Pregenerated sensors for AMY2A3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000093931Ensembl transcript IDs: ENSMUST00000179314.3
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | GCCAGAGGAGACAAGCCAGTAAAGAACATCACTCCATaGCCTTGCATCAGCTCCTGCTTCCTGACCTGCTTG | + |
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Preference number: 3 (lower is better) Translates to: ARGDKPVKNITP*PCISSCFLTCL Trigger: CAAGCAGGTCAGGAAGCAGGAGCTGATGCAAGGCCATGGAGTGATGTTCTTTACTGGCTTGTCTCCTCTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179314.3 |
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| 3UTR GCA 72 bp | ACTCCATGGCCTTGCATCAGCTCCTGCTTCCTGACCTaGTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAA | + |
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Preference number: 3 (lower is better) Translates to: TPWPCISSCFLT*LSSSPDFLGDE Trigger: TTCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAAGGCCATGGAGT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179314.3 |
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| 3UTR GCA 72 bp | GGAGACAAGCCAGTAAAGAACATCACTCCATGGCCTTaGATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCC | + |
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Preference number: 3 (lower is better) Translates to: GDKPVKNITPWP*ISSCFLTCLSS Trigger: GGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAAGGCCATGGAGTGATGTTCTTTACTGGCTTGTCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179314.3 |
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| 3UTR GCA 72 bp | GTAAAGAACATCACTCCATGGCCTTGCATCAGCTCCTaGTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTC | + |
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Preference number: 3 (lower is better) Translates to: VKNITPWPCISS*FLTCLSSSPDF Trigger: GAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAAGGCCATGGAGTGATGTTCTTTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179314.3 |
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| 3UTR GCA 72 bp | ATGAGCCAGCAACATAGCACAGCAGGTACAAGTGCATaGCTTCCAGGTCTCCATATCTTGACCCATAGCTCC | + |
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Preference number: 3 (lower is better) Translates to: MSQQHSTAGTSA*LPGLHILTHSS Trigger: GGAGCTATGGGTCAAGATATGGAGACCTGGAAGGCATGCACTTGTACCTGCTGTGCTATGTTGCTGGCTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179314.3 |
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| 3UTR CCA 72 bp | ACATTTCCTCAGAGCCTGTGGAACTTTCCCCAACAGTaGCCCCTTCACTCATCTCCATGTCCCATACCACAA | + |
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Preference number: 3 (lower is better) Translates to: TFPQSLWNFPQQ*PLHSSPCPIPQ Trigger: TTGTGGTATGGGACATGGAGATGAGTGAAGGGGCCACTGTTGGGGAAAGTTCCACAGGCTCTGAGGAAATGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179314.3 |
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| 3UTR GCA 72 bp | CAATTGGGGAAATGCCTCCATGAGATCCAGCTGCAATaGATTTTCTCAATTAGTGATCAAGCAGGGAGGTTC | + |
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Preference number: 3 (lower is better) Translates to: QLGKCLHEIQLQ*IFSISDQAGRF Trigger: GAACCTCCCTGCTTGATCACTAATTGAGAAAATGCATTGCAGCTGGATCTCATGGAGGCATTTCCCCAATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179314.3 |
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| 3UTR GCA 72 bp | TCCATGTCCCATACCACAACTCTGGCAGAAGCTCTTTaGTCTACCAGAGACAATGACTTATCCAGAATCCAA | + |
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Preference number: 3 (lower is better) Translates to: SMSHTTTLAEAL*STRDNDLSRIQ Trigger: TTGGATTCTGGATAAGTCATTGTCTCTGGTAGAGCAAAGAGCTTCTGCCAGAGTTGTGGTATGGGACATGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179314.3 |
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| 3UTR CCA 72 bp | ACAGGCTGGAGTTATCTCAGAGAAAAGAGATTCAATTaGGGAAATGCCTCCATGAGATCCAGCTGCAATGCA | + |
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Preference number: 3 (lower is better) Translates to: TGWSYLREKRFN*GNASMRSSCNA Trigger: TGCATTGCAGCTGGATCTCATGGAGGCATTTCCCCAATTGAATCTCTTTTCTCTGAGATAACTCCAGCCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179314.3 |
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| 3UTR GCA 72 bp | AGATTCAATTGGGGAAATGCCTCCATGAGATCCAGCTaGAATGCATTTTCTCAATTAGTGATCAAGCAGGGA | + |
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Preference number: 3 (lower is better) Translates to: RFNWGNASMRSS*NAFSQLVIKQG Trigger: TCCCTGCTTGATCACTAATTGAGAAAATGCATTGCAGCTGGATCTCATGGAGGCATTTCCCCAATTGAATCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179314.3 |
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| CDS TCA 72 bp | TGGTTGCTGTTATTATCCCACCAGTTTGAAAAAGGCTaGCCATTGACCACATTCCTGAAGGCAACCATGTTC | + |
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Preference number: 6 (lower is better) Translates to: WLLLLSHQFEKG*PLTTFLKATMF Trigger: GAACATGGTTGCCTTCAGGAATGTGGTCAATGGTCAGCCTTTTTCAAACTGGTGGGATAATAACAGCAACCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179314.3 |
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| CDS CCA 72 bp | ATTATCGTTAAAGTCCCAAGCAGAGTATGGAACTGCTaGGAATTCCCTGTTATTTGGATTGAGGTAACTTCC | + |
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Preference number: 6 (lower is better) Translates to: IIVKVPSRVWNC*EFPVIWIEVTS Trigger: GGAAGTTACCTCAATCCAAATAACAGGGAATTCCCAGCAGTTCCATACTCTGCTTGGGACTTTAACGATAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179314.3 |
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| CDS CCA 72 bp | ATTACATTTATTATCGTTAAAGTCCCAAGCAGAGTATaGAACTGCTGGGAATTCCCTGTTATTTGGATTGAG | + |
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Preference number: 6 (lower is better) Translates to: ITFIIVKVPSRV*NCWEFPVIWIE Trigger: CTCAATCCAAATAACAGGGAATTCCCAGCAGTTCCATACTCTGCTTGGGACTTTAACGATAATAAATGTAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179314.3 |
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