGTACTTGCTGGGCAAATACAGAAGCGAAGAGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR CCA 72 bp ATATCCTGGGCTTTTTCGGGCACCATGCGCCTAAACTaGGTTGTGAGCTTCCACGCGTCCACTCTTATTTCC +
Preference number: 3 (lower is better)
Translates to: ISWAFSGTMRLN*VVSFHASTLIS
Trigger: GGAAATAAGAGTGGACGCGTGGAAGCTCACAACCCAGTTTAGGCGCATGGTGCCCGAAAAAGCCCAGGATAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR CAA 90 bp TGTTTATACTCTTGTGGGTGCCCAGGTGGGTTTCGGAAGTCACGGTACCTGCACCAGTTTCCACACTGCTaGCTGAAACTGGAAGATGAC +
Preference number: 3 (lower is better)
Translates to: CLYSCGCPGGFRKSRYLHQFPHC*LKLEDD
Trigger: GTCATCTTCCAGTTTCAGCAAGCAGTGTGGAAACTG...GTGCAGGTACCGTGACTTCCGAAACCCACCTGGGCACCCACAAGAGTATAAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR CAA 90 bp AGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTCAGTTTCCACACTGCTaGCTGAAACTGGAAGATGAC +
Preference number: 3 (lower is better)
Translates to: REHVQDLQVGGFRLCLISQFPHC*LKLEDD
Trigger: GTCATCTTCCAGTTTCAGCAAGCAGTGTGGAAACTG...ACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
3UTR TCA 72 bp AGGGGCAAGGAGTGGCACTTGGTTTCAGCTGTGCAATaGGAGCATCCCTCAGGGAGGAAGGTAGTCATTTTT +
Preference number: 3 (lower is better)
Translates to: RGKEWHLVSAVQ*EHPSGRKVVIF
Trigger: AAAAATGACTACCTTCCTCCCTGAGGGATGCTCTCATTGCACAGCTGAAACCAAGTGCCACTCCTTGCCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR TCA 72 bp ACACTGGGTCCCCGGGATAGCCCACGAATTTGCCCTTaGAGAATGCGATGTAGAAGCATGAGGAGTAATAGT +
Preference number: 3 (lower is better)
Translates to: TLGPRDSPRICP*RMRCRSMRSNS
Trigger: ACTATTACTCCTCATGCTTCTACATCGCATTCTTCAAGGGCAAATTCGTGGGCTATCCCGGGGACCCAGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR CCA 72 bp CACGTGCCAATAGTAGATGTTGTGTTTATACTCTTGTaGGTGCCCAGGTGGGTTTCGGAAGTCACGGTACCT +
Preference number: 3 (lower is better)
Translates to: HVPIVDVVFILL*VPRWVSEVTVP
Trigger: AGGTACCGTGACTTCCGAAACCCACCTGGGCACCCACAAGAGTATAAACACAACATCTACTATTGGCACGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR CAA 90 bp GCTTCCCGGCCCATGATGCTGAGGACGAGACAGTTACAATCATTTGATTATCATGCGGAGTCTCCTTCCTaGGAGTGTACAGTAAGACAC +
Preference number: 3 (lower is better)
Translates to: ASRPMMLRTRQLQSFDYHAESPS*ECTVRH
Trigger: GTGTCTTACTGTACACTCCAAGGAAGGAGACTCCGC...ATGATAATCAAATGATTGTAACTGTCTCGTCCTCAGCATCATGGGCCGGGAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
3UTR-3UTR CAA 90 bp AGTCAACATTGGTCAGACCCAGAGCATGCTGGGAGTATTGCTAGAGAGCAAATGTCTTCGCTTCTGTATTaGCCCAGCAAGTACACTGGG +
Preference number: 3 (lower is better)
Translates to: SQHWSDPEHAGSIAREQMSSLLY*PSKYTG
Trigger: CCCAGTGTACTTGCTGGGCAAATACAGAAGCGAAGA...CATTTGCTCTCTAGCAATACTCCCAGCATGCTCTGGGTCTGACCAATGTTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR CAA 90 bp TGTTTATACTCTTGTGGGTGCCCAGGTGGGTTTCGGAAGTCACGGTACCTGCACAAGACTTCTTGTATGTaGTTCCAGATTGCCTTTCCC +
Preference number: 3 (lower is better)
Translates to: CLYSCGCPGGFRKSRYLHKTSCM*FQIAFP
Trigger: GGGAAAGGCAATCTGGAACAACATACAAGAAGTCTT...GTGCAGGTACCGTGACTTCCGAAACCCACCTGGGCACCCACAAGAGTATAAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR GCA 72 bp CATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTaGCTGATCAGTTTTCTGTTCTCCAGTTTCCACACT +
Preference number: 3 (lower is better)
Translates to: HVQDLQVGGFRL*LISFLFSSFHT
Trigger: AGTGTGGAAACTGGAGAACAGAAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
3UTR CCA 72 bp CATGCTGGGAGTATTGCTAGAGAGCAAATGTCACCGTaGAGTAACAGGGACAGGCTTCTTCATTCAATACCC +
Preference number: 3 (lower is better)
Translates to: HAGSIAREQMSP*SNRDRLLHSIP
Trigger: GGGTATTGAATGAAGAAGCCTGTCCCTGTTACTCCACGGTGACATTTGCTCTCTAGCAATACTCCCAGCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
3UTR CCA 72 bp GTAGATGTTGTGTTTATACTCTTGTGGGTGCCCAGGTaGGTTTCGGAAGTCACGGTACCTGCACAAGGTATA +
Preference number: 3 (lower is better)
Translates to: VDVVFILLWVPR*VSEVTVPAQGI
Trigger: TATACCTTGTGCAGGTACCGTGACTTCCGAAACCCACCTGGGCACCCACAAGAGTATAAACACAACATCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR-3UTR CAA 90 bp GCTTCCCGGCCCATGATGCTGAGGACGAGACAGTTACAATCATTTGATTATCATAGCATGCTGGGAGTATaGCTAGAGAGCAAATGTCAC +
Preference number: 3 (lower is better)
Translates to: ASRPMMLRTRQLQSFDYHSMLGV*LESKCH
Trigger: GTGACATTTGCTCTCTAGCAATACTCCCAGCATGCT...ATGATAATCAAATGATTGTAACTGTCTCGTCCTCAGCATCATGGGCCGGGAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
3UTR TCA 72 bp ACGAGTATTTCTTGGAGGTGGAAATACAGGCTGAAATaGTACAGAAGCTGTTTCATACGCAGCGGAGTCTCC +
Preference number: 3 (lower is better)
Translates to: TSISWRWKYRLK*YRSCFIRSGVS
Trigger: GGAGACTCCGCTGCGTATGAAACAGCTTCTGTATCATTTCAGCCTGTATTTCCACCTCCAAGAAATACTCGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
3UTR-3UTR CAA 90 bp TCTTCATGCCAATCTAAGACGAGTATTTCTTGGAGGTGGAAATACAGGCTGAAACAGTTTCCACACTGCTaGCTGAAACTGGAAGATGAC +
Preference number: 3 (lower is better)
Translates to: SSCQSKTSISWRWKYRLKQFPHC*LKLEDD
Trigger: GTCATCTTCCAGTTTCAGCAAGCAGTGTGGAAACTG...TTTCAGCCTGTATTTCCACCTCCAAGAAATACTCGTCTTAGATTGGCATGAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
3UTR CCA 72 bp GTACCTGCACAAGGTATAGTTACCAAGCCCAATGTATaGGTTTTCTTTGTCTGTGTTCTTGAAGTCCGTGAT +
Preference number: 3 (lower is better)
Translates to: VPAQGIVTKPNV*VFFVCVLEVRD
Trigger: ATCACGGACTTCAAGAACACAGACAAAGAAAACCCATACATTGGGCTTGGTAACTATACCTTGTGCAGGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR CCA 72 bp AAAGAAAGGAAGGGAAAATTTCCTCTTTCTATGGTATaGAGTGGGAGTACTTTCCTGTCCTTAGGAAGTGAG +
Preference number: 3 (lower is better)
Translates to: KERKGKFPLSMV*SGSTFLSLGSE
Trigger: CTCACTTCCTAAGGACAGGAAAGTACTCCCACTCCATACCATAGAAAGAGGAAATTTTCCCTTCCTTTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR-3UTR CAA 90 bp TCTTCATGCCAATCTAAGACGAGTATTTCTTGGAGGTGGAAATACAGGCTGAAAGCCCAGAACACTGCTTaGATTAATCATGTTGATTCT +
Preference number: 3 (lower is better)
Translates to: SSCQSKTSISWRWKYRLKAQNTA*INHVDS
Trigger: AGAATCAACATGATTAATCAAAGCAGTGTTCTGGGC...TTTCAGCCTGTATTTCCACCTCCAAGAAATACTCGTCTTAGATTGGCATGAAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR TCA 72 bp ACCCCCTGGGCTACTCAAAAGCCCAGAACACTGCTTTaGTTAATCATGTTGATTCTCAATTCTCTAGTAAAT +
Preference number: 3 (lower is better)
Translates to: TPWATQKPRTLL*LIMLILNSLVN
Trigger: ATTTACTAGAGAATTGAGAATCAACATGATTAATCAAAGCAGTGTTCTGGGCTTTTGAGTAGCCCAGGGGGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR-3UTR CAA 90 bp TATCATCTACCAAGAAGAGATAAATTAACCGTTCAGATCAACAAGGGCTGCTACAGGTCTGGGATAGATTaGGCAAAATGCAAAATTAAG +
Preference number: 3 (lower is better)
Translates to: YHLPRRDKLTVQINKGCYRSGID*AKCKIK
Trigger: CTTAATTTTGCATTTTGCCAAATCTATCCCAGACCT...GTAGCAGCCCTTGTTGATCTGAACGGTTAATTTATCTCTTCTTGGTAGATGATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
3UTR CAA 72 bp CATGGCGTTGGTCACCACGGCCAGGATGGCTATTCCTaGCATGATGGGCTGCCACGCGCCGATATCCTGGGC +
Preference number: 4 (lower is better)
Translates to: HGVGHHGQDGYS*HDGLPRADILG
Trigger: GCCCAGGATATCGGCGCGTGGCAGCCCATCATGCAAGGAATAGCCATCCTGGCCGTGGTGACCAACGCCATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
CDS-3UTR TCA 90 bp AGGCAGAAATGGGCATGGGCAAGACTCCGCCTGCCTAGGAGTTCCAATGCCATCGCCTCTGGCCATCGGTaGAAAAGAGGGAGTCGGGCT +
Preference number: 4 (lower is better)
Translates to: RQKWAWARLRLPRSSNAIASGHR*KRGSRA
Trigger: AGCCCGACTCCCTCTTTTTCACCGATGGCCAGAGGC...GATGGCATTGGAACTCCTAGGCAGGCGGAGTCTTGCCCATGCCCATTTCTGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CCA 90 bp GGGCAAGGAGTGGCACTTGGTTTCAGCTGTGCAATGAGAGCATCCCTCAGGGAGCTGGGCCTCATACTCTaGCCGGGCCTGTTCCTCTTG +
Preference number: 4 (lower is better)
Translates to: GQGVALGFSCAMRASLRELGLIL*PGLFLL
Trigger: CAAGAGGAACAGGCCCGGCCAGAGTATGAGGCCCAG...CTCCCTGAGGGATGCTCTCATTGCACAGCTGAAACCAAGTGCCACTCCTTGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR CCA 90 bp AGGCAGAAATGGGCATGGGCAAGACTCCGCCTGCCTAGGAGTTCCAATGCCATCCTGGGCCTCATACTCTaGCCGGGCCTGTTCCTCTTG +
Preference number: 4 (lower is better)
Translates to: RQKWAWARLRLPRSSNAILGLIL*PGLFLL
Trigger: CAAGAGGAACAGGCCCGGCCAGAGTATGAGGCCCAG...GATGGCATTGGAACTCCTAGGCAGGCGGAGTCTTGCCCATGCCCATTTCTGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CCA 90 bp GGCCAGGATGGCTATTCCTTGCATGATGGGCTGCCACGCGCCGATATCCTGGGCAAATCTGCCTGCCTCTaGCTCCCAAGTGCTGGGATT +
Preference number: 4 (lower is better)
Translates to: GQDGYSLHDGLPRADILGKSACL*LPSAGI
Trigger: AATCCCAGCACTTGGGAGCCAGAGGCAGGCAGATTT...GCCCAGGATATCGGCGCGTGGCAGCCCATCATGCAAGGAATAGCCATCCTGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
CDS-3UTR CCA 90 bp TGCTCAGCCAAGCAACAGGGAGGGCAAGGCACTAGGAAGCTGAGGCTTCGCAGCATCCGTCTGGGTCCTTaGGAGCTCGAAGTTGGTGAT +
Preference number: 4 (lower is better)
Translates to: CSAKQQGGQGTRKLRLRSIRLGP*ELEVGD
Trigger: ATCACCAACTTCGAGCTCCCAAGGACCCAGACGGAT...GCTGCGAAGCCTCAGCTTCCTAGTGCCTTGCCCTCCCTGTTGCTTGGCTGAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR TCA 90 bp AGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTGGCTATTCCTTGCATaGTGGGCTGCCACGCGCCGA +
Preference number: 4 (lower is better)
Translates to: REHVQDLQVGGFRLCLISWLFLA*WAATRR
Trigger: TCGGCGCGTGGCAGCCCATCATGCAAGGAATAGCCA...ACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR GCA 90 bp GGAGCACAGGCTGCAGAGAGACTGCTCAGCCAAGCAACAGGGAGGGCAAGGCACAGAAACAGATCTTGTTaGTTCCAGCTGCAGCCCATG +
Preference number: 4 (lower is better)
Translates to: GAQAAERLLSQATGRARHRNRSC*FQLQPM
Trigger: CATGGGCTGCAGCTGGAAGCAACAAGATCTGTTTCT...GTGCCTTGCCCTCCCTGTTGCTTGGCTGAGCAGTCTCTCTGCAGCCTGTGCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR CCA 90 bp AGGCAGAAATGGGCATGGGCAAGACTCCGCCTGCCTAGGAGTTCCAATGCCATCTATTCGAGCTCTGCCTaGCGCCGCTTCCAAAACTCC +
Preference number: 4 (lower is better)
Translates to: RQKWAWARLRLPRSSNAIYSSSA*RRFQNS
Trigger: GGAGTTTTGGAAGCGGCGCCAGGCAGAGCTCGAATA...GATGGCATTGGAACTCCTAGGCAGGCGGAGTCTTGCCCATGCCCATTTCTGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR TCA 90 bp CCCAGCTGTGATTACAAACGAGTTAGCAGGCAACGAATGGAGCTGGGCAAGGAATGGCTATTCCTTGCATaGTGGGCTGCCACGCGCCGA +
Preference number: 4 (lower is better)
Translates to: PSCDYKRVSRQRMELGKEWLFLA*WAATRR
Trigger: TCGGCGCGTGGCAGCCCATCATGCAAGGAATAGCCA...TTCCTTGCCCAGCTCCATTCGTTGCCTGCTAACTCGTTTGTAATCACAGCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR GCA 90 bp CCGGGTCACACTCTTCGCTTCTGTATTTGCCCAGCAAGTACACTGGGTCCCCGGGCAGTGAAGAACTCCTaGTCTGGCTTGATGACACTC +
Preference number: 4 (lower is better)
Translates to: PGHTLRFCICPASTLGPRAVKNS*SGLMTL
Trigger: GAGTGTCATCAAGCCAGAGCAGGAGTTCTTCACTGC...CCGGGGACCCAGTGTACTTGCTGGGCAAATACAGAAGCGAAGAGTGTGACCCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
CDS-3UTR CCA 90 bp CAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTCTGTTCTCCCTGGGCCTCATACTCTaGCCGGGCCTGTTCCTCTTG +
Preference number: 4 (lower is better)
Translates to: QDLQVGGFRLCLISFLFSLGLIL*PGLFLL
Trigger: CAAGAGGAACAGGCCCGGCCAGAGTATGAGGCCCAG...GGAGAACAGAAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
3UTR CAA 72 bp CCACCAGCCTTTTTCAGCGAGCAAGGCAGAAGGCGCTaGGTGATTGGTAGTGCCACCCTTCTGCATCTGCTA +
Preference number: 4 (lower is better)
Translates to: PPAFFSEQGRRR*VIGSATLLHLL
Trigger: TAGCAGATGCAGAAGGGTGGCACTACCAATCACCAAGCGCCTTCTGCCTTGCTCGCTGAAAAAGGCTGGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR TCA 90 bp AGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTCTGCTGATTCTCCAGTaGTCCAAAGGTGGGGCAGAC +
Preference number: 4 (lower is better)
Translates to: REHVQDLQVGGFRLCLISLLILQ*SKGGAD
Trigger: GTCTGCCCCACCTTTGGATCACTGGAGAATCAGCAG...ACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR TCA 90 bp TGTTTATACTCTTGTGGGTGCCCAGGTGGGTTTCGGAAGTCACGGTACCTGCACCTGCTGATTCTCCAGTaGTCCAAAGGTGGGGCAGAC +
Preference number: 4 (lower is better)
Translates to: CLYSCGCPGGFRKSRYLHLLILQ*SKGGAD
Trigger: GTCTGCCCCACCTTTGGATCACTGGAGAATCAGCAG...GTGCAGGTACCGTGACTTCCGAAACCCACCTGGGCACCCACAAGAGTATAAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
CDS-3UTR TCA 90 bp CTCTGGAAAAGAGGTAACAGAGGGAGCAGGGCACTCCAGGGCAATCTGGGGGTAGTCCTGAAGTCCTGCTaGTTCTCCAGTGATCCAAAG +
Preference number: 4 (lower is better)
Translates to: LWKRGNRGSRALQGNLGVVLKSC*FSSDPK
Trigger: CTTTGGATCACTGGAGAATCAGCAGGACTTCAGGAC...TACCCCCAGATTGCCCTGGAGTGCCCTGCTCCCTCTGTTACCTCTTTTCCAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR TCA 90 bp CTCTGGAAAAGAGGTAACAGAGGGAGCAGGGCACTCCAGGGCAATCTGGGGGTATATATACTCCGAGGGTaGGCCCATTCTCTGTACAGG +
Preference number: 4 (lower is better)
Translates to: LWKRGNRGSRALQGNLGVYILRG*AHSLYR
Trigger: CCTGTACAGAGAATGGGCTCACCCTCGGAGTATATA...TACCCCCAGATTGCCCTGGAGTGCCCTGCTCCCTCTGTTACCTCTTTTCCAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR TCA 90 bp AGGCAGAAATGGGCATGGGCAAGACTCCGCCTGCCTAGGAGTTCCAATGCCATCCAGAGAGAGTGTTGTTaGTGTAGCCGTCCATGGTGT +
Preference number: 4 (lower is better)
Translates to: RQKWAWARLRLPRSSNAIQRECC*CSRPWC
Trigger: ACACCATGGACGGCTACATCAACAACACTCTCTCTG...GATGGCATTGGAACTCCTAGGCAGGCGGAGTCTTGCCCATGCCCATTTCTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR GCA 90 bp CCGGGTCACACTCTTCGCTTCTGTATTTGCCCAGCAAGTACACTGGGTCCCCGGAGAAACAGATCTTGTTaGTTCCAGCTGCAGCCCATG +
Preference number: 4 (lower is better)
Translates to: PGHTLRFCICPASTLGPRRNRSC*FQLQPM
Trigger: CATGGGCTGCAGCTGGAAGCAACAAGATCTGTTTCT...CCGGGGACCCAGTGTACTTGCTGGGCAAATACAGAAGCGAAGAGTGTGACCCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
CDS-3UTR CCA 90 bp AGGCAGAAATGGGCATGGGCAAGACTCCGCCTGCCTAGGAGTTCCAATGCCATCTCCAGCTGCAGCCCATaGCAGATAAGGTTAGATTCG +
Preference number: 4 (lower is better)
Translates to: RQKWAWARLRLPRSSNAISSCSP*QIRLDS
Trigger: CGAATCTAACCTTATCTGCCATGGGCTGCAGCTGGA...GATGGCATTGGAACTCCTAGGCAGGCGGAGTCTTGCCCATGCCCATTTCTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CCA 90 bp AGGACAAGGGAGGAGGGGAAATACTCCCACACTGACCCCCTGGGCTACTCAAAAGGATGTGGCCATCTGTaGGGTCAGGTACTTCTGGAT +
Preference number: 4 (lower is better)
Translates to: RTREEGKYSHTDPLGYSKGCGHL*GQVLLD
Trigger: ATCCAGAAGTACCTGACCCCACAGATGGCCACATCC...TTTTGAGTAGCCCAGGGGGTCAGTGTGGGAGTATTTCCCCTCCTCCCTTGTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
3UTR CAA 72 bp AGAAGGCAGTCTCTAAAACCGCTCACTTTCCTTGGCTaGGTTCCTAGGCACCGAGGCATTCCACACCCATCC +
Preference number: 4 (lower is better)
Translates to: RRQSLKPLTFLG*VPRHRGIPHPS
Trigger: GGATGGGTGTGGAATGCCTCGGTGCCTAGGAACCAAGCCAAGGAAAGTGAGCGGTTTTAGAGACTGCCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR TCA 90 bp CAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTCTGTTCTCCCTGCTGATTCTCCAGTaGTCCAAAGGTGGGGCAGAC +
Preference number: 4 (lower is better)
Translates to: QDLQVGGFRLCLISFLFSLLILQ*SKGGAD
Trigger: GTCTGCCCCACCTTTGGATCACTGGAGAATCAGCAG...GGAGAACAGAAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR TCA 90 bp GTTCTCATGAAGTGGATGGGCTTCCCGGCCCATGATGCTGAGGACGAGACAGTTGTCCTGAAGTCCTGCTaGTTCTCCAGTGATCCAAAG +
Preference number: 4 (lower is better)
Translates to: VLMKWMGFPAHDAEDETVVLKSC*FSSDPK
Trigger: CTTTGGATCACTGGAGAATCAGCAGGACTTCAGGAC...AACTGTCTCGTCCTCAGCATCATGGGCCGGGAAGCCCATCCACTTCATGAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR TCA 90 bp GTTCTCATGAAGTGGATGGGCTTCCCGGCCCATGATGCTGAGGACGAGACAGTTCAAACTCTGGAGTCCTaGAGTCCTGCTGATTCTCCA +
Preference number: 4 (lower is better)
Translates to: VLMKWMGFPAHDAEDETVQTLES*SPADSP
Trigger: TGGAGAATCAGCAGGACTTCAGGACTCCAGAGTTTG...AACTGTCTCGTCCTCAGCATCATGGGCCGGGAAGCCCATCCACTTCATGAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR GCA 90 bp CCGGGTCACACTCTTCGCTTCTGTATTTGCCCAGCAAGTACACTGGGTCCCCGGGATCACAGACCTCTTTaGTCCAAGTGCAGTTATCCT +
Preference number: 4 (lower is better)
Translates to: PGHTLRFCICPASTLGPRDHRPL*SKCSYP
Trigger: AGGATAACTGCACTTGGAGCAAAGAGGTCTGTGATC...CCGGGGACCCAGTGTACTTGCTGGGCAAATACAGAAGCGAAGAGTGTGACCCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
CDS-3UTR GCA 90 bp GTTCTCATGAAGTGGATGGGCTTCCCGGCCCATGATGCTGAGGACGAGACAGTTTTCATATTCGAGCTCTaGCTGGCGCCGCTTCCAAAA +
Preference number: 4 (lower is better)
Translates to: VLMKWMGFPAHDAEDETVFIFEL*LAPLPK
Trigger: TTTTGGAAGCGGCGCCAGGCAGAGCTCGAATATGAA...AACTGTCTCGTCCTCAGCATCATGGGCCGGGAAGCCCATCCACTTCATGAGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR CCA 90 bp AGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTATCCCAGCTTGCCCATaGGCTGCAGATGGTAATCCT +
Preference number: 4 (lower is better)
Translates to: REHVQDLQVGGFRLCLISIPACP*AADGNP
Trigger: AGGATTACCATCTGCAGCCCATGGGCAAGCTGGGAT...ACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR CCA 90 bp GTTCTCATGAAGTGGATGGGCTTCCCGGCCCATGATGCTGAGGACGAGACAGTTGTGTTTATACTCTTGTaGGTGCCCAGGTGGGTTTCG +
Preference number: 4 (lower is better)
Translates to: VLMKWMGFPAHDAEDETVVFILL*VPRWVS
Trigger: CGAAACCCACCTGGGCACCCACAAGAGTATAAACAC...AACTGTCTCGTCCTCAGCATCATGGGCCGGGAAGCCCATCCACTTCATGAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR TCA 90 bp GCTTCCCGGCCCATGATGCTGAGGACGAGACAGTTACAATCATTTGATTATCATGCCTCTGGCCATCGGTaGAAAAGAGGGAGTCGGGCT +
Preference number: 4 (lower is better)
Translates to: ASRPMMLRTRQLQSFDYHASGHR*KRGSRA
Trigger: AGCCCGACTCCCTCTTTTTCACCGATGGCCAGAGGC...ATGATAATCAAATGATTGTAACTGTCTCGTCCTCAGCATCATGGGCCGGGAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR GCA 90 bp CCCAGCTGTGATTACAAACGAGTTAGCAGGCAACGAATGGAGCTGGGCAAGGAACTTGTTGCTTCCAGCTaGAGCCCATGGCAGATAAGG +
Preference number: 4 (lower is better)
Translates to: PSCDYKRVSRQRMELGKELVASS*SPWQIR
Trigger: CCTTATCTGCCATGGGCTGCAGCTGGAAGCAACAAG...TTCCTTGCCCAGCTCCATTCGTTGCCTGCTAACTCGTTTGTAATCACAGCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR GCA 90 bp AGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTGCAGTGAAGAACTCCTaGTCTGGCTTGATGACACTC +
Preference number: 4 (lower is better)
Translates to: REHVQDLQVGGFRLCLISAVKNS*SGLMTL
Trigger: GAGTGTCATCAAGCCAGAGCAGGAGTTCTTCACTGC...ACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR GCA 90 bp CAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTCTGTTCTCCAGAACAATCCCAGCTTaGCCATGGGCTGCAGATGGT +
Preference number: 4 (lower is better)
Translates to: QDLQVGGFRLCLISFLFSRTIPA*PWAADG
Trigger: ACCATCTGCAGCCCATGGGCAAGCTGGGATTGTTCT...GGAGAACAGAAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR GCA 90 bp CAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTCTGTTCTCCTCGAACTCAGAAATCTaGCTGCCTCTGGCTCCCAAG +
Preference number: 4 (lower is better)
Translates to: QDLQVGGFRLCLISFLFSSNSEI*LPLAPK
Trigger: CTTGGGAGCCAGAGGCAGGCAGATTTCTGAGTTCGA...GGAGAACAGAAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
CDS-3UTR CCA 90 bp CAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTCTGTTCTCCGGATGTGGCCATCTGTaGGGTCAGGTACTTCTGGAT +
Preference number: 4 (lower is better)
Translates to: QDLQVGGFRLCLISFLFSGCGHL*GQVLLD
Trigger: ATCCAGAAGTACCTGACCCCACAGATGGCCACATCC...GGAGAACAGAAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR CCA 90 bp AGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTCCAGAAAAGGCCTCCTaGAGTCAGGAACATCACCAA +
Preference number: 4 (lower is better)
Translates to: REHVQDLQVGGFRLCLISPEKAS*SQEHHQ
Trigger: TTGGTGATGTTCCTGACTCCAGGAGGCCTTTTCTGG...ACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227791.2
CDS-3UTR TCA 90 bp AGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTCTGGTGGCAGGGTTaGAGAAGGAATCTCTATCGA +
Preference number: 4 (lower is better)
Translates to: REHVQDLQVGGFRLCLISFWWQG*RRNLYR
Trigger: TCGATAGAGATTCCTTCTTCAACCCTGCCACCAGAA...ACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR TCA 90 bp AGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTCCACGAATTTGCCCTTaGAGAATGCGATGTAGAAGC +
Preference number: 4 (lower is better)
Translates to: REHVQDLQVGGFRLCLISPRICP*RMRCRS
Trigger: GCTTCTACATCGCATTCTTCAAGGGCAAATTCGTGG...ACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR TCA 90 bp AGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTTGGTCAGGTCTTTaGGGTGACTCTCGTGAAGCA +
Preference number: 4 (lower is better)
Translates to: REHVQDLQVGGFRLCLISFWSGL*GDSREA
Trigger: TGCTTCACGAGAGTCACCTCAAAGACCTGACCAAAA...ACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR CCA 90 bp AGGTCCTCCCTTCTTCACCCAGCACTGACCTCTGTGATCAGTCAAGGGTGCGAGAAATTCTTCAAACTCTaGAGTCCTGAAGTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: RSSLLHPALTSVISQGCEKFFKL*SPEVLL
Trigger: CAGCAGGACTTCAGGACTCCAGAGTTTGAAGAATTT...CTCGCACCCTTGACTGATCACAGAGGTCAGTGCTGGGTGAAGAAGGGAGGACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR CCA 90 bp AGGCAGAAATGGGCATGGGCAAGACTCCGCCTGCCTAGGAGTTCCAATGCCATCAAATTCTTCAAACTCTaGAGTCCTGAAGTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: RQKWAWARLRLPRSSNAIKFFKL*SPEVLL
Trigger: CAGCAGGACTTCAGGACTCCAGAGTTTGAAGAATTT...GATGGCATTGGAACTCCTAGGCAGGCGGAGTCTTGCCCATGCCCATTTCTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CCA 90 bp AGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTCTTTGTAGACCAGGCTaGCCTCGAACTCAGAAATCT +
Preference number: 4 (lower is better)
Translates to: REHVQDLQVGGFRLCLISLCRPG*PRTQKS
Trigger: AGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAG...ACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
3UTR CAA 72 bp GTCAACATTGGTCAGACCCAGAGCATGCTGGGAGTATaGCTAGAGAGCAAATGTCACCGTGGAGTAACAGGG +
Preference number: 4 (lower is better)
Translates to: VNIGQTQSMLGV*LESKCHRGVTG
Trigger: CCCTGTTACTCCACGGTGACATTTGCTCTCTAGCAATACTCCCAGCATGCTCTGGGTCTGACCAATGTTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR TCA 90 bp CAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTCTGTTCTCCTTCTGGTGGCAGGGTTaGAGAAGGAATCTCTATCGA +
Preference number: 4 (lower is better)
Translates to: QDLQVGGFRLCLISFLFSFWWQG*RRNLYR
Trigger: TCGATAGAGATTCCTTCTTCAACCCTGCCACCAGAA...GGAGAACAGAAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR TCA 90 bp GAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTTATATACTCCGAGGGTaGGCCCATTCTCTGTACAGG +
Preference number: 4 (lower is better)
Translates to: EHVQDLQVGGFRLCLISFYILRG*AHSLYR
Trigger: CCTGTACAGAGAATGGGCTCACCCTCGGAGTATATA...AAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR TCA 90 bp AGGCAGAAATGGGCATGGGCAAGACTCCGCCTGCCTAGGAGTTCCAATGCCATCTGCGATGTAGAAGCATaGGGAGTAATAGTTGACAAA +
Preference number: 4 (lower is better)
Translates to: RQKWAWARLRLPRSSNAICDVEA*GVIVDK
Trigger: TTTGTCAACTATTACTCCTCATGCTTCTACATCGCA...GATGGCATTGGAACTCCTAGGCAGGCGGAGTCTTGCCCATGCCCATTTCTGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR TCA 90 bp TTTTATCTCAGCACAGATAGACACTGTATGGCGGGCTCTGGACTCCCAGGACAACAGAGAGAGTGTTGTTaGTGTAGCCGTCCATGGTGT +
Preference number: 4 (lower is better)
Translates to: FYLSTDRHCMAGSGLPGQQRECC*CSRPWC
Trigger: ACACCATGGACGGCTACATCAACAACACTCTCTCTG...TTGTCCTGGGAGTCCAGAGCCCGCCATACAGTGTCTATCTGTGCTGAGATAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR GCA 90 bp CAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTCTGTTCTCCAGAAACAGATCTTGTTaGTTCCAGCTGCAGCCCATG +
Preference number: 4 (lower is better)
Translates to: QDLQVGGFRLCLISFLFSRNRSC*FQLQPM
Trigger: CATGGGCTGCAGCTGGAAGCAACAAGATCTGTTTCT...GGAGAACAGAAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR GCA 90 bp CCAATTTATCAAAAGAGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGAGGATGGCTATTCCTTaGATGATGGGCTGCCACGCG +
Preference number: 4 (lower is better)
Translates to: PIYQKREHVQDLQVGGFRRMAIP*MMGCHA
Trigger: CGCGTGGCAGCCCATCATGCAAGGAATAGCCATCCT...CCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCTCTTTTGATAAATTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR GCA 90 bp CGGCAATCACGTGCCAATAGTAGATGTTGTGTTTATACTCTTGTGGGTGCCCAGACTCAGAAATCTGCCTaGCTCTGGCTCCCAAGTGCT +
Preference number: 4 (lower is better)
Translates to: RQSRANSRCCVYTLVGAQTQKSA*LWLPSA
Trigger: AGCACTTGGGAGCCAGAGGCAGGCAGATTTCTGAGT...CTGGGCACCCACAAGAGTATAAACACAACATCTACTATTGGCACGTGATTGCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
CDS-3UTR CCA 90 bp TTTTATCTCAGCACAGATAGACACTGTATGGCGGGCTCTGGACTCCCAGGACAACCAGTGATCCAAAGGTaGGGCAGACAATTGTCTGGT +
Preference number: 4 (lower is better)
Translates to: FYLSTDRHCMAGSGLPGQPVIQR*GRQLSG
Trigger: ACCAGACAATTGTCTGCCCCACCTTTGGATCACTGG...TTGTCCTGGGAGTCCAGAGCCCGCCATACAGTGTCTATCTGTGCTGAGATAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR CCA 90 bp CCAATTTATCAAAAGAGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGTATTCGAGCTCTGCCTaGCGCCGCTTCCAAAACTCC +
Preference number: 4 (lower is better)
Translates to: PIYQKREHVQDLQVGGFRYSSSA*RRFQNS
Trigger: GGAGTTTTGGAAGCGGCGCCAGGCAGAGCTCGAATA...CCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCTCTTTTGATAAATTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR TCA 90 bp AGTCAACATTGGTCAGACCCAGAGCATGCTGGGAGTATTGCTAGAGAGCAAATGCAAACTCTGGAGTCCTaGAGTCCTGCTGATTCTCCA +
Preference number: 4 (lower is better)
Translates to: SQHWSDPEHAGSIAREQMQTLES*SPADSP
Trigger: TGGAGAATCAGCAGGACTTCAGGACTCCAGAGTTTG...CATTTGCTCTCTAGCAATACTCCCAGCATGCTCTGGGTCTGACCAATGTTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR TCA 90 bp CCCATGATGCTGAGGACGAGACAGTTACAATCATTTGATTATCATCTACCAAGAGCCTCTGGCCATCGGTaGAAAAGAGGGAGTCGGGCT +
Preference number: 4 (lower is better)
Translates to: PMMLRTRQLQSFDYHLPRASGHR*KRGSRA
Trigger: AGCCCGACTCCCTCTTTTTCACCGATGGCCAGAGGC...TCTTGGTAGATGATAATCAAATGATTGTAACTGTCTCGTCCTCAGCATCATGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR TCA 90 bp AGGCAGAAATGGGCATGGGCAAGACTCCGCCTGCCTAGGAGTTCCAATGCCATCGTGACGAACCCAAACTaGATAATCATTTCAAGATAC +
Preference number: 4 (lower is better)
Translates to: RQKWAWARLRLPRSSNAIVTNPN*IIISRY
Trigger: GTATCTTGAAATGATTATTCAGTTTGGGTTCGTCAC...GATGGCATTGGAACTCCTAGGCAGGCGGAGTCTTGCCCATGCCCATTTCTGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR TCA 90 bp GAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTGCGGGGGATCATGTCTaGTGTGAAAGCAATGATCAT +
Preference number: 4 (lower is better)
Translates to: EHVQDLQVGGFRLCLISFAGDHV*CESNDH
Trigger: ATGATCATTGCTTTCACATCAGACATGATCCCCCGC...AAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR GCA 90 bp AGGCAGAAATGGGCATGGGCAAGACTCCGCCTGCCTAGGAGTTCCAATGCCATCAAGGTTAGATTCGTATaGTTGTCTTTTCCTCTTCTG +
Preference number: 4 (lower is better)
Translates to: RQKWAWARLRLPRSSNAIKVRFV*LSFPLL
Trigger: CAGAAGAGGAAAAGACAAGCATACGAATCTAACCTT...GATGGCATTGGAACTCCTAGGCAGGCGGAGTCTTGCCCATGCCCATTTCTGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CCA 90 bp AGTCAACATTGGTCAGACCCAGAGCATGCTGGGAGTATTGCTAGAGAGCAAATGTCCAGCTGCAGCCCATaGCAGATAAGGTTAGATTCG +
Preference number: 4 (lower is better)
Translates to: SQHWSDPEHAGSIAREQMSSCSP*QIRLDS
Trigger: CGAATCTAACCTTATCTGCCATGGGCTGCAGCTGGA...CATTTGCTCTCTAGCAATACTCCCAGCATGCTCTGGGTCTGACCAATGTTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR TCA 90 bp CCAATTTATCAAAAGAGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGTATATACTCCGAGGGTaGGCCCATTCTCTGTACAGG +
Preference number: 4 (lower is better)
Translates to: PIYQKREHVQDLQVGGFRYILRG*AHSLYR
Trigger: CCTGTACAGAGAATGGGCTCACCCTCGGAGTATATA...CCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCTCTTTTGATAAATTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR TCA 90 bp AGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTGAATTGCGTAGGAAATaGAGAACTTCACAGAGTAGA +
Preference number: 4 (lower is better)
Translates to: REHVQDLQVGGFRLCLISELRRK*RTSQSR
Trigger: TCTACTCTGTGAAGTTCTTCATTTCCTACGCAATTC...ACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR TCA 90 bp CCTGATCAGTTTTCTGTTCTCCAGTTTCCACACTGCTTGCTGAAACTGGAAGATGATGGTAGAGGAGTATaGGGAGCCAGAAAAGGCCTC +
Preference number: 4 (lower is better)
Translates to: PDQFSVLQFPHCLLKLEDDGRGV*GARKGL
Trigger: GAGGCCTTTTCTGGCTCCTCATACTCCTCTACCATC...ATCTTCCAGTTTCAGCAAGCAGTGTGGAAACTGGAGAACAGAAAACTGATCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227791.2
CDS-3UTR GCA 90 bp TCAAAGGGCAACAATCTTGGTAGACTTGTCTCCAGCCCAGCTGTGATTACAAACTTCATATTCGAGCTCTaGCTGGCGCCGCTTCCAAAA +
Preference number: 4 (lower is better)
Translates to: SKGNNLGRLVSSPAVITNFIFEL*LAPLPK
Trigger: TTTTGGAAGCGGCGCCAGGCAGAGCTCGAATATGAA...GTTTGTAATCACAGCTGGGCTGGAGACAAGTCTACCAAGATTGTTGCCCTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR GCA 90 bp CCAATTTATCAAAAGAGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGTTCATATTCGAGCTCTaGCTGGCGCCGCTTCCAAAA +
Preference number: 4 (lower is better)
Translates to: PIYQKREHVQDLQVGGFRFIFEL*LAPLPK
Trigger: TTTTGGAAGCGGCGCCAGGCAGAGCTCGAATATGAA...CCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCTCTTTTGATAAATTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR GCA 90 bp AGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTGGACACATCTGGAATTaGGTAGGAAATGAAGAACTT +
Preference number: 4 (lower is better)
Translates to: REHVQDLQVGGFRLCLISGHIWN*VGNEEL
Trigger: AAGTTCTTCATTTCCTACGCAATTCCAGATGTGTCC...ACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR CCA 90 bp CCAATTTATCAAAAGAGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCCAGTGATCCAAAGGTaGGGCAGACAATTGTCTGGT +
Preference number: 4 (lower is better)
Translates to: PIYQKREHVQDLQVGGFRPVIQR*GRQLSG
Trigger: ACCAGACAATTGTCTGCCCCACCTTTGGATCACTGG...CCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCTCTTTTGATAAATTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CCA 90 bp CCAATTTATCAAAAGAGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGTCCAGCTGCAGCCCATaGCAGATAAGGTTAGATTCG +
Preference number: 4 (lower is better)
Translates to: PIYQKREHVQDLQVGGFRSSCSP*QIRLDS
Trigger: CGAATCTAACCTTATCTGCCATGGGCTGCAGCTGGA...CCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCTCTTTTGATAAATTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CCA 90 bp CCTGATCAGTTTTCTGTTCTCCAGTTTCCACACTGCTTGCTGAAACTGGAAGATATCCGTCTGGGTCCTTaGGAGCTCGAAGTTGGTGAT +
Preference number: 4 (lower is better)
Translates to: PDQFSVLQFPHCLLKLEDIRLGP*ELEVGD
Trigger: ATCACCAACTTCGAGCTCCCAAGGACCCAGACGGAT...ATCTTCCAGTTTCAGCAAGCAGTGTGGAAACTGGAGAACAGAAAACTGATCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR CCA 90 bp CCTGATGGCTTGAGAGGAGGCTTGGGGCTCAAATTCAACCCAGGGTTTCCTTCCACAAGAACATCTTCATaGTCAGGCTGTTCTCATAAT +
Preference number: 4 (lower is better)
Translates to: PDGLRGGLGLKFNPGFPSTRTSS*SGCSHN
Trigger: ATTATGAGAACAGCCTGACCATGAAGATGTTCTTGT...GGAAGGAAACCCTGGGTTGAATTTGAGCCCCAAGCCTCCTCTCAAGCCATCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR CCA 90 bp CCAATTTATCAAAAGAGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGGTGTTTATACTCTTGTaGGTGCCCAGGTGGGTTTCG +
Preference number: 4 (lower is better)
Translates to: PIYQKREHVQDLQVGGFRVFILL*VPRWVS
Trigger: CGAAACCCACCTGGGCACCCACAAGAGTATAAACAC...CCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCTCTTTTGATAAATTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR TCA 90 bp CCTGATCAGTTTTCTGTTCTCCAGTTTCCACACTGCTTGCTGAAACTGGAAGATCAAACTCTGGAGTCCTaGAGTCCTGCTGATTCTCCA +
Preference number: 4 (lower is better)
Translates to: PDQFSVLQFPHCLLKLEDQTLES*SPADSP
Trigger: TGGAGAATCAGCAGGACTTCAGGACTCCAGAGTTTG...ATCTTCCAGTTTCAGCAAGCAGTGTGGAAACTGGAGAACAGAAAACTGATCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR TCA 90 bp CAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTCTGTTCTCCTGCGATGTAGAAGCATaGGGAGTAATAGTTGACAAA +
Preference number: 4 (lower is better)
Translates to: QDLQVGGFRLCLISFLFSCDVEA*GVIVDK
Trigger: TTTGTCAACTATTACTCCTCATGCTTCTACATCGCA...GGAGAACAGAAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR TCA 90 bp CCCAGCTGTGATTACAAACGAGTTAGCAGGCAACGAATGGAGCTGGGCAAGGAAGAATTGCGTAGGAAATaGAGAACTTCACAGAGTAGA +
Preference number: 4 (lower is better)
Translates to: PSCDYKRVSRQRMELGKEELRRK*RTSQSR
Trigger: TCTACTCTGTGAAGTTCTTCATTTCCTACGCAATTC...TTCCTTGCCCAGCTCCATTCGTTGCCTGCTAACTCGTTTGTAATCACAGCTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR GCA 90 bp CAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTCTGTTCTCCATAAGATCCAAGGGCTaGTTCTTGTATATACTCCGA +
Preference number: 4 (lower is better)
Translates to: QDLQVGGFRLCLISFLFSIRSKG*FLYILR
Trigger: TCGGAGTATATACAAGAAGCAGCCCTTGGATCTTAT...GGAGAACAGAAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CCA 90 bp AGTCAACATTGGTCAGACCCAGAGCATGCTGGGAGTATTGCTAGAGAGCAAATGGGGCAGACAATTGTCTaGTCAAAGTTTTCCAGCACA +
Preference number: 4 (lower is better)
Translates to: SQHWSDPEHAGSIAREQMGQTIV*SKFSST
Trigger: TGTGCTGGAAAACTTTGACCAGACAATTGTCTGCCC...CATTTGCTCTCTAGCAATACTCCCAGCATGCTCTGGGTCTGACCAATGTTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR CCA 90 bp AGTCAACATTGGTCAGACCCAGAGCATGCTGGGAGTATTGCTAGAGAGCAAATGACGTTGTTCATCACTTaGTATTTGACCCGAGAGAGG +
Preference number: 4 (lower is better)
Translates to: SQHWSDPEHAGSIAREQMTLFIT*YLTRER
Trigger: CCTCTCTCGGGTCAAATACCAAGTGATGAACAACGT...CATTTGCTCTCTAGCAATACTCCCAGCATGCTCTGGGTCTGACCAATGTTGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR CCA 90 bp CCAATTTATCAAAAGAGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGGGGCAGACAATTGTCTaGTCAAAGTTTTCCAGCACC +
Preference number: 4 (lower is better)
Translates to: PIYQKREHVQDLQVGGFRGQTIV*SKFSST
Trigger: GGTGCTGGAAAACTTTGACCAGACAATTGTCTGCCC...CCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCTCTTTTGATAAATTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000227791.2
3UTR CAA 72 bp AATCACGTGCCAATAGTAGATGTTGTGTTTATACTCTaGTGGGTGCCCAGGTGGGTTTCGGAAGTCACGGTA +
Preference number: 4 (lower is better)
Translates to: NHVPIVDVVFIL*WVPRWVSEVTV
Trigger: TACCGTGACTTCCGAAACCCACCTGGGCACCCACAAGAGTATAAACACAACATCTACTATTGGCACGTGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
CDS-3UTR TCA 90 bp CCTGATCAGTTTTCTGTTCTCCAGTTTCCACACTGCTTGCTGAAACTGGAAGATTTCTGGTGGCAGGGTTaGAGAAGGAATCTCTATCGA +
Preference number: 4 (lower is better)
Translates to: PDQFSVLQFPHCLLKLEDFWWQG*RRNLYR
Trigger: TCGATAGAGATTCCTTCTTCAACCCTGCCACCAGAA...ATCTTCCAGTTTCAGCAAGCAGTGTGGAAACTGGAGAACAGAAAACTGATCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CCA 90 bp CCAATTTATCAAAAGAGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGACGTTGTTCATCACTTaGTATTTGACCCGAGAGAGG +
Preference number: 4 (lower is better)
Translates to: PIYQKREHVQDLQVGGFRTLFIT*YLTRER
Trigger: CCTCTCTCGGGTCAAATACCAAGTGATGAACAACGT...CCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCTCTTTTGATAAATTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR TCA 90 bp TTTTATCTCAGCACAGATAGACACTGTATGGCGGGCTCTGGACTCCCAGGACAAGTGACGAACCCAAACTaGATAATCATTTCAAGATAC +
Preference number: 4 (lower is better)
Translates to: FYLSTDRHCMAGSGLPGQVTNPN*IIISRY
Trigger: GTATCTTGAAATGATTATTCAGTTTGGGTTCGTCAC...TTGTCCTGGGAGTCCAGAGCCCGCCATACAGTGTCTATCTGTGCTGAGATAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR GCA 90 bp CAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTCTGTTCTCCTATTGTTCTCCTTTTTaGTCTCATCTTCATACACGA +
Preference number: 4 (lower is better)
Translates to: QDLQVGGFRLCLISFLFSYCSPF*SHLHTR
Trigger: TCGTGTATGAAGATGAGAGCAAAAAGGAGAACAATA...GGAGAACAGAAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR GCA 90 bp CCTGATCAGTTTTCTGTTCTCCAGTTTCCACACTGCTTGCTGAAACTGGAAGATGATCACAGACCTCTTTaGTCCAAGTGCAGTTATCCT +
Preference number: 4 (lower is better)
Translates to: PDQFSVLQFPHCLLKLEDDHRPL*SKCSYP
Trigger: AGGATAACTGCACTTGGAGCAAAGAGGTCTGTGATC...ATCTTCCAGTTTCAGCAAGCAGTGTGGAAACTGGAGAACAGAAAACTGATCAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR GCA 90 bp TTTGTGTCTACAAAGAAAGGAAGGGAAAATTTCCTCTTTCTATGGTATGGAGTGAGGATGGCTATTCCTTaGATGATGGGCTGCCACGCG +
Preference number: 4 (lower is better)
Translates to: FVSTKKGRENFLFLWYGVRMAIP*MMGCHA
Trigger: CGCGTGGCAGCCCATCATGCAAGGAATAGCCATCCT...CACTCCATACCATAGAAAGAGGAAATTTTCCCTTCCTTTCTTTGTAGACACAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR CCA 90 bp TCTTCATGCCAATCTAAGACGAGTATTTCTTGGAGGTGGAAATACAGGCTGAAACCAGTGATCCAAAGGTaGGGCAGACAATTGTCTGGT +
Preference number: 4 (lower is better)
Translates to: SSCQSKTSISWRWKYRLKPVIQR*GRQLSG
Trigger: ACCAGACAATTGTCTGCCCCACCTTTGGATCACTGG...TTTCAGCCTGTATTTCCACCTCCAAGAAATACTCGTCTTAGATTGGCATGAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR CCA 90 bp GAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTGATTTTGGACACATCTaGAATTGCGTAGGAAATGAA +
Preference number: 4 (lower is better)
Translates to: EHVQDLQVGGFRLCLISFDFGHI*NCVGNE
Trigger: TTCATTTCCTACGCAATTCCAGATGTGTCCAAAATC...AAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
3UTR CAA 72 bp AGCAACTTCTGCGTGAGGTATTTCTCCCTCTTGATCTaGCTTTTCGTGATTTTGGACACATCTGGAATTGCG +
Preference number: 4 (lower is better)
Translates to: SNFCVRYFSLLI*LFVILDTSGIA
Trigger: CGCAATTCCAGATGTGTCCAAAATCACGAAAAGCAAGATCAAGAGGGAGAAATACCTCACGCAGAAGTTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
CDS-3UTR TCA 90 bp CCCATGATGCTGAGGACGAGACAGTTACAATCATTTGATTATCATCTACCAAGAGCGGGGGATCATGTCTaGTGTGAAAGCAATGATCAT +
Preference number: 4 (lower is better)
Translates to: PMMLRTRQLQSFDYHLPRAGDHV*CESNDH
Trigger: ATGATCATTGCTTTCACATCAGACATGATCCCCCGC...TCTTGGTAGATGATAATCAAATGATTGTAACTGTCTCGTCCTCAGCATCATGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR TCA 90 bp CCCATGATGCTGAGGACGAGACAGTTACAATCATTTGATTATCATCTACCAAGATTTTGGTCAGGTCTTTaGGGTGACTCTCGTGAAGCA +
Preference number: 4 (lower is better)
Translates to: PMMLRTRQLQSFDYHLPRFWSGL*GDSREA
Trigger: TGCTTCACGAGAGTCACCTCAAAGACCTGACCAAAA...TCTTGGTAGATGATAATCAAATGATTGTAACTGTCTCGTCCTCAGCATCATGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR GCA 90 bp AGTCAACATTGGTCAGACCCAGAGCATGCTGGGAGTATTGCTAGAGAGCAAATGAAGGTTAGATTCGTATaGTTGTCTTTTCCTCTTCTG +
Preference number: 4 (lower is better)
Translates to: SQHWSDPEHAGSIAREQMKVRFV*LSFPLL
Trigger: CAGAAGAGGAAAAGACAAGCATACGAATCTAACCTT...CATTTGCTCTCTAGCAATACTCCCAGCATGCTCTGGGTCTGACCAATGTTGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR GCA 90 bp CCAATTTATCAAAAGAGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGATAAGATCCAAGGGCTaGTTCTTGTATATACTCCGA +
Preference number: 4 (lower is better)
Translates to: PIYQKREHVQDLQVGGFRIRSKG*FLYILR
Trigger: TCGGAGTATATACAAGAAGCAGCCCTTGGATCTTAT...CCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCTCTTTTGATAAATTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR GCA 90 bp CAGCTTGGCGGCAATCACGTGCCAATAGTAGATGTTGTGTTTATACTCTTGTGGATAAGATCCAAGGGCTaGTTCTTGTATATACTCCGA +
Preference number: 4 (lower is better)
Translates to: QLGGNHVPIVDVVFILLWIRSKG*FLYILR
Trigger: TCGGAGTATATACAAGAAGCAGCCCTTGGATCTTAT...CCACAAGAGTATAAACACAACATCTACTATTGGCACGTGATTGCCGCCAAGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
CDS-3UTR GCA 90 bp TTTGTGTCTACAAAGAAAGGAAGGGAAAATTTCCTCTTTCTATGGTATGGAGTGAGAACAATCCCAGCTTaGCCATGGGCTGCAGATGGT +
Preference number: 4 (lower is better)
Translates to: FVSTKKGRENFLFLWYGVRTIPA*PWAADG
Trigger: ACCATCTGCAGCCCATGGGCAAGCTGGGATTGTTCT...CACTCCATACCATAGAAAGAGGAAATTTTCCCTTCCTTTCTTTGTAGACACAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR GCA 90 bp CCAATTTATCAAAAGAGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGGGACACATCTGGAATTaGGTAGGAAATGAAGAACTT +
Preference number: 4 (lower is better)
Translates to: PIYQKREHVQDLQVGGFRGHIWN*VGNEEL
Trigger: AAGTTCTTCATTTCCTACGCAATTCCAGATGTGTCC...CCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCTCTTTTGATAAATTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR CCA 90 bp TTTGTGTCTACAAAGAAAGGAAGGGAAAATTTCCTCTTTCTATGGTATGGAGTGATCCCAGCTTGCCCATaGGCTGCAGATGGTAATCCT +
Preference number: 4 (lower is better)
Translates to: FVSTKKGRENFLFLWYGVIPACP*AADGNP
Trigger: AGGATTACCATCTGCAGCCCATGGGCAAGCTGGGAT...CACTCCATACCATAGAAAGAGGAAATTTTCCCTTCCTTTCTTTGTAGACACAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR GCA 90 bp TCTTCATGCCAATCTAAGACGAGTATTTCTTGGAGGTGGAAATACAGGCTGAAAGATCACAGACCTCTTTaGTCCAAGTGCAGTTATCCT +
Preference number: 4 (lower is better)
Translates to: SSCQSKTSISWRWKYRLKDHRPL*SKCSYP
Trigger: AGGATAACTGCACTTGGAGCAAAGAGGTCTGTGATC...TTTCAGCCTGTATTTCCACCTCCAAGAAATACTCGTCTTAGATTGGCATGAAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR CCA 90 bp CCCATGATGCTGAGGACGAGACAGTTACAATCATTTGATTATCATCTACCAAGAGGGCAGACAATTGTCTaGTCAAAGTTTTCCAGCACA +
Preference number: 4 (lower is better)
Translates to: PMMLRTRQLQSFDYHLPRGQTIV*SKFSST
Trigger: TGTGCTGGAAAACTTTGACCAGACAATTGTCTGCCC...TCTTGGTAGATGATAATCAAATGATTGTAACTGTCTCGTCCTCAGCATCATGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR CCA 90 bp CCAATTTATCAAAAGAGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGGATTTTGGACACATCTaGAATTGCGTAGGAAATGAA +
Preference number: 4 (lower is better)
Translates to: PIYQKREHVQDLQVGGFRDFGHI*NCVGNE
Trigger: TTCATTTCCTACGCAATTCCAGATGTGTCCAAAATC...CCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCTCTTTTGATAAATTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
3UTR CAA 72 bp GACCCCCTGGGCTACTCAAAAGCCCAGAACACTGCTTaGATTAATCATGTTGATTCTCAATTCTCTAGTAAA +
Preference number: 4 (lower is better)
Translates to: DPLGYSKAQNTA*INHVDSQFSSK
Trigger: TTTACTAGAGAATTGAGAATCAACATGATTAATCAAAGCAGTGTTCTGGGCTTTTGAGTAGCCCAGGGGGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR CCA 90 bp TATCATCTACCAAGAAGAGATAAATTAACCGTTCAGATCAACAAGGGCTGCTACACGTTGTTCATCACTTaGTATTTGACCCGAGAGAGG +
Preference number: 4 (lower is better)
Translates to: YHLPRRDKLTVQINKGCYTLFIT*YLTRER
Trigger: CCTCTCTCGGGTCAAATACCAAGTGATGAACAACGT...GTAGCAGCCCTTGTTGATCTGAACGGTTAATTTATCTCTTCTTGGTAGATGATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR CCA 90 bp CCTGATCAGTTTTCTGTTCTCCAGTTTCCACACTGCTTGCTGAAACTGGAAGATACAAGAACATCTTCATaGTCAGGCTGTTCTCATAAT +
Preference number: 4 (lower is better)
Translates to: PDQFSVLQFPHCLLKLEDTRTSS*SGCSHN
Trigger: ATTATGAGAACAGCCTGACCATGAAGATGTTCTTGT...ATCTTCCAGTTTCAGCAAGCAGTGTGGAAACTGGAGAACAGAAAACTGATCAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR TCA 90 bp TTTCTTTGTGTCTACAAAGAAAGGAAGGGAAAATTTCCTCTTTCTATGGTATGGCCACGAATTTGCCCTTaGAGAATGCGATGTAGAAGC +
Preference number: 4 (lower is better)
Translates to: FLCVYKERKGKFPLSMVWPRICP*RMRCRS
Trigger: GCTTCTACATCGCATTCTTCAAGGGCAAATTCGTGG...CCATACCATAGAAAGAGGAAATTTTCCCTTCCTTTCTTTGTAGACACAAAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR GCA 90 bp CCTGATCAGTTTTCTGTTCTCCAGTTTCCACACTGCTTGCTGAAACTGGAAGATTATTGTTCTCCTTTTTaGTCTCATCTTCATACACGA +
Preference number: 4 (lower is better)
Translates to: PDQFSVLQFPHCLLKLEDYCSPF*SHLHTR
Trigger: TCGTGTATGAAGATGAGAGCAAAAAGGAGAACAATA...ATCTTCCAGTTTCAGCAAGCAGTGTGGAAACTGGAGAACAGAAAACTGATCAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CCA 90 bp TATCATCTACCAAGAAGAGATAAATTAACCGTTCAGATCAACAAGGGCTGCTACAAATTCTTCAAACTCTaGAGTCCTGAAGTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: YHLPRRDKLTVQINKGCYKFFKL*SPEVLL
Trigger: CAGCAGGACTTCAGGACTCCAGAGTTTGAAGAATTT...GTAGCAGCCCTTGTTGATCTGAACGGTTAATTTATCTCTTCTTGGTAGATGATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS CCA 90 bp CTCCAGAACGGACACAGCCTGTCACACTGGGGGCACATCAGGATCTaGCCACCGATGTCAGGATCACAGACCTCTTTGCTCCAAGTGCAG +
Preference number: 5 (lower is better)
Translates to: LQNGHSLSHWGHIRI*PPMSGSQTSLLQVQ
Trigger: CTGCACTTGGAGCAAAGAGGTCTGTGATCCTGACATCGGTGGCCAGATCCTGATGTGCCCCCAGTGTGACAGGCTGTGTCCGTTCTGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp GGCCAGGATGGCTATTCCTTGCATGATGGGCTGCCACGCGCCGATATCCTGGGCCTTCTGGTGGCAGGGTaGAAGAAGGAATCTCTATCG +
Preference number: 5 (lower is better)
Translates to: GQDGYSLHDGLPRADILGLLVAG*KKESLS
Trigger: CGATAGAGATTCCTTCTTCAACCCTGCCACCAGAAG...GCCCAGGATATCGGCGCGTGGCAGCCCATCATGCAAGGAATAGCCATCCTGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
CDS CCA 90 bp TCACAGGTGATATTCAGCCTCCAGAACGGACACAGCCTGTCACACTaGGGGCACATCAGGATCTGGCCACCGATGTCAGGATCACAGACC +
Preference number: 5 (lower is better)
Translates to: SQVIFSLQNGHSLSH*GHIRIWPPMSGSQT
Trigger: GGTCTGTGATCCTGACATCGGTGGCCAGATCCTGATGTGCCCCCAGTGTGACAGGCTGTGTCCGTTCTGGAGGCTGAATATCACCTGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp AGGCAGAAATGGGCATGGGCAAGACTCCGCCTGCCTAGGAGTTCCAATGCCATCACCTTGGTGAACCAGTaGAGGTTGCCAAAGGGCGAG +
Preference number: 5 (lower is better)
Translates to: RQKWAWARLRLPRSSNAITLVNQ*RLPKGE
Trigger: CTCGCCCTTTGGCAACCTCAACTGGTTCACCAAGGT...GATGGCATTGGAACTCCTAGGCAGGCGGAGTCTTGCCCATGCCCATTTCTGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp CCTGATGGCTTGAGAGGAGGCTTGGGGCTCAAATTCAACCCAGGGTTTCCTTCCCAGGATGGCTATTCCTaGCATGATGGGCTGCCACGC +
Preference number: 5 (lower is better)
Translates to: PDGLRGGLGLKFNPGFPSQDGYS*HDGLPR
Trigger: GCGTGGCAGCCCATCATGCAAGGAATAGCCATCCTG...GGAAGGAAACCCTGGGTTGAATTTGAGCCCCAAGCCTCCTCTCAAGCCATCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR CAA 90 bp GGAGCACAGGCTGCAGAGAGACTGCTCAGCCAAGCAACAGGGAGGGCAAGGCACAACGTTGTTCATCACTaGGTATTTGACCCGAGAGAG +
Preference number: 5 (lower is better)
Translates to: GAQAAERLLSQATGRARHNVVHH*VFDPRE
Trigger: CTCTCTCGGGTCAAATACCAAGTGATGAACAACGTT...GTGCCTTGCCCTCCCTGTTGCTTGGCTGAGCAGTCTCTCTGCAGCCTGTGCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR CAA 90 bp GGAGCACAGGCTGCAGAGAGACTGCTCAGCCAAGCAACAGGGAGGGCAAGGCACTGGGAGCAAGACTTCTaGTATGTTGTTCCAGATTGC +
Preference number: 5 (lower is better)
Translates to: GAQAAERLLSQATGRARHWEQDF*YVVPDC
Trigger: GCAATCTGGAACAACATACAAGAAGTCTTGCTCCCA...GTGCCTTGCCCTCCCTGTTGCTTGGCTGAGCAGTCTCTCTGCAGCCTGTGCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR CAA 90 bp ATCATGGCGTTGGTCACCACGGCCAGGATGGCTATTCCTTGCATGATGGGCTGCGGCTTTAGCGGGAGTTaGATGTGCATGATCTCAGCA +
Preference number: 5 (lower is better)
Translates to: IMALVTTARMAIPCMMGCGFSGS*MCMISA
Trigger: TGCTGAGATCATGCACATCAAACTCCCGCTAAAGCC...GCAGCCCATCATGCAAGGAATAGCCATCCTGGCCGTGGTGACCAACGCCATGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
CDS-3UTR CAA 90 bp AGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTCACCCGGAGGACCTaGGTGAACCAGTTGAGGTTG +
Preference number: 5 (lower is better)
Translates to: REHVQDLQVGGFRLCLISFTRRT*VNQLRL
Trigger: CAACCTCAACTGGTTCACCAAGGTCCTCCGGGTGAA...ACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp GGGCAAGGAGTGGCACTTGGTTTCAGCTGTGCAATGAGAGCATCCCTCAGGGAGCTTCTGGTGGCAGGGTaGAAGAAGGAATCTCTATCG +
Preference number: 5 (lower is better)
Translates to: GQGVALGFSCAMRASLRELLVAG*KKESLS
Trigger: CGATAGAGATTCCTTCTTCAACCCTGCCACCAGAAG...CTCCCTGAGGGATGCTCTCATTGCACAGCTGAAACCAAGTGCCACTCCTTGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR CAA 90 bp AGGCAGAAATGGGCATGGGCAAGACTCCGCCTGCCTAGGAGTTCCAATGCCATCCTTCTGGTGGCAGGGTaGAAGAAGGAATCTCTATCG +
Preference number: 5 (lower is better)
Translates to: RQKWAWARLRLPRSSNAILLVAG*KKESLS
Trigger: CGATAGAGATTCCTTCTTCAACCCTGCCACCAGAAG...GATGGCATTGGAACTCCTAGGCAGGCGGAGTCTTGCCCATGCCCATTTCTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp CAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTCTGTTCTCCCAGGATGGCTATTCCTaGCATGATGGGCTGCCACGC +
Preference number: 5 (lower is better)
Translates to: QDLQVGGFRLCLISFLFSQDGYS*HDGLPR
Trigger: GCGTGGCAGCCCATCATGCAAGGAATAGCCATCCTG...GGAGAACAGAAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp AGGCAGAAATGGGCATGGGCAAGACTCCGCCTGCCTAGGAGTTCCAATGCCATCGTTGTGTTTATACTCTaGTGGGTGCCCAGGTGGGTT +
Preference number: 5 (lower is better)
Translates to: RQKWAWARLRLPRSSNAIVVFIL*WVPRWV
Trigger: AACCCACCTGGGCACCCACAAGAGTATAAACACAAC...GATGGCATTGGAACTCCTAGGCAGGCGGAGTCTTGCCCATGCCCATTTCTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS GCA 90 bp CTGATCAAGATATCCATAGAGGAAGCAGGCCACGCCCACCACAGCTaGGAGAAGGAGCATCTGCGTGTAATAGCCCAGCCAAGCAAAGTA +
Preference number: 5 (lower is better)
Translates to: LIKISIEEAGHAHHS*EKEHLRVIAQPSKV
Trigger: TACTTTGCTTGGCTGGGCTATTACACGCAGATGCTCCTTCTCGCAGCTGTGGTGGGCGTGGCCTGCTTCCTCTATGGATATCTTGATCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS CCA 90 bp ATTCATCCGGCTCTTCTCAAAAGGGGCAGTGAAGAACTCCTGCTCTaGCTTGATGACACTCTCGTTCACCCGGAGGACCTTGGTGAACCA +
Preference number: 5 (lower is better)
Translates to: IHPALLKRGSEELLL*LDDTLVHPEDLGEP
Trigger: TGGTTCACCAAGGTCCTCCGGGTGAACGAGAGTGTCATCAAGCCAGAGCAGGAGTTCTTCACTGCCCCTTTTGAGAAGAGCCGGATGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071874.8
ENSMUST00000226793.2
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp CCCAGCTGTGATTACAAACGAGTTAGCAGGCAACGAATGGAGCTGGGCAAGGAAACCTTGGTGAACCAGTaGAGGTTGCCAAAGGGCGAG +
Preference number: 5 (lower is better)
Translates to: PSCDYKRVSRQRMELGKETLVNQ*RLPKGE
Trigger: CTCGCCCTTTGGCAACCTCAACTGGTTCACCAAGGT...TTCCTTGCCCAGCTCCATTCGTTGCCTGCTAACTCGTTTGTAATCACAGCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS GCA 90 bp AAATCATTCATCCGGCTCTTCTCAAAAGGGGCAGTGAAGAACTCCTaGTCTGGCTTGATGACACTCTCGTTCACCCGGAGGACCTTGGTG +
Preference number: 5 (lower is better)
Translates to: KSFIRLFSKGAVKNS*SGLMTLSFTRRTLV
Trigger: CACCAAGGTCCTCCGGGTGAACGAGAGTGTCATCAAGCCAGAGCAGGAGTTCTTCACTGCCCCTTTTGAGAAGAGCCGGATGAATGATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071874.8
ENSMUST00000226793.2
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS GCA 90 bp GGATCTGGCCACCGATGTCAGGATCACAGACCTCTTTGCTCCAAGTaGAGTTATCCTGATCAAGATATCCATAGAGGAAGCAGGCCACGC +
Preference number: 5 (lower is better)
Translates to: GSGHRCQDHRPLCSK*SYPDQDIHRGSRPR
Trigger: GCGTGGCCTGCTTCCTCTATGGATATCTTGATCAGGATAACTGCACTTGGAGCAAAGAGGTCTGTGATCCTGACATCGGTGGCCAGATCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp AGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTCTTCGCTTCTGTATTaGCCCAGCAAGTACACTGGG +
Preference number: 5 (lower is better)
Translates to: REHVQDLQVGGFRLCLISSSLLY*PSKYTG
Trigger: CCCAGTGTACTTGCTGGGCAAATACAGAAGCGAAGA...ACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp AGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTGTTGTGTTTATACTCTaGTGGGTGCCCAGGTGGGTT +
Preference number: 5 (lower is better)
Translates to: REHVQDLQVGGFRLCLISVVFIL*WVPRWV
Trigger: AACCCACCTGGGCACCCACAAGAGTATAAACACAAC...ACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp ATGTCTGATGTGAAAGCAATGATCATGGCGTTGGTCACCACGGCCAGGATGGCTCATCAGAAACAGATCTaGTTGCTTCCAGCTGCAGCC +
Preference number: 5 (lower is better)
Translates to: MSDVKAMIMALVTTARMAHQKQI*LLPAAA
Trigger: GGCTGCAGCTGGAAGCAACAAGATCTGTTTCTGATG...AGCCATCCTGGCCGTGGTGACCAACGCCATGATCATTGCTTTCACATCAGACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
CDS-3UTR CAA 90 bp AGTCAACATTGGTCAGACCCAGAGCATGCTGGGAGTATTGCTAGAGAGCAAATGACCTTGGTGAACCAGTaGAGGTTGCCAAAGGGCGAG +
Preference number: 5 (lower is better)
Translates to: SQHWSDPEHAGSIAREQMTLVNQ*RLPKGE
Trigger: CTCGCCCTTTGGCAACCTCAACTGGTTCACCAAGGT...CATTTGCTCTCTAGCAATACTCCCAGCATGCTCTGGGTCTGACCAATGTTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR CAA 90 bp GTTCTCATGAAGTGGATGGGCTTCCCGGCCCATGATGCTGAGGACGAGACAGTTAACGTTGTTCATCACTaGGTATTTGACCCGAGAGAG +
Preference number: 5 (lower is better)
Translates to: VLMKWMGFPAHDAEDETVNVVHH*VFDPRE
Trigger: CTCTCTCGGGTCAAATACCAAGTGATGAACAACGTT...AACTGTCTCGTCCTCAGCATCATGGGCCGGGAAGCCCATCCACTTCATGAGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS GCA 90 bp GGCACATCAGGATCTGGCCACCGATGTCAGGATCACAGACCTCTTTaGTCCAAGTGCAGTTATCCTGATCAAGATATCCATAGAGGAAGC +
Preference number: 5 (lower is better)
Translates to: GTSGSGHRCQDHRPL*SKCSYPDQDIHRGS
Trigger: GCTTCCTCTATGGATATCTTGATCAGGATAACTGCACTTGGAGCAAAGAGGTCTGTGATCCTGACATCGGTGGCCAGATCCTGATGTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp CCGGGTCACACTCTTCGCTTCTGTATTTGCCCAGCAAGTACACTGGGTCCCCGGTTTACGAACACAAGCTaGTCATCAGAAACAGATCTT +
Preference number: 5 (lower is better)
Translates to: PGHTLRFCICPASTLGPRFTNTS*SSETDL
Trigger: AAGATCTGTTTCTGATGACAAGCTTGTGTTCGTAAA...CCGGGGACCCAGTGTACTTGCTGGGCAAATACAGAAGCGAAGAGTGTGACCCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
CDS-3UTR CAA 90 bp TTTTATCTCAGCACAGATAGACACTGTATGGCGGGCTCTGGACTCCCAGGACAAGGCTTTAGCGGGAGTTaGATGTGCATGATCTCAGCA +
Preference number: 5 (lower is better)
Translates to: FYLSTDRHCMAGSGLPGQGFSGS*MCMISA
Trigger: TGCTGAGATCATGCACATCAAACTCCCGCTAAAGCC...TTGTCCTGGGAGTCCAGAGCCCGCCATACAGTGTCTATCTGTGCTGAGATAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR CAA 90 bp GCTTCCCGGCCCATGATGCTGAGGACGAGACAGTTACAATCATTTGATTATCATTTCACCCGGAGGACCTaGGTGAACCAGTTGAGGTTG +
Preference number: 5 (lower is better)
Translates to: ASRPMMLRTRQLQSFDYHFTRRT*VNQLRL
Trigger: CAACCTCAACTGGTTCACCAAGGTCCTCCGGGTGAA...ATGATAATCAAATGATTGTAACTGTCTCGTCCTCAGCATCATGGGCCGGGAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR CAA 90 bp CGGCAATCACGTGCCAATAGTAGATGTTGTGTTTATACTCTTGTGGGTGCCCAGAACTCCTGCTCTGGCTaGATGACACTCTCGTTCACC +
Preference number: 5 (lower is better)
Translates to: RQSRANSRCCVYTLVGAQNSCSG*MTLSFT
Trigger: GGTGAACGAGAGTGTCATCAAGCCAGAGCAGGAGTT...CTGGGCACCCACAAGAGTATAAACACAACATCTACTATTGGCACGTGATTGCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
CDS-3UTR CAA 90 bp CCAATTTATCAAAAGAGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGAACTCCTGCTCTGGCTaGATGACACTCTCGTTCACC +
Preference number: 5 (lower is better)
Translates to: PIYQKREHVQDLQVGGFRNSCSG*MTLSFT
Trigger: GGTGAACGAGAGTGTCATCAAGCCAGAGCAGGAGTT...CCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCTCTTTTGATAAATTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp AGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTCATCACTTGGTATTaGACCCGAGAGAGGATGAAA +
Preference number: 5 (lower is better)
Translates to: REHVQDLQVGGFRLCLISFITWY*TRERMK
Trigger: TTTCATCCTCTCTCGGGTCAAATACCAAGTGATGAA...ACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS CCA 90 bp TTTTTGCTCTCATCTTCATACACGAGGATGAAGTCGATTCGCCTCTaGCCATCGGTGAAAAAGAGGGAGTCGGGCTTCCCGTTAAATTCT +
Preference number: 5 (lower is better)
Translates to: FLLSSSYTRMKSIRL*PSVKKRESGFPLNS
Trigger: AGAATTTAACGGGAAGCCCGACTCCCTCTTTTTCACCGATGGCCAGAGGCGAATCGACTTCATCCTCGTGTATGAAGATGAGAGCAAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071874.8
ENSMUST00000226793.2
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp CCAATTTATCAAAAGAGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGGGCTTTAGCGGGAGTTaGATGTGCATGATCTCAGCA +
Preference number: 5 (lower is better)
Translates to: PIYQKREHVQDLQVGGFRGFSGS*MCMISA
Trigger: TGCTGAGATCATGCACATCAAACTCCCGCTAAAGCC...CCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCTCTTTTGATAAATTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp GCTTCCCGGCCCATGATGCTGAGGACGAGACAGTTACAATCATTTGATTATCATTCTTCGCTTCTGTATTaGCCCAGCAAGTACACTGGG +
Preference number: 5 (lower is better)
Translates to: ASRPMMLRTRQLQSFDYHSSLLY*PSKYTG
Trigger: CCCAGTGTACTTGCTGGGCAAATACAGAAGCGAAGA...ATGATAATCAAATGATTGTAACTGTCTCGTCCTCAGCATCATGGGCCGGGAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR CAA 90 bp CAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTCTGTTCTCCTCTTTGTCTGTGTTCTaGAAGTCCGTGATGTTGAAG +
Preference number: 5 (lower is better)
Translates to: QDLQVGGFRLCLISFLFSSLSVF*KSVMLK
Trigger: CTTCAACATCACGGACTTCAAGAACACAGACAAAGA...GGAGAACAGAAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp CAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTCTGTTCTCCTTCTCCCTCTTGATCTaGCTTTTCGTGATTTTGGAC +
Preference number: 5 (lower is better)
Translates to: QDLQVGGFRLCLISFLFSFSLLI*LFVILD
Trigger: GTCCAAAATCACGAAAAGCAAGATCAAGAGGGAGAA...GGAGAACAGAAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp TCTTCATGCCAATCTAAGACGAGTATTTCTTGGAGGTGGAAATACAGGCTGAAATTCACCCGGAGGACCTaGGTGAACCAGTTGAGGTTG +
Preference number: 5 (lower is better)
Translates to: SSCQSKTSISWRWKYRLKFTRRT*VNQLRL
Trigger: CAACCTCAACTGGTTCACCAAGGTCCTCCGGGTGAA...TTTCAGCCTGTATTTCCACCTCCAAGAAATACTCGTCTTAGATTGGCATGAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR CAA 90 bp CAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTCTGTTCTCCATGTATGGGTTTTCTTaGTCTGTGTTCTTGAAGTCC +
Preference number: 5 (lower is better)
Translates to: QDLQVGGFRLCLISFLFSMYGFS*SVFLKS
Trigger: GGACTTCAAGAACACAGACAAAGAAAACCCATACAT...GGAGAACAGAAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp AGTCAACATTGGTCAGACCCAGAGCATGCTGGGAGTATTGCTAGAGAGCAAATGTTCATCACTTGGTATTaGACCCGAGAGAGGATGAAA +
Preference number: 5 (lower is better)
Translates to: SQHWSDPEHAGSIAREQMFITWY*TRERMK
Trigger: TTTCATCCTCTCTCGGGTCAAATACCAAGTGATGAA...CATTTGCTCTCTAGCAATACTCCCAGCATGCTCTGGGTCTGACCAATGTTGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR CAA 90 bp CCAATTTATCAAAAGAGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGAACGTTGTTCATCACTaGGTATTTGACCCGAGAGAG +
Preference number: 5 (lower is better)
Translates to: PIYQKREHVQDLQVGGFRNVVHH*VFDPRE
Trigger: CTCTCTCGGGTCAAATACCAAGTGATGAACAACGTT...CCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCTCTTTTGATAAATTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp TTTTATCTCAGCACAGATAGACACTGTATGGCGGGCTCTGGACTCCCAGGACAAATGTATGGGTTTTCTTaGTCTGTGTTCTTGAAGTCC +
Preference number: 5 (lower is better)
Translates to: FYLSTDRHCMAGSGLPGQMYGFS*SVFLKS
Trigger: GGACTTCAAGAACACAGACAAAGAAAACCCATACAT...TTGTCCTGGGAGTCCAGAGCCCGCCATACAGTGTCTATCTGTGCTGAGATAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR CAA 90 bp GAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTAGGTATTTCTCCCTCTaGATCTTGCTTTTCGTGATT +
Preference number: 5 (lower is better)
Translates to: EHVQDLQVGGFRLCLISFRYFSL*ILLFVI
Trigger: AATCACGAAAAGCAAGATCAAGAGGGAGAAATACCT...AAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS GCA 90 bp ACGAACACAAGCTTGTCATCAGAAACAGATCTTGTTGCTTCCAGCTaGAGCCCATGGCAGATAAGGTTAGATTCGTATGCTTGTCTTTTC +
Preference number: 5 (lower is better)
Translates to: TNTSLSSETDLVASS*SPWQIRLDSYACLF
Trigger: GAAAAGACAAGCATACGAATCTAACCTTATCTGCCATGGGCTGCAGCTGGAAGCAACAAGATCTGTTTCTGATGACAAGCTTGTGTTCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071874.8
ENSMUST00000226793.2
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS CCA 90 bp AGCTTGTCATCAGAAACAGATCTTGTTGCTTCCAGCTGCAGCCCATaGCAGATAAGGTTAGATTCGTATGCTTGTCTTTTCCTCTTCTGT +
Preference number: 5 (lower is better)
Translates to: SLSSETDLVASSCSP*QIRLDSYACLFLFC
Trigger: ACAGAAGAGGAAAAGACAAGCATACGAATCTAACCTTATCTGCCATGGGCTGCAGCTGGAAGCAACAAGATCTGTTTCTGATGACAAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071874.8
ENSMUST00000226793.2
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp TTTTATCTCAGCACAGATAGACACTGTATGGCGGGCTCTGGACTCCCAGGACAATTATTGTTCTCCTTTTaGCTCTCATCTTCATACACG +
Preference number: 5 (lower is better)
Translates to: FYLSTDRHCMAGSGLPGQLLFSF*LSSSYT
Trigger: CGTGTATGAAGATGAGAGCAAAAAGGAGAACAATAA...TTGTCCTGGGAGTCCAGAGCCCGCCATACAGTGTCTATCTGTGCTGAGATAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR CAA 90 bp GAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGCTCTGCCTGATCAGTTTTTTATTGTTCTCCTTTTaGCTCTCATCTTCATACACG +
Preference number: 5 (lower is better)
Translates to: EHVQDLQVGGFRLCLISFLLFSF*LSSSYT
Trigger: CGTGTATGAAGATGAGAGCAAAAAGGAGAACAATAA...AAAACTGATCAGGCAGAGCCTAAAACCACCTACCTGGAGGTCCTGAACATGCTC
44% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp TCTTCATGCCAATCTAAGACGAGTATTTCTTGGAGGTGGAAATACAGGCTGAAACATCAGAAACAGATCTaGTTGCTTCCAGCTGCAGCC +
Preference number: 5 (lower is better)
Translates to: SSCQSKTSISWRWKYRLKHQKQI*LLPAAA
Trigger: GGCTGCAGCTGGAAGCAACAAGATCTGTTTCTGATG...TTTCAGCCTGTATTTCCACCTCCAAGAAATACTCGTCTTAGATTGGCATGAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR CAA 90 bp TCAAAGGGCAACAATCTTGGTAGACTTGTCTCCAGCCCAGCTGTGATTACAAACAAGACTTCTTGTATGTaGTTCCAGATTGCCTTTCCC +
Preference number: 5 (lower is better)
Translates to: SKGNNLGRLVSSPAVITNKTSCM*FQIAFP
Trigger: GGGAAAGGCAATCTGGAACAACATACAAGAAGTCTT...GTTTGTAATCACAGCTGGGCTGGAGACAAGTCTACCAAGATTGTTGCCCTTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR CAA 90 bp CCTGATCAGTTTTCTGTTCTCCAGTTTCCACACTGCTTGCTGAAACTGGAAGATTGGGAGCAAGACTTCTaGTATGTTGTTCCAGATTGC +
Preference number: 5 (lower is better)
Translates to: PDQFSVLQFPHCLLKLEDWEQDF*YVVPDC
Trigger: GCAATCTGGAACAACATACAAGAAGTCTTGCTCCCA...ATCTTCCAGTTTCAGCAAGCAGTGTGGAAACTGGAGAACAGAAAACTGATCAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp CCTGATCAGTTTTCTGTTCTCCAGTTTCCACACTGCTTGCTGAAACTGGAAGATAAGACTTCTTGTATGTaGTTCCAGATTGCCTTTCCC +
Preference number: 5 (lower is better)
Translates to: PDQFSVLQFPHCLLKLEDKTSCM*FQIAFP
Trigger: GGGAAAGGCAATCTGGAACAACATACAAGAAGTCTT...ATCTTCCAGTTTCAGCAAGCAGTGTGGAAACTGGAGAACAGAAAACTGATCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp CCTGATCAGTTTTCTGTTCTCCAGTTTCCACACTGCTTGCTGAAACTGGAAGATTCTTTGTCTGTGTTCTaGAAGTCCGTGATGTTGAAG +
Preference number: 5 (lower is better)
Translates to: PDQFSVLQFPHCLLKLEDSLSVF*KSVMLK
Trigger: CTTCAACATCACGGACTTCAAGAACACAGACAAAGA...ATCTTCCAGTTTCAGCAAGCAGTGTGGAAACTGGAGAACAGAAAACTGATCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp CCTGATCAGTTTTCTGTTCTCCAGTTTCCACACTGCTTGCTGAAACTGGAAGATTTCTCCCTCTTGATCTaGCTTTTCGTGATTTTGGAC +
Preference number: 5 (lower is better)
Translates to: PDQFSVLQFPHCLLKLEDFSLLI*LFVILD
Trigger: GTCCAAAATCACGAAAAGCAAGATCAAGAGGGAGAA...ATCTTCCAGTTTCAGCAAGCAGTGTGGAAACTGGAGAACAGAAAACTGATCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp CCAATTTATCAAAAGAGGGAGCATGTTCAGGACCTCCAGGTAGGTGGTTTTAGGTTATTGTTCTCCTTTTaGCTCTCATCTTCATACACG +
Preference number: 5 (lower is better)
Translates to: PIYQKREHVQDLQVGGFRLLFSF*LSSSYT
Trigger: CGTGTATGAAGATGAGAGCAAAAAGGAGAACAATAA...CCTAAAACCACCTACCTGGAGGTCCTGAACATGCTCCCTCTTTTGATAAATTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp TTTCTTTGTGTCTACAAAGAAAGGAAGGGAAAATTTCCTCTTTCTATGGTATGGAACTCCTGCTCTGGCTaGATGACACTCTCGTTCACC +
Preference number: 5 (lower is better)
Translates to: FLCVYKERKGKFPLSMVWNSCSG*MTLSFT
Trigger: GGTGAACGAGAGTGTCATCAAGCCAGAGCAGGAGTT...CCATACCATAGAAAGAGGAAATTTTCCCTTCCTTTCTTTGTAGACACAAAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071874.8
CDS-3UTR CAA 90 bp CCTGATCAGTTTTCTGTTCTCCAGTTTCCACACTGCTTGCTGAAACTGGAAGATAGGTATTTCTCCCTCTaGATCTTGCTTTTCGTGATT +
Preference number: 5 (lower is better)
Translates to: PDQFSVLQFPHCLLKLEDRYFSL*ILLFVI
Trigger: AATCACGAAAAGCAAGATCAAGAGGGAGAAATACCT...ATCTTCCAGTTTCAGCAAGCAGTGTGGAAACTGGAGAACAGAAAACTGATCAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp CCTGATCAGTTTTCTGTTCTCCAGTTTCCACACTGCTTGCTGAAACTGGAAGATTTTACGAACACAAGCTaGTCATCAGAAACAGATCTT +
Preference number: 5 (lower is better)
Translates to: PDQFSVLQFPHCLLKLEDFTNTS*SSETDL
Trigger: AAGATCTGTTTCTGATGACAAGCTTGTGTTCGTAAA...ATCTTCCAGTTTCAGCAAGCAGTGTGGAAACTGGAGAACAGAAAACTGATCAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS-3UTR CAA 90 bp TATCATCTACCAAGAAGAGATAAATTAACCGTTCAGATCAACAAGGGCTGCTACTTCATCACTTGGTATTaGACCCGAGAGAGGATGAAA +
Preference number: 5 (lower is better)
Translates to: YHLPRRDKLTVQINKGCYFITWY*TRERMK
Trigger: TTTCATCCTCTCTCGGGTCAAATACCAAGTGATGAA...GTAGCAGCCCTTGTTGATCTGAACGGTTAATTTATCTCTTCTTGGTAGATGATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS-3UTR CAA 90 bp CCCATGATGCTGAGGACGAGACAGTTACAATCATTTGATTATCATCTACCAAGATTTACGAACACAAGCTaGTCATCAGAAACAGATCTT +
Preference number: 5 (lower is better)
Translates to: PMMLRTRQLQSFDYHLPRFTNTS*SSETDL
Trigger: AAGATCTGTTTCTGATGACAAGCTTGTGTTCGTAAA...TCTTGGTAGATGATAATCAAATGATTGTAACTGTCTCGTCCTCAGCATCATGGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS CCA 72 bp GGACACAGCCTGTCACACTGGGGGCACATCAGGATCTaGCCACCGATGTCAGGATCACAGACCTCTTTGCTC +
Preference number: 6 (lower is better)
Translates to: GHSLSHWGHIRI*PPMSGSQTSLL
Trigger: GAGCAAAGAGGTCTGTGATCCTGACATCGGTGGCCAGATCCTGATGTGCCCCCAGTGTGACAGGCTGTGTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS CAA 72 bp TCGTTCACCCGGAGGACCTTGGTGAACCAGTTGAGGTaGCCAAAGGGCGAGCGCGTTTTCAGGTCGTTTGGC +
Preference number: 6 (lower is better)
Translates to: SFTRRTLVNQLR*PKGERVFRSFG
Trigger: GCCAAACGACCTGAAAACGCGCTCGCCCTTTGGCAACCTCAACTGGTTCACCAAGGTCCTCCGGGTGAACGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071874.8
ENSMUST00000226793.2
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS CAA 72 bp TCTGGCTTGATGACACTCTCGTTCACCCGGAGGACCTaGGTGAACCAGTTGAGGTTGCCAAAGGGCGAGCGC +
Preference number: 6 (lower is better)
Translates to: SGLMTLSFTRRT*VNQLRLPKGER
Trigger: GCGCTCGCCCTTTGGCAACCTCAACTGGTTCACCAAGGTCCTCCGGGTGAACGAGAGTGTCATCAAGCCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071874.8
ENSMUST00000226793.2
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS CAA 90 bp ATGACACTCTCGTTCACCCGGAGGACCTTGGTGAACCAGTTGAGGTaGCCAAAGGGCGAGCGCGTTTTCAGGTCGTTTGGCTTTAGCGGG +
Preference number: 6 (lower is better)
Translates to: MTLSFTRRTLVNQLR*PKGERVFRSFGFSG
Trigger: CCCGCTAAAGCCAAACGACCTGAAAACGCGCTCGCCCTTTGGCAACCTCAACTGGTTCACCAAGGTCCTCCGGGTGAACGAGAGTGTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071874.8
ENSMUST00000226793.2
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS CAA 90 bp AACTCCTGCTCTGGCTTGATGACACTCTCGTTCACCCGGAGGACCTaGGTGAACCAGTTGAGGTTGCCAAAGGGCGAGCGCGTTTTCAGG +
Preference number: 6 (lower is better)
Translates to: NSCSGLMTLSFTRRT*VNQLRLPKGERVFR
Trigger: CCTGAAAACGCGCTCGCCCTTTGGCAACCTCAACTGGTTCACCAAGGTCCTCCGGGTGAACGAGAGTGTCATCAAGCCAGAGCAGGAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071874.8
ENSMUST00000226793.2
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS GCA 72 bp ATATCCATAGAGGAAGCAGGCCACGCCCACCACAGCTaGGAGAAGGAGCATCTGCGTGTAATAGCCCAGCCA +
Preference number: 6 (lower is better)
Translates to: ISIEEAGHAHHS*EKEHLRVIAQP
Trigger: TGGCTGGGCTATTACACGCAGATGCTCCTTCTCGCAGCTGTGGTGGGCGTGGCCTGCTTCCTCTATGGATAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS GCA 72 bp CACTGGGCCTCATACTCTGGCCGGGCCTGTTCCTCTTaGTGTAGCTCAACGGTGTCCCATTCATATTCGAGC +
Preference number: 6 (lower is better)
Translates to: HWASYSGRACSS*CSSTVSHSYSS
Trigger: GCTCGAATATGAATGGGACACCGTTGAGCTACAGCAAGAGGAACAGGCCCGGCCAGAGTATGAGGCCCAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS GCA 72 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTaGCTCTGGCTCCCAAGTGCTGGGATTAAAGGCGTG +
Preference number: 6 (lower is better)
Translates to: CRPGWPRTQKSA*LWLPSAGIKGV
Trigger: CACGCCTTTAATCCCAGCACTTGGGAGCCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227151.2
CDS CCA 72 bp ATATTCAGCCTCCAGAACGGACACAGCCTGTCACACTaGGGGCACATCAGGATCTGGCCACCGATGTCAGGA +
Preference number: 6 (lower is better)
Translates to: IFSLQNGHSLSH*GHIRIWPPMSG
Trigger: TCCTGACATCGGTGGCCAGATCCTGATGTGCCCCCAGTGTGACAGGCTGTGTCCGTTCTGGAGGCTGAATAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS GCA 72 bp ATCCGGCTCTTCTCAAAAGGGGCAGTGAAGAACTCCTaGTCTGGCTTGATGACACTCTCGTTCACCCGGAGG +
Preference number: 6 (lower is better)
Translates to: IRLFSKGAVKNS*SGLMTLSFTRR
Trigger: CCTCCGGGTGAACGAGAGTGTCATCAAGCCAGAGCAGGAGTTCTTCACTGCCCCTTTTGAGAAGAGCCGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071874.8
ENSMUST00000226793.2
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS CAA 90 bp ATCCGGCTCTTCTCAAAAGGGGCAGTGAAGAACTCCTGCTCTGGCTaGATGACACTCTCGTTCACCCGGAGGACCTTGGTGAACCAGTTG +
Preference number: 6 (lower is better)
Translates to: IRLFSKGAVKNSCSG*MTLSFTRRTLVNQL
Trigger: CAACTGGTTCACCAAGGTCCTCCGGGTGAACGAGAGTGTCATCAAGCCAGAGCAGGAGTTCTTCACTGCCCCTTTTGAGAAGAGCCGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071874.8
ENSMUST00000226793.2
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS CCA 72 bp TCATCTTCATACACGAGGATGAAGTCGATTCGCCTCTaGCCATCGGTGAAAAAGAGGGAGTCGGGCTTCCCG +
Preference number: 6 (lower is better)
Translates to: SSSYTRMKSIRL*PSVKKRESGFP
Trigger: CGGGAAGCCCGACTCCCTCTTTTTCACCGATGGCCAGAGGCGAATCGACTTCATCCTCGTGTATGAAGATGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071874.8
ENSMUST00000226793.2
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS CCA 72 bp GCTCTTCTCAAAAGGGGCAGTGAAGAACTCCTGCTCTaGCTTGATGACACTCTCGTTCACCCGGAGGACCTT +
Preference number: 6 (lower is better)
Translates to: ALLKRGSEELLL*LDDTLVHPEDL
Trigger: AAGGTCCTCCGGGTGAACGAGAGTGTCATCAAGCCAGAGCAGGAGTTCTTCACTGCCCCTTTTGAGAAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071874.8
ENSMUST00000226793.2
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS CAA 72 bp TTCTCAAAAGGGGCAGTGAAGAACTCCTGCTCTGGCTaGATGACACTCTCGTTCACCCGGAGGACCTTGGTG +
Preference number: 6 (lower is better)
Translates to: FSKGAVKNSCSG*MTLSFTRRTLV
Trigger: CACCAAGGTCCTCCGGGTGAACGAGAGTGTCATCAAGCCAGAGCAGGAGTTCTTCACTGCCCCTTTTGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071874.8
ENSMUST00000226793.2
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS CAA 72 bp GCTGATTCTCCAGTGATCCAAAGGTGGGGCAGACAATaGTCTGGTCAAAGTTTTCCAGCACCAGACCGGATG +
Preference number: 6 (lower is better)
Translates to: ADSPVIQRWGRQ*SGQSFPAPDRM
Trigger: CATCCGGTCTGGTGCTGGAAAACTTTGACCAGACAATTGTCTGCCCCACCTTTGGATCACTGGAGAATCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227791.2
CDS CCA 72 bp ATGGTAGAGGAGTATGAGGAGCCAGAAAAGGCCTCCTaGAGTCAGGAACATCACCAATGTCTCCATCCTCAT +
Preference number: 6 (lower is better)
Translates to: MVEEYEEPEKAS*SQEHHQCLHPH
Trigger: ATGAGGATGGAGACATTGGTGATGTTCCTGACTCCAGGAGGCCTTTTCTGGCTCCTCATACTCCTCTACCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227791.2
CDS GCA 72 bp GGATCTGGCCACCGATGTCAGGATCACAGACCTCTTTaGTCCAAGTGCAGTTATCCTGATCAAGATATCCAT +
Preference number: 6 (lower is better)
Translates to: GSGHRCQDHRPL*SKCSYPDQDIH
Trigger: ATGGATATCTTGATCAGGATAACTGCACTTGGAGCAAAGAGGTCTGTGATCCTGACATCGGTGGCCAGATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS GCA 72 bp CACCGATGTCAGGATCACAGACCTCTTTGCTCCAAGTaGAGTTATCCTGATCAAGATATCCATAGAGGAAGC +
Preference number: 6 (lower is better)
Translates to: HRCQDHRPLCSK*SYPDQDIHRGS
Trigger: GCTTCCTCTATGGATATCTTGATCAGGATAACTGCACTTGGAGCAAAGAGGTCTGTGATCCTGACATCGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS CAA 72 bp GCTGATTCTCCAGTGATCCAAAGGTGGGGCAGACAATaGTCTGGTCAAAGTTTTCCAGCACAATGTCTCCAT +
Preference number: 6 (lower is better)
Translates to: ADSPVIQRWGRQ*SGQSFPAQCLH
Trigger: ATGGAGACATTGTGCTGGAAAACTTTGACCAGACAATTGTCTGCCCCACCTTTGGATCACTGGAGAATCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
CDS CAA 72 bp GCTGATTCTCCAGTGATCCAAAGGTGGGGCAGACAATaGTCTGGTCAAAGTTTTCCAGCACTGTGCAAATGT +
Preference number: 6 (lower is better)
Translates to: ADSPVIQRWGRQ*SGQSFPALCKC
Trigger: ACATTTGCACAGTGCTGGAAAACTTTGACCAGACAATTGTCTGCCCCACCTTTGGATCACTGGAGAATCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226793.2
CDS TCA 72 bp TTAAATTCTTCAAACTCTGGAGTCCTGAAGTCCTGCTaGTTCTCCAGTGATCCAAAGGTGGGGCAGACAATT +
Preference number: 6 (lower is better)
Translates to: LNSSNSGVLKSC*FSSDPKVGQTI
Trigger: AATTGTCTGCCCCACCTTTGGATCACTGGAGAATCAGCAGGACTTCAGGACTCCAGAGTTTGAAGAATTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071874.8
ENSMUST00000226793.2
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS CCA 72 bp TCAGAAACAGATCTTGTTGCTTCCAGCTGCAGCCCATaGCAGATAAGGTTAGATTCGTATGCTTGTCTTTTC +
Preference number: 6 (lower is better)
Translates to: SETDLVASSCSP*QIRLDSYACLF
Trigger: GAAAAGACAAGCATACGAATCTAACCTTATCTGCCATGGGCTGCAGCTGGAAGCAACAAGATCTGTTTCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071874.8
ENSMUST00000226793.2
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS CAA 90 bp TTCCTCTTCTGTTTCTCATTTGTCCCTTTCTTATTGTTCTCCTTTTaGCTCTCATCTTCATACACGAGGATGAAGTCGATTCGCCTCTGG +
Preference number: 6 (lower is better)
Translates to: FLFCFSFVPFLLFSF*LSSSYTRMKSIRLW
Trigger: CCAGAGGCGAATCGACTTCATCCTCGTGTATGAAGATGAGAGCAAAAAGGAGAACAATAAGAAAGGGACAAATGAGAAACAGAAGAGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071874.8
ENSMUST00000226793.2
ENSMUST00000227151.2
ENSMUST00000227791.2
CDS CAA 90 bp GCTGACCAGTCTATTAATCCCAAATTTGTTAACGTTGTTCATCACTaGGTATTTGACCCGAGAGAGGATGAAATAAACAATGCGGCTTCT +
Preference number: 6 (lower is better)
Translates to: ADQSINPKFVNVVHH*VFDPREDEINNAAS
Trigger: AGAAGCCGCATTGTTTATTTCATCCTCTCTCGGGTCAAATACCAAGTGATGAACAACGTTAACAAATTTGGGATTAATAGACTGGTCAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071874.8
ENSMUST00000227151.2
ENSMUST00000227791.2