RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ABCC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023088

Ensembl transcript IDs: ENSMUST00000100167.10, ENSMUST00000130671.8, ENSMUST00000133454.8, ENSMUST00000134776.8, ENSMUST00000144676.3, ENSMUST00000147759.8, ENSMUST00000154748.8

Found 630 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TACTGTCATCCTCCGAGGCCAGGTCCTGCTCAGCGTTGGCATAGGTaGGCAGGAACTCAGCGAAGGCCCCATCCCGGTCTAGCAGCTCCT +
Preference number: 1 (lower is better)
Translates to: YCHPPRPGPAQRWHR*AGTQRRPHPGLAAP
Trigger: AGGAGCTGCTAGACCGGGATGGGGCCTTCGCTGAGTTCCTGCGCACCTATGCCAACGCTGAGCAGGACCTGGCCTCGGAGGATGACAGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CCA 90 bp CACCATTCTTACTGTCATCCTCCGAGGCCAGGTCCTGCTCAGCGTTaGCATAGGTGCGCAGGAACTCAGCGAAGGCCCCATCCCGGTCTA +
Preference number: 1 (lower is better)
Translates to: HHSYCHPPRPGPAQR*HRCAGTQRRPHPGL
Trigger: TAGACCGGGATGGGGCCTTCGCTGAGTTCCTGCGCACCTATGCCAACGCTGAGCAGGACCTGGCCTCGGAGGATGACAGTAAGAATGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CCA 90 bp CTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTaGATATGCCAGAGACCAGCTCACACCAAGCCAGCATCCTTGGCC +
Preference number: 1 (lower is better)
Translates to: LAHAWTLGSWPCSPH*ICQRPAHTKPASLA
Trigger: GGCCAAGGATGCTGGCTTGGTGTGAGCTGGTCTCTGGCATATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CCA 90 bp GGTGCAAGCGACGGGAGGCAAAGATGCCCCCGATGGACACAGCCATaGAGTAGCCAAATATTGCTGCACCTTGCAAGATGCCCAAGGCCC +
Preference number: 1 (lower is better)
Translates to: GASDGRQRCPRWTQP*SSQILLHLARCPRP
Trigger: GGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTGTCCATCGGGGGCATCTTTGCCTCCCGTCGCTTGCACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CCA 90 bp CGTAGGTTTCCAGGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTaGCCCTGCAGTCCTCATTGGATATGCCAGAGACCAGCTCACACC +
Preference number: 1 (lower is better)
Translates to: RRFPGLLAHAWTLGS*PCSPHWICQRPAHT
Trigger: GGTGTGAGCTGGTCTCTGGCATATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCTGGAAACCTACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 90 bp TCAGGCAGTAATCCCGGAACTCTACACGGCCTGAATGGGGCCAGGTaGTGGGTGGAGCTGTTTCCTGGATTTGCCAAGGAGCCTCCTTCT +
Preference number: 1 (lower is better)
Translates to: SGSNPGTLHGLNGAR*WVELFPGFAKEPPS
Trigger: AGAAGGAGGCTCCTTGGCAAATCCAGGAAACAGCTCCACCCAGCACCTGGCCCCATTCAGGCCGTGTAGAGTTCCGGGATTACTGCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 90 bp TCGGCTATGCTGCTGTGTTGCTGGCTGGTATCCCCACTCTGCAGGTaGTTTCCTACGGTGTCTGTCACCAGCATCCCATTTTCCACCGGC +
Preference number: 1 (lower is better)
Translates to: SAMLLCCWLVSPLCR*FPTVSVTSIPFSTG
Trigger: GCCGGTGGAAAATGGGATGCTGGTGACAGACACCGTAGGAAAGCACCTGCAGAGTGGGGATACCAGCCAGCAACACAGCAGCATAGCCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130671.8
3UTR TCA 90 bp GTCTTCTCGATACCTCAGGCAGTAATCCCGGAACTCTACACGGCCTaGATGGGGCCAGGTGCTGGGTGGAGCTGTTTCCTGGATTTGCCA +
Preference number: 1 (lower is better)
Translates to: VFSIPQAVIPELYTA*MGPGAGWSCFLDLP
Trigger: TGGCAAATCCAGGAAACAGCTCCACCCAGCACCTGGCCCCATTCAGGCCGTGTAGAGTTCCGGGATTACTGCCTGAGGTATCGAGAAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 90 bp CCGACAGTAGGACGCAAGCCCAGGTATTTATGGACTTTGCCATTCTaGCTCACTGCCAGACTCCAGGCAGCTCTTACCTTTGCCCTCCCC +
Preference number: 1 (lower is better)
Translates to: PTVGRKPRYLWTLPF*LTARLQAALTFALP
Trigger: GGGGAGGGCAAAGGTAAGAGCTGCCTGGAGTCTGGCAGTGAGGCAGAATGGCAAAGTCCATAAATACCTGGGCTTGCGTCCTACTGTCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR GCA 90 bp GTATCCCCACTGTGGGAAGACGAGTTGCTGAGATGCCTCTGCAGGTaGTTTCCTACGGTGTCTGTCACCAGCATCCCATTTTCCACCGGC +
Preference number: 1 (lower is better)
Translates to: VSPLWEDELLRCLCR*FPTVSVTSIPFSTG
Trigger: GCCGGTGGAAAATGGGATGCTGGTGACAGACACCGTAGGAAAGCACCTGCAGAGGCATCTCAGCAACTCGTCTTCCCACAGTGGGGATAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 90 bp TGTTGCTGGCTGGTATCCCCACTGTGGGAAGACGAGTTGCTGAGATaGCTCTGCAGGTGCTTTCCTACGGTGTCTGTCACCAGCATCCCA +
Preference number: 1 (lower is better)
Translates to: CCWLVSPLWEDELLR*LCRCFPTVSVTSIP
Trigger: TGGGATGCTGGTGACAGACACCGTAGGAAAGCACCTGCAGAGGCATCTCAGCAACTCGTCTTCCCACAGTGGGGATACCAGCCAGCAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 90 bp TCCTCCTTAGCTCCAGCCTTCTGCAGTTCGGCTATGCTGCTGTGTTaGTGGCTGGTATCCCCACTGTGGGAAGACGAGTTGCTGAGATGC +
Preference number: 1 (lower is better)
Translates to: SSLAPAFCSSAMLLC*WLVSPLWEDELLRC
Trigger: GCATCTCAGCAACTCGTCTTCCCACAGTGGGGATACCAGCCAGCAACACAGCAGCATAGCCGAACTGCAGAAGGCTGGAGCTAAGGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 90 bp GGCAAAGATGCCCCCGATGGACACAGCCATGGAGTAGCCAAATATTaGTGCACCTTGCAAGATGCCCAAGGCCCCATAGACACTCAGCCG +
Preference number: 1 (lower is better)
Translates to: GKDAPDGHSHGVAKY*CTLQDAQGPIDTQP
Trigger: CGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTGTCCATCGGGGGCATCTTTGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 90 bp TCCTCCTTAGCTCCAGCCTTCTGCAGTTCGGCTATGCTGCTGTGTTaGTGGCTGGTATCCCCACTCTGCAGGTGCTTTCCTACGGTGTCT +
Preference number: 1 (lower is better)
Translates to: SSLAPAFCSSAMLLC*WLVSPLCRCFPTVS
Trigger: AGACACCGTAGGAAAGCACCTGCAGAGTGGGGATACCAGCCAGCAACACAGCAGCATAGCCGAACTGCAGAAGGCTGGAGCTAAGGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130671.8
3UTR CCA 90 bp TGCAGTTCGGCTATGCTGCTGTGTTGCTGGCTGGTATCCCCACTGTaGGAAGACGAGTTGCTGAGATGCCTCTGCAGGTGCTTTCCTACG +
Preference number: 1 (lower is better)
Translates to: CSSAMLLCCWLVSPL*EDELLRCLCRCFPT
Trigger: CGTAGGAAAGCACCTGCAGAGGCATCTCAGCAACTCGTCTTCCCACAGTGGGGATACCAGCCAGCAACACAGCAGCATAGCCGAACTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CCA 90 bp TCCTTAGCTCCAGCCTTCTGCAGTTCGGCTATGCTGCTGTGTTGCTaGCTGGTATCCCCACTGTGGGAAGACGAGTTGCTGAGATGCCTC +
Preference number: 1 (lower is better)
Translates to: SLAPAFCSSAMLLCC*LVSPLWEDELLRCL
Trigger: GAGGCATCTCAGCAACTCGTCTTCCCACAGTGGGGATACCAGCCAGCAACACAGCAGCATAGCCGAACTGCAGAAGGCTGGAGCTAAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR TCA 90 bp CCAGCATCCCATTTTCCACCGGCTTTGACTCCTTCCCTGAACCACTaGCACCATTCTTACTGTCATCCTCCGAGGCCAGGTCCTGCTCAG +
Preference number: 1 (lower is better)
Translates to: PASHFPPALTPSLNH*HHSYCHPPRPGPAQ
Trigger: CTGAGCAGGACCTGGCCTCGGAGGATGACAGTAAGAATGGTGTCAGTGGTTCAGGGAAGGAGTCAAAGCCGGTGGAAAATGGGATGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 90 bp TGGCTGGTATCCCCACTGTGGGAAGACGAGTTGCTGAGATGCCTCTaGAGGTGCTTTCCTACGGTGTCTGTCACCAGCATCCCATTTTCC +
Preference number: 1 (lower is better)
Translates to: WLVSPLWEDELLRCL*RCFPTVSVTSIPFS
Trigger: GGAAAATGGGATGCTGGTGACAGACACCGTAGGAAAGCACCTGCAGAGGCATCTCAGCAACTCGTCTTCCCACAGTGGGGATACCAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 90 bp CGGCCTGAATGGGGCCAGGTGCTGGGTGGAGCTGTTTCCTGGATTTaGCAAGGAGCCTCCTTCTCTGTTTCAGAATACTCCTTCAGTCTC +
Preference number: 1 (lower is better)
Translates to: RPEWGQVLGGAVSWI*QGASFSVSEYSFSL
Trigger: GAGACTGAAGGAGTATTCTGAAACAGAGAAGGAGGCTCCTTGGCAAATCCAGGAAACAGCTCCACCCAGCACCTGGCCCCATTCAGGCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 90 bp TGCAGTTCGGCTATGCTGCTGTGTTGCTGGCTGGTATCCCCACTCTaGAGGTGCTTTCCTACGGTGTCTGTCACCAGCATCCCATTTTCC +
Preference number: 1 (lower is better)
Translates to: CSSAMLLCCWLVSPL*RCFPTVSVTSIPFS
Trigger: GGAAAATGGGATGCTGGTGACAGACACCGTAGGAAAGCACCTGCAGAGTGGGGATACCAGCCAGCAACACAGCAGCATAGCCGAACTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130671.8
3UTR CCA 90 bp ATAGCAGGTCCAGGTGCAAGCGACGGGAGGCAAAGATGCCCCCGATaGACACAGCCATGGAGTAGCCAAATATTGCTGCACCTTGCAAGA +
Preference number: 1 (lower is better)
Translates to: IAGPGASDGRQRCPR*TQPWSSQILLHLAR
Trigger: TCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTGTCCATCGGGGGCATCTTTGCCTCCCGTCGCTTGCACCTGGACCTGCTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR TCA 90 bp GGAGCATGGGTGAACTTTCAGGGTGCCAGAGGCCAGACGTGTATCTaGAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCC +
Preference number: 1 (lower is better)
Translates to: GAWVNFQGARGQTCI*SGVHLSSSFFKVRS
Trigger: GGATCTGACCTTGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGGCACCCTGAAAGTTCACCCATGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 90 bp AGGACGCAAGCCCAGGTATTTATGGACTTTGCCATTCTGCCTCACTaGCAGACTCCAGGCAGCTCTTACCTTTGCCCTCCCCCATCTCTT +
Preference number: 1 (lower is better)
Translates to: RTQAQVFMDFAILPH*QTPGSSYLCPPPSL
Trigger: AAGAGATGGGGGAGGGCAAAGGTAAGAGCTGCCTGGAGTCTGGCAGTGAGGCAGAATGGCAAAGTCCATAAATACCTGGGCTTGCGTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR GCA 90 bp GAACATTGTATAGCAGGTCCAGGTGCAAGCGACGGGAGGCAAAGATaGCCCCGATGGACACAGCCATGGAGTAGCCAAATATTGCTGCAC +
Preference number: 1 (lower is better)
Translates to: EHCIAGPGASDGRQR*PRWTQPWSSQILLH
Trigger: GTGCAGCAATATTTGGCTACTCCATGGCTGTGTCCATCGGGGGCATCTTTGCCTCCCGTCGCTTGCACCTGGACCTGCTATACAATGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 90 bp AAGAAACTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTaGAAGCGACGGGAGGCAAAGATGCCCCCGATGGACACAGCCATG +
Preference number: 1 (lower is better)
Translates to: KKLMGDRRTLYSRSR*KRREAKMPPMDTAM
Trigger: CATGGCTGTGTCCATCGGGGGCATCTTTGCCTCCCGTCGCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CCA 90 bp TCTACACGGCCTGAATGGGGCCAGGTGCTGGGTGGAGCTGTTTCCTaGATTTGCCAAGGAGCCTCCTTCTCTGTTTCAGAATACTCCTTC +
Preference number: 1 (lower is better)
Translates to: STRPEWGQVLGGAVS*ICQGASFSVSEYSF
Trigger: GAAGGAGTATTCTGAAACAGAGAAGGAGGCTCCTTGGCAAATCCAGGAAACAGCTCCACCCAGCACCTGGCCCCATTCAGGCCGTGTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 90 bp AAAGATGCCCCCGATGGACACAGCCATGGAGTAGCCAAATATTGCTaGACCTTGCAAGATGCCCAAGGCCCCATAGACACTCAGCCGAAA +
Preference number: 1 (lower is better)
Translates to: KDAPDGHSHGVAKYC*TLQDAQGPIDTQPK
Trigger: TTTCGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTGTCCATCGGGGGCATCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR TCA 90 bp ACTGAACCTGGGTCCTCTGCAGGTACATCATGCATTCCTAACCTCTaGGCCATTGCTCTAGCTCCCACCTTATGCTCTCACTGGACAAGG +
Preference number: 1 (lower is better)
Translates to: TEPGSSAGTSCIPNL*AIALAPTLCSHWTR
Trigger: CCTTGTCCAGTGAGAGCATAAGGTGGGAGCTAGAGCAATGGCTCAGAGGTTAGGAATGCATGATGTACCTGCAGAGGACCCAGGTTCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR GCA 90 bp TGGACACAGCCATGGAGTAGCCAAATATTGCTGCACCTTGCAAGATaGCCAAGGCCCCATAGACACTCAGCCGAAAATTCCTGTTCGCCT +
Preference number: 1 (lower is better)
Translates to: WTQPWSSQILLHLAR*PRPHRHSAENSCSP
Trigger: AGGCGAACAGGAATTTTCGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTGTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CCA 90 bp ATGGGTGAACTTTCAGGGTGCCAGAGGCCAGACGTGTATCTGAAGTaGGGTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGAT +
Preference number: 1 (lower is better)
Translates to: MGELSGCQRPDVYLK*GASVFQLLQGQIQD
Trigger: ATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGGCACCCTGAAAGTTCACCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 90 bp CACAACCTAGAGGACCACTTTGAAGTATTCAGACTGAGGATCAAGTaGAGAGCTGGGCATGGCTGCTCCCTGAATCTAGTACCTTCTCCC +
Preference number: 1 (lower is better)
Translates to: HNLEDHFEVFRLRIK*RAGHGCSLNLVPSP
Trigger: GGGAGAAGGTACTAGATTCAGGGAGCAGCCATGCCCAGCTCTGCACTTGATCCTCAGTCTGAATACTTCAAAGTGGTCCTCTAGGTTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR CCA 90 bp TCACATGTCCAAAAACCGACAGTAGGACGCAAGCCCAGGTATTTATaGACTTTGCCATTCTGCCTCACTGCCAGACTCCAGGCAGCTCTT +
Preference number: 1 (lower is better)
Translates to: SHVQKPTVGRKPRYL*TLPFCLTARLQAAL
Trigger: AAGAGCTGCCTGGAGTCTGGCAGTGAGGCAGAATGGCAAAGTCCATAAATACCTGGGCTTGCGTCCTACTGTCGGTTTTTGGACATGTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR GCA 90 bp TTTGAAGTATTCAGACTGAGGATCAAGTGCAGAGCTGGGCATGGCTaGTCCCTGAATCTAGTACCTTCTCCCAGACATCAAATTCTTGGG +
Preference number: 1 (lower is better)
Translates to: FEVFRLRIKCRAGHG*SLNLVPSPRHQILG
Trigger: CCCAAGAATTTGATGTCTGGGAGAAGGTACTAGATTCAGGGAGCAGCCATGCCCAGCTCTGCACTTGATCCTCAGTCTGAATACTTCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR CCA 90 bp GGACTGACATTAGAGCCAAAATTCAAAGCAAGTATGAACTGTGGCTaGCATCAAGTTCTTGCTAACCATGGGGGTCTCTCTTTGGTCTGT +
Preference number: 1 (lower is better)
Translates to: GLTLEPKFKASMNCG*HQVLANHGGLSLVC
Trigger: ACAGACCAAAGAGAGACCCCCATGGTTAGCAAGAACTTGATGCCAGCCACAGTTCATACTTGCTTTGAATTTTGGCTCTAATGTCAGTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CCA 90 bp CCCCCTGACAGGTTCACACCCTTCTCACCGATCTCTGTGCGGTCCCCACTGGGCGAGCCCCATTCAGTGTaGGAGGTTCACCCCTGGCCC +
Preference number: 2 (lower is better)
Translates to: PPDRFTPFSPISVRSPLGEPHSV*EVHPWP
Trigger: GGGCCAGGGGTGAACCTCCCACACTGAATGGGGCTC...GCCCAGTGGGGACCGCACAGAGATCGGTGAGAAGGGTGTGAACCTGTCAGGGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000133454.8
3UTR-3UTR TCA 90 bp CAGGTCCTGCTCAGCGTTGGCATAGGTGCGCAGGAACTCAGCGAAGGCCCCATCCTGCTTCTGGCCCCCTaGCAGGTTCACACCCTTCTC +
Preference number: 2 (lower is better)
Translates to: QVLLSVGIGAQELSEGPILLLAP*QVHTLL
Trigger: GAGAAGGGTGTGAACCTGTCAGGGGGCCAGAAGCAG...GATGGGGCCTTCGCTGAGTTCCTGCGCACCTATGCCAACGCTGAGCAGGACCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp CAGGTCCTGCTCAGCGTTGGCATAGGTGCGCAGGAACTCAGCGAAGGCCCCATCTTGCTGGCTCATGCCTaGACTCTGGGATCCTGGCCC +
Preference number: 2 (lower is better)
Translates to: QVLLSVGIGAQELSEGPILLAHA*TLGSWP
Trigger: GGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAA...GATGGGGCCTTCGCTGAGTTCCTGCGCACCTATGCCAACGCTGAGCAGGACCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp CCCCCTGACAGGTTCACACCCTTCTCACCGATCTCTGTGCGGTCCCCACTGGGCCTGTGCGGTCCCCACTaGGCAGGATTTCCAAATCTG +
Preference number: 2 (lower is better)
Translates to: PPDRFTPFSPISVRSPLGLCGPH*AGFPNL
Trigger: CAGATTTGGAAATCCTGCCCAGTGGGGACCGCACAG...GCCCAGTGGGGACCGCACAGAGATCGGTGAGAAGGGTGTGAACCTGTCAGGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CAA 90 bp GCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATaGGATATGCCAGAGACCAGCTCACACCAAGCCAGCATCCTTGGC +
Preference number: 2 (lower is better)
Translates to: AGSCLDSGILALQSS*DMPETSSHQASILG
Trigger: GCCAAGGATGCTGGCTTGGTGTGAGCTGGTCTCTGGCATATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp TATAGCAGGTCCAGGTGCAAGCGACGGGAGGCAAAGATGCCCCCGATGGACACAGACGGGAGGCAAAGATaGCCCCGATGGACACAGCCA +
Preference number: 2 (lower is better)
Translates to: YSRSRCKRREAKMPPMDTDGRQR*PRWTQP
Trigger: TGGCTGTGTCCATCGGGGGCATCTTTGCCTCCCGTC...TGTGTCCATCGGGGGCATCTTTGCCTCCCGTCGCTTGCACCTGGACCTGCTATA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp TCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACCCGCGGGTGGGATGATGACTaGGGCAATGGGCGTGGCCAG +
Preference number: 2 (lower is better)
Translates to: SEGAPHSRTSPLSRTITRGWDDD*GNGRGQ
Trigger: CTGGCCACGCCCATTGCCGCAGTCATCATCCCACCC...GCGGGTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp CAGGTCCTGCTCAGCGTTGGCATAGGTGCGCAGGAACTCAGCGAAGGCCCCATCGATACGGCAGGAGCATaGGTGAACTTTCAGGGTGCC +
Preference number: 2 (lower is better)
Translates to: QVLLSVGIGAQELSEGPIDTAGA*VNFQGA
Trigger: GGCACCCTGAAAGTTCACCCATGCTCCTGCCGTATC...GATGGGGCCTTCGCTGAGTTCCTGCGCACCTATGCCAACGCTGAGCAGGACCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp CCCCACACTCAGGTTCTCTCCACCTTCTGCACACTCATGGTTCAGCTTGTCAGGTTCCCGCAGCCTACCTaGCCCACCACGGCCACAAGG +
Preference number: 2 (lower is better)
Translates to: PHTQVLSTFCTLMVQLVRFPQPT*PTTATR
Trigger: CCTTGTGGCCGTGGTGGGCCAGGTAGGCTGCGGGAA...CCTGACAAGCTGAACCATGAGTGTGCAGAAGGTGGAGAGAACCTGAGTGTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000130671.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp GGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGGGAACAAACCCAGGGTaGGAGATGATTTCCCAGCTC +
Preference number: 2 (lower is better)
Translates to: GLLAHAWTLGSWPCSPHWGTNPG*EMISQL
Trigger: GAGCTGGGAAATCATCTCTCACCCTGGGTTTGTTCC...CCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp GTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATAGGGTTGCTGGCTCATaGCTGGACTCTGGGATCCTG +
Preference number: 2 (lower is better)
Translates to: VAGSCLDSGILALQSSLDRVAGS*LDSGIL
Trigger: CAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCT...ATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp TCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACCCGCTCTCACCGATCTCTGTaGGGTCCCCACTGGGCAGGA +
Preference number: 2 (lower is better)
Translates to: SEGAPHSRTSPLSRTITRSHRSL*GPHWAG
Trigger: TCCTGCCCAGTGGGGACCGCACAGAGATCGGTGAGA...GCGGGTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp GTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATCAGCGTTGGCATAGGTaGGCAGGAACTCAGCGAAGG +
Preference number: 2 (lower is better)
Translates to: VAGSCLDSGILALQSSLDQRWHR*AGTQRR
Trigger: CCTTCGCTGAGTTCCTGCGCACCTATGCCAACGCTG...ATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp TATAGCAGGTCCAGGTGCAAGCGACGGGAGGCAAAGATGCCCCCGATGGACACAACTGACAGCTGCACCTaGCCTGTCTGGGCCTTGTCT +
Preference number: 2 (lower is better)
Translates to: YSRSRCKRREAKMPPMDTTDSCT*PVWALS
Trigger: AGACAAGGCCCAGACAGGGCAGGTGCAGCTGTCAGT...TGTGTCCATCGGGGGCATCTTTGCCTCCCGTCGCTTGCACCTGGACCTGCTATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp GCTCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACCCGACGGGAGGCAAAGATaGCCCCGATGGACACAGCCA +
Preference number: 2 (lower is better)
Translates to: AQRVHHTPELLLCPGQSPDGRQR*PRWTQP
Trigger: TGGCTGTGTCCATCGGGGGCATCTTTGCCTCCCGTC...GGGTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp ATGAAGCGCTCCTGCTCCTCAAAAGCACGGATGACACTGACTCCCAGCAAGGTCGGGTGGGATGATGACTaGGGCAATGGGCGTGGCCAG +
Preference number: 2 (lower is better)
Translates to: MKRSCSSKARMTLTPSKVGWDDD*GNGRGQ
Trigger: CTGGCCACGCCCATTGCCGCAGTCATCATCCCACCC...GACCTTGCTGGGAGTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp GTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATTGGACTCTGGGATCCTaGCCCTGCAGTCCTCATTGG +
Preference number: 2 (lower is better)
Translates to: VAGSCLDSGILALQSSLDWTLGS*PCSPHW
Trigger: CCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCA...ATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp GTCGCTGCCCCACACTCAGGTTCTCTCCACCTTCTGCACACTCATGGTTCAGCTTTGCTGGCTCATGCCTaGACTCTGGGATCCTGGCCC +
Preference number: 2 (lower is better)
Translates to: VAAPHSGSLHLLHTHGSALLAHA*TLGSWP
Trigger: GGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAA...AGCTGAACCATGAGTGTGCAGAAGGTGGAGAGAACCTGAGTGTGGGGCAGCGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp ACACTGACTCCCAGCAAGGTCTCATTGAAGTGTGAGTACACAGGGGAACGGCTGTTCCCGCAGCCTACCTaGCCCACCACGGCCACAAGG +
Preference number: 2 (lower is better)
Translates to: TLTPSKVSLKCEYTGERLFPQPT*PTTATR
Trigger: CCTTGTGGCCGTGGTGGGCCAGGTAGGCTGCGGGAA...CAGCCGTTCCCCTGTGTACTCACACTTCAATGAGACCTTGCTGGGAGTCAGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000130671.8
ENSMUST00000147759.8
3UTR CAA 90 bp CTCCTCCTTAGCTCCAGCCTTCTGCAGTTCGGCTATGCTGCTGTGTaGCTGGCTGGTATCCCCACTCTGCAGGTGCTTTCCTACGGTGTC +
Preference number: 2 (lower is better)
Translates to: LLLSSSLLQFGYAAV*LAGIPTLQVLSYGV
Trigger: GACACCGTAGGAAAGCACCTGCAGAGTGGGGATACCAGCCAGCAACACAGCAGCATAGCCGAACTGCAGAAGGCTGGAGCTAAGGAGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130671.8
3UTR-3UTR TCA 90 bp GTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATCAGTGTCAGCGTGCATaGAGACCAGATGGCAGGAAG +
Preference number: 2 (lower is better)
Translates to: VAGSCLDSGILALQSSLDQCQRA*RPDGRK
Trigger: CTTCCTGCCATCTGGTCTTCATGCACGCTGACACTG...ATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR TCA 90 bp CTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCGACGGGAGCTGCTTCTGGCCCCCTaGCAGGTTCACACCCTTCTC +
Preference number: 2 (lower is better)
Translates to: LMGDRRTLYSRSRCKRRELLLAP*QVHTLL
Trigger: GAGAAGGGTGTGAACCTGTCAGGGGGCCAGAAGCAG...CTCCCGTCGCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp GGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGTGCAGTTATCTGCAGTaGGTAAGACACAGAGAGGCC +
Preference number: 2 (lower is better)
Translates to: GLLAHAWTLGSWPCSPHWCSYLQ*VRHREA
Trigger: GGCCTCTCTGTGTCTTACTCACTGCAGATAACTGCA...CCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp AGCCTTCTGCAGTTCGGCTATGCTGCTGTGTTGCTGGCTGGTATCCCCACTGTGCAGCGTTGGCATAGGTaGGCAGGAACTCAGCGAAGG +
Preference number: 2 (lower is better)
Translates to: SLLQFGYAAVLLAGIPTVQRWHR*AGTQRR
Trigger: CCTTCGCTGAGTTCCTGCGCACCTATGCCAACGCTG...CACAGTGGGGATACCAGCCAGCAACACAGCAGCATAGCCGAACTGCAGAAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CAA 90 bp CTCCTCCTTAGCTCCAGCCTTCTGCAGTTCGGCTATGCTGCTGTGTaGCTGGCTGGTATCCCCACTGTGGGAAGACGAGTTGCTGAGATG +
Preference number: 2 (lower is better)
Translates to: LLLSSSLLQFGYAAV*LAGIPTVGRRVAEM
Trigger: CATCTCAGCAACTCGTCTTCCCACAGTGGGGATACCAGCCAGCAACACAGCAGCATAGCCGAACTGCAGAAGGCTGGAGCTAAGGAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCACGGAGAGAGTCATTCTaGATCCAGGCCTGCTGGGGC +
Preference number: 2 (lower is better)
Translates to: PEARRVSEVGCICLPASSRRESF*IQACWG
Trigger: GCCCCAGCAGGCCTGGATTCAGAATGACTCTCTCCG...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp CCTCATTGGATATGCCAGAGACCAGCTCACACCAAGCCAGCATCCTTGGCCATGAGGGTTGCTGGCTCATaGCTGGACTCTGGGATCCTG +
Preference number: 2 (lower is better)
Translates to: PHWICQRPAHTKPASLAMRVAGS*LDSGIL
Trigger: CAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCT...CATGGCCAAGGATGCTGGCTTGGTGTGAGCTGGTCTCTGGCATATCCAATGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp GTCATCTGTCCAGAGGCTCAGCCAATAGTTAGAGGCCAGTGCAGATACATGGTTGCCAGGCTCACACGCTaGTTCTGGCCCCCTGACAGG +
Preference number: 2 (lower is better)
Translates to: VICPEAQPIVRGQCRYMVARLTR*FWPPDR
Trigger: CCTGTCAGGGGGCCAGAAGCAGCGTGTGAGCCTGGC...AACCATGTATCTGCACTGGCCTCTAACTATTGGCTGAGCCTCTGGACAGATGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp CTCATTGGATATGCCAGAGACCAGCTCACACCAAGCCAGCATCCTTGGCCATGCACTGACAGCTGCACCTaGCCTGTCTGGGCCTTGTCT +
Preference number: 2 (lower is better)
Translates to: LIGYARDQLTPSQHPWPCTDSCT*PVWALS
Trigger: AGACAAGGCCCAGACAGGGCAGGTGCAGCTGTCAGT...GCATGGCCAAGGATGCTGGCTTGGTGTGAGCTGGTCTCTGGCATATCCAATGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp GGAATGATGGTGATCTTGAAGCGCAGGTTGTGCAGGCCGATCTTGGCGATGTTGCAGTACACTGACAGCTaGACCTGCCCTGTCTGGGCC +
Preference number: 2 (lower is better)
Translates to: GMMVILKRRLCRPILAMLQYTDS*TCPVWA
Trigger: GGCCCAGACAGGGCAGGTGCAGCTGTCAGTGTACTG...CAACATCGCCAAGATCGGCCTGCACAACCTGCGCTTCAAGATCACCATCATTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp GCTCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACCCGTGCCGGGAGATGACTaGAAAGAGGGCAGCAAACAG +
Preference number: 2 (lower is better)
Translates to: AQRVHHTPELLLCPGQSPVPGDD*KEGSKQ
Trigger: CTGTTTGCTGCCCTCTTTGCAGTCATCTCCCGGCAC...GGGTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp GGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGCTTCAGTCTCTCCACTaGCACAATGTTGGTCTCCAT +
Preference number: 2 (lower is better)
Translates to: GLLAHAWTLGSWPCSPHWLQSLH*HNVGLH
Trigger: ATGGAGACCAACATTGTGGCAGTGGAGAGACTGAAG...CCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp CCCAGCAAGGTCTCATTGAAGTGTGAGTACACAGGGGAACGGCTGACAGACTCCTGGACTCTGGGATCCTaGCCCTGCAGTCCTCATTGG +
Preference number: 2 (lower is better)
Translates to: PSKVSLKCEYTGERLTDSWTLGS*PCSPHW
Trigger: CCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCA...GGAGTCTGTCAGCCGTTCCCCTGTGTACTCACACTTCAATGAGACCTTGCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp GGAATGATGGTGATCTTGAAGCGCAGGTTGTGCAGGCCGATCTTGGCGATGTTGTTGCTGGCTCATGCCTaGACTCTGGGATCCTGGCCC +
Preference number: 2 (lower is better)
Translates to: GMMVILKRRLCRPILAMLLLAHA*TLGSWP
Trigger: GGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAA...CAACATCGCCAAGATCGGCCTGCACAACCTGCGCTTCAAGATCACCATCATTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp CCCCACACTCAGGTTCTCTCCACCTTCTGCACACTCATGGTTCAGCTTGTCAGGGGTCCTGCTCAGCGTTaGCATAGGTGCGCAGGAACT +
Preference number: 2 (lower is better)
Translates to: PHTQVLSTFCTLMVQLVRGPAQR*HRCAGT
Trigger: AGTTCCTGCGCACCTATGCCAACGCTGAGCAGGACC...CCTGACAAGCTGAACCATGAGTGTGCAGAAGGTGGAGAGAACCTGAGTGTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp TCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACCCGCTGCTGTGTTGCTGGCTaGTATCCCCACTGTGGGAAG +
Preference number: 2 (lower is better)
Translates to: SEGAPHSRTSPLSRTITRCCVAG*YPHCGK
Trigger: CTTCCCACAGTGGGGATACCAGCCAGCAACACAGCA...GCGGGTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp GCTCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACCCTGCACCTGCCCTGTCTaGGCCTTGTCTGCTTCCATT +
Preference number: 2 (lower is better)
Translates to: AQRVHHTPELLLCPGQSPCTCPV*ALSASI
Trigger: AATGGAAGCAGACAAGGCCCAGACAGGGCAGGTGCA...GGGTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CAA 90 bp AGGCAAAGATGCCCCCGATGGACACAGCCATGGAGTAGCCAAATATaGCTGCACCTTGCAAGATGCCCAAGGCCCCATAGACACTCAGCC +
Preference number: 2 (lower is better)
Translates to: RQRCPRWTQPWSSQI*LHLARCPRPHRHSA
Trigger: GGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTGTCCATCGGGGGCATCTTTGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp GGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGCCTAGAGGACCACTTTaGAGTATTCAGACTGAGGAT +
Preference number: 2 (lower is better)
Translates to: GLLAHAWTLGSWPCSPHWPRGPL*SIQTED
Trigger: ATCCTCAGTCTGAATACTTCAAAGTGGTCCTCTAGG...CCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR TCA 90 bp GGTATCCCCACTCTGCAGGTGCTTTCCTACGGTGTCTGTCACCAGCATCCCATTCACCCCTGGCCCAAGTaGAGGTTGCATTCTTCACAG +
Preference number: 2 (lower is better)
Translates to: GIPTLQVLSYGVCHQHPIHPWPK*RLHSSQ
Trigger: CTGTGAAGAATGCAACCTTCACTTGGGCCAGGGGTG...AATGGGATGCTGGTGACAGACACCGTAGGAAAGCACCTGCAGAGTGGGGATACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130671.8
3UTR-3UTR TCA 90 bp CTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCGACGGGAGCACCCCTGGCCCAAGTaGAGGTTGCATTCTTCACAG +
Preference number: 2 (lower is better)
Translates to: LMGDRRTLYSRSRCKRREHPWPK*RLHSSQ
Trigger: CTGTGAAGAATGCAACCTTCACTTGGGCCAGGGGTG...CTCCCGTCGCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp TTCAGTCTCTCCACTGCCACAATGTTGGTCTCCATCTCCGAGGACATTCGAACCCGGAGAGAGTCATTCTaGATCCAGGCCTGCTGGGGC +
Preference number: 2 (lower is better)
Translates to: FSLSTATMLVSISEDIRTRRESF*IQACWG
Trigger: GCCCCAGCAGGCCTGGATTCAGAATGACTCTCTCCG...GGTTCGAATGTCCTCGGAGATGGAGACCAACATTGTGGCAGTGGAGAGACTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp ACACAGCCATGGAGTAGCCAAATATTGCTGCACCTTGCAAGATGCCCAAGGCCCAGGGTTGCTGGCTCATaGCTGGACTCTGGGATCCTG +
Preference number: 2 (lower is better)
Translates to: TQPWSSQILLHLARCPRPRVAGS*LDSGIL
Trigger: CAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCT...GGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAGCCATTCTGCCTCACTaGCAGACTCCAGGCAGCTCT +
Preference number: 2 (lower is better)
Translates to: PEARRVSEVGCICLPASSAILPH*QTPGSS
Trigger: AGAGCTGCCTGGAGTCTGGCAGTGAGGCAGAATGGC...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR GCA 90 bp GTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGCCAGGCTCACACGCTaGTTCTGGCCCCCTGACAGG +
Preference number: 2 (lower is better)
Translates to: VHLSSSFFKVRSRMKPNGARLTR*FWPPDR
Trigger: CCTGTCAGGGGGCCAGAAGCAGCGTGTGAGCCTGGC...ACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp GCTGTCGCTGCCCCACACTCAGGTTCTCTCCACCTTCTGCACACTCATGGTTCAAGATGCCTCTGCAGGTaGTTTCCTACGGTGTCTGTC +
Preference number: 2 (lower is better)
Translates to: AVAAPHSGSLHLLHTHGSRCLCR*FPTVSV
Trigger: GACAGACACCGTAGGAAAGCACCTGCAGAGGCATCT...TGAACCATGAGTGTGCAGAAGGTGGAGAGAACCTGAGTGTGGGGCAGCGACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp AGGGTCCAAGTTCATGCGGAGGGAACCCGAGAACAAAACAGGATCCTGTGGAATCAGTACACTGACAGCTaGACCTGCCCTGTCTGGGCC +
Preference number: 2 (lower is better)
Translates to: RVQVHAEGTREQNRILWNQYTDS*TCPVWA
Trigger: GGCCCAGACAGGGCAGGTGCAGCTGTCAGTGTACTG...ATTCCACAGGATCCTGTTTTGTTCTCGGGTTCCCTCCGCATGAACTTGGACCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp ACACAGCCATGGAGTAGCCAAATATTGCTGCACCTTGCAAGATGCCCAAGGCCCTGGACTCTGGGATCCTaGCCCTGCAGTCCTCATTGG +
Preference number: 2 (lower is better)
Translates to: TQPWSSQILLHLARCPRPWTLGS*PCSPHW
Trigger: CCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCA...GGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp AGGAGCTCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCGATACGGCAGGAGCATaGGTGAACTTTCAGGGTGCC +
Preference number: 2 (lower is better)
Translates to: RSSEGAPHSRTSPLSRTIDTAGA*VNFQGA
Trigger: GGCACCCTGAAAGTTCACCCATGCTCCTGCCGTATC...GATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGAGCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp GCTGAGATGCCTCTGCAGGTGCTTTCCTACGGTGTCTGTCACCAGCATCCCATTCTGTGCGGTCCCCACTaGGCAGGATTTCCAAATCTG +
Preference number: 2 (lower is better)
Translates to: AEMPLQVLSYGVCHQHPILCGPH*AGFPNL
Trigger: CAGATTTGGAAATCCTGCCCAGTGGGGACCGCACAG...AATGGGATGCTGGTGACAGACACCGTAGGAAAGCACCTGCAGAGGCATCTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp AAAGAAGTAAACCAGACCCAAGGGTGGGATGATGACTGCGGCAATGGGCGTGGCTGCACCTGCCCTGTCTaGGCCTTGTCTGCTTCCATT +
Preference number: 2 (lower is better)
Translates to: KEVNQTQGWDDDCGNGRGCTCPV*ALSASI
Trigger: AATGGAAGCAGACAAGGCCCAGACAGGGCAGGTGCA...GCCACGCCCATTGCCGCAGTCATCATCCCACCCTTGGGTCTGGTTTACTTCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp TCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACCCGCTGTTGGCCACAATGCTaGGGTAGTAGGCCTTCTGGT +
Preference number: 2 (lower is better)
Translates to: SEGAPHSRTSPLSRTITRCWPQC*GSRPSG
Trigger: ACCAGAAGGCCTACTACCCCAGCATTGTGGCCAACA...GCGGGTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAGTAGTTCCAGTACACTaGCAGCTGCACCTGCCCTGT +
Preference number: 2 (lower is better)
Translates to: PEARRVSEVGCICLPASSVVPVH*QLHLPC
Trigger: ACAGGGCAGGTGCAGCTGTCAGTGTACTGGAACTAC...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp CCCCACACTCAGGTTCTCTCCACCTTCTGCACACTCATGGTTCAGCTTGTCAGGGGTCTCATTGAAGTGTaGGTACACAGGGGAACGGCT +
Preference number: 2 (lower is better)
Translates to: PHTQVLSTFCTLMVQLVRGLIEV*VHRGTA
Trigger: AGCCGTTCCCCTGTGTACTCACACTTCAATGAGACC...CCTGACAAGCTGAACCATGAGTGTGCAGAAGGTGGAGAGAACCTGAGTGTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp GTCACTCTGGTGAATGAAGCGCTCCTGCTCCTCAAAAGCACGGATGACACTGACGGTCACTCTGGTGAATaGAGCGCTCCTGCTCCTCAA +
Preference number: 2 (lower is better)
Translates to: VTLVNEALLLLKSTDDTDGHSGE*SAPAPQ
Trigger: TTGAGGAGCAGGAGCGCTTCATTCACCAGAGTGACC...GTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCATTCACCAGAGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp CTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCGACGGGAGCAGGAATGGAGAAGGTaGTGCCATTCAGTGTGGGAG +
Preference number: 2 (lower is better)
Translates to: LMGDRRTLYSRSRCKRREQEWRR*CHSVWE
Trigger: CTCCCACACTGAATGGCATCACCTTCTCCATTCCTG...CTCCCGTCGCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000130671.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp CCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGGAACAAACCCAGGTCTCACCGATCTCTGTaGGGTCCCCACTGGGCAGGA +
Preference number: 2 (lower is better)
Translates to: PSMMISPSADSLIRNKPRSHRSL*GPHWAG
Trigger: TCCTGCCCAGTGGGGACCGCACAGAGATCGGTGAGA...CCTGGGTTTGTTCCGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp CTCCACCTTCTGCACACTCATGGTTCAGCTTGTCAGGCAAAGCTGACACAAAGCACTGACAGCTGCACCTaGCCTGTCTGGGCCTTGTCT +
Preference number: 2 (lower is better)
Translates to: LHLLHTHGSACQAKLTQSTDSCT*PVWALS
Trigger: AGACAAGGCCCAGACAGGGCAGGTGCAGCTGTCAGT...GCTTTGTGTCAGCTTTGCCTGACAAGCTGAACCATGAGTGTGCAGAAGGTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp GCTCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACCCAATATTGCTGCACCTTaGAAGATGCCCAAGGCCCCA +
Preference number: 2 (lower is better)
Translates to: AQRVHHTPELLLCPGQSPNIAAP*KMPKAP
Trigger: TGGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATT...GGGTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp CCCCACACTCAGGTTCTCTCCACCTTCTGCACACTCATGGTTCAGCTTGTCAGGACAGCACAATGCAGTTaGCCACACACTCAAGGCGCA +
Preference number: 2 (lower is better)
Translates to: PHTQVLSTFCTLMVQLVRTAQCS*PHTQGA
Trigger: TGCGCCTTGAGTGTGTGGGCAACTGCATTGTGCTGT...CCTGACAAGCTGAACCATGAGTGTGCAGAAGGTGGAGAGAACCTGAGTGTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp CTCATTGGATATGCCAGAGACCAGCTCACACCAAGCCAGCATCCTTGGCCATGCAAGGGTCCAAGTTCATaGGGAGGGAACCCGAGAACA +
Preference number: 2 (lower is better)
Translates to: LIGYARDQLTPSQHPWPCKGPSS*GGNPRT
Trigger: TGTTCTCGGGTTCCCTCCGCATGAACTTGGACCCTT...GCATGGCCAAGGATGCTGGCTTGGTGTGAGCTGGTCTCTGGCATATCCAATGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp CTGCACCTTGCAAGATGCCCAAGGCCCCATAGACACTCAGCCGAAAATTCCTGTTCCCCACTCTGCAGGTaGTTTCCTACGGTGTCTGTC +
Preference number: 2 (lower is better)
Translates to: LHLARCPRPHRHSAENSCSPLCR*FPTVSV
Trigger: GACAGACACCGTAGGAAAGCACCTGCAGAGTGGGGA...ACAGGAATTTTCGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000130671.8
3UTR-3UTR CCA 90 bp TGCACCTTGCAAGATGCCCAAGGCCCCATAGACACTCAGCCGAAAATTCCTGTTTGGACTCTGGGATCCTaGCCCTGCAGTCCTCATTGG +
Preference number: 2 (lower is better)
Translates to: CTLQDAQGPIDTQPKIPVWTLGS*PCSPHW
Trigger: CCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCA...AACAGGAATTTTCGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp AAAACAGGATCCTGTGGAATGATGGTGATCTTGAAGCGCAGGTTGTGCAGGCCGGGTTTCCAGGGTTGCTaGCTCATGCCTGGACTCTGG +
Preference number: 2 (lower is better)
Translates to: KTGSCGMMVILKRRLCRPGFQGC*LMPGLW
Trigger: CCAGAGTCCAGGCATGAGCCAGCAACCCTGGAAACC...CGGCCTGCACAACCTGCGCTTCAAGATCACCATCATTCCACAGGATCCTGTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp GTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATATGGGGGTCTCTCTTTaGTCTGTAACTCACACAACC +
Preference number: 2 (lower is better)
Translates to: VAGSCLDSGILALQSSLDMGVSL*SVTHTT
Trigger: GGTTGTGTGAGTTACAGACCAAAGAGAGACCCCCAT...ATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CCA 90 bp GTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATACTGAACACAGGTGCTaGGAACTGAGACTTATCCCT +
Preference number: 2 (lower is better)
Translates to: VAGSCLDSGILALQSSLDTEHRC*ELRLIP
Trigger: AGGGATAAGTCTCAGTTCCCAGCACCTGTGTTCAGT...ATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CCA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCACTGTGCGGTCCCCACTaGGCAGGATTTCCAAATCTG +
Preference number: 2 (lower is better)
Translates to: PEARRVSEVGCICLPASSLCGPH*AGFPNL
Trigger: CAGATTTGGAAATCCTGCCCAGTGGGGACCGCACAG...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp GGCGATGTTGACCCCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGCTCACACGCTGCTTCTaGCCCCCTGACAGGTTCACA +
Preference number: 2 (lower is better)
Translates to: GDVDPINDDLPFCRLIDPLTRCF*PPDRFT
Trigger: TGTGAACCTGTCAGGGGGCCAGAAGCAGCGTGTGAG...CGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAACATCGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp CAAAGATGCCCCCGATGGACACAGCCATGGAGTAGCCAAATATTGCTGCACCTTGGTCCTGCTCAGCGTTaGCATAGGTGCGCAGGAACT +
Preference number: 2 (lower is better)
Translates to: QRCPRWTQPWSSQILLHLGPAQR*HRCAGT
Trigger: AGTTCCTGCGCACCTATGCCAACGCTGAGCAGGACC...AAGGTGCAGCAATATTTGGCTACTCCATGGCTGTGTCCATCGGGGGCATCTTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp ATGAGCAATCGTGAGCACAGTACAGTCTTCAAACTGTGTCCGGATGGTGGACTGTCTACACGGCCTGAATaGGGCCAGGTGCTGGGTGGA +
Preference number: 2 (lower is better)
Translates to: MSNREHSTVFKLCPDGGLSTRPE*GQVLGG
Trigger: TCCACCCAGCACCTGGCCCCATTCAGGCCGTGTAGA...CAGTCCACCATCCGGACACAGTTTGAAGACTGTACTGTGCTCACGATTGCTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CAA 90 bp ATCTTGATGACCTGCGGGATCATGGAGTCCACTGTGTCCAGCTCCTaGGAGAATCGGTTCACTAGGTTCCCACTGGGTGTACGCTCAAAG +
Preference number: 2 (lower is better)
Translates to: ILMTCGIMESTVSSS*ENRFTRFPLGVRSK
Trigger: CTTTGAGCGTACACCCAGTGGGAACCTAGTGAACCGATTCTCCAAGGAGCTGGACACAGTGGACTCCATGATCCCGCAGGTCATCAAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp CGGATGACACTGACTCCCAGCAAGGTCTCATTGAAGTGTGAGTACACAGGGGAACACCCCTGGCCCAAGTaGAGGTTGCATTCTTCACAG +
Preference number: 2 (lower is better)
Translates to: RMTLTPSKVSLKCEYTGEHPWPK*RLHSSQ
Trigger: CTGTGAAGAATGCAACCTTCACTTGGGCCAGGGGTG...TTCCCCTGTGTACTCACACTTCAATGAGACCTTGCTGGGAGTCAGTGTCATCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp CAAAGAAACTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCCGGAGAGAGTCATTCTaGATCCAGGCCTGCTGGGGC +
Preference number: 2 (lower is better)
Translates to: QRNSWVIAEHCIAGPGASRRESF*IQACWG
Trigger: GCCCCAGCAGGCCTGGATTCAGAATGACTCTCTCCG...GCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp AAAACAGGATCCTGTGGAATGATGGTGATCTTGAAGCGCAGGTTGTGCAGGCCGTTCAGGTCACTCTGGTaGATGAAGCGCTCCTGCTCC +
Preference number: 2 (lower is better)
Translates to: KTGSCGMMVILKRRLCRPFRSLW*MKRSCS
Trigger: GGAGCAGGAGCGCTTCATTCACCAGAGTGACCTGAA...CGGCCTGCACAACCTGCGCTTCAAGATCACCATCATTCCACAGGATCCTGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp CAAAGAAACTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCTCTCACCGATCTCTGTaGGGTCCCCACTGGGCAGGA +
Preference number: 2 (lower is better)
Translates to: QRNSWVIAEHCIAGPGASSHRSL*GPHWAG
Trigger: TCCTGCCCAGTGGGGACCGCACAGAGATCGGTGAGA...GCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp CTCCACCTTCTGCACACTCATGGTTCAGCTTGTCAGGCAAAGCTGACACAAAGCGTGCCGGGAGATGACTaGAAAGAGGGCAGCAAACAG +
Preference number: 2 (lower is better)
Translates to: LHLLHTHGSACQAKLTQSVPGDD*KEGSKQ
Trigger: CTGTTTGCTGCCCTCTTTGCAGTCATCTCCCGGCAC...GCTTTGTGTCAGCTTTGCCTGACAAGCTGAACCATGAGTGTGCAGAAGGTGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp GTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTTTGCTGGCTCATGCCTaGACTCTGGGATCCTGGCCC +
Preference number: 2 (lower is better)
Translates to: VHLSSSFFKVRSRMKPNGLLAHA*TLGSWP
Trigger: GGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAA...ACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp ATGAACATCTTGATGACCTGCGGGATCATGGAGTCCACTGTGTCCAGCTCCTTGTGCACCTGCCCTGTCTaGGCCTTGTCTGCTTCCATT +
Preference number: 2 (lower is better)
Translates to: MNILMTCGIMESTVSSSLCTCPV*ALSASI
Trigger: AATGGAAGCAGACAAGGCCCAGACAGGGCAGGTGCA...CAAGGAGCTGGACACAGTGGACTCCATGATCCCGCAGGTCATCAAGATGTTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp ATGAAGCGCTCCTGCTCCTCAAAAGCACGGATGACACTGACTCCCAGCAAGGTCCTGTGTCCAGCTCCTTaGAGAATCGGTTCACTAGGT +
Preference number: 2 (lower is better)
Translates to: MKRSCSSKARMTLTPSKVLCPAP*RIGSLG
Trigger: ACCTAGTGAACCGATTCTCCAAGGAGCTGGACACAG...GACCTTGCTGGGAGTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp GTCACTCTGGTGAATGAAGCGCTCCTGCTCCTCAAAAGCACGGATGACACTGACAACCAGACCCAAGGGTaGGATGATGACTGCGGCAAT +
Preference number: 2 (lower is better)
Translates to: VTLVNEALLLLKSTDDTDNQTQG*DDDCGN
Trigger: ATTGCCGCAGTCATCATCCCACCCTTGGGTCTGGTT...GTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCATTCACCAGAGTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp GCTCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACCCCCTTCTGCACACTCATaGTTCAGCTTGTCAGGCAAA +
Preference number: 2 (lower is better)
Translates to: AQRVHHTPELLLCPGQSPPSAHS*FSLSGK
Trigger: TTTGCCTGACAAGCTGAACCATGAGTGTGCAGAAGG...GGGTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp AAAGAAGTAAACCAGACCCAAGGGTGGGATGATGACTGCGGCAATGGGCGTGGCATAAGAACCCATCTCTaGGATCTTGCCGCCACTCAT +
Preference number: 2 (lower is better)
Translates to: KEVNQTQGWDDDCGNGRGIRTHL*DLAATH
Trigger: ATGAGTGGCGGCAAGATCTCAGAGATGGGTTCTTAT...GCCACGCCCATTGCCGCAGTCATCATCCCACCCTTGGGTCTGGTTTACTTCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp CTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCGACGGGAGATAAGAACCCATCTCTaGGATCTTGCCGCCACTCAT +
Preference number: 2 (lower is better)
Translates to: LMGDRRTLYSRSRCKRREIRTHL*DLAATH
Trigger: ATGAGTGGCGGCAAGATCTCAGAGATGGGTTCTTAT...CTCCCGTCGCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp ATATTGCTGCACCTTGCAAGATGCCCAAGGCCCCATAGACACTCAGCCGAAAATGTAGTTCCAGTACACTaGCAGCTGCACCTGCCCTGT +
Preference number: 2 (lower is better)
Translates to: ILLHLARCPRPHRHSAENVVPVH*QLHLPC
Trigger: ACAGGGCAGGTGCAGCTGTCAGTGTACTGGAACTAC...ATTTTCGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAGCAATAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp CTCCACCTTCTGCACACTCATGGTTCAGCTTGTCAGGCAAAGCTGACACAAAGCGGAACAAACCCAGGGTaGGAGATGATTTCCCAGCTC +
Preference number: 2 (lower is better)
Translates to: LHLLHTHGSACQAKLTQSGTNPG*EMISQL
Trigger: GAGCTGGGAAATCATCTCTCACCCTGGGTTTGTTCC...GCTTTGTGTCAGCTTTGCCTGACAAGCTGAACCATGAGTGTGCAGAAGGTGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp CAAAGAAACTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCAGGGTTGCTGGCTCATaGCTGGACTCTGGGATCCTG +
Preference number: 2 (lower is better)
Translates to: QRNSWVIAEHCIAGPGASRVAGS*LDSGIL
Trigger: CAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCT...GCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp ATGAAGCGCTCCTGCTCCTCAAAAGCACGGATGACACTGACTCCCAGCAAGGTCGTATCTGAAGTGGGGTaGATCTGTCTTCCAGCTTCT +
Preference number: 2 (lower is better)
Translates to: MKRSCSSKARMTLTPSKVVSEVG*ICLPAS
Trigger: AGAAGCTGGAAGACAGATGCACCCCACTTCAGATAC...GACCTTGCTGGGAGTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp CAAAGAAACTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCCAGCGTTGGCATAGGTaGGCAGGAACTCAGCGAAGG +
Preference number: 2 (lower is better)
Translates to: QRNSWVIAEHCIAGPGASQRWHR*AGTQRR
Trigger: CCTTCGCTGAGTTCCTGCGCACCTATGCCAACGCTG...GCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp GCTCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACCCGTAGCCAAATATTGCTaGACCTTGCAAGATGCCCAA +
Preference number: 2 (lower is better)
Translates to: AQRVHHTPELLLCPGQSPVAKYC*TLQDAQ
Trigger: TTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTAC...GGGTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp CTCCACCTTCTGCACACTCATGGTTCAGCTTGTCAGGCAAAGCTGACACAAAGCACCTGTTGGCCACAATaGTGGGGTAGTAGGCCTTCT +
Preference number: 2 (lower is better)
Translates to: LHLLHTHGSACQAKLTQSTCWPQ*WGSRPS
Trigger: AGAAGGCCTACTACCCCAGCATTGTGGCCAACAGGT...GCTTTGTGTCAGCTTTGCCTGACAAGCTGAACCATGAGTGTGCAGAAGGTGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp GTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTCCAGCACTGAGGCTGTaGCGGGAGATGACTGCAAAG +
Preference number: 2 (lower is better)
Translates to: VHLSSSFFKVRSRMKPNGPALRL*REMTAK
Trigger: CTTTGCAGTCATCTCCCGGCACAGCCTCAGTGCTGG...ACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp AATCGTGAGCACAGTACAGTCTTCAAACTGTGTCCGGATGGTGGACTGGATAAGCCAGCACTGAGGCTGTaGCGGGAGATGACTGCAAAG +
Preference number: 2 (lower is better)
Translates to: NREHSTVFKLCPDGGLDKPALRL*REMTAK
Trigger: CTTTGCAGTCATCTCCCGGCACAGCCTCAGTGCTGG...CTTATCCAGTCCACCATCCGGACACAGTTTGAAGACTGTACTGTGCTCACGATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp GTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTCTGAATGGGGCCAGGTaGTGGGTGGAGCTGTTTCCT +
Preference number: 2 (lower is better)
Translates to: VHLSSSFFKVRSRMKPNGLNGAR*WVELFP
Trigger: AGGAAACAGCTCCACCCAGCACCTGGCCCCATTCAG...ACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp TTTGGAGCTAGAGATATAGGCAACTGTAAGACACTGAACACAGGTGCTGGGAACCTCATGCCTGGACTCTaGGATCCTGGCCCTGCAGTC +
Preference number: 2 (lower is better)
Translates to: FGARDIGNCKTLNTGAGNLMPGL*DPGPAV
Trigger: GACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAG...GTTCCCAGCACCTGTGTTCAGTGTCTTACAGTTGCCTATATCTCTAGCTCCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CCA 90 bp GTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGGTTTCCAGGGTTGCTaGCTCATGCCTGGACTCTGG +
Preference number: 2 (lower is better)
Translates to: VHLSSSFFKVRSRMKPNGGFQGC*LMPGLW
Trigger: CCAGAGTCCAGGCATGAGCCAGCAACCCTGGAAACC...ACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp ATATTGCTGCACCTTGCAAGATGCCCAAGGCCCCATAGACACTCAGCCGAAAATGATACGGCAGGAGCATaGGTGAACTTTCAGGGTGCC +
Preference number: 2 (lower is better)
Translates to: ILLHLARCPRPHRHSAENDTAGA*VNFQGA
Trigger: GGCACCCTGAAAGTTCACCCATGCTCCTGCCGTATC...ATTTTCGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAGCAATAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp CCCCACACTCAGGTTCTCTCCACCTTCTGCACACTCATGGTTCAGCTTGTCAGGGCCAGTGCAGATACATaGTTGCACAGGAAAAGGAAG +
Preference number: 2 (lower is better)
Translates to: PHTQVLSTFCTLMVQLVRASADT*LHRKRK
Trigger: CTTCCTTTTCCTGTGCAACCATGTATCTGCACTGGC...CCTGACAAGCTGAACCATGAGTGTGCAGAAGGTGGAGAGAACCTGAGTGTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CAA 90 bp GTCCAAAAACCGACAGTAGGACGCAAGCCCAGGTATTTATGGACTTaGCCATTCTGCCTCACTGCCAGACTCCAGGCAGCTCTTACCTTT +
Preference number: 2 (lower is better)
Translates to: VQKPTVGRKPRYLWT*PFCLTARLQAALTF
Trigger: AAAGGTAAGAGCTGCCTGGAGTCTGGCAGTGAGGCAGAATGGCAAAGTCCATAAATACCTGGGCTTGCGTCCTACTGTCGGTTTTTGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR TCA 90 bp GTCTTTGATACCAGATTCTTGCCCGTGGGCACCATCCCTTCTGCTCTTGACTTTATCCGTAGACGTGGCTaGAGAGACATGAGGCAGTGT +
Preference number: 2 (lower is better)
Translates to: VFDTRFLPVGTIPSALDFIRRRG*RDMRQC
Trigger: ACACTGCCTCATGTCTCTTCAGCCACGTCTACGGAT...AAAGTCAAGAGCAGAAGGGATGGTGCCCACGGGCAAGAATCTGGTATCAAAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR TCA 90 bp GTCTTTGATACCAGATTCTTGCCCGTGGGCACCATCCCTTCTGCTCTTGACTTTACCTTATGTGAGGAGTaGGCCCTCCCCAGCTTTGAA +
Preference number: 2 (lower is better)
Translates to: VFDTRFLPVGTIPSALDFTLCEE*ALPSFE
Trigger: TTCAAAGCTGGGGAGGGCTCACTCCTCACATAAGGT...AAAGTCAAGAGCAGAAGGGATGGTGCCCACGGGCAAGAATCTGGTATCAAAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR TCA 90 bp TGCCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTATAAGAACCCATCTCTaGGATCTTGCCGCCACTCAT +
Preference number: 2 (lower is better)
Translates to: CQRPDVYLKWGASVFQLLIRTHL*DLAATH
Trigger: ATGAGTGGCGGCAAGATCTCAGAGATGGGTTCTTAT...AAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp GTTGACCCCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGGAACAAGTAGTTCCAGTACACTaGCAGCTGCACCTGCCCTGT +
Preference number: 2 (lower is better)
Translates to: VDPINDDLPFCRLIDPEQVVPVH*QLHLPC
Trigger: ACAGGGCAGGTGCAGCTGTCAGTGTACTGGAACTAC...TTGTTCCGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp GAGCTCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACCATCAGAATACTGACTaGAAGGGTCCAAGTTCATGC +
Preference number: 2 (lower is better)
Translates to: ELRGCTTLPNFSFVQDNHHQNTD*KGPSSC
Trigger: GCATGAACTTGGACCCTTTCAGTCAGTATTCTGATG...GTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp AGGGTCCAAGTTCATGCGGAGGGAACCCGAGAACAAAACAGGATCCTGTGGAATAATATTGCTGCACCTTaGAAGATGCCCAAGGCCCCA +
Preference number: 2 (lower is better)
Translates to: RVQVHAEGTREQNRILWNNIAAP*KMPKAP
Trigger: TGGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATT...ATTCCACAGGATCCTGTTTTGTTCTCGGGTTCCCTCCGCATGAACTTGGACCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCACAGCATCCTTGGCCATaGTGTAGAAGATGCCTCTTT +
Preference number: 2 (lower is better)
Translates to: PEARRVSEVGCICLPASSQHPWP*CRRCLF
Trigger: AAAGAGGCATCTTCTACAGCATGGCCAAGGATGCTG...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp GTTGACCCCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGGAACAAGCTATGCTGCTGTGTTaGTGGCTGGTATCCCCACTC +
Preference number: 2 (lower is better)
Translates to: VDPINDDLPFCRLIDPEQAMLLC*WLVSPL
Trigger: GAGTGGGGATACCAGCCAGCAACACAGCAGCATAGC...TTGTTCCGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000130671.8
3UTR-3UTR CCA 90 bp TTTGGAGCTAGAGATATAGGCAACTGTAAGACACTGAACACAGGTGCTGGGAACGGTTTCCAGGGTTGCTaGCTCATGCCTGGACTCTGG +
Preference number: 2 (lower is better)
Translates to: FGARDIGNCKTLNTGAGNGFQGC*LMPGLW
Trigger: CCAGAGTCCAGGCATGAGCCAGCAACCCTGGAAACC...GTTCCCAGCACCTGTGTTCAGTGTCTTACAGTTGCCTATATCTCTAGCTCCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CCA 90 bp ACAGTACAGTCTTCAAACTGTGTCCGGATGGTGGACTGGATAAGGTTATCTGTCCTCACACGCTGCTTCTaGCCCCCTGACAGGTTCACA +
Preference number: 2 (lower is better)
Translates to: TVQSSNCVRMVDWIRLSVLTRCF*PPDRFT
Trigger: TGTGAACCTGTCAGGGGGCCAGAAGCAGCGTGTGAG...GACAGATAACCTTATCCAGTCCACCATCCGGACACAGTTTGAAGACTGTACTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp GTTGACCCCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGGAACAATGCTGTGTTGCTGGCTaGTATCCCCACTGTGGGAAG +
Preference number: 2 (lower is better)
Translates to: VDPINDDLPFCRLIDPEQCCVAG*YPHCGK
Trigger: CTTCCCACAGTGGGGATACCAGCCAGCAACACAGCA...TTGTTCCGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp GTCGCTGCCCCACACTCAGGTTCTCTCCACCTTCTGCACACTCATGGTTCAGCTGCTCAAAGAAACTCATaGGTGATCGCAGAACATTGT +
Preference number: 2 (lower is better)
Translates to: VAAPHSGSLHLLHTHGSAAQRNS*VIAEHC
Trigger: ACAATGTTCTGCGATCACCCATGAGTTTCTTTGAGC...AGCTGAACCATGAGTGTGCAGAAGGTGGAGAGAACCTGAGTGTGGGGCAGCGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCATCACTAGGTTCCCACTaGGTGTACGCTCAAAGAAAC +
Preference number: 2 (lower is better)
Translates to: PEARRVSEVGCICLPASSSLGSH*VYAQRN
Trigger: GTTTCTTTGAGCGTACACCCAGTGGGAACCTAGTGA...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp CAAAGAAACTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCTGCTGTGTTGCTGGCTaGTATCCCCACTCTGCAGGT +
Preference number: 2 (lower is better)
Translates to: QRNSWVIAEHCIAGPGASCCVAG*YPHSAG
Trigger: ACCTGCAGAGTGGGGATACCAGCCAGCAACACAGCA...GCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130671.8
3UTR CAA 90 bp ATGATGACAGCTCCAATGACACTGAAGAGTGAACCCATGAACATCTaGATGACCTGCGGGATCATGGAGTCCACTGTGTCCAGCTCCTTG +
Preference number: 2 (lower is better)
Translates to: MMTAPMTLKSEPMNI*MTCGIMESTVSSSL
Trigger: CAAGGAGCTGGACACAGTGGACTCCATGATCCCGCAGGTCATCAAGATGTTCATGGGTTCACTCTTCAGTGTCATTGGAGCTGTCATCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp AGGTTATCTGTCTCTAGGTCCACAGCTGCGGTAGCCTCGTCCAACACTAGAATCCCTTCCCTGAACCACTaGCACCATTCTTACTGTCAT +
Preference number: 2 (lower is better)
Translates to: RLSVSRSTAAVASSNTRIPSLNH*HHSYCH
Trigger: ATGACAGTAAGAATGGTGTCAGTGGTTCAGGGAAGG...GATTCTAGTGTTGGACGAGGCTACCGCAGCTGTGGACCTAGAGACAGATAACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp AAGGGTCCAAGTTCATGCGGAGGGAACCCGAGAACAAAACAGGATCCTGTGGAACCTTCCCTGAACCACTaGCACCATTCTTACTGTCAT +
Preference number: 2 (lower is better)
Translates to: KGPSSCGGNPRTKQDPVEPSLNH*HHSYCH
Trigger: ATGACAGTAAGAATGGTGTCAGTGGTTCAGGGAAGG...TTCCACAGGATCCTGTTTTGTTCTCGGGTTCCCTCCGCATGAACTTGGACCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp AAGAAACTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCGACAGGAATGGAGAAGGTaGTGCCATTCAGTGTGGGAG +
Preference number: 2 (lower is better)
Translates to: KKLMGDRRTLYSRSRCKRQEWRR*CHSVWE
Trigger: CTCCCACACTGAATGGCATCACCTTCTCCATTCCTG...TCGCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000130671.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp GGCGATGTTGACCCCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGGTATCTGAAGTGGGGTaGATCTGTCTTCCAGCTTCT +
Preference number: 2 (lower is better)
Translates to: GDVDPINDDLPFCRLIDPVSEVG*ICLPAS
Trigger: AGAAGCTGGAAGACAGATGCACCCCACTTCAGATAC...CGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAACATCGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp GTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGGCAGCTCTTACCTTTaGCCTCCCCCATCTCTTTCT +
Preference number: 2 (lower is better)
Translates to: VHLSSSFFKVRSRMKPNGGSSYL*PPPSLS
Trigger: AGAAAGAGATGGGGGAGGGCAAAGGTAAGAGCTGCC...ACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR GCA 90 bp GCTCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACCCACAGGCTTCCATAACTaGCTTGTAGTAATTTTCCTG +
Preference number: 2 (lower is better)
Translates to: AQRVHHTPELLLCPGQSPTGFHN*LVVIFL
Trigger: CAGGAAAATTACTACAAGGCAGTTATGGAAGCCTGT...GGGTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp CTGCACCTTGCAAGATGCCCAAGGCCCCATAGACACTCAGCCGAAAATTCCTGTGTAGCCAAATATTGCTaGACCTTGCAAGATGCCCAA +
Preference number: 2 (lower is better)
Translates to: LHLARCPRPHRHSAENSCVAKYC*TLQDAQ
Trigger: TTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTAC...ACAGGAATTTTCGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp GGCGATGTTGACCCCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGAACATCTTGATGACCTaGGGGATCATGGAGTCCACT +
Preference number: 2 (lower is better)
Translates to: GDVDPINDDLPFCRLIDPNILMT*GIMEST
Trigger: AGTGGACTCCATGATCCCGCAGGTCATCAAGATGTT...CGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAACATCGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp TTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTGGTCCTGCTCAGCGTTaGCATAGGTGCGCAGGAACT +
Preference number: 2 (lower is better)
Translates to: FFKVRSRMKPNGDRRLSIGPAQR*HRCAGT
Trigger: AGTTCCTGCGCACCTATGCCAACGCTGAGCAGGACC...AATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp AAAGAAGTAAACCAGACCCAAGGGTGGGATGATGACTGCGGCAATGGGCGTGGCGCTCAAAGAAACTCATaGGTGATCGCAGAACATTGT +
Preference number: 2 (lower is better)
Translates to: KEVNQTQGWDDDCGNGRGAQRNS*VIAEHC
Trigger: ACAATGTTCTGCGATCACCCATGAGTTTCTTTGAGC...GCCACGCCCATTGCCGCAGTCATCATCCCACCCTTGGGTCTGGTTTACTTCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp AATCGTGAGCACAGTACAGTCTTCAAACTGTGTCCGGATGGTGGACTGGATAAGAACCAGACCCAAGGGTaGGATGATGACTGCGGCAAT +
Preference number: 2 (lower is better)
Translates to: NREHSTVFKLCPDGGLDKNQTQG*DDDCGN
Trigger: ATTGCCGCAGTCATCATCCCACCCTTGGGTCTGGTT...CTTATCCAGTCCACCATCCGGACACAGTTTGAAGACTGTACTGTGCTCACGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp TCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACCCGCCAAAACAGGATCCTGTaGAATGATGGTGATCTTGAA +
Preference number: 2 (lower is better)
Translates to: SEGAPHSRTSPLSRTITRQNRIL*NDGDLE
Trigger: TTCAAGATCACCATCATTCCACAGGATCCTGTTTTG...GCGGGTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp TTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTAGGTGTAAGTCCTTGTaGAGGGAGTGTTGCCTGGCC +
Preference number: 2 (lower is better)
Translates to: FFKVRSRMKPNGDRRLSIRCKSL*RECCLA
Trigger: GGCCAGGCAACACTCCCTTCACAAGGACTTACACCT...AATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR TCA 90 bp GTTCTTGCTAACCATGGGGGTCTCTCTTTGGTCTGTAACTCACACAACCTAGAGAGCCCTCCCCAGCTTTaGACAGGAAGAAACAGAAAG +
Preference number: 2 (lower is better)
Translates to: VLANHGGLSLVCNSHNLESPPQL*TGRNRK
Trigger: CTTTCTGTTTCTTCCTGTTCAAAGCTGGGGAGGGCT...CTCTAGGTTGTGTGAGTTACAGACCAAAGAGAGACCCCCATGGTTAGCAAGAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR TCA 90 bp TTGACCCCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGGAACAAAGGTCTCATTGAAGTGTaGGTACACAGGGGAACGGCT +
Preference number: 2 (lower is better)
Translates to: LTPSMMISPSADSLIRNKGLIEV*VHRGTA
Trigger: AGCCGTTCCCCTGTGTACTCACACTTCAATGAGACC...TTTGTTCCGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp CCAAATGGTGACAGACGCCTAAGTATTTTGCTTCCTTTTAGTTTGGTTTCGTTTGAACTCTACACGGCCTaGATGGGGCCAGGTGCTGGG +
Preference number: 2 (lower is better)
Translates to: PNGDRRLSILLPFSLVSFELYTA*MGPGAG
Trigger: CCCAGCACCTGGCCCCATTCAGGCCGTGTAGAGTTC...AAACGAAACCAAACTAAAAGGAAGCAAAATACTTAGGCGTCTGTCACCATTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp TTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTGCTATGCTGCTGTGTTaGTGGCTGGTATCCCCACTG +
Preference number: 2 (lower is better)
Translates to: FFKVRSRMKPNGDRRLSIAMLLC*WLVSPL
Trigger: CAGTGGGGATACCAGCCAGCAACACAGCAGCATAGC...AATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp CGGATGACACTGACTCCCAGCAAGGTCTCATTGAAGTGTGAGTACACAGGGGAAGTAGCCAAATATTGCTaGACCTTGCAAGATGCCCAA +
Preference number: 2 (lower is better)
Translates to: RMTLTPSKVSLKCEYTGEVAKYC*TLQDAQ
Trigger: TTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTAC...TTCCCCTGTGTACTCACACTTCAATGAGACCTTGCTGGGAGTCAGTGTCATCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp CCAAATGGTGACAGACGCCTAAGTATTTTGCTTCCTTTTAGTTTGGTTTCGTTTGGGTGGGATGATGACTaGGGCAATGGGCGTGGCCAG +
Preference number: 2 (lower is better)
Translates to: PNGDRRLSILLPFSLVSFGWDDD*GNGRGQ
Trigger: CTGGCCACGCCCATTGCCGCAGTCATCATCCCACCC...AAACGAAACCAAACTAAAAGGAAGCAAAATACTTAGGCGTCTGTCACCATTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp CCTCATTGGATATGCCAGAGACCAGCTCACACCAAGCCAGCATCCTTGGCCATGATGGTGACATTTATGTaGTTGAGAACCAAGTCCAAG +
Preference number: 2 (lower is better)
Translates to: PHWICQRPAHTKPASLAMMVTFM*LRTKSK
Trigger: CTTGGACTTGGTTCTCAAGCACATAAATGTCACCAT...CATGGCCAAGGATGCTGGCTTGGTGTGAGCTGGTCTCTGGCATATCCAATGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp GTTCTTGCTAACCATGGGGGTCTCTCTTTGGTCTGTAACTCACACAACCTAGAGAACTCTGGCTGTCTTTaGTACCAGATTCTTGCCCGT +
Preference number: 2 (lower is better)
Translates to: VLANHGGLSLVCNSHNLENSGCL*YQILAR
Trigger: ACGGGCAAGAATCTGGTATCAAAGACAGCCAGAGTT...CTCTAGGTTGTGTGAGTTACAGACCAAAGAGAGACCCCCATGGTTAGCAAGAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR TCA 90 bp TTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTGGTCTCATTGAAGTGTaGGTACACAGGGGAACGGCT +
Preference number: 2 (lower is better)
Translates to: FFKVRSRMKPNGDRRLSIGLIEV*VHRGTA
Trigger: AGCCGTTCCCCTGTGTACTCACACTTCAATGAGACC...AATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp TTCTCTGGGACTGACATTAGAGCCAAAATTCAAAGCAAGTATGAACTGTGGCTGGTAGGTTTCCAGGGTTaGTGGCTCATGCCTGGACTC +
Preference number: 2 (lower is better)
Translates to: FSGTDIRAKIQSKYELWLVGFQG*WLMPGL
Trigger: GAGTCCAGGCATGAGCCAGCAACCCTGGAAACCTAC...CAGCCACAGTTCATACTTGCTTTGAATTTTGGCTCTAATGTCAGTCCCAGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR GCA 90 bp GTTGACCCCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGGAACAAAACATCTTGATGACCTaGGGGATCATGGAGTCCACT +
Preference number: 2 (lower is better)
Translates to: VDPINDDLPFCRLIDPEQNILMT*GIMEST
Trigger: AGTGGACTCCATGATCCCGCAGGTCATCAAGATGTT...TTGTTCCGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp TTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTACCTGTTGGCCACAATaGTGGGGTAGTAGGCCTTCT +
Preference number: 2 (lower is better)
Translates to: FFKVRSRMKPNGDRRLSITCWPQ*WGSRPS
Trigger: AGAAGGCCTACTACCCCAGCATTGTGGCCAACAGGT...AATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp AGAGGCCGGAAACTCAAGTTACAGATAGTTCTGAGCTGTCCAATATGGGTGCAATGCATGAAGACCAGATaGCAGGAAGGGGACATCACT +
Preference number: 2 (lower is better)
Translates to: RGRKLKLQIVLSCPIWVQCMKTR*QEGDIT
Trigger: AGTGATGTCCCCTTCCTGCCATCTGGTCTTCATGCA...TTGCACCCATATTGGACAGCTCAGAACTATCTGTAACTTGAGTTTCCGGCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CCA 90 bp GTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTTCACTAGGTTCCCACTaGGTGTACGCTCAAAGAAAC +
Preference number: 2 (lower is better)
Translates to: VHLSSSFFKVRSRMKPNGSLGSH*VYAQRN
Trigger: GTTTCTTTGAGCGTACACCCAGTGGGAACCTAGTGA...ACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CAA 90 bp AACTGTGGCTGGCATCAAGTTCTTGCTAACCATGGGGGTCTCTCTTaGGTCTGTAACTCACACAACCTAGAGGACCACTTTGAAGTATTC +
Preference number: 2 (lower is better)
Translates to: NCGWHQVLANHGGLS*VCNSHNLEDHFEVF
Trigger: GAATACTTCAAAGTGGTCCTCTAGGTTGTGTGAGTTACAGACCAAAGAGAGACCCCCATGGTTAGCAAGAACTTGATGCCAGCCACAGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR GCA 90 bp TTCTCTGGGACTGACATTAGAGCCAAAATTCAAAGCAAGTATGAACTGTGGCTGAGAGCTGGGCATGGCTaGTCCCTGAATCTAGTACCT +
Preference number: 2 (lower is better)
Translates to: FSGTDIRAKIQSKYELWLRAGHG*SLNLVP
Trigger: AGGTACTAGATTCAGGGAGCAGCCATGCCCAGCTCT...CAGCCACAGTTCATACTTGCTTTGAATTTTGGCTCTAATGTCAGTCCCAGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR GCA 90 bp CGGATGACACTGACTCCCAGCAAGGTCTCATTGAAGTGTGAGTACACAGGGGAAACAGGCTTCCATAACTaGCTTGTAGTAATTTTCCTG +
Preference number: 2 (lower is better)
Translates to: RMTLTPSKVSLKCEYTGETGFHN*LVVIFL
Trigger: CAGGAAAATTACTACAAGGCAGTTATGGAAGCCTGT...TTCCCCTGTGTACTCACACTTCAATGAGACCTTGCTGGGAGTCAGTGTCATCCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp AGGGTCCAAGTTCATGCGGAGGGAACCCGAGAACAAAACAGGATCCTGTGGAATATGGTGACATTTATGTaGTTGAGAACCAAGTCCAAG +
Preference number: 2 (lower is better)
Translates to: RVQVHAEGTREQNRILWNMVTFM*LRTKSK
Trigger: CTTGGACTTGGTTCTCAAGCACATAAATGTCACCAT...ATTCCACAGGATCCTGTTTTGTTCTCGGGTTCCCTCCGCATGAACTTGGACCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp TTGACCCCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGGAACAAAGATGATCTCCCCTTCTaGAGACTCATTGATCCGGAA +
Preference number: 2 (lower is better)
Translates to: LTPSMMISPSADSLIRNKDDLPF*RLIDPE
Trigger: TTCCGGATCAATGAGTCTGCAGAAGGGGAGATCATC...TTTGTTCCGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp CCAAATGGTGACAGACGCCTAAGTATTTTGCTTCCTTTTAGTTTGGTTTCGTTTGGTTTCCAGGGTTGCTaGCTCATGCCTGGACTCTGG +
Preference number: 2 (lower is better)
Translates to: PNGDRRLSILLPFSLVSFGFQGC*LMPGLW
Trigger: CCAGAGTCCAGGCATGAGCCAGCAACCCTGGAAACC...AAACGAAACCAAACTAAAAGGAAGCAAAATACTTAGGCGTCTGTCACCATTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp AGGGTCCAAGTTCATGCGGAGGGAACCCGAGAACAAAACAGGATCCTGTGGAATAGTGTGGCTTGTGTTTaGTCACTAGTATGTTTAGCT +
Preference number: 2 (lower is better)
Translates to: RVQVHAEGTREQNRILWNSVACV*SLVCLA
Trigger: AGCTAAACATACTAGTGACCAAACACAAGCCACACT...ATTCCACAGGATCCTGTTTTGTTCTCGGGTTCCCTCCGCATGAACTTGGACCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp ATGAACATCTTGATGACCTGCGGGATCATGGAGTCCACTGTGTCCAGCTCCTTGAGTGTGGCTTGTGTTTaGTCACTAGTATGTTTAGCT +
Preference number: 2 (lower is better)
Translates to: MNILMTCGIMESTVSSSLSVACV*SLVCLA
Trigger: AGCTAAACATACTAGTGACCAAACACAAGCCACACT...CAAGGAGCTGGACACAGTGGACTCCATGATCCCGCAGGTCATCAAGATGTTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCACCTTTTTGTTCATTTTaGTTCCCATGTTTCAACTGC +
Preference number: 2 (lower is better)
Translates to: PEARRVSEVGCICLPASSPFCSF*FPCFNC
Trigger: GCAGTTGAAACATGGGAACCAAAATGAACAAAAAGG...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CCA 90 bp AGAGGCCGGAAACTCAAGTTACAGATAGTTCTGAGCTGTCCAATATGGGTGCAAACCTTATGCTCTCACTaGACAAGGAGCTCAGTGACT +
Preference number: 2 (lower is better)
Translates to: RGRKLKLQIVLSCPIWVQTLCSH*TRSSVT
Trigger: AGTCACTGAGCTCCTTGTCCAGTGAGAGCATAAGGT...TTGCACCCATATTGGACAGCTCAGAACTATCTGTAACTTGAGTTTCCGGCCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR TCA 90 bp TGGCCCTTTGGAGCTAGAGATATAGGCAACTGTAAGACACTGAACACAGGTGCTAATTCAAAGCAAGTATaGACTGTGGCTGGCATCAAG +
Preference number: 2 (lower is better)
Translates to: WPFGARDIGNCKTLNTGANSKQV*TVAGIK
Trigger: CTTGATGCCAGCCACAGTTCATACTTGCTTTGAATT...AGCACCTGTGTTCAGTGTCTTACAGTTGCCTATATCTCTAGCTCCAAAGGGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR TCA 90 bp CCAAATGGTGACAGACGCCTAAGTATTTTGCTTCCTTTTAGTTTGGTTTCGTTTGGTCACTCTGGTGAATaGAGCGCTCCTGCTCCTCAA +
Preference number: 2 (lower is better)
Translates to: PNGDRRLSILLPFSLVSFGHSGE*SAPAPQ
Trigger: TTGAGGAGCAGGAGCGCTTCATTCACCAGAGTGACC...AAACGAAACCAAACTAAAAGGAAGCAAAATACTTAGGCGTCTGTCACCATTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp CCAAATGGTGACAGACGCCTAAGTATTTTGCTTCCTTTTAGTTTGGTTTCGTTTTTCAGGTCACTCTGGTaGATGAAGCGCTCCTGCTCC +
Preference number: 2 (lower is better)
Translates to: PNGDRRLSILLPFSLVSFFRSLW*MKRSCS
Trigger: GGAGCAGGAGCGCTTCATTCACCAGAGTGACCTGAA...AAACGAAACCAAACTAAAAGGAAGCAAAATACTTAGGCGTCTGTCACCATTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR GCA 90 bp ATATTGCTGCACCTTGCAAGATGCCCAAGGCCCCATAGACACTCAGCCGAAAATACAGGCTTCCATAACTaGCTTGTAGTAATTTTCCTG +
Preference number: 2 (lower is better)
Translates to: ILLHLARCPRPHRHSAENTGFHN*LVVIFL
Trigger: CAGGAAAATTACTACAAGGCAGTTATGGAAGCCTGT...ATTTTCGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAGCAATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp ATGCACTCTTCTGTAACCAACACGACTATAGGTGACAGAGAGCTGGCAAGGCCAAGTGTGGCTTGTGTTTaGTCACTAGTATGTTTAGCT +
Preference number: 2 (lower is better)
Translates to: MHSSVTNTTIGDRELARPSVACV*SLVCLA
Trigger: AGCTAAACATACTAGTGACCAAACACAAGCCACACT...TGGCCTTGCCAGCTCTCTGTCACCTATAGTCGTGTTGGTTACAGAAGAGTGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CCA 90 bp ATAGAACCTCTGCACAAAGAAGTAAACCAGACCCAAGGGTGGGATGATGACTGCGCTCAAAGAAACTCATaGGTGATCGCAGAACATTGT +
Preference number: 2 (lower is better)
Translates to: IEPLHKEVNQTQGWDDDCAQRNS*VIAEHC
Trigger: ACAATGTTCTGCGATCACCCATGAGTTTCTTTGAGC...GCAGTCATCATCCCACCCTTGGGTCTGGTTTACTTCTTTGTGCAGAGGTTCTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR TCA 90 bp TTTGGAGCTAGAGATATAGGCAACTGTAAGACACTGAACACAGGTGCTGGGAACCATCCCTTCTGCTCTTaGCTTTTGCTGCTTATAACT +
Preference number: 2 (lower is better)
Translates to: FGARDIGNCKTLNTGAGNHPFCS*LLLLIT
Trigger: AGTTATAAGCAGCAAAAGTCAAGAGCAGAAGGGATG...GTTCCCAGCACCTGTGTTCAGTGTCTTACAGTTGCCTATATCTCTAGCTCCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CCA 90 bp AATCGTGAGCACAGTACAGTCTTCAAACTGTGTCCGGATGGTGGACTGGATAAGCAAAACAGGATCCTGTaGAATGATGGTGATCTTGAA +
Preference number: 2 (lower is better)
Translates to: NREHSTVFKLCPDGGLDKQNRIL*NDGDLE
Trigger: TTCAAGATCACCATCATTCCACAGGATCCTGTTTTG...CTTATCCAGTCCACCATCCGGACACAGTTTGAAGACTGTACTGTGCTCACGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp TTTGGAGCTAGAGATATAGGCAACTGTAAGACACTGAACACAGGTGCTGGGAACACTGATATTTGTGAATaGTTCTCTTCTGGCCCTATA +
Preference number: 2 (lower is better)
Translates to: FGARDIGNCKTLNTGAGNTDICE*FSSGPI
Trigger: TATAGGGCCAGAAGAGAACCATTCACAAATATCAGT...GTTCCCAGCACCTGTGTTCAGTGTCTTACAGTTGCCTATATCTCTAGCTCCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CCA 90 bp CCAAATGGTGACAGACGCCTAAGTATTTTGCTTCCTTTTAGTTTGGTTTCGTTTAGTGTGGCTTGTGTTTaGTCACTAGTATGTTTAGCT +
Preference number: 2 (lower is better)
Translates to: PNGDRRLSILLPFSLVSFSVACV*SLVCLA
Trigger: AGCTAAACATACTAGTGACCAAACACAAGCCACACT...AAACGAAACCAAACTAAAAGGAAGCAAAATACTTAGGCGTCTGTCACCATTTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CCA 90 bp CCAAATGGTGACAGACGCCTAAGTATTTTGCTTCCTTTTAGTTTGGTTTCGTTTCAAAACAGGATCCTGTaGAATGATGGTGATCTTGAA +
Preference number: 2 (lower is better)
Translates to: PNGDRRLSILLPFSLVSFQNRIL*NDGDLE
Trigger: TTCAAGATCACCATCATTCCACAGGATCCTGTTTTG...AAACGAAACCAAACTAAAAGGAAGCAAAATACTTAGGCGTCTGTCACCATTTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 72 bp CCTCCGAGGCCAGGTCCTGCTCAGCGTTGGCATAGGTaGGCAGGAACTCAGCGAAGGCCCCATCCCGGTCTA +
Preference number: 3 (lower is better)
Translates to: PPRPGPAQRWHR*AGTQRRPHPGL
Trigger: TAGACCGGGATGGGGCCTTCGCTGAGTTCCTGCGCACCTATGCCAACGCTGAGCAGGACCTGGCCTCGGAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp GGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATCTTGAAGCGCAGGTaGTGCAGGCCGATCTTGGCG +
Preference number: 3 (lower is better)
Translates to: GLLAHAWTLGSWPCSPHWILKRR*CRPILA
Trigger: CGCCAAGATCGGCCTGCACAACCTGCGCTTCAAGAT...CCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CCA 72 bp TACTGTCATCCTCCGAGGCCAGGTCCTGCTCAGCGTTaGCATAGGTGCGCAGGAACTCAGCGAAGGCCCCAT +
Preference number: 3 (lower is better)
Translates to: YCHPPRPGPAQR*HRCAGTQRRPH
Trigger: ATGGGGCCTTCGCTGAGTTCCTGCGCACCTATGCCAACGCTGAGCAGGACCTGGCCTCGGAGGATGACAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CCA 72 bp GGGTTTTGTCTGGGAAGCGTAGGTTTCCAGGGTTGCTaGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCA +
Preference number: 3 (lower is better)
Translates to: GFCLGSVGFQGC*LMPGLWDPGPA
Trigger: TGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCTGGAAACCTACGCTTCCCAGACAAAACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp GGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGCCAACACTAGAATCTTaGTCTTCCTCAGCAGAGCCC +
Preference number: 3 (lower is better)
Translates to: GLLAHAWTLGSWPCSPHWPTLES*SSSAEP
Trigger: GGGCTCTGCTGAGGAAGACAAAGATTCTAGTGTTGG...CCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp GCTCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACCCACATGTCCCTCCACCTaGTCCATCTCAGCCAGCAGG +
Preference number: 3 (lower is better)
Translates to: AQRVHHTPELLLCPGQSPTCPST*SISASR
Trigger: CCTGCTGGCTGAGATGGACAAGGTGGAGGGACATGT...GGGTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000130671.8
ENSMUST00000147759.8
3UTR TCA 72 bp ATACCTCAGGCAGTAATCCCGGAACTCTACACGGCCTaGATGGGGCCAGGTGCTGGGTGGAGCTGTTTCCTG +
Preference number: 3 (lower is better)
Translates to: IPQAVIPELYTA*MGPGAGWSCFL
Trigger: CAGGAAACAGCTCCACCCAGCACCTGGCCCCATTCAGGCCGTGTAGAGTTCCGGGATTACTGCCTGAGGTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 72 bp GAAGGGAGTGTTGCCTGGCCGGGTTCCAAGCCTGTCTaGCTAGGTCCCTTCACAAGGCTGTGTCTTAAGCAG +
Preference number: 3 (lower is better)
Translates to: EGSVAWPGSKPV*LGPFTRLCLKQ
Trigger: CTGCTTAAGACACAGCCTTGTGAAGGGACCTAGGCAGACAGGCTTGGAACCCGGCCAGGCAACACTCCCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR GCA 72 bp AATCCCGGAACTCTACACGGCCTGAATGGGGCCAGGTaGTGGGTGGAGCTGTTTCCTGGATTTGCCAAGGAG +
Preference number: 3 (lower is better)
Translates to: NPGTLHGLNGAR*WVELFPGFAKE
Trigger: CTCCTTGGCAAATCCAGGAAACAGCTCCACCCAGCACCTGGCCCCATTCAGGCCGTGTAGAGTTCCGGGATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CCA 72 bp GCTATGCTGCTGTGTTGCTGGCTGGTATCCCCACTGTaGGAAGACGAGTTGCTGAGATGCCTCTGCAGGTGC +
Preference number: 3 (lower is better)
Translates to: AMLLCCWLVSPL*EDELLRCLCRC
Trigger: GCACCTGCAGAGGCATCTCAGCAACTCGTCTTCCCACAGTGGGGATACCAGCCAGCAACACAGCAGCATAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CCA 72 bp CCAGCCTTCTGCAGTTCGGCTATGCTGCTGTGTTGCTaGCTGGTATCCCCACTGTGGGAAGACGAGTTGCTG +
Preference number: 3 (lower is better)
Translates to: PAFCSSAMLLCC*LVSPLWEDELL
Trigger: CAGCAACTCGTCTTCCCACAGTGGGGATACCAGCCAGCAACACAGCAGCATAGCCGAACTGCAGAAGGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp GCGGCAATGGGCGTGGCCAGTAGGATGATGATGACAGCTCCAATGACACTGAAGGCCCTGCAGTCCTCATaGGATATGCCAGAGACCAGC +
Preference number: 3 (lower is better)
Translates to: AAMGVASRMMMTAPMTLKALQSS*DMPETS
Trigger: GCTGGTCTCTGGCATATCCAATGAGGACTGCAGGGC...CTTCAGTGTCATTGGAGCTGTCATCATCATCCTACTGGCCACGCCCATTGCCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp GGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATGAGGCAGTGTGGCTaGTGTTTGGTCACTAGTATG +
Preference number: 3 (lower is better)
Translates to: GLLAHAWTLGSWPCSPHWMRQCG*CLVTSM
Trigger: CATACTAGTGACCAAACACAAGCCACACTGCCTCAT...CCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp TCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACCCGCTTGTGCAGGCCGATCTaGGCGATGTTGACCCCATCA +
Preference number: 3 (lower is better)
Translates to: SEGAPHSRTSPLSRTITRLCRPI*AMLTPS
Trigger: TGATGGGGTCAACATCGCCAAGATCGGCCTGCACAA...GCGGGTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR TCA 72 bp AGCTGTGCTGAACGCAGGGGACAGTGTCAGCGTGCATaGAGACCAGATGGCAGGAAGGGGACATCACTGACA +
Preference number: 3 (lower is better)
Translates to: SCAERRGQCQRA*RPDGRKGTSLT
Trigger: TGTCAGTGATGTCCCCTTCCTGCCATCTGGTCTTCATGCACGCTGACACTGTCCCCTGCGTTCAGCACAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR GCA 72 bp TTTGGGTTTTGTCTGGGAAGCGTAGGTTTCCAGGGTTaGTGGCTCATGCCTGGACTCTGGGATCCTGGCCCT +
Preference number: 3 (lower is better)
Translates to: FGFCLGSVGFQG*WLMPGLWDPGP
Trigger: AGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCTGGAAACCTACGCTTCCCAGACAAAACCCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 72 bp AGTAGGCCCATGGGACCAACCACCTTCTCAAAGATGTaGTTCCCAACATGTGCATCCACAGCCGAGAGGGGG +
Preference number: 3 (lower is better)
Translates to: SRPMGPTTFSKM*FPTCASTAERG
Trigger: CCCCCTCTCGGCTGTGGATGCACATGTTGGGAAGCACATCTTTGAGAAGGTGGTTGGTCCCATGGGCCTACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 72 bp GCCCCCGATGGACACAGCCATGGAGTAGCCAAATATTaGTGCACCTTGCAAGATGCCCAAGGCCCCATAGAC +
Preference number: 3 (lower is better)
Translates to: APDGHSHGVAKY*CTLQDAQGPID
Trigger: GTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTGTCCATCGGGGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 72 bp ATAGCAGGTCCAGGTGCAAGCGACGGGAGGCAAAGATaGCCCCGATGGACACAGCCATGGAGTAGCCAAATA +
Preference number: 3 (lower is better)
Translates to: IAGPGASDGRQR*PRWTQPWSSQI
Trigger: TATTTGGCTACTCCATGGCTGTGTCCATCGGGGGCATCTTTGCCTCCCGTCGCTTGCACCTGGACCTGCTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 72 bp ATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTaGAAGCGACGGGAGGCAAAGATGCCCCCGATGGAC +
Preference number: 3 (lower is better)
Translates to: MGDRRTLYSRSR*KRREAKMPPMD
Trigger: GTCCATCGGGGGCATCTTTGCCTCCCGTCGCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 72 bp ACACCAAGCCAGCATCCTTGGCCATGCTGTAGAAGATaGCTCTTTGCTGCAGGAGCTCAGAGGGTGCACCAC +
Preference number: 3 (lower is better)
Translates to: TPSQHPWPCCRR*LFAAGAQRVHH
Trigger: GTGGTGCACCCTCTGAGCTCCTGCAGCAAAGAGGCATCTTCTACAGCATGGCCAAGGATGCTGGCTTGGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 72 bp ACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATATaGCAGAGACCAGCTCACACCAAGCCAGCATCCTTG +
Preference number: 3 (lower is better)
Translates to: TLGSWPCSPHWI*QRPAHTKPASL
Trigger: CAAGGATGCTGGCTTGGTGTGAGCTGGTCTCTGGCATATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CCA 72 bp CCTGCGGGATCATGGAGTCCACTGTGTCCAGCTCCTTaGAGAATCGGTTCACTAGGTTCCCACTGGGTGTAC +
Preference number: 3 (lower is better)
Translates to: PAGSWSPLCPAP*RIGSLGSHWVY
Trigger: GTACACCCAGTGGGAACCTAGTGAACCGATTCTCCAAGGAGCTGGACACAGTGGACTCCATGATCCCGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp ACACAGCCATGGAGTAGCCAAATATTGCTGCACCTTGCAAGATGCCCAAGGCCCGCCCTGCAGTCCTCATaGGATATGCCAGAGACCAGC +
Preference number: 3 (lower is better)
Translates to: TQPWSSQILLHLARCPRPALQSS*DMPETS
Trigger: GCTGGTCTCTGGCATATCCAATGAGGACTGCAGGGC...GGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR TCA 72 bp TCTCACTGGACAAGGAGCTCAGTGACTTGGCTAGGCTaGCTGGCTAGAGAACCCCAACGTTGCTCCCGTTTC +
Preference number: 3 (lower is better)
Translates to: SHWTRSSVTWLG*LAREPQRCSRF
Trigger: GAAACGGGAGCAACGTTGGGGTTCTCTAGCCAGTCAGCCTAGCCAAGTCACTGAGCTCCTTGTCCAGTGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR GCA 72 bp GCCCAGGTATTTATGGACTTTGCCATTCTGCCTCACTaGCAGACTCCAGGCAGCTCTTACCTTTGCCCTCCC +
Preference number: 3 (lower is better)
Translates to: AQVFMDFAILPH*QTPGSSYLCPP
Trigger: GGGAGGGCAAAGGTAAGAGCTGCCTGGAGTCTGGCAGTGAGGCAGAATGGCAAAGTCCATAAATACCTGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR GCA 72 bp TGGGGCCAGGTGCTGGGTGGAGCTGTTTCCTGGATTTaGCAAGGAGCCTCCTTCTCTGTTTCAGAATACTCC +
Preference number: 3 (lower is better)
Translates to: WGQVLGGAVSWI*QGASFSVSEYS
Trigger: GGAGTATTCTGAAACAGAGAAGGAGGCTCCTTGGCAAATCCAGGAAACAGCTCCACCCAGCACCTGGCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp AGGTTATCTGTCTCTAGGTCCACAGCTGCGGTAGCCTCGTCCAACACTAGAATCGCCCTGCAGTCCTCATaGGATATGCCAGAGACCAGC +
Preference number: 3 (lower is better)
Translates to: RLSVSRSTAAVASSNTRIALQSS*DMPETS
Trigger: GCTGGTCTCTGGCATATCCAATGAGGACTGCAGGGC...GATTCTAGTGTTGGACGAGGCTACCGCAGCTGTGGACCTAGAGACAGATAACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp CACAGCCATGGAGTAGCCAAATATTGCTGCACCTTGCAAGATGCCCAAGGCCCCCCCATCTCTGAGATCTaGCCGCCACTCATGACAATG +
Preference number: 3 (lower is better)
Translates to: HSHGVAKYCCTLQDAQGPPISEI*PPLMTM
Trigger: CATTGTCATGAGTGGCGGCAAGATCTCAGAGATGGG...GGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTG
54% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp GAGCTCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACCCCATCTCTGAGATCTaGCCGCCACTCATGACAATG +
Preference number: 3 (lower is better)
Translates to: ELRGCTTLPNFSFVQDNHPISEI*PPLMTM
Trigger: CATTGTCATGAGTGGCGGCAAGATCTCAGAGATGGG...GTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp CGAGTTGCTGAGATGCCTCTGCAGGTGCTTTCCTACGGTGTCTGTCACCAGCATCCCATCTCTGAGATCTaGCCGCCACTCATGACAATG +
Preference number: 3 (lower is better)
Translates to: RVAEMPLQVLSYGVCHQHPISEI*PPLMTM
Trigger: CATTGTCATGAGTGGCGGCAAGATCTCAGAGATGGG...ATGCTGGTGACAGACACCGTAGGAAAGCACCTGCAGAGGCATCTCAGCAACTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp AGTGAACCCATGAACATCTTGATGACCTGCGGGATCATGGAGTCCACTGTGTCCCTGTGGGAAGACGAGTaGCTGAGATGCCTCTGCAGG +
Preference number: 3 (lower is better)
Translates to: SEPMNILMTCGIMESTVSLWEDE*LRCLCR
Trigger: CCTGCAGAGGCATCTCAGCAACTCGTCTTCCCACAG...GGACACAGTGGACTCCATGATCCCGCAGGTCATCAAGATGTTCATGGGTTCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp ATGAAGCGCTCCTGCTCCTCAAAAGCACGGATGACACTGACTCCCAGCAAGGTCAAATATTGCTGCACCTaGCAAGATGCCCAAGGCCCC +
Preference number: 3 (lower is better)
Translates to: MKRSCSSKARMTLTPSKVKYCCT*QDAQGP
Trigger: GGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTT...GACCTTGCTGGGAGTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp CACAGCCATGGAGTAGCCAAATATTGCTGCACCTTGCAAGATGCCCAAGGCCCCGGTGATCGCAGAACATaGTATAGCAGGTCCAGGTGC +
Preference number: 3 (lower is better)
Translates to: HSHGVAKYCCTLQDAQGPGDRRT*YSRSRC
Trigger: GCACCTGGACCTGCTATACAATGTTCTGCGATCACC...GGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp TCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACCCGCGAACCCATGAACATCTaGATGACCTGCGGGATCATG +
Preference number: 3 (lower is better)
Translates to: SEGAPHSRTSPLSRTITREPMNI*MTCGIM
Trigger: CATGATCCCGCAGGTCATCAAGATGTTCATGGGTTC...GCGGGTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp CCCAGCAAGGTCTCATTGAAGTGTGAGTACACAGGGGAACGGCTGACAGACTCCGGCGCTTCAGTTGTCTaGAGGAAGCCACATAGAACC +
Preference number: 3 (lower is better)
Translates to: PSKVSLKCEYTGERLTDSGASVV*RKPHRT
Trigger: GGTTCTATGTGGCTTCCTCAAGACAACTGAAGCGCC...GGAGTCTGTCAGCCGTTCCCCTGTGTACTCACACTTCAATGAGACCTTGCTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp CCTCATTGGATATGCCAGAGACCAGCTCACACCAAGCCAGCATCCTTGGCCATGGGCGCTTCAGTTGTCTaGAGGAAGCCACATAGAACC +
Preference number: 3 (lower is better)
Translates to: PHWICQRPAHTKPASLAMGASVV*RKPHRT
Trigger: GGTTCTATGTGGCTTCCTCAAGACAACTGAAGCGCC...CATGGCCAAGGATGCTGGCTTGGTGTGAGCTGGTCTCTGGCATATCCAATGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 72 bp AGGGTGCCAGAGGCCAGACGTGTATCTGAAGTGGGGTaGATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCA +
Preference number: 3 (lower is better)
Translates to: RVPEARRVSEVG*ICLPASSRSDP
Trigger: TGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGGCACCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 72 bp CTGTGGGAAGACGAGTTGCTGAGATGCCTCTGCAGGTaGTTTCCTACGGTGTCTGTCACCAGCATCCCATTT +
Preference number: 3 (lower is better)
Translates to: LWEDELLRCLCR*FPTVSVTSIPF
Trigger: AAATGGGATGCTGGTGACAGACACCGTAGGAAAGCACCTGCAGAGGCATCTCAGCAACTCGTCTTCCCACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 72 bp CCCGATGGACACAGCCATGGAGTAGCCAAATATTGCTaGACCTTGCAAGATGCCCAAGGCCCCATAGACACT +
Preference number: 3 (lower is better)
Translates to: PDGHSHGVAKYC*TLQDAQGPIDT
Trigger: AGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTGTCCATCGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CCA 72 bp CTTTCAGGGTGCCAGAGGCCAGACGTGTATCTGAAGTaGGGTGCATCTGTCTTCCAGCTTCTTCAAGGTCAG +
Preference number: 3 (lower is better)
Translates to: LSGCQRPDVYLK*GASVFQLLQGQ
Trigger: CTGACCTTGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGGCACCCTGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp GTCTTTGATACCAGATTCTTGCCCGTGGGCACCATCCCTTCTGCTCTTGACTTTCGTAGGTTTCCAGGGTaGCTGGCTCATGCCTGGACT +
Preference number: 3 (lower is better)
Translates to: VFDTRFLPVGTIPSALDFRRFPG*LAHAWT
Trigger: AGTCCAGGCATGAGCCAGCAACCCTGGAAACCTACG...AAAGTCAAGAGCAGAAGGGATGGTGCCCACGGGCAAGAATCTGGTATCAAAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CAA 90 bp TGCCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTGCTGGCATCAAGTTCTaGCTAACCATGGGGGTCTCT +
Preference number: 3 (lower is better)
Translates to: CQRPDVYLKWGASVFQLLAGIKF*LTMGVS
Trigger: AGAGACCCCCATGGTTAGCAAGAACTTGATGCCAGC...AAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CAA 90 bp CTGCACCTTGCAAGATGCCCAAGGCCCCATAGACACTCAGCCGAAAATTCCTGTAAATATTGCTGCACCTaGCAAGATGCCCAAGGCCCC +
Preference number: 3 (lower is better)
Translates to: LHLARCPRPHRHSAENSCKYCCT*QDAQGP
Trigger: GGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTT...ACAGGAATTTTCGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp AAAACAGGATCCTGTGGAATGATGGTGATCTTGAAGCGCAGGTTGTGCAGGCCGAACAGCACAATGCAGTaGCCCACACACTCAAGGCGC +
Preference number: 3 (lower is better)
Translates to: KTGSCGMMVILKRRLCRPNSTMQ*PTHSRR
Trigger: GCGCCTTGAGTGTGTGGGCAACTGCATTGTGCTGTT...CGGCCTGCACAACCTGCGCTTCAAGATCACCATCATTCCACAGGATCCTGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp TGCCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCCTTCTGCAGACTCATaGATCCGGAACAAACCCAGG +
Preference number: 3 (lower is better)
Translates to: CQRPDVYLKWGASVFQLLPSADS*IRNKPR
Trigger: CCTGGGTTTGTTCCGGATCAATGAGTCTGCAGAAGG...AAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCACCTTCTGCAGACTCATaGATCCGGAACAAACCCAGG +
Preference number: 3 (lower is better)
Translates to: PEARRVSEVGCICLPASSPSADS*IRNKPR
Trigger: CCTGGGTTTGTTCCGGATCAATGAGTCTGCAGAAGG...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR TCA 72 bp GTGAACTTTCAGGGTGCCAGAGGCCAGACGTGTATCTaGAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAAG +
Preference number: 3 (lower is better)
Translates to: VNFQGARGQTCI*SGVHLSSSFFK
Trigger: CTTGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGGCACCCTGAAAGTTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR TCA 72 bp CATTTTCCACCGGCTTTGACTCCTTCCCTGAACCACTaGCACCATTCTTACTGTCATCCTCCGAGGCCAGGT +
Preference number: 3 (lower is better)
Translates to: HFPPALTPSLNH*HHSYCHPPRPG
Trigger: ACCTGGCCTCGGAGGATGACAGTAAGAATGGTGTCAGTGGTTCAGGGAAGGAGTCAAAGCCGGTGGAAAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR TCA 72 bp AGCTCCAGGGCCATCCAGACTTCTTCATCAGAATACTaGCTGAAAGGGTCCAAGTTCATGCGGAGGGAACCC +
Preference number: 3 (lower is better)
Translates to: SSRAIQTSSSEY*LKGSKFMRREP
Trigger: GGGTTCCCTCCGCATGAACTTGGACCCTTTCAGTCAGTATTCTGATGAAGAAGTCTGGATGGCCCTGGAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 72 bp CAGTGTGGCTTGTGTTTGGTCACTAGTATGTTTAGCTaGCCATGGACTTGCCGTGGGATACGGCAGGAGCAT +
Preference number: 3 (lower is better)
Translates to: QCGLCLVTSMFS*PWTCRGIRQEH
Trigger: ATGCTCCTGCCGTATCCCACGGCAAGTCCATGGGCAGCTAAACATACTAGTGACCAAACACAAGCCACACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 72 bp GGCGATGTTGACCCCATCAATGATGATCTCCCCTTCTaGAGACTCATTGATCCGGAACAAACCCAGGGTGAG +
Preference number: 3 (lower is better)
Translates to: GDVDPINDDLPF*RLIDPEQTQGE
Trigger: CTCACCCTGGGTTTGTTCCGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAACATCGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 72 bp TCCTGTGGAATGATGGTGATCTTGAAGCGCAGGTTGTaGAGGCCGATCTTGGCGATGTTGACCCCATCAATG +
Preference number: 3 (lower is better)
Translates to: SCGMMVILKRRL*RPILAMLTPSM
Trigger: CATTGATGGGGTCAACATCGCCAAGATCGGCCTGCACAACCTGCGCTTCAAGATCACCATCATTCCACAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp CTCATTGGATATGCCAGAGACCAGCTCACACCAAGCCAGCATCCTTGGCCATGCATGAGGCAGTGTGGCTaGTGTTTGGTCACTAGTATG +
Preference number: 3 (lower is better)
Translates to: LIGYARDQLTPSQHPWPCMRQCG*CLVTSM
Trigger: CATACTAGTGACCAAACACAAGCCACACTGCCTCAT...GCATGGCCAAGGATGCTGGCTTGGTGTGAGCTGGTCTCTGGCATATCCAATGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp TGCCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCCCCAGTGCAGGGGTTaGTATGGATATATTACCTGG +
Preference number: 3 (lower is better)
Translates to: CQRPDVYLKWGASVFQLLPQCRG*YGYITW
Trigger: CCAGGTAATATATCCATACAAACCCCTGCACTGGGG...AAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CAA 90 bp CAAAGAAACTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCCTGTGGGAAGACGAGTaGCTGAGATGCCTCTGCAGG +
Preference number: 3 (lower is better)
Translates to: QRNSWVIAEHCIAGPGASLWEDE*LRCLCR
Trigger: CCTGCAGAGGCATCTCAGCAACTCGTCTTCCCACAG...GCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp TTCAGTCTCTCCACTGCCACAATGTTGGTCTCCATCTCCGAGGACATTCGAACCAAATATTGCTGCACCTaGCAAGATGCCCAAGGCCCC +
Preference number: 3 (lower is better)
Translates to: FSLSTATMLVSISEDIRTKYCCT*QDAQGP
Trigger: GGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTT...GGTTCGAATGTCCTCGGAGATGGAGACCAACATTGTGGCAGTGGAGAGACTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp CCCAGCAAGGTCTCATTGAAGTGTGAGTACACAGGGGAACGGCTGACAGACTCCTGGAGTAGCCAAATATaGCTGCACCTTGCAAGATGC +
Preference number: 3 (lower is better)
Translates to: PSKVSLKCEYTGERLTDSWSSQI*LHLARC
Trigger: GCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCA...GGAGTCTGTCAGCCGTTCCCCTGTGTACTCACACTTCAATGAGACCTTGCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp GAGCTCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACTGGAGTAGCCAAATATaGCTGCACCTTGCAAGATGC +
Preference number: 3 (lower is better)
Translates to: ELRGCTTLPNFSFVQDNHWSSQI*LHLARC
Trigger: GCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCA...GTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGAGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp AGTGAACCCATGAACATCTTGATGACCTGCGGGATCATGGAGTCCACTGTGTCCGGTGATCGCAGAACATaGTATAGCAGGTCCAGGTGC +
Preference number: 3 (lower is better)
Translates to: SEPMNILMTCGIMESTVSGDRRT*YSRSRC
Trigger: GCACCTGGACCTGCTATACAATGTTCTGCGATCACC...GGACACAGTGGACTCCATGATCCCGCAGGTCATCAAGATGTTCATGGGTTCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp AATCGTGAGCACAGTACAGTCTTCAAACTGTGTCCGGATGGTGGACTGGATAAGACATGTCCCTCCACCTaGTCCATCTCAGCCAGCAGG +
Preference number: 3 (lower is better)
Translates to: NREHSTVFKLCPDGGLDKTCPST*SISASR
Trigger: CCTGCTGGCTGAGATGGACAAGGTGGAGGGACATGT...CTTATCCAGTCCACCATCCGGACACAGTTTGAAGACTGTACTGTGCTCACGATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000130671.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp GACCTTAGAGGCCGGAAACTCAAGTTACAGATAGTTCTGAGCTGTCCAATATGGGCCCTGCAGTCCTCATaGGATATGCCAGAGACCAGC +
Preference number: 3 (lower is better)
Translates to: DLRGRKLKLQIVLSCPIWALQSS*DMPETS
Trigger: GCTGGTCTCTGGCATATCCAATGAGGACTGCAGGGC...CCATATTGGACAGCTCAGAACTATCTGTAACTTGAGTTTCCGGCCTCTAAGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CAA 90 bp GTTGACCCCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGGAACAATTGTGCAGGCCGATCTaGGCGATGTTGACCCCATCA +
Preference number: 3 (lower is better)
Translates to: VDPINDDLPFCRLIDPEQLCRPI*AMLTPS
Trigger: TGATGGGGTCAACATCGCCAAGATCGGCCTGCACAA...TTGTTCCGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR TCA 72 bp TTCTCTTCTGGCCCTATAAGGAACTCTGGCTGTCTTTaGTACCAGATTCTTGCCCGTGGGCACCATCCCTTC +
Preference number: 3 (lower is better)
Translates to: FSSGPIRNSGCL*YQILARGHHPF
Trigger: GAAGGGATGGTGCCCACGGGCAAGAATCTGGTATCAAAGACAGCCAGAGTTCCTTATAGGGCCAGAAGAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR TCA 72 bp GATAGTTCTGAGCTGTCCAATATGGGTGCAAGGGACTaGACCTGGGTCCTCTGCAGGTACATCATGCATTCC +
Preference number: 3 (lower is better)
Translates to: DSSELSNMGARD*TWVLCRYIMHS
Trigger: GGAATGCATGATGTACCTGCAGAGGACCCAGGTTCAGTCCCTTGCACCCATATTGGACAGCTCAGAACTATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR TCA 72 bp GCCTTCTGGTTCTCATCTACTTTCAGGTCACTCTGGTaGATGAAGCGCTCCTGCTCCTCAAAAGCACGGATG +
Preference number: 3 (lower is better)
Translates to: AFWFSSTFRSLW*MKRSCSSKARM
Trigger: CATCCGTGCTTTTGAGGAGCAGGAGCGCTTCATTCACCAGAGTGACCTGAAAGTAGATGAGAACCAGAAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 72 bp TTCAGACTGAGGATCAAGTGCAGAGCTGGGCATGGCTaGTCCCTGAATCTAGTACCTTCTCCCAGACATCAA +
Preference number: 3 (lower is better)
Translates to: FRLRIKCRAGHG*SLNLVPSPRHQ
Trigger: TTGATGTCTGGGAGAAGGTACTAGATTCAGGGAGCAGCCATGCCCAGCTCTGCACTTGATCCTCAGTCTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR GCA 72 bp GAACAAGCACTAACTGCTGAGCCACCTCTCCAGTCCTaGCCTGCCACTATTGATGACAGTGGTATCATAGCT +
Preference number: 3 (lower is better)
Translates to: EQALTAEPPLQS*PATIDDSGIIA
Trigger: AGCTATGATACCACTGTCATCAATAGTGGCAGGGCAGGACTGGAGAGGTGGCTCAGCAGTTAGTGCTTGTTC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR GCA 72 bp CCATGGAGTAGCCAAATATTGCTGCACCTTGCAAGATaGCCAAGGCCCCATAGACACTCAGCCGAAAATTCC +
Preference number: 3 (lower is better)
Translates to: PWSSQILLHLAR*PRPHRHSAENS
Trigger: GGAATTTTCGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CCA 72 bp AGTATTCAGACTGAGGATCAAGTGCAGAGCTGGGCATaGCTGCTCCCTGAATCTAGTACCTTCTCCCAGACA +
Preference number: 3 (lower is better)
Translates to: SIQTEDQVQSWA*LLPESSTFSQT
Trigger: TGTCTGGGAGAAGGTACTAGATTCAGGGAGCAGCCATGCCCAGCTCTGCACTTGATCCTCAGTCTGAATACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR CCA 72 bp CAAAAACCGACAGTAGGACGCAAGCCCAGGTATTTATaGACTTTGCCATTCTGCCTCACTGCCAGACTCCAG +
Preference number: 3 (lower is better)
Translates to: QKPTVGRKPRYL*TLPFCLTARLQ
Trigger: CTGGAGTCTGGCAGTGAGGCAGAATGGCAAAGTCCATAAATACCTGGGCTTGCGTCCTACTGTCGGTTTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CAA 90 bp CTCCACCTTCTGCACACTCATGGTTCAGCTTGTCAGGCAAAGCTGACACAAAGCATGAGGCAGTGTGGCTaGTGTTTGGTCACTAGTATG +
Preference number: 3 (lower is better)
Translates to: LHLLHTHGSACQAKLTQSMRQCG*CLVTSM
Trigger: CATACTAGTGACCAAACACAAGCCACACTGCCTCAT...GCTTTGTGTCAGCTTTGCCTGACAAGCTGAACCATGAGTGTGCAGAAGGTGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp CAGCCCCACTTATTACCAAGAAGTATTTGGGACACTTGTGACACAGCTTTGTCCAGGCAGCTCTTACCTTaGCCCTCCCCCATCTCTTTC +
Preference number: 3 (lower is better)
Translates to: QPHLLPRSIWDTCDTALSRQLLP*PSPISF
Trigger: GAAAGAGATGGGGGAGGGCAAAGGTAAGAGCTGCCT...GGACAAAGCTGTGTCACAAGTGTCCCAAATACTTCTTGGTAATAAGTGGGGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CAA 90 bp ATGAACATCTTGATGACCTGCGGGATCATGGAGTCCACTGTGTCCAGCTCCTTGTGGAGTAGCCAAATATaGCTGCACCTTGCAAGATGC +
Preference number: 3 (lower is better)
Translates to: MNILMTCGIMESTVSSSLWSSQI*LHLARC
Trigger: GCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCA...CAAGGAGCTGGACACAGTGGACTCCATGATCCCGCAGGTCATCAAGATGTTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp CAAAGAAACTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCGGTGATCGCAGAACATaGTATAGCAGGTCCAGGTGC +
Preference number: 3 (lower is better)
Translates to: QRNSWVIAEHCIAGPGASGDRRT*YSRSRC
Trigger: GCACCTGGACCTGCTATACAATGTTCTGCGATCACC...GCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR TCA 72 bp AGGTTCCCCTGCACAGATGGCAAGCACTTTACCAACTaGGCCATCTCACTAGCCCCATTTCCCAAGATCATA +
Preference number: 3 (lower is better)
Translates to: RFPCTDGKHFTN*AISLAPFPKII
Trigger: TATGATCTTGGGAAATGGGGCTAGTGAGATGGCTCAGTTGGTAAAGTGCTTGCCATCTGTGCAGGGGAACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR GCA 72 bp GAGGACCACTTTGAAGTATTCAGACTGAGGATCAAGTaGAGAGCTGGGCATGGCTGCTCCCTGAATCTAGTA +
Preference number: 3 (lower is better)
Translates to: EDHFEVFRLRIK*RAGHGCSLNLV
Trigger: TACTAGATTCAGGGAGCAGCCATGCCCAGCTCTGCACTTGATCCTCAGTCTGAATACTTCAAAGTGGTCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CAA 90 bp CCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGGAACAAACCCAGGATGAGGCAGTGTGGCTaGTGTTTGGTCACTAGTATG +
Preference number: 3 (lower is better)
Translates to: PSMMISPSADSLIRNKPRMRQCG*CLVTSM
Trigger: CATACTAGTGACCAAACACAAGCCACACTGCCTCAT...CCTGGGTTTGTTCCGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 72 bp CTTCTCTGTTTCAGAATACTCCTTCAGTCTCTCCACTaGCACAATGTTGGTCTCCATCTCCGAGGACATTCG +
Preference number: 3 (lower is better)
Translates to: LLCFRILLQSLH*HNVGLHLRGHS
Trigger: CGAATGTCCTCGGAGATGGAGACCAACATTGTGGCAGTGGAGAGACTGAAGGAGTATTCTGAAACAGAGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CCA 72 bp AAACTCAAGTTACAGATAGTTCTGAGCTGTCCAATATaGGTGCAAGGGACTGAACCTGGGTCCTCTGCAGGT +
Preference number: 3 (lower is better)
Translates to: KLKLQIVLSCPI*VQGTEPGSSAG
Trigger: ACCTGCAGAGGACCCAGGTTCAGTCCCTTGCACCCATATTGGACAGCTCAGAACTATCTGTAACTTGAGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CAA 90 bp AGGAGCTCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCAGACGCCTAAGTATTTaGCTTCCTTTTAGTTTGGTT +
Preference number: 3 (lower is better)
Translates to: RSSEGAPHSRTSPLSRTIRRLSI*LPFSLV
Trigger: AACCAAACTAAAAGGAAGCAAAATACTTAGGCGTCT...GATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGAGCTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp TGGCCCTTTGGAGCTAGAGATATAGGCAACTGTAAGACACTGAACACAGGTGCTCCAGACATCAAATTCTaGGGACTATCCTTCTCCACG +
Preference number: 3 (lower is better)
Translates to: WPFGARDIGNCKTLNTGAPDIKF*GLSFST
Trigger: CGTGGAGAAGGATAGTCCCAAGAATTTGATGTCTGG...AGCACCTGTGTTCAGTGTCTTACAGTTGCCTATATCTCTAGCTCCAAAGGGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CAA 90 bp GGCGATGTTGACCCCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGGTGACATTTATGTGCTaGAGAACCAAGTCCAAGTCT +
Preference number: 3 (lower is better)
Translates to: GDVDPINDDLPFCRLIDPVTFMC*RTKSKS
Trigger: AGACTTGGACTTGGTTCTCAAGCACATAAATGTCAC...CGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAACATCGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp TTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTCCTTCTGCAGACTCATaGATCCGGAACAAACCCAGG +
Preference number: 3 (lower is better)
Translates to: FFKVRSRMKPNGDRRLSIPSADS*IRNKPR
Trigger: CCTGGGTTTGTTCCGGATCAATGAGTCTGCAGAAGG...AATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCATTAAATTTTTGGGTTTaGTCTGGGAAGCGTAGGTTT +
Preference number: 3 (lower is better)
Translates to: PEARRVSEVGCICLPASSLNFWV*SGKRRF
Trigger: AAACCTACGCTTCCCAGACAAAACCCAAAAATTTAA...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR GCA 72 bp TATAAGGAACTCTGGCTGTCTTTGATACCAGATTCTTaGCCGTGGGCACCATCCCTTCTGCTCTTGACTTTT +
Preference number: 3 (lower is better)
Translates to: YKELWLSLIPDS*PWAPSLLLLTF
Trigger: AAAAGTCAAGAGCAGAAGGGATGGTGCCCACGGGCAAGAATCTGGTATCAAAGACAGCCAGAGTTCCTTATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR GCA 72 bp CCCACCTTTTCTCCACCCTCAATGGTGACATTTATGTaGTTGAGAACCAAGTCCAAGTCTTCTCGATACCTC +
Preference number: 3 (lower is better)
Translates to: PTFSPPSMVTFM*LRTKSKSSRYL
Trigger: GAGGTATCGAGAAGACTTGGACTTGGTTCTCAAGCACATAAATGTCACCATTGAGGGTGGAGAAAAGGTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp CTCCACCTTCTGCACACTCATGGTTCAGCTTGTCAGGCAAAGCTGACACAAAGCTTAAATTTTTGGGTTTaGTCTGGGAAGCGTAGGTTT +
Preference number: 3 (lower is better)
Translates to: LHLLHTHGSACQAKLTQSLNFWV*SGKRRF
Trigger: AAACCTACGCTTCCCAGACAAAACCCAAAAATTTAA...GCTTTGTGTCAGCTTTGCCTGACAAGCTGAACCATGAGTGTGCAGAAGGTGGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp TTCAGTCTCTCCACTGCCACAATGTTGGTCTCCATCTCCGAGGACATTCGAACCAGACGCCTAAGTATTTaGCTTCCTTTTAGTTTGGTT +
Preference number: 3 (lower is better)
Translates to: FSLSTATMLVSISEDIRTRRLSI*LPFSLV
Trigger: AACCAAACTAAAAGGAAGCAAAATACTTAGGCGTCT...GGTTCGAATGTCCTCGGAGATGGAGACCAACATTGTGGCAGTGGAGAGACTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp AATCGTGAGCACAGTACAGTCTTCAAACTGTGTCCGGATGGTGGACTGGATAAGGTGACATTTATGTGCTaGAGAACCAAGTCCAAGTCT +
Preference number: 3 (lower is better)
Translates to: NREHSTVFKLCPDGGLDKVTFMC*RTKSKS
Trigger: AGACTTGGACTTGGTTCTCAAGCACATAAATGTCAC...CTTATCCAGTCCACCATCCGGACACAGTTTGAAGACTGTACTGTGCTCACGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CCA 72 bp AGTACAGATCAGCCCCACTTATTACCAAGAAGTATTTaGGACACTTGTGACACAGCTTTGTCCAGGGTCACA +
Preference number: 3 (lower is better)
Translates to: STDQPHLLPRSI*DTCDTALSRVT
Trigger: TGTGACCCTGGACAAAGCTGTGTCACAAGTGTCCCAAATACTTCTTGGTAATAAGTGGGGCTGATCTGTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR TCA 72 bp TGTTCATTTTGGTTCCCATGTTTCAACTGCAAGACCTaGAGGCAAGATGCACTCTTCTGTAACCAACACGAC +
Preference number: 3 (lower is better)
Translates to: CSFWFPCFNCKT*RQDALFCNQHD
Trigger: GTCGTGTTGGTTACAGAAGAGTGCATCTTGCCTTCAGGTCTTGCAGTTGAAACATGGGAACCAAAATGAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR TCA 72 bp CAGATTCTTGCCCGTGGGCACCATCCCTTCTGCTCTTaGCTTTTGCTGCTTATAACTATTCATAGACCTTAT +
Preference number: 3 (lower is better)
Translates to: QILARGHHPFCS*LLLLITIHRPY
Trigger: ATAAGGTCTATGAATAGTTATAAGCAGCAAAAGTCAAGAGCAGAAGGGATGGTGCCCACGGGCAAGAATCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR CCA 72 bp CCTGAATCTAGTACCTTCTCCCAGACATCAAATTCTTaGGACTATCCTTCTCCACGAAACGATGCTCATAAG +
Preference number: 3 (lower is better)
Translates to: PESSTFSQTSNS*DYPSPRNDAHK
Trigger: CTTATGAGCATCGTTTCGTGGAGAAGGATAGTCCCAAGAATTTGATGTCTGGGAGAAGGTACTAGATTCAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR CCA 72 bp TTAGAGCCAAAATTCAAAGCAAGTATGAACTGTGGCTaGCATCAAGTTCTTGCTAACCATGGGGGTCTCTCT +
Preference number: 3 (lower is better)
Translates to: LEPKFKASMNCG*HQVLANHGGLS
Trigger: AGAGAGACCCCCATGGTTAGCAAGAACTTGATGCCAGCCACAGTTCATACTTGCTTTGAATTTTGGCTCTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR CCA 72 bp TGTATGGATATATTACCTGGCTTTTATGTTGAGGATTaGAATGCAGGTTCCCCTGCACAGATGGCAAGCACT +
Preference number: 3 (lower is better)
Translates to: CMDILPGFYVED*NAGSPAQMAST
Trigger: AGTGCTTGCCATCTGTGCAGGGGAACCTGCATTCCAATCCTCAACATAAAAGCCAGGTAATATATCCATACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CAA 90 bp GTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTAGACGCCTAAGTATTTaGCTTCCTTTTAGTTTGGTT +
Preference number: 3 (lower is better)
Translates to: VHLSSSFFKVRSRMKPNGRRLSI*LPFSLV
Trigger: AACCAAACTAAAAGGAAGCAAAATACTTAGGCGTCT...ACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp CCAAATGGTGACAGACGCCTAAGTATTTTGCTTCCTTTTAGTTTGGTTTCGTTTGAGCCCTCCCCAGCTTaGAACAGGAAGAAACAGAAA +
Preference number: 3 (lower is better)
Translates to: PNGDRRLSILLPFSLVSFEPSPA*NRKKQK
Trigger: TTTCTGTTTCTTCCTGTTCAAAGCTGGGGAGGGCTC...AAACGAAACCAAACTAAAAGGAAGCAAAATACTTAGGCGTCTGTCACCATTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CAA 90 bp TTGACCCCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGGAACAAAAGACGCCTAAGTATTTaGCTTCCTTTTAGTTTGGTT +
Preference number: 3 (lower is better)
Translates to: LTPSMMISPSADSLIRNKRRLSI*LPFSLV
Trigger: AACCAAACTAAAAGGAAGCAAAATACTTAGGCGTCT...TTTGTTCCGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp AAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTTTGCTTTTAAATTTTTGGGTTTaGTCTGGGAAGCGTAGGTTT +
Preference number: 3 (lower is better)
Translates to: KVRSRMKPNGDRRLSILLLNFWV*SGKRRF
Trigger: AAACCTACGCTTCCCAGACAAAACCCAAAAATTTAA...AAGCAAAATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR-3UTR CAA 90 bp GGGACTGACATTAGAGCCAAAATTCAAAGCAAGTATGAACTGTGGCTGGCATCATCCTTTTTGTTCATTTaGGTTCCCATGTTTCAACTG +
Preference number: 3 (lower is better)
Translates to: GTDIRAKIQSKYELWLASSFLFI*VPMFQL
Trigger: CAGTTGAAACATGGGAACCAAAATGAACAAAAAGGA...TGATGCCAGCCACAGTTCATACTTGCTTTGAATTTTGGCTCTAATGTCAGTCCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR-3UTR CAA 90 bp GGGACTGACATTAGAGCCAAAATTCAAAGCAAGTATGAACTGTGGCTGGCATCATTCTTTCTCTCCTTTTaGTTCATTTTGGTTCCCATG +
Preference number: 3 (lower is better)
Translates to: GTDIRAKIQSKYELWLASFFLSF*FILVPM
Trigger: CATGGGAACCAAAATGAACAAAAAGGAGAGAAAGAA...TGATGCCAGCCACAGTTCATACTTGCTTTGAATTTTGGCTCTAATGTCAGTCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp CAGGTCCTGCTCAGCGTTGGCATAGGTGCGCAGGAACTCAGCGAAGGCCCCATCTGGCGAGCAGCATGGTaGTGCCCAGCAGTGTTGGGC +
Preference number: 4 (lower is better)
Translates to: QVLLSVGIGAQELSEGPIWRAAW*CPAVLG
Trigger: GCCCAACACTGCTGGGCATCACCATGCTGCTCGCCA...GATGGGGCCTTCGCTGAGTTCCTGCGCACCTATGCCAACGCTGAGCAGGACCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp GTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATGCCAGGCTCACACGCTaGTTCTGGCCCCCTGACAGG +
Preference number: 4 (lower is better)
Translates to: VAGSCLDSGILALQSSLDARLTR*FWPPDR
Trigger: CCTGTCAGGGGGCCAGAAGCAGCGTGTGAGCCTGGC...ATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp CCCCCTGACAGGTTCACACCCTTCTCACCGATCTCTGTGCGGTCCCCACTGGGCCTCATGACTTTGTCCTaGAAGGCCAGCTCCCAGGCG +
Preference number: 4 (lower is better)
Translates to: PPDRFTPFSPISVRSPLGLMTLS*KASSQA
Trigger: CGCCTGGGAGCTGGCCTTCCAGGACAAAGTCATGAG...GCCCAGTGGGGACCGCACAGAGATCGGTGAGAAGGGTGTGAACCTGTCAGGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp GGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGCTGAATGGGGCCAGGTaGTGGGTGGAGCTGTTTCCT +
Preference number: 4 (lower is better)
Translates to: GLLAHAWTLGSWPCSPHWLNGAR*WVELFP
Trigger: AGGAAACAGCTCCACCCAGCACCTGGCCCCATTCAG...CCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp GTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATCCAGCAGTGTTGGGCTaGCCAGTAACACTGGGGCTC +
Preference number: 4 (lower is better)
Translates to: VAGSCLDSGILALQSSLDPAVLG*PVTLGL
Trigger: GAGCCCCAGTGTTACTGGTCAGCCCAACACTGCTGG...ATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp TCCAGGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATCGGGGTTGCTGGTGTaGCATGTGACATTCCAGTCC +
Preference number: 4 (lower is better)
Translates to: SRVAGSCLDSGILALQSSSGLLV*HVTFQS
Trigger: GGACTGGAATGTCACATGGCACACCAGCAACCCCGA...TGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp TATAGCAGGTCCAGGTGCAAGCGACGGGAGGCAAAGATGCCCCCGATGGACACAATGACCAGAGGTCACTaGTCTCCAGGGGCTGGCGGT +
Preference number: 4 (lower is better)
Translates to: YSRSRCKRREAKMPPMDTMTRGH*SPGAGG
Trigger: ACCGCCAGCCCCTGGAGAGCAGTGACCTCTGGTCAT...TGTGTCCATCGGGGGCATCTTTGCCTCCCGTCGCTTGCACCTGGACCTGCTATA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp GTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATATGACCAGAGGTCACTaGTCTCCAGGGGCTGGCGGT +
Preference number: 4 (lower is better)
Translates to: VAGSCLDSGILALQSSLDMTRGH*SPGAGG
Trigger: ACCGCCAGCCCCTGGAGAGCAGTGACCTCTGGTCAT...ATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CAA 72 bp TGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATaGGATATGCCAGAGACCAGCTCACACCAAGCCAGC +
Preference number: 4 (lower is better)
Translates to: CLDSGILALQSS*DMPETSSHQAS
Trigger: GCTGGCTTGGTGTGAGCTGGTCTCTGGCATATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp TCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACCCGCACGTGGCCAAGTCCATaGAGCGCTGAGCATCCACGG +
Preference number: 4 (lower is better)
Translates to: SEGAPHSRTSPLSRTITRTWPSP*SAEHPR
Trigger: CCGTGGATGCTCAGCGCTTCATGGACTTGGCCACGT...GCGGGTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GGAAGCGTAGGTTTCCAGGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCACAAAGCCCTTTAGGTaGGCAAGCTCCAGGGCCATC +
Preference number: 4 (lower is better)
Translates to: GSVGFQGCWLMPGLWDPGTKPFR*ASSRAI
Trigger: GATGGCCCTGGAGCTTGCTCACCTAAAGGGCTTTGT...GCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCTGGAAACCTACGCTTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp TCCAGGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCAAACCAGACCCAAGGGTaGGATGATGACTGCGGCAAT +
Preference number: 4 (lower is better)
Translates to: SRVAGSCLDSGILALQSSNQTQG*DDDCGN
Trigger: ATTGCCGCAGTCATCATCCCACCCTTGGGTCTGGTT...TGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp GGAAGCGTAGGTTTCCAGGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCAACAAGGCACCCATGTaGGGACCGTGTTCTGAAAGC +
Preference number: 4 (lower is better)
Translates to: GSVGFQGCWLMPGLWDPGNKAPM*GPCSES
Trigger: GCTTTCAGAACACGGTCCTCACATGGGTGCCTTGTT...GCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCTGGAAACCTACGCTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GCGGCAATGGGCGTGGCCAGTAGGATGATGATGACAGCTCCAATGACACTGAAGCCAGCAGTGTTGGGCTaGCCAGTAACACTGGGGCTC +
Preference number: 4 (lower is better)
Translates to: AAMGVASRMMMTAPMTLKPAVLG*PVTLGL
Trigger: GAGCCCCAGTGTTACTGGTCAGCCCAACACTGCTGG...CTTCAGTGTCATTGGAGCTGTCATCATCATCCTACTGGCCACGCCCATTGCCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp TGCCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTTGGCGAGCAGCATGGTaGTGCCCAGCAGTGTTGGGC +
Preference number: 4 (lower is better)
Translates to: CQRPDVYLKWGASVFQLLWRAAW*CPAVLG
Trigger: GCCCAACACTGCTGGGCATCACCATGCTGCTCGCCA...AAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp AGGAGCTCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACGTGGCCAAGTCCATaGAGCGCTGAGCATCCACGG +
Preference number: 4 (lower is better)
Translates to: RSSEGAPHSRTSPLSRTITWPSP*SAEHPR
Trigger: CCGTGGATGCTCAGCGCTTCATGGACTTGGCCACGT...GATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGAGCTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GATACCAGATTCTTGCCCGTGGGCACCATCCCTTCTGCTCTTGACTTTTGCTGCGAACTCTACACGGCCTaGATGGGGCCAGGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: DTRFLPVGTIPSALDFCCELYTA*MGPGAG
Trigger: CCCAGCACCTGGCCCCATTCAGGCCGTGTAGAGTTC...GCAGCAAAAGTCAAGAGCAGAAGGGATGGTGCCCACGGGCAAGAATCTGGTATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp AGGAGCTCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCATGACCAGAGGTCACTaGTCTCCAGGGGCTGGCGGT +
Preference number: 4 (lower is better)
Translates to: RSSEGAPHSRTSPLSRTIMTRGH*SPGAGG
Trigger: ACCGCCAGCCCCTGGAGAGCAGTGACCTCTGGTCAT...GATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGAGCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp TATAGCAGGTCCAGGTGCAAGCGACGGGAGGCAAAGATGCCCCCGATGGACACAAGGGCTAGGATGACTTaGAGAGGGGCTGACCAGATC +
Preference number: 4 (lower is better)
Translates to: YSRSRCKRREAKMPPMDTRARMT*RGADQI
Trigger: GATCTGGTCAGCCCCTCTGCAAGTCATCCTAGCCCT...TGTGTCCATCGGGGGCATCTTTGCCTCCCGTCGCTTGCACCTGGACCTGCTATA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp TCCAGGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCAAATATTGCTGCACCTTaGAAGATGCCCAAGGCCCCA +
Preference number: 4 (lower is better)
Translates to: SRVAGSCLDSGILALQSSNIAAP*KMPKAP
Trigger: TGGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATT...TGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp GCTGTCGCTGCCCCACACTCAGGTTCTCTCCACCTTCTGCACACTCATGGTTCACTCATGACTTTGTCCTaGAAGGCCAGCTCCCAGGCG +
Preference number: 4 (lower is better)
Translates to: AVAAPHSGSLHLLHTHGSLMTLS*KASSQA
Trigger: CGCCTGGGAGCTGGCCTTCCAGGACAAAGTCATGAG...TGAACCATGAGTGTGCAGAAGGTGGAGAGAACCTGAGTGTGGGGCAGCGACAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CAA 72 bp AGCTCCAGCCTTCTGCAGTTCGGCTATGCTGCTGTGTaGCTGGCTGGTATCCCCACTCTGCAGGTGCTTTCC +
Preference number: 4 (lower is better)
Translates to: SSSLLQFGYAAV*LAGIPTLQVLS
Trigger: GGAAAGCACCTGCAGAGTGGGGATACCAGCCAGCAACACAGCAGCATAGCCGAACTGCAGAAGGCTGGAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130671.8
CDS-3UTR TCA 90 bp AGGGTCCAAGTTCATGCGGAGGGAACCCGAGAACAAAACAGGATCCTGTGGAATTGGCGAGCAGCATGGTaGTGCCCAGCAGTGTTGGGC +
Preference number: 4 (lower is better)
Translates to: RVQVHAEGTREQNRILWNWRAAW*CPAVLG
Trigger: GCCCAACACTGCTGGGCATCACCATGCTGCTCGCCA...ATTCCACAGGATCCTGTTTTGTTCTCGGGTTCCCTCCGCATGAACTTGGACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp TATAGCAGGTCCAGGTGCAAGCGACGGGAGGCAAAGATGCCCCCGATGGACACAAAAGACAGCAAAGGTTaGCAGGGCCACCAGGAAAGG +
Preference number: 4 (lower is better)
Translates to: YSRSRCKRREAKMPPMDTKDSKG*QGHQER
Trigger: CCTTTCCTGGTGGCCCTGTCAACCTTTGCTGTCTTT...TGTGTCCATCGGGGGCATCTTTGCCTCCCGTCGCTTGCACCTGGACCTGCTATA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GGAAGCGTAGGTTTCCAGGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCTGCAGTTATCTGCAGTaGGTAAGACACAGAGAGGCC +
Preference number: 4 (lower is better)
Translates to: GSVGFQGCWLMPGLWDPGCSYLQ*VRHREA
Trigger: GGCCTCTCTGTGTCTTACTCACTGCAGATAACTGCA...GCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCTGGAAACCTACGCTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp TGCCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAGTACACTGACAGCTaGACCTGCCCTGTCTGGGCC +
Preference number: 4 (lower is better)
Translates to: CQRPDVYLKWGASVFQLLQYTDS*TCPVWA
Trigger: GGCCCAGACAGGGCAGGTGCAGCTGTCAGTGTACTG...AAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp GTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATAAGGGTCCAAGTTCATaGGGAGGGAACCCGAGAACA +
Preference number: 4 (lower is better)
Translates to: VAGSCLDSGILALQSSLDKGPSS*GGNPRT
Trigger: TGTTCTCGGGTTCCCTCCGCATGAACTTGGACCCTT...ATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp GTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATAAGATGCCTCTTTGCTaGAGGAGCTCAGAGGGTGCA +
Preference number: 4 (lower is better)
Translates to: VAGSCLDSGILALQSSLDKMPLC*RSSEGA
Trigger: TGCACCCTCTGAGCTCCTGCAGCAAAGAGGCATCTT...ATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp CAGGTCCTGCTCAGCGTTGGCATAGGTGCGCAGGAACTCAGCGAAGGCCCCATCAAAGGAAAGAGGCACTaGATTCTGGGCATGGATTCC +
Preference number: 4 (lower is better)
Translates to: QVLLSVGIGAQELSEGPIKGKRH*ILGMDS
Trigger: GGAATCCATGCCCAGAATCCAGTGCCTCTTTCCTTT...GATGGGGCCTTCGCTGAGTTCCTGCGCACCTATGCCAACGCTGAGCAGGACCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp GTCTTTGATACCAGATTCTTGCCCGTGGGCACCATCCCTTCTGCTCTTGACTTTTTCCCGCAGCCTACCTaGCCCACCACGGCCACAAGG +
Preference number: 4 (lower is better)
Translates to: VFDTRFLPVGTIPSALDFFPQPT*PTTATR
Trigger: CCTTGTGGCCGTGGTGGGCCAGGTAGGCTGCGGGAA...AAAGTCAAGAGCAGAAGGGATGGTGCCCACGGGCAAGAATCTGGTATCAAAGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp GGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGGCCAGTGCAGATACATaGTTGCACAGGAAAAGGAAG +
Preference number: 4 (lower is better)
Translates to: GLLAHAWTLGSWPCSPHWASADT*LHRKRK
Trigger: CTTCCTTTTCCTGTGCAACCATGTATCTGCACTGGC...CCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp GGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGGTCCGGATGGTGGACTaGATAAGGTTATCTGTCTCT +
Preference number: 4 (lower is better)
Translates to: GLLAHAWTLGSWPCSPHWVRMVD*IRLSVS
Trigger: AGAGACAGATAACCTTATCCAGTCCACCATCCGGAC...CCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR CAA 72 bp TTTTGGGTTTTGTCTGGGAAGCGTAGGTTTCCAGGGTaGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCC +
Preference number: 4 (lower is better)
Translates to: FWVLSGKRRFPG*LAHAWTLGSWP
Trigger: GGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCTGGAAACCTACGCTTCCCAGACAAAACCCAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CAA 72 bp TGTTGCTGGCTGGTATCCCCACTGTGGGAAGACGAGTaGCTGAGATGCCTCTGCAGGTGCTTTCCTACGGTG +
Preference number: 4 (lower is better)
Translates to: CCWLVSPLWEDE*LRCLCRCFPTV
Trigger: CACCGTAGGAAAGCACCTGCAGAGGCATCTCAGCAACTCGTCTTCCCACAGTGGGGATACCAGCCAGCAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CAA 72 bp AGCTCCAGCCTTCTGCAGTTCGGCTATGCTGCTGTGTaGCTGGCTGGTATCCCCACTGTGGGAAGACGAGTT +
Preference number: 4 (lower is better)
Translates to: SSSLLQFGYAAV*LAGIPTVGRRV
Trigger: AACTCGTCTTCCCACAGTGGGGATACCAGCCAGCAACACAGCAGCATAGCCGAACTGCAGAAGGCTGGAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp AAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCCGGAGAGAGTCATTCTaGATCCAGGCCTGCTGGGGC +
Preference number: 4 (lower is better)
Translates to: KWGASVFQLLQGQIQDEARRESF*IQACWG
Trigger: GCCCCAGCAGGCCTGGATTCAGAATGACTCTCTCCG...GGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCACCCCACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCACCTTCCCTGAACCACTaGCACTGTCATCCTCCGAGG +
Preference number: 4 (lower is better)
Translates to: PEARRVSEVGCICLPASSPSLNH*HCHPPR
Trigger: CCTCGGAGGATGACAGTGTCAGTGGTTCAGGGAAGG...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp ATGGAGAAGGTGATGCCATTCAGTGTGGGAGGTTCACCCCTGGCCCAAGTGAAGTCGGGGTTGCTGGTGTaGCATGTGACATTCCAGTCC +
Preference number: 4 (lower is better)
Translates to: MEKVMPFSVGGSPLAQVKSGLLV*HVTFQS
Trigger: GGACTGGAATGTCACATGGCACACCAGCAACCCCGA...CTTCACTTGGGCCAGGGGTGAACCTCCCACACTGAATGGCATCACCTTCTCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000130671.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp CGAGTTGCTGAGATGCCTCTGCAGGTGCTTTCCTACGGTGTCTGTCACCAGCATATTCCAGTCCCAGAGTaGATCGGAGCCATCAGCGCT +
Preference number: 4 (lower is better)
Translates to: RVAEMPLQVLSYGVCHQHIPVPE*IGAISA
Trigger: AGCGCTGATGGCTCCGATCCACTCTGGGACTGGAAT...ATGCTGGTGACAGACACCGTAGGAAAGCACCTGCAGAGGCATCTCAGCAACTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp TGCCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCTCATGACTTTGTCCTaGAAGGCCAGCTCCCAGGCG +
Preference number: 4 (lower is better)
Translates to: CQRPDVYLKWGASVFQLLLMTLS*KASSQA
Trigger: CGCCTGGGAGCTGGCCTTCCAGGACAAAGTCATGAG...AAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp GTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATCTGTGTCCAGCTCCTTaGAGAATCGGTTCACTAGGT +
Preference number: 4 (lower is better)
Translates to: VAGSCLDSGILALQSSLDLCPAP*RIGSLG
Trigger: ACCTAGTGAACCGATTCTCCAAGGAGCTGGACACAG...ATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR CAA 72 bp CCGACAGTAGGACGCAAGCCCAGGTATTTATGGACTTaGCCATTCTGCCTCACTGCCAGACTCCAGGCAGCT +
Preference number: 4 (lower is better)
Translates to: PTVGRKPRYLWT*PFCLTARLQAA
Trigger: AGCTGCCTGGAGTCTGGCAGTGAGGCAGAATGGCAAAGTCCATAAATACCTGGGCTTGCGTCCTACTGTCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR CAA 72 bp GGACACAGCCATGGAGTAGCCAAATATTGCTGCACCTaGCAAGATGCCCAAGGCCCCATAGACACTCAGCCG +
Preference number: 4 (lower is better)
Translates to: GHSHGVAKYCCT*QDAQGPIDTQP
Trigger: CGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp ACACTGACTCCCAGCAAGGTCTCATTGAAGTGTGAGTACACAGGGGAACGGCTGTGCTGGTGTGCCATGTaGCATTCCAGTCCCAGAGTG +
Preference number: 4 (lower is better)
Translates to: TLTPSKVSLKCEYTGERLCWCAM*HSSPRV
Trigger: CACTCTGGGACTGGAATGTCACATGGCACACCAGCA...CAGCCGTTCCCCTGTGTACTCACACTTCAATGAGACCTTGCTGGGAGTCAGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GTCACTCTGGTGAATGAAGCGCTCCTGCTCCTCAAAAGCACGGATGACACTGACTGCTGGTGTGCCATGTaGCATTCCAGTCCCAGAGTG +
Preference number: 4 (lower is better)
Translates to: VTLVNEALLLLKSTDDTDCWCAM*HSSPRV
Trigger: CACTCTGGGACTGGAATGTCACATGGCACACCAGCA...GTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCATTCACCAGAGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GTCATCTGTCCAGAGGCTCAGCCAATAGTTAGAGGCCAGTGCAGATACATGGTTCCAGCAGTGTTGGGCTaGCCAGTAACACTGGGGCTC +
Preference number: 4 (lower is better)
Translates to: VICPEAQPIVRGQCRYMVPAVLG*PVTLGL
Trigger: GAGCCCCAGTGTTACTGGTCAGCCCAACACTGCTGG...AACCATGTATCTGCACTGGCCTCTAACTATTGGCTGAGCCTCTGGACAGATGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GTCACTCTGGTGAATGAAGCGCTCCTGCTCCTCAAAAGCACGGATGACACTGACCCGATCCTTGTGGGGTaGCTTGACAATCAGTGCCTC +
Preference number: 4 (lower is better)
Translates to: VTLVNEALLLLKSTDDTDPILVG*LDNQCL
Trigger: GAGGCACTGATTGTCAAGTCACCCCACAAGGATCGG...GTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCATTCACCAGAGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATGACTTGCAGAGGGGCTaGCCAGATCATGTTAATGTA +
Preference number: 4 (lower is better)
Translates to: VAGSCLDSGILALQSSLDDLQRG*PDHVNV
Trigger: TACATTAACATGATCTGGTCAGCCCCTCTGCAAGTC...ATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp CTCATTGGATATGCCAGAGACCAGCTCACACCAAGCCAGCATCCTTGGCCATGCAAAGACAGCAAAGGTTaGCAGGGCCACCAGGAAAGG +
Preference number: 4 (lower is better)
Translates to: LIGYARDQLTPSQHPWPCKDSKG*QGHQER
Trigger: CCTTTCCTGGTGGCCCTGTCAACCTTTGCTGTCTTT...GCATGGCCAAGGATGCTGGCTTGGTGTGAGCTGGTCTCTGGCATATCCAATGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp GGAATGATGGTGATCTTGAAGCGCAGGTTGTGCAGGCCGATCTTGGCGATGTTGTCGGGGTTGCTGGTGTaGCATGTGACATTCCAGTCC +
Preference number: 4 (lower is better)
Translates to: GMMVILKRRLCRPILAMLSGLLV*HVTFQS
Trigger: GGACTGGAATGTCACATGGCACACCAGCAACCCCGA...CAACATCGCCAAGATCGGCCTGCACAACCTGCGCTTCAAGATCACCATCATTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp ATGAAGCGCTCCTGCTCCTCAAAAGCACGGATGACACTGACTCCCAGCAAGGTCAAAGTACTGGTGGAGTaGCAGTGTCTGCAGACAGGC +
Preference number: 4 (lower is better)
Translates to: MKRSCSSKARMTLTPSKVKVLVE*QCLQTG
Trigger: GCCTGTCTGCAGACACTGGCACTCCACCAGTACTTT...GACCTTGCTGGGAGTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp AGGAGCTCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCAAAGTACTGGTGGAGTaGCAGTGTCTGCAGACAGGC +
Preference number: 4 (lower is better)
Translates to: RSSEGAPHSRTSPLSRTIKVLVE*QCLQTG
Trigger: GCCTGTCTGCAGACACTGGCACTCCACCAGTACTTT...GATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGAGCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp GTCACTCTGGTGAATGAAGCGCTCCTGCTCCTCAAAAGCACGGATGACACTGACATTCCAGTCCCAGAGTaGATCGGAGCCATCAGCGCT +
Preference number: 4 (lower is better)
Translates to: VTLVNEALLLLKSTDDTDIPVPE*IGAISA
Trigger: AGCGCTGATGGCTCCGATCCACTCTGGGACTGGAAT...GTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCATTCACCAGAGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp CCTCATTGGATATGCCAGAGACCAGCTCACACCAAGCCAGCATCCTTGGCCATGGCTTGCTGGGATCTTTaGGAGGGGCATACACAATCC +
Preference number: 4 (lower is better)
Translates to: PHWICQRPAHTKPASLAMACWDL*EGHTQS
Trigger: GGATTGTGTATGCCCCTCCCAAAGATCCCAGCAAGC...CATGGCCAAGGATGCTGGCTTGGTGTGAGCTGGTCTCTGGCATATCCAATGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp CTCATTGGATATGCCAGAGACCAGCTCACACCAAGCCAGCATCCTTGGCCATGCCCACCTGGTAGGTCTTaGTCTTCATGGCCATCACAG +
Preference number: 4 (lower is better)
Translates to: LIGYARDQLTPSQHPWPCPPGRS*SSWPSQ
Trigger: CTGTGATGGCCATGAAGACCAAGACCTACCAGGTGG...GCATGGCCAAGGATGCTGGCTTGGTGTGAGCTGGTCTCTGGCATATCCAATGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp CCCAGCAAGGTCTCATTGAAGTGTGAGTACACAGGGGAACGGCTGACAGACTCCCCACCTGGTAGGTCTTaGTCTTCATGGCCATCACAG +
Preference number: 4 (lower is better)
Translates to: PSKVSLKCEYTGERLTDSPPGRS*SSWPSQ
Trigger: CTGTGATGGCCATGAAGACCAAGACCTACCAGGTGG...GGAGTCTGTCAGCCGTTCCCCTGTGTACTCACACTTCAATGAGACCTTGCTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp AGTGAACCCATGAACATCTTGATGACCTGCGGGATCATGGAGTCCACTGTGTCCCTCATGACTTTGTCCTaGAAGGCCAGCTCCCAGGCG +
Preference number: 4 (lower is better)
Translates to: SEPMNILMTCGIMESTVSLMTLS*KASSQA
Trigger: CGCCTGGGAGCTGGCCTTCCAGGACAAAGTCATGAG...GGACACAGTGGACTCCATGATCCCGCAGGTCATCAAGATGTTCATGGGTTCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCATGCTGTGTTGCTGGCTaGTATCCCCACTGTGGGAAG +
Preference number: 4 (lower is better)
Translates to: PEARRVSEVGCICLPASSCCVAG*YPHCGK
Trigger: CTTCCCACAGTGGGGATACCAGCCAGCAACACAGCA...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCACAGCAAGCCACCTGTTaGCCACAATGCTGGGGTAGT +
Preference number: 4 (lower is better)
Translates to: PEARRVSEVGCICLPASSQQATC*PQCWGS
Trigger: ACTACCCCAGCATTGTGGCCAACAGGTGGCTTGCTG...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR CAA 72 bp ATGGGGCCAGGTGCTGGGTGGAGCTGTTTCCTGGATTaGCCAAGGAGCCTCCTTCTCTGTTTCAGAATACTC +
Preference number: 4 (lower is better)
Translates to: MGPGAGWSCFLD*PRSLLLCFRIL
Trigger: GAGTATTCTGAAACAGAGAAGGAGGCTCCTTGGCAAATCCAGGAAACAGCTCCACCCAGCACCTGGCCCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CAA 72 bp GGATCCTGTGGAATGATGGTGATCTTGAAGCGCAGGTaGTGCAGGCCGATCTTGGCGATGTTGACCCCATCA +
Preference number: 4 (lower is better)
Translates to: GSCGMMVILKRR*CRPILAMLTPS
Trigger: TGATGGGGTCAACATCGCCAAGATCGGCCTGCACAACCTGCGCTTCAAGATCACCATCATTCCACAGGATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp AAAACAGGATCCTGTGGAATGATGGTGATCTTGAAGCGCAGGTTGTGCAGGCCGTGCTGGTGTGCCATGTaGCATTCCAGTCCCAGAGTG +
Preference number: 4 (lower is better)
Translates to: KTGSCGMMVILKRRLCRPCWCAM*HSSPRV
Trigger: CACTCTGGGACTGGAATGTCACATGGCACACCAGCA...CGGCCTGCACAACCTGCGCTTCAAGATCACCATCATTCCACAGGATCCTGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GGTATCCCCACTCTGCAGGTGCTTTCCTACGGTGTCTGTCACCAGCATCCCATTGGTCTGCCCAGCAGATaGTCCACAGAAAGAATCCTA +
Preference number: 4 (lower is better)
Translates to: GIPTLQVLSYGVCHQHPIGLPSR*STERIL
Trigger: TAGGATTCTTTCTGTGGATCATCTGCTGGGCAGACC...AATGGGATGCTGGTGACAGACACCGTAGGAAAGCACCTGCAGAGTGGGGATACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130671.8
CDS-3UTR TCA 90 bp CCCCACACTCAGGTTCTCTCCACCTTCTGCACACTCATGGTTCAGCTTGTCAGGGGTCTGCCCAGCAGATaGTCCACAGAAAGAATCCTA +
Preference number: 4 (lower is better)
Translates to: PHTQVLSTFCTLMVQLVRGLPSR*STERIL
Trigger: TAGGATTCTTTCTGTGGATCATCTGCTGGGCAGACC...CCTGACAAGCTGAACCATGAGTGTGCAGAAGGTGGAGAGAACCTGAGTGTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp TTGACCCCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGGAACAAATGGCGAGCAGCATGGTaGTGCCCAGCAGTGTTGGGC +
Preference number: 4 (lower is better)
Translates to: LTPSMMISPSADSLIRNKWRAAW*CPAVLG
Trigger: GCCCAACACTGCTGGGCATCACCATGCTGCTCGCCA...TTTGTTCCGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp AAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCCCGATCCTTGTGGGGTaGCTTGACAATCAGTGCCTC +
Preference number: 4 (lower is better)
Translates to: KWGASVFQLLQGQIQDEAPILVG*LDNQCL
Trigger: GAGGCACTGATTGTCAAGTCACCCCACAAGGATCGG...GGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCACCCCACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp CCTCATTGGATATGCCAGAGACCAGCTCACACCAAGCCAGCATCCTTGGCCATGCTGACGAAGCAGATATaGAAGTACTGGTGGAGTGCC +
Preference number: 4 (lower is better)
Translates to: PHWICQRPAHTKPASLAMLTKQI*KYWWSA
Trigger: GGCACTCCACCAGTACTTTCATATCTGCTTCGTCAG...CATGGCCAAGGATGCTGGCTTGGTGTGAGCTGGTCTCTGGCATATCCAATGAGG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp CCCCACACTCAGGTTCTCTCCACCTTCTGCACACTCATGGTTCAGCTTGTCAGGCTGACGAAGCAGATATaGAAGTACTGGTGGAGTGCC +
Preference number: 4 (lower is better)
Translates to: PHTQVLSTFCTLMVQLVRLTKQI*KYWWSA
Trigger: GGCACTCCACCAGTACTTTCATATCTGCTTCGTCAG...CCTGACAAGCTGAACCATGAGTGTGCAGAAGGTGGAGAGAACCTGAGTGTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GTTGACCCCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGGAACAAACGTGGCCAAGTCCATaGAGCGCTGAGCATCCACGG +
Preference number: 4 (lower is better)
Translates to: VDPINDDLPFCRLIDPEQTWPSP*SAEHPR
Trigger: CCGTGGATGCTCAGCGCTTCATGGACTTGGCCACGT...TTGTTCCGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp AAAGAAGTAAACCAGACCCAAGGGTGGGATGATGACTGCGGCAATGGGCGTGGCGGAAGCGCAAGATATTaGACAGGGCTAGGGACACAA +
Preference number: 4 (lower is better)
Translates to: KEVNQTQGWDDDCGNGRGGSARY*TGLGTQ
Trigger: TTGTGTCCCTAGCCCTGTTCAATATCTTGCGCTTCC...GCCACGCCCATTGCCGCAGTCATCATCCCACCCTTGGGTCTGGTTTACTTCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp ATGAAGCGCTCCTGCTCCTCAAAAGCACGGATGACACTGACTCCCAGCAAGGTCGGAAGCGCAAGATATTaGACAGGGCTAGGGACACAA +
Preference number: 4 (lower is better)
Translates to: MKRSCSSKARMTLTPSKVGSARY*TGLGTQ
Trigger: TTGTGTCCCTAGCCCTGTTCAATATCTTGCGCTTCC...GACCTTGCTGGGAGTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp CCCCACACTCAGGTTCTCTCCACCTTCTGCACACTCATGGTTCAGCTTGTCAGGGGCTCCAGCTCCTCATaGGACAGAAAAATCCTGAGA +
Preference number: 4 (lower is better)
Translates to: PHTQVLSTFCTLMVQLVRGSSSS*DRKILR
Trigger: TCTCAGGATTTTTCTGTCTCATGAGGAGCTGGAGCC...CCTGACAAGCTGAACCATGAGTGTGCAGAAGGTGGAGAGAACCTGAGTGTGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp CACAGCCATGGAGTAGCCAAATATTGCTGCACCTTGCAAGATGCCCAAGGCCCCGGCTCCAGCTCCTCATaGGACAGAAAAATCCTGAGA +
Preference number: 4 (lower is better)
Translates to: HSHGVAKYCCTLQDAQGPGSSSS*DRKILR
Trigger: TCTCAGGATTTTTCTGTCTCATGAGGAGCTGGAGCC...GGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAGGTCTCATTGAAGTGTaGGTACACAGGGGAACGGCT +
Preference number: 4 (lower is better)
Translates to: PEARRVSEVGCICLPASSGLIEV*VHRGTA
Trigger: AGCCGTTCCCCTGTGTACTCACACTTCAATGAGACC...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp GGCGATGTTGACCCCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGAGGGCTAGGATGACTTaGAGAGGGGCTGACCAGATC +
Preference number: 4 (lower is better)
Translates to: GDVDPINDDLPFCRLIDPRARMT*RGADQI
Trigger: GATCTGGTCAGCCCCTCTGCAAGTCATCCTAGCCCT...CGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAACATCGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp CCCCACACTCAGGTTCTCTCCACCTTCTGCACACTCATGGTTCAGCTTGTCAGGACCTTGAGCTCCTCCTaGCTGATGCTCATGACTTTG +
Preference number: 4 (lower is better)
Translates to: PHTQVLSTFCTLMVQLVRTLSSS*LMLMTL
Trigger: CAAAGTCATGAGCATCAGGCAGGAGGAGCTCAAGGT...CCTGACAAGCTGAACCATGAGTGTGCAGAAGGTGGAGAGAACCTGAGTGTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp GTTCTTGCTAACCATGGGGGTCTCTCTTTGGTCTGTAACTCACACAACCTAGAGTCTCACCGATCTCTGTaGGGTCCCCACTGGGCAGGA +
Preference number: 4 (lower is better)
Translates to: VLANHGGLSLVCNSHNLESHRSL*GPHWAG
Trigger: TCCTGCCCAGTGGGGACCGCACAGAGATCGGTGAGA...CTCTAGGTTGTGTGAGTTACAGACCAAAGAGAGACCCCCATGGTTAGCAAGAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp AAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCGCTATGCTGCTGTGTTaGTGGCTGGTATCCCCACTG +
Preference number: 4 (lower is better)
Translates to: KWGASVFQLLQGQIQDEAAMLLC*WLVSPL
Trigger: CAGTGGGGATACCAGCCAGCAACACAGCAGCATAGC...GGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCACCCCACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp GTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATGTAGCCAAATATTGCTaGACCTTGCAAGATGCCCAA +
Preference number: 4 (lower is better)
Translates to: VAGSCLDSGILALQSSLDVAKYC*TLQDAQ
Trigger: TTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTAC...ATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp GTTCTTGCTAACCATGGGGGTCTCTCTTTGGTCTGTAACTCACACAACCTAGAGGACGGGAGGCAAAGATaGCCCCGATGGACACAGCCA +
Preference number: 4 (lower is better)
Translates to: VLANHGGLSLVCNSHNLEDGRQR*PRWTQP
Trigger: TGGCTGTGTCCATCGGGGGCATCTTTGCCTCCCGTC...CTCTAGGTTGTGTGAGTTACAGACCAAAGAGAGACCCCCATGGTTAGCAAGAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp AGAGGCCGGAAACTCAAGTTACAGATAGTTCTGAGCTGTCCAATATGGGTGCAAGGGTGGGATGATGACTaGGGCAATGGGCGTGGCCAG +
Preference number: 4 (lower is better)
Translates to: RGRKLKLQIVLSCPIWVQGWDDD*GNGRGQ
Trigger: CTGGCCACGCCCATTGCCGCAGTCATCATCCCACCC...TTGCACCCATATTGGACAGCTCAGAACTATCTGTAACTTGAGTTTCCGGCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp GTATTCAGACTGAGGATCAAGTGCAGAGCTGGGCATGGCTGCTCCCTGAATCTAGTGCCGGGAGATGACTaGAAAGAGGGCAGCAAACAG +
Preference number: 4 (lower is better)
Translates to: VFRLRIKCRAGHGCSLNLVPGDD*KEGSKQ
Trigger: CTGTTTGCTGCCCTCTTTGCAGTCATCTCCCGGCAC...TAGATTCAGGGAGCAGCCATGCCCAGCTCTGCACTTGATCCTCAGTCTGAATAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp AAGGGTCCAAGTTCATGCGGAGGGAACCCGAGAACAAAACAGGATCCTGTGGAAATTCCAGTCCCAGAGTaGATCGGAGCCATCAGCGCT +
Preference number: 4 (lower is better)
Translates to: KGPSSCGGNPRTKQDPVEIPVPE*IGAISA
Trigger: AGCGCTGATGGCTCCGATCCACTCTGGGACTGGAAT...TTCCACAGGATCCTGTTTTGTTCTCGGGTTCCCTCCGCATGAACTTGGACCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp GTCACTCTGGTGAATGAAGCGCTCCTGCTCCTCAAAAGCACGGATGACACTGACGCTTGCTGGGATCTTTaGGAGGGGCATACACAATCC +
Preference number: 4 (lower is better)
Translates to: VTLVNEALLLLKSTDDTDACWDL*EGHTQS
Trigger: GGATTGTGTATGCCCCTCCCAAAGATCCCAGCAAGC...GTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCATTCACCAGAGTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAGCTTGCTGGGATCTTTaGGAGGGGCATACACAATCC +
Preference number: 4 (lower is better)
Translates to: PEARRVSEVGCICLPASSACWDL*EGHTQS
Trigger: GGATTGTGTATGCCCCTCCCAAAGATCCCAGCAAGC...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp AAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCCTGTGCGGTCCCCACTaGGCAGGATTTCCAAATCTG +
Preference number: 4 (lower is better)
Translates to: KWGASVFQLLQGQIQDEALCGPH*AGFPNL
Trigger: CAGATTTGGAAATCCTGCCCAGTGGGGACCGCACAG...GGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCACCCCACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp TGCCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTTGTTGGCCACAATGCTaGGGTAGTAGGCCTTCTGGT +
Preference number: 4 (lower is better)
Translates to: CQRPDVYLKWGASVFQLLCWPQC*GSRPSG
Trigger: ACCAGAAGGCCTACTACCCCAGCATTGTGGCCAACA...AAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp GTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTTCTACACGGCCTGAATaGGGCCAGGTGCTGGGTGGA +
Preference number: 4 (lower is better)
Translates to: VHLSSSFFKVRSRMKPNGSTRPE*GQVLGG
Trigger: TCCACCCAGCACCTGGCCCCATTCAGGCCGTGTAGA...ACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAGTGAGGACCGTGTTCTaGAAGCACTTGGTAAAGTCG +
Preference number: 4 (lower is better)
Translates to: PEARRVSEVGCICLPASSVRTVF*KHLVKS
Trigger: CGACTTTACCAAGTGCTTTCAGAACACGGTCCTCAC...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp AGGTTATCTGTCTCTAGGTCCACAGCTGCGGTAGCCTCGTCCAACACTAGAATCAACAAGGCACCCATGTaGGGACCGTGTTCTGAAAGC +
Preference number: 4 (lower is better)
Translates to: RLSVSRSTAAVASSNTRINKAPM*GPCSES
Trigger: GCTTTCAGAACACGGTCCTCACATGGGTGCCTTGTT...GATTCTAGTGTTGGACGAGGCTACCGCAGCTGTGGACCTAGAGACAGATAACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GTCACTCTGGTGAATGAAGCGCTCCTGCTCCTCAAAAGCACGGATGACACTGACGGTCTGCCCAGCAGATaGTCCACAGAAAGAATCCTA +
Preference number: 4 (lower is better)
Translates to: VTLVNEALLLLKSTDDTDGLPSR*STERIL
Trigger: TAGGATTCTTTCTGTGGATCATCTGCTGGGCAGACC...GTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCATTCACCAGAGTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GTCATCTGTCCAGAGGCTCAGCCAATAGTTAGAGGCCAGTGCAGATACATGGTTGCTCGGAGCACTCCCTaGCTTCTTTCCCAGAAAGAG +
Preference number: 4 (lower is better)
Translates to: VICPEAQPIVRGQCRYMVARSTP*LLSQKE
Trigger: CTCTTTCTGGGAAAGAAGTCAGGGAGTGCTCCGAGC...AACCATGTATCTGCACTGGCCTCTAACTATTGGCTGAGCCTCTGGACAGATGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp CAGCCCCACTTATTACCAAGAAGTATTTGGGACACTTGTGACACAGCTTTGTCCCCAGCAGTGTTGGGCTaGCCAGTAACACTGGGGCTC +
Preference number: 4 (lower is better)
Translates to: QPHLLPRSIWDTCDTALSPAVLG*PVTLGL
Trigger: GAGCCCCAGTGTTACTGGTCAGCCCAACACTGCTGG...GGACAAAGCTGTGTCACAAGTGTCCCAAATACTTCTTGGTAATAAGTGGGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp TATAGCAGGTCCAGGTGCAAGCGACGGGAGGCAAAGATGCCCCCGATGGACACATACAGGCTGCTTCCTTaGCTTATCACATTCCTTCTT +
Preference number: 4 (lower is better)
Translates to: YSRSRCKRREAKMPPMDTYRLLP*LITFLL
Trigger: AAGAAGGAATGTGATAAGTCAAGGAAGCAGCCTGTA...TGTGTCCATCGGGGGCATCTTTGCCTCCCGTCGCTTGCACCTGGACCTGCTATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp ATGAGCAATCGTGAGCACAGTACAGTCTTCAAACTGTGTCCGGATGGTGGACTGCCGATCCTTGTGGGGTaGCTTGACAATCAGTGCCTC +
Preference number: 4 (lower is better)
Translates to: MSNREHSTVFKLCPDGGLPILVG*LDNQCL
Trigger: GAGGCACTGATTGTCAAGTCACCCCACAAGGATCGG...CAGTCCACCATCCGGACACAGTTTGAAGACTGTACTGTGCTCACGATTGCTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp CCTCATTGGATATGCCAGAGACCAGCTCACACCAAGCCAGCATCCTTGGCCATGGACTTGCAGAGGGGCTaGCCAGATCATGTTAATGTA +
Preference number: 4 (lower is better)
Translates to: PHWICQRPAHTKPASLAMDLQRG*PDHVNV
Trigger: TACATTAACATGATCTGGTCAGCCCCTCTGCAAGTC...CATGGCCAAGGATGCTGGCTTGGTGTGAGCTGGTCTCTGGCATATCCAATGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp CAAAGATGCCCCCGATGGACACAGCCATGGAGTAGCCAAATATTGCTGCACCTTAAAGACAGCAAAGGTTaGCAGGGCCACCAGGAAAGG +
Preference number: 4 (lower is better)
Translates to: QRCPRWTQPWSSQILLHLKDSKG*QGHQER
Trigger: CCTTTCCTGGTGGCCCTGTCAACCTTTGCTGTCTTT...AAGGTGCAGCAATATTTGGCTACTCCATGGCTGTGTCCATCGGGGGCATCTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAGGCTCCAGCTCCTCATaGGACAGAAAAATCCTGAGA +
Preference number: 4 (lower is better)
Translates to: PEARRVSEVGCICLPASSGSSSS*DRKILR
Trigger: TCTCAGGATTTTTCTGTCTCATGAGGAGCTGGAGCC...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GTCTTTGATACCAGATTCTTGCCCGTGGGCACCATCCCTTCTGCTCTTGACTTTTTCAGGTCACTCTGGTaGATGAAGCGCTCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: VFDTRFLPVGTIPSALDFFRSLW*MKRSCS
Trigger: GGAGCAGGAGCGCTTCATTCACCAGAGTGACCTGAA...AAAGTCAAGAGCAGAAGGGATGGTGCCCACGGGCAAGAATCTGGTATCAAAGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp ATGCACTCTTCTGTAACCAACACGACTATAGGTGACAGAGAGCTGGCAAGGCCATCGGGGTTGCTGGTGTaGCATGTGACATTCCAGTCC +
Preference number: 4 (lower is better)
Translates to: MHSSVTNTTIGDRELARPSGLLV*HVTFQS
Trigger: GGACTGGAATGTCACATGGCACACCAGCAACCCCGA...TGGCCTTGCCAGCTCTCTGTCACCTATAGTCGTGTTGGTTACAGAAGAGTGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp CGGATGACACTGACTCCCAGCAAGGTCTCATTGAAGTGTGAGTACACAGGGGAAAAAGTACTGGTGGAGTaGCAGTGTCTGCAGACAGGC +
Preference number: 4 (lower is better)
Translates to: RMTLTPSKVSLKCEYTGEKVLVE*QCLQTG
Trigger: GCCTGTCTGCAGACACTGGCACTCCACCAGTACTTT...TTCCCCTGTGTACTCACACTTCAATGAGACCTTGCTGGGAGTCAGTGTCATCCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp GGAAGCGTAGGTTTCCAGGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCGGAAGATTTTCTAGCTaGATTGGTGATCAAAAGAGC +
Preference number: 4 (lower is better)
Translates to: GSVGFQGCWLMPGLWDPGGRFSS*IGDQKS
Trigger: GCTCTTTTGATCACCAATGCAGCTAGAAAATCTTCC...GCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCTGGAAACCTACGCTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp ATATTGCTGCACCTTGCAAGATGCCCAAGGCCCCATAGACACTCAGCCGAAAATAGGGCTAGGATGACTTaGAGAGGGGCTGACCAGATC +
Preference number: 4 (lower is better)
Translates to: ILLHLARCPRPHRHSAENRARMT*RGADQI
Trigger: GATCTGGTCAGCCCCTCTGCAAGTCATCCTAGCCCT...ATTTTCGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAGCAATAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp TGCCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTACCTTGAGCTCCTCCTaGCTGATGCTCATGACTTTG +
Preference number: 4 (lower is better)
Translates to: CQRPDVYLKWGASVFQLLTLSSS*LMLMTL
Trigger: CAAAGTCATGAGCATCAGGCAGGAGGAGCTCAAGGT...AAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp GTCACTCTGGTGAATGAAGCGCTCCTGCTCCTCAAAAGCACGGATGACACTGACACCTTGAGCTCCTCCTaGCTGATGCTCATGACTTTG +
Preference number: 4 (lower is better)
Translates to: VTLVNEALLLLKSTDDTDTLSSS*LMLMTL
Trigger: CAAAGTCATGAGCATCAGGCAGGAGGAGCTCAAGGT...GTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCATTCACCAGAGTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp GGAAGCGTAGGTTTCCAGGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCACAGGCTTCCATAACTaGCTTGTAGTAATTTTCCTG +
Preference number: 4 (lower is better)
Translates to: GSVGFQGCWLMPGLWDPGTGFHN*LVVIFL
Trigger: CAGGAAAATTACTACAAGGCAGTTATGGAAGCCTGT...GCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCTGGAAACCTACGCTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp GTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTACTGACAGCTGCACCTaGCCTGTCTGGGCCTTGTCT +
Preference number: 4 (lower is better)
Translates to: VHLSSSFFKVRSRMKPNGTDSCT*PVWALS
Trigger: AGACAAGGCCCAGACAGGGCAGGTGCAGCTGTCAGT...ACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp GTTCTTGCTAACCATGGGGGTCTCTCTTTGGTCTGTAACTCACACAACCTAGAGCCAGCACTGAGGCTGTaGCGGGAGATGACTGCAAAG +
Preference number: 4 (lower is better)
Translates to: VLANHGGLSLVCNSHNLEPALRL*REMTAK
Trigger: CTTTGCAGTCATCTCCCGGCACAGCCTCAGTGCTGG...CTCTAGGTTGTGTGAGTTACAGACCAAAGAGAGACCCCCATGGTTAGCAAGAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp CTCCACCTTCTGCACACTCATGGTTCAGCTTGTCAGGCAAAGCTGACACAAAGCAGAGGCACTGGATTCTaGGCATGGATTCCGGTCATG +
Preference number: 4 (lower is better)
Translates to: LHLLHTHGSACQAKLTQSRGTGF*AWIPVM
Trigger: CATGACCGGAATCCATGCCCAGAATCCAGTGCCTCT...GCTTTGTGTCAGCTTTGCCTGACAAGCTGAACCATGAGTGTGCAGAAGGTGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp AAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCGCTTGCTGGGATCTTTaGGAGGGGCATACACAATCC +
Preference number: 4 (lower is better)
Translates to: KWGASVFQLLQGQIQDEAACWDL*EGHTQS
Trigger: GGATTGTGTATGCCCCTCCCAAAGATCCCAGCAAGC...GGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCACCCCACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp GGCGATGTTGACCCCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGCCACCTGGTAGGTCTTaGTCTTCATGGCCATCACAG +
Preference number: 4 (lower is better)
Translates to: GDVDPINDDLPFCRLIDPPPGRS*SSWPSQ
Trigger: CTGTGATGGCCATGAAGACCAAGACCTACCAGGTGG...CGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAACATCGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGCTCGGAGCACTCCCTaGCTTCTTTCCCAGAAAGAG +
Preference number: 4 (lower is better)
Translates to: VHLSSSFFKVRSRMKPNGARSTP*LLSQKE
Trigger: CTCTTTCTGGGAAAGAAGTCAGGGAGTGCTCCGAGC...ACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp CAAAGAAACTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCCCGATCCTTGTGGGGTaGCTTGACAATCAGTGCCTC +
Preference number: 4 (lower is better)
Translates to: QRNSWVIAEHCIAGPGASPILVG*LDNQCL
Trigger: GAGGCACTGATTGTCAAGTCACCCCACAAGGATCGG...GCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAAACATCATCAGGTCATaGAGGGCCTTGTACAGGAAG +
Preference number: 4 (lower is better)
Translates to: PEARRVSEVGCICLPASSNIIRS*RALYRK
Trigger: CTTCCTGTACAAGGCCCTTCATGACCTGATGATGTT...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp CTGCACCTTGCAAGATGCCCAAGGCCCCATAGACACTCAGCCGAAAATTCCTGTAACATCATCAGGTCATaGAGGGCCTTGTACAGGAAG +
Preference number: 4 (lower is better)
Translates to: LHLARCPRPHRHSAENSCNIIRS*RALYRK
Trigger: CTTCCTGTACAAGGCCCTTCATGACCTGATGATGTT...ACAGGAATTTTCGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp AAAACAGGATCCTGTGGAATGATGGTGATCTTGAAGCGCAGGTTGTGCAGGCCGCTGACGAAGCAGATATaGAAGTACTGGTGGAGTGCC +
Preference number: 4 (lower is better)
Translates to: KTGSCGMMVILKRRLCRPLTKQI*KYWWSA
Trigger: GGCACTCCACCAGTACTTTCATATCTGCTTCGTCAG...CGGCCTGCACAACCTGCGCTTCAAGATCACCATCATTCCACAGGATCCTGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp TTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTACGTGGCCAAGTCCATaGAGCGCTGAGCATCCACGG +
Preference number: 4 (lower is better)
Translates to: FFKVRSRMKPNGDRRLSITWPSP*SAEHPR
Trigger: CCGTGGATGCTCAGCGCTTCATGGACTTGGCCACGT...AATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GGAATGATGGTGATCTTGAAGCGCAGGTTGTGCAGGCCGATCTTGGCGATGTTGGACTTGCAGAGGGGCTaGCCAGATCATGTTAATGTA +
Preference number: 4 (lower is better)
Translates to: GMMVILKRRLCRPILAMLDLQRG*PDHVNV
Trigger: TACATTAACATGATCTGGTCAGCCCCTCTGCAAGTC...CAACATCGCCAAGATCGGCCTGCACAACCTGCGCTTCAAGATCACCATCATTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp ATGAAGCGCTCCTGCTCCTCAAAAGCACGGATGACACTGACTCCCAGCAAGGTCTCTCGTTCATCAGCTTaGTTCGGTTGTCTTTGCTCT +
Preference number: 4 (lower is better)
Translates to: MKRSCSSKARMTLTPSKVSRSSA*FGCLCS
Trigger: AGAGCAAAGACAACCGAATCAAGCTGATGAACGAGA...GACCTTGCTGGGAGTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp CACAGCCATGGAGTAGCCAAATATTGCTGCACCTTGCAAGATGCCCAAGGCCCCTCTCGTTCATCAGCTTaGTTCGGTTGTCTTTGCTCT +
Preference number: 4 (lower is better)
Translates to: HSHGVAKYCCTLQDAQGPSRSSA*FGCLCS
Trigger: AGAGCAAAGACAACCGAATCAAGCTGATGAACGAGA...GGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp AAGGGTCCAAGTTCATGCGGAGGGAACCCGAGAACAAAACAGGATCCTGTGGAAGGAAGCGCAAGATATTaGACAGGGCTAGGGACACAA +
Preference number: 4 (lower is better)
Translates to: KGPSSCGGNPRTKQDPVEGSARY*TGLGTQ
Trigger: TTGTGTCCCTAGCCCTGTTCAATATCTTGCGCTTCC...TTCCACAGGATCCTGTTTTGTTCTCGGGTTCCCTCCGCATGAACTTGGACCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GGGACTGACATTAGAGCCAAAATTCAAAGCAAGTATGAACTGTGGCTGGCATCACTGCTTCTGGCCCCCTaGCAGGTTCACACCCTTCTC +
Preference number: 4 (lower is better)
Translates to: GTDIRAKIQSKYELWLASLLLAP*QVHTLL
Trigger: GAGAAGGGTGTGAACCTGTCAGGGGGCCAGAAGCAG...TGATGCCAGCCACAGTTCATACTTGCTTTGAATTTTGGCTCTAATGTCAGTCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp GTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGTAGTTCCAGTACACTaGCAGCTGCACCTGCCCTGT +
Preference number: 4 (lower is better)
Translates to: VHLSSSFFKVRSRMKPNGVVPVH*QLHLPC
Trigger: ACAGGGCAGGTGCAGCTGTCAGTGTACTGGAACTAC...ACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp GTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGGTCACTCTGGTGAATaGAGCGCTCCTGCTCCTCAA +
Preference number: 4 (lower is better)
Translates to: VHLSSSFFKVRSRMKPNGGHSGE*SAPAPQ
Trigger: TTGAGGAGCAGGAGCGCTTCATTCACCAGAGTGACC...ACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp GTCACTCTGGTGAATGAAGCGCTCCTGCTCCTCAAAAGCACGGATGACACTGACGCTGACAAACAGCAGTaGTGTGTAAAAGTAGCCCTG +
Preference number: 4 (lower is better)
Translates to: VTLVNEALLLLKSTDDTDADKQQ*CVKVAL
Trigger: CAGGGCTACTTTTACACAGCACTGCTGTTTGTCAGC...GTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCATTCACCAGAGTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp CAGCCCCACTTATTACCAAGAAGTATTTGGGACACTTGTGACACAGCTTTGTCCCAGCGTTGGCATAGGTaGGCAGGAACTCAGCGAAGG +
Preference number: 4 (lower is better)
Translates to: QPHLLPRSIWDTCDTALSQRWHR*AGTQRR
Trigger: CCTTCGCTGAGTTCCTGCGCACCTATGCCAACGCTG...GGACAAAGCTGTGTCACAAGTGTCCCAAATACTTCTTGGTAATAAGTGGGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp GATACCAGATTCTTGCCCGTGGGCACCATCCCTTCTGCTCTTGACTTTTGCTGCGTTCTCTCCACCTTCTaGACACTCATGGTTCAGCTT +
Preference number: 4 (lower is better)
Translates to: DTRFLPVGTIPSALDFCCVLSTF*TLMVQL
Trigger: AAGCTGAACCATGAGTGTGCAGAAGGTGGAGAGAAC...GCAGCAAAAGTCAAGAGCAGAAGGGATGGTGCCCACGGGCAAGAATCTGGTATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp GTTCTTGCTAACCATGGGGGTCTCTCTTTGGTCTGTAACTCACACAACCTAGAGATTCCAGTCCCAGAGTaGATCGGAGCCATCAGCGCT +
Preference number: 4 (lower is better)
Translates to: VLANHGGLSLVCNSHNLEIPVPE*IGAISA
Trigger: AGCGCTGATGGCTCCGATCCACTCTGGGACTGGAAT...CTCTAGGTTGTGTGAGTTACAGACCAAAGAGAGACCCCCATGGTTAGCAAGAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp GTCTTTGATACCAGATTCTTGCCCGTGGGCACCATCCCTTCTGCTCTTGACTTTCCACCTGGTAGGTCTTaGTCTTCATGGCCATCACAG +
Preference number: 4 (lower is better)
Translates to: VFDTRFLPVGTIPSALDFPPGRS*SSWPSQ
Trigger: CTGTGATGGCCATGAAGACCAAGACCTACCAGGTGG...AAAGTCAAGAGCAGAAGGGATGGTGCCCACGGGCAAGAATCTGGTATCAAAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp GACCTTAGAGGCCGGAAACTCAAGTTACAGATAGTTCTGAGCTGTCCAATATGGGGTCCTGCTCAGCGTTaGCATAGGTGCGCAGGAACT +
Preference number: 4 (lower is better)
Translates to: DLRGRKLKLQIVLSCPIWGPAQR*HRCAGT
Trigger: AGTTCCTGCGCACCTATGCCAACGCTGAGCAGGACC...CCATATTGGACAGCTCAGAACTATCTGTAACTTGAGTTTCCGGCCTCTAAGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp GTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTTGCACCTGCCCTGTCTaGGCCTTGTCTGCTTCCATT +
Preference number: 4 (lower is better)
Translates to: VHLSSSFFKVRSRMKPNGCTCPV*ALSASI
Trigger: AATGGAAGCAGACAAGGCCCAGACAGGGCAGGTGCA...ACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR CAA 72 bp CATAGACCTTATGTGAGGAGTGAGCCCTCCCCAGCTTaGAACAGGAAGAAACAGAAAGCAGGGGCAAGGTGT +
Preference number: 4 (lower is better)
Translates to: HRPYVRSEPSPA*NRKKQKAGARC
Trigger: ACACCTTGCCCCTGCTTTCTGTTTCTTCCTGTTCAAAGCTGGGGAGGGCTCACTCCTCACATAAGGTCTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR CAA 72 bp GTTCTCTTCTGGCCCTATAAGGAACTCTGGCTGTCTTaGATACCAGATTCTTGCCCGTGGGCACCATCCCTT +
Preference number: 4 (lower is better)
Translates to: VLFWPYKELWLS*IPDSCPWAPSL
Trigger: AAGGGATGGTGCCCACGGGCAAGAATCTGGTATCAAAGACAGCCAGAGTTCCTTATAGGGCCAGAAGAGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR CAA 72 bp GCTCCAATGACACTGAAGAGTGAACCCATGAACATCTaGATGACCTGCGGGATCATGGAGTCCACTGTGTCC +
Preference number: 4 (lower is better)
Translates to: APMTLKSEPMNI*MTCGIMESTVS
Trigger: GGACACAGTGGACTCCATGATCCCGCAGGTCATCAAGATGTTCATGGGTTCACTCTTCAGTGTCATTGGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CAA 72 bp GAGAACAAAACAGGATCCTGTGGAATGATGGTGATCTaGAAGCGCAGGTTGTGCAGGCCGATCTTGGCGATG +
Preference number: 4 (lower is better)
Translates to: ENKTGSCGMMVI*KRRLCRPILAM
Trigger: CATCGCCAAGATCGGCCTGCACAACCTGCGCTTCAAGATCACCATCATTCCACAGGATCCTGTTTTGTTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp AAAGAAGTAAACCAGACCCAAGGGTGGGATGATGACTGCGGCAATGGGCGTGGCCAGTTTTGGTTTTGTTaGGGTGTGTCATCTGGATGT +
Preference number: 4 (lower is better)
Translates to: KEVNQTQGWDDDCGNGRGQFWFC*GVSSGC
Trigger: ACATCCAGATGACACACCTCAACAAAACCAAAACTG...GCCACGCCCATTGCCGCAGTCATCATCCCACCCTTGGGTCTGGTTTACTTCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp AGAGGCCGGAAACTCAAGTTACAGATAGTTCTGAGCTGTCCAATATGGGTGCAAGCTCGGAGCACTCCCTaGCTTCTTTCCCAGAAAGAG +
Preference number: 4 (lower is better)
Translates to: RGRKLKLQIVLSCPIWVQARSTP*LLSQKE
Trigger: CTCTTTCTGGGAAAGAAGTCAGGGAGTGCTCCGAGC...TTGCACCCATATTGGACAGCTCAGAACTATCTGTAACTTGAGTTTCCGGCCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCATCTCGTTCATCAGCTTaGTTCGGTTGTCTTTGCTCT +
Preference number: 4 (lower is better)
Translates to: PEARRVSEVGCICLPASSSRSSA*FGCLCS
Trigger: AGAGCAAAGACAACCGAATCAAGCTGATGAACGAGA...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp TGGCCCTTTGGAGCTAGAGATATAGGCAACTGTAAGACACTGAACACAGGTGCTGGAACAAACCCAGGGTaGGAGATGATTTCCCAGCTC +
Preference number: 4 (lower is better)
Translates to: WPFGARDIGNCKTLNTGAGTNPG*EMISQL
Trigger: GAGCTGGGAAATCATCTCTCACCCTGGGTTTGTTCC...AGCACCTGTGTTCAGTGTCTTACAGTTGCCTATATCTCTAGCTCCAAAGGGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp TGCCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCATCAGAATACTGACTaGAAGGGTCCAAGTTCATGC +
Preference number: 4 (lower is better)
Translates to: CQRPDVYLKWGASVFQLLHQNTD*KGPSSC
Trigger: GCATGAACTTGGACCCTTTCAGTCAGTATTCTGATG...AAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp ATGAACATCTTGATGACCTGCGGGATCATGGAGTCCACTGTGTCCAGCTCCTTGGCTGACAAACAGCAGTaGTGTGTAAAAGTAGCCCTG +
Preference number: 4 (lower is better)
Translates to: MNILMTCGIMESTVSSSLADKQQ*CVKVAL
Trigger: CAGGGCTACTTTTACACAGCACTGCTGTTTGTCAGC...CAAGGAGCTGGACACAGTGGACTCCATGATCCCGCAGGTCATCAAGATGTTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp TGGCCCTTTGGAGCTAGAGATATAGGCAACTGTAAGACACTGAACACAGGTGCTAAAGTACTGGTGGAGTaGCAGTGTCTGCAGACAGGC +
Preference number: 4 (lower is better)
Translates to: WPFGARDIGNCKTLNTGAKVLVE*QCLQTG
Trigger: GCCTGTCTGCAGACACTGGCACTCCACCAGTACTTT...AGCACCTGTGTTCAGTGTCTTACAGTTGCCTATATCTCTAGCTCCAAAGGGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp GTTCTTGCTAACCATGGGGGTCTCTCTTTGGTCTGTAACTCACACAACCTAGAGACCTGTTGGCCACAATaGTGGGGTAGTAGGCCTTCT +
Preference number: 4 (lower is better)
Translates to: VLANHGGLSLVCNSHNLETCWPQ*WGSRPS
Trigger: AGAAGGCCTACTACCCCAGCATTGTGGCCAACAGGT...CTCTAGGTTGTGTGAGTTACAGACCAAAGAGAGACCCCCATGGTTAGCAAGAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp GTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTACAGCACAATGCAGTTaGCCACACACTCAAGGCGCA +
Preference number: 4 (lower is better)
Translates to: VHLSSSFFKVRSRMKPNGTAQCS*PHTQGA
Trigger: TGCGCCTTGAGTGTGTGGGCAACTGCATTGTGCTGT...ACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp CAGCCCCACTTATTACCAAGAAGTATTTGGGACACTTGTGACACAGCTTTGTCCCACACAAGCTGTCGCTaGCCCACACTCAGGTTCTCT +
Preference number: 4 (lower is better)
Translates to: QPHLLPRSIWDTCDTALSHTSCR*PTLRFS
Trigger: AGAGAACCTGAGTGTGGGGCAGCGACAGCTTGTGTG...GGACAAAGCTGTGTCACAAGTGTCCCAAATACTTCTTGGTAATAAGTGGGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp GTTCTTGCTAACCATGGGGGTCTCTCTTTGGTCTGTAACTCACACAACCTAGAGAGAGGCACTGGATTCTaGGCATGGATTCCGGTCATG +
Preference number: 4 (lower is better)
Translates to: VLANHGGLSLVCNSHNLERGTGF*AWIPVM
Trigger: CATGACCGGAATCCATGCCCAGAATCCAGTGCCTCT...CTCTAGGTTGTGTGAGTTACAGACCAAAGAGAGACCCCCATGGTTAGCAAGAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp AAGAAACTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCGAAGAGGCACTGGATTCTaGGCATGGATTCCGGTCATG +
Preference number: 4 (lower is better)
Translates to: KKLMGDRRTLYSRSRCKRRGTGF*AWIPVM
Trigger: CATGACCGGAATCCATGCCCAGAATCCAGTGCCTCT...TCGCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp CAAAGAAACTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCAGAGGCACTGGATTCTaGGCATGGATTCCGGTCATG +
Preference number: 4 (lower is better)
Translates to: QRNSWVIAEHCIAGPGASRGTGF*AWIPVM
Trigger: CATGACCGGAATCCATGCCCAGAATCCAGTGCCTCT...GCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp TTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTCTCACACGCTGCTTCTaGCCCCCTGACAGGTTCACA +
Preference number: 4 (lower is better)
Translates to: FFKVRSRMKPNGDRRLSILTRCF*PPDRFT
Trigger: TGTGAACCTGTCAGGGGGCCAGAAGCAGCGTGTGAG...AATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp GTATTCAGACTGAGGATCAAGTGCAGAGCTGGGCATGGCTGCTCCCTGAATCTATCACTAGGTTCCCACTaGGTGTACGCTCAAAGAAAC +
Preference number: 4 (lower is better)
Translates to: VFRLRIKCRAGHGCSLNLSLGSH*VYAQRN
Trigger: GTTTCTTTGAGCGTACACCCAGTGGGAACCTAGTGA...TAGATTCAGGGAGCAGCCATGCCCAGCTCTGCACTTGATCCTCAGTCTGAATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp AAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTTTGCTTGGGCCAGGTGCTGGGTaGAGCTGTTTCCTGGATTTG +
Preference number: 4 (lower is better)
Translates to: KVRSRMKPNGDRRLSILLGPGAG*SCFLDL
Trigger: CAAATCCAGGAAACAGCTCCACCCAGCACCTGGCCC...AAGCAAAATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp TTTGGAGCTAGAGATATAGGCAACTGTAAGACACTGAACACAGGTGCTGGGAACAACAAGGCACCCATGTaGGGACCGTGTTCTGAAAGC +
Preference number: 4 (lower is better)
Translates to: FGARDIGNCKTLNTGAGNNKAPM*GPCSES
Trigger: GCTTTCAGAACACGGTCCTCACATGGGTGCCTTGTT...GTTCCCAGCACCTGTGTTCAGTGTCTTACAGTTGCCTATATCTCTAGCTCCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp TCCCGTACGACCTACAATACCCACCTTTTCTCCACCCTCAATGGTGACATTTATAACAAGGCACCCATGTaGGGACCGTGTTCTGAAAGC +
Preference number: 4 (lower is better)
Translates to: SRTTYNTHLFSTLNGDIYNKAPM*GPCSES
Trigger: GCTTTCAGAACACGGTCCTCACATGGGTGCCTTGTT...ATAAATGTCACCATTGAGGGTGGAGAAAAGGTGGGTATTGTAGGTCGTACGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCACAGTTTTGGTTTTGTTaGGGTGTGTCATCTGGATGT +
Preference number: 4 (lower is better)
Translates to: PEARRVSEVGCICLPASSQFWFC*GVSSGC
Trigger: ACATCCAGATGACACACCTCAACAAAACCAAAACTG...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp TTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTGCTCGGAGCACTCCCTaGCTTCTTTCCCAGAAAGAG +
Preference number: 4 (lower is better)
Translates to: FFKVRSRMKPNGDRRLSIARSTP*LLSQKE
Trigger: CTCTTTCTGGGAAAGAAGTCAGGGAGTGCTCCGAGC...AATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp CCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGGAACAAACCCAGGAACATCATCAGGTCATaGAGGGCCTTGTACAGGAAG +
Preference number: 4 (lower is better)
Translates to: PSMMISPSADSLIRNKPRNIIRS*RALYRK
Trigger: CTTCCTGTACAAGGCCCTTCATGACCTGATGATGTT...CCTGGGTTTGTTCCGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTCTGACGAAGCAGATATaGAAGTACTGGTGGAGTGCC +
Preference number: 4 (lower is better)
Translates to: VHLSSSFFKVRSRMKPNGLTKQI*KYWWSA
Trigger: GGCACTCCACCAGTACTTTCATATCTGCTTCGTCAG...ACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GTCTTTGATACCAGATTCTTGCCCGTGGGCACCATCCCTTCTGCTCTTGACTTTGACTTGCAGAGGGGCTaGCCAGATCATGTTAATGTA +
Preference number: 4 (lower is better)
Translates to: VFDTRFLPVGTIPSALDFDLQRG*PDHVNV
Trigger: TACATTAACATGATCTGGTCAGCCCCTCTGCAAGTC...AAAGTCAAGAGCAGAAGGGATGGTGCCCACGGGCAAGAATCTGGTATCAAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp TGGCCCTTTGGAGCTAGAGATATAGGCAACTGTAAGACACTGAACACAGGTGCTGGAAGCGCAAGATATTaGACAGGGCTAGGGACACAA +
Preference number: 4 (lower is better)
Translates to: WPFGARDIGNCKTLNTGAGSARY*TGLGTQ
Trigger: TTGTGTCCCTAGCCCTGTTCAATATCTTGCGCTTCC...AGCACCTGTGTTCAGTGTCTTACAGTTGCCTATATCTCTAGCTCCAAAGGGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp AAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTTTGCTTCACCCCTGGCCCAAGTaGAGGTTGCATTCTTCACAG +
Preference number: 4 (lower is better)
Translates to: KVRSRMKPNGDRRLSILLHPWPK*RLHSSQ
Trigger: CTGTGAAGAATGCAACCTTCACTTGGGCCAGGGGTG...AAGCAAAATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp TTTGGAGCTAGAGATATAGGCAACTGTAAGACACTGAACACAGGTGCTGGGAACCAGGAATGGAGAAGGTaGTGCCATTCAGTGTGGGAG +
Preference number: 4 (lower is better)
Translates to: FGARDIGNCKTLNTGAGNQEWRR*CHSVWE
Trigger: CTCCCACACTGAATGGCATCACCTTCTCCATTCCTG...GTTCCCAGCACCTGTGTTCAGTGTCTTACAGTTGCCTATATCTCTAGCTCCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp GTCATCTGTCCAGAGGCTCAGCCAATAGTTAGAGGCCAGTGCAGATACATGGTTGCTGACAAACAGCAGTaGTGTGTAAAAGTAGCCCTG +
Preference number: 4 (lower is better)
Translates to: VICPEAQPIVRGQCRYMVADKQQ*CVKVAL
Trigger: CAGGGCTACTTTTACACAGCACTGCTGTTTGTCAGC...AACCATGTATCTGCACTGGCCTCTAACTATTGGCTGAGCCTCTGGACAGATGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp TTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTAGGGCTAGGATGACTTaGAGAGGGGCTGACCAGATC +
Preference number: 4 (lower is better)
Translates to: FFKVRSRMKPNGDRRLSIRARMT*RGADQI
Trigger: GATCTGGTCAGCCCCTCTGCAAGTCATCCTAGCCCT...AATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp GTCTTTGATACCAGATTCTTGCCCGTGGGCACCATCCCTTCTGCTCTTGACTTTATAATTCCCGAGGATTaGACTCCCTTCCTCCGTTCA +
Preference number: 4 (lower is better)
Translates to: VFDTRFLPVGTIPSALDFIIPED*TPFLRS
Trigger: TGAACGGAGGAAGGGAGTCCAATCCTCGGGAATTAT...AAAGTCAAGAGCAGAAGGGATGGTGCCCACGGGCAAGAATCTGGTATCAAAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp ATATTGCTGCACCTTGCAAGATGCCCAAGGCCCCATAGACACTCAGCCGAAAATAAAGGAAAGAGGCACTaGATTCTGGGCATGGATTCC +
Preference number: 4 (lower is better)
Translates to: ILLHLARCPRPHRHSAENKGKRH*ILGMDS
Trigger: GGAATCCATGCCCAGAATCCAGTGCCTCTTTCCTTT...ATTTTCGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAGCAATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp GTATTCAGACTGAGGATCAAGTGCAGAGCTGGGCATGGCTGCTCCCTGAATCTAAGGTCTTGGTCTTCATaGCCATCACAGCATTTAAGG +
Preference number: 4 (lower is better)
Translates to: VFRLRIKCRAGHGCSLNLRSWSS*PSQHLR
Trigger: CCTTAAATGCTGTGATGGCCATGAAGACCAAGACCT...TAGATTCAGGGAGCAGCCATGCCCAGCTCTGCACTTGATCCTCAGTCTGAATAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp ATGAACATCTTGATGACCTGCGGGATCATGGAGTCCACTGTGTCCAGCTCCTTGAGGTCTTGGTCTTCATaGCCATCACAGCATTTAAGG +
Preference number: 4 (lower is better)
Translates to: MNILMTCGIMESTVSSSLRSWSS*PSQHLR
Trigger: CCTTAAATGCTGTGATGGCCATGAAGACCAAGACCT...CAAGGAGCTGGACACAGTGGACTCCATGATCCCGCAGGTCATCAAGATGTTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp TTCTCTGGGACTGACATTAGAGCCAAAATTCAAAGCAAGTATGAACTGTGGCTGTGCTGGTGTGCCATGTaGCATTCCAGTCCCAGAGTG +
Preference number: 4 (lower is better)
Translates to: FSGTDIRAKIQSKYELWLCWCAM*HSSPRV
Trigger: CACTCTGGGACTGGAATGTCACATGGCACACCAGCA...CAGCCACAGTTCATACTTGCTTTGAATTTTGGCTCTAATGTCAGTCCCAGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp AAAACAGGATCCTGTGGAATGATGGTGATCTTGAAGCGCAGGTTGTGCAGGCCGCAGTTTTGGTTTTGTTaGGGTGTGTCATCTGGATGT +
Preference number: 4 (lower is better)
Translates to: KTGSCGMMVILKRRLCRPQFWFC*GVSSGC
Trigger: ACATCCAGATGACACACCTCAACAAAACCAAAACTG...CGGCCTGCACAACCTGCGCTTCAAGATCACCATCATTCCACAGGATCCTGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp AAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCAGGTACCACTTCTTCTaGTGTGTCCTCCTTATTCAA +
Preference number: 4 (lower is better)
Translates to: KWGASVFQLLQGQIQDEARYHFF*CVLLIQ
Trigger: TTGAATAAGGAGGACACATCAGAAGAAGTGGTACCT...GGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCACCCCACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp CAAAGATGCCCCCGATGGACACAGCCATGGAGTAGCCAAATATTGCTGCACCTTAGGTACCACTTCTTCTaGTGTGTCCTCCTTATTCAA +
Preference number: 4 (lower is better)
Translates to: QRCPRWTQPWSSQILLHLRYHFF*CVLLIQ
Trigger: TTGAATAAGGAGGACACATCAGAAGAAGTGGTACCT...AAGGTGCAGCAATATTTGGCTACTCCATGGCTGTGTCCATCGGGGGCATCTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp ATGAACATCTTGATGACCTGCGGGATCATGGAGTCCACTGTGTCCAGCTCCTTGTACAGGCTGCTTCCTTaGCTTATCACATTCCTTCTT +
Preference number: 4 (lower is better)
Translates to: MNILMTCGIMESTVSSSLYRLLP*LITFLL
Trigger: AAGAAGGAATGTGATAAGTCAAGGAAGCAGCCTGTA...CAAGGAGCTGGACACAGTGGACTCCATGATCCCGCAGGTCATCAAGATGTTCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp TTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTAAAGACAGCAAAGGTTaGCAGGGCCACCAGGAAAGG +
Preference number: 4 (lower is better)
Translates to: FFKVRSRMKPNGDRRLSIKDSKG*QGHQER
Trigger: CCTTTCCTGGTGGCCCTGTCAACCTTTGCTGTCTTT...AATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp ACAGTACAGTCTTCAAACTGTGTCCGGATGGTGGACTGGATAAGGTTATCTGTCGGCTCCAGCTCCTCATaGGACAGAAAAATCCTGAGA +
Preference number: 4 (lower is better)
Translates to: TVQSSNCVRMVDWIRLSVGSSSS*DRKILR
Trigger: TCTCAGGATTTTTCTGTCTCATGAGGAGCTGGAGCC...GACAGATAACCTTATCCAGTCCACCATCCGGACACAGTTTGAAGACTGTACTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GTTCTTGCTAACCATGGGGGTCTCTCTTTGGTCTGTAACTCACACAACCTAGAGTTGCATTCTTCACAGTaGTGCTATTCCCTTCGCCAC +
Preference number: 4 (lower is better)
Translates to: VLANHGGLSLVCNSHNLELHSSQ*CYSLRH
Trigger: GTGGCGAAGGGAATAGCATCACTGTGAAGAATGCAA...CTCTAGGTTGTGTGAGTTACAGACCAAAGAGAGACCCCCATGGTTAGCAAGAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp TTTGGAGCTAGAGATATAGGCAACTGTAAGACACTGAACACAGGTGCTGGGAACAGAGTAGAAGAGGTCTaGCCAGCAGATGATCCACAG +
Preference number: 4 (lower is better)
Translates to: FGARDIGNCKTLNTGAGNRVEEV*PADDPQ
Trigger: CTGTGGATCATCTGCTGGGCAGACCTCTTCTACTCT...GTTCCCAGCACCTGTGTTCAGTGTCTTACAGTTGCCTATATCTCTAGCTCCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp CCAAATGGTGACAGACGCCTAAGTATTTTGCTTCCTTTTAGTTTGGTTTCGTTTATGACCAGAGGTCACTaGTCTCCAGGGGCTGGCGGT +
Preference number: 4 (lower is better)
Translates to: PNGDRRLSILLPFSLVSFMTRGH*SPGAGG
Trigger: ACCGCCAGCCCCTGGAGAGCAGTGACCTCTGGTCAT...AAACGAAACCAAACTAAAAGGAAGCAAAATACTTAGGCGTCTGTCACCATTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp GTCACTCTGGTGAATGAAGCGCTCCTGCTCCTCAAAAGCACGGATGACACTGACGGAAGATTTTCTAGCTaGATTGGTGATCAAAAGAGC +
Preference number: 4 (lower is better)
Translates to: VTLVNEALLLLKSTDDTDGRFSS*IGDQKS
Trigger: GCTCTTTTGATCACCAATGCAGCTAGAAAATCTTCC...GTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCATTCACCAGAGTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp AGAGGCCGGAAACTCAAGTTACAGATAGTTCTGAGCTGTCCAATATGGGTGCAAACCTTGAGCTCCTCCTaGCTGATGCTCATGACTTTG +
Preference number: 4 (lower is better)
Translates to: RGRKLKLQIVLSCPIWVQTLSSS*LMLMTL
Trigger: CAAAGTCATGAGCATCAGGCAGGAGGAGCTCAAGGT...TTGCACCCATATTGGACAGCTCAGAACTATCTGTAACTTGAGTTTCCGGCCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp GTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGATGATCTCCCCTTCTaGAGACTCATTGATCCGGAA +
Preference number: 4 (lower is better)
Translates to: VHLSSSFFKVRSRMKPNGDDLPF*RLIDPE
Trigger: TTCCGGATCAATGAGTCTGCAGAAGGGGAGATCATC...ACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp TGGCCCTTTGGAGCTAGAGATATAGGCAACTGTAAGACACTGAACACAGGTGCTAAAGGAAAGAGGCACTaGATTCTGGGCATGGATTCC +
Preference number: 4 (lower is better)
Translates to: WPFGARDIGNCKTLNTGAKGKRH*ILGMDS
Trigger: GGAATCCATGCCCAGAATCCAGTGCCTCTTTCCTTT...AGCACCTGTGTTCAGTGTCTTACAGTTGCCTATATCTCTAGCTCCAAAGGGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp GTTCTTGCTAACCATGGGGGTCTCTCTTTGGTCTGTAACTCACACAACCTAGAGCCTTCTGCACACTCATaGTTCAGCTTGTCAGGCAAA +
Preference number: 4 (lower is better)
Translates to: VLANHGGLSLVCNSHNLEPSAHS*FSLSGK
Trigger: TTTGCCTGACAAGCTGAACCATGAGTGTGCAGAAGG...CTCTAGGTTGTGTGAGTTACAGACCAAAGAGAGACCCCCATGGTTAGCAAGAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp ATGAGCAATCGTGAGCACAGTACAGTCTTCAAACTGTGTCCGGATGGTGGACTGAGGTACCACTTCTTCTaGTGTGTCCTCCTTATTCAA +
Preference number: 4 (lower is better)
Translates to: MSNREHSTVFKLCPDGGLRYHFF*CVLLIQ
Trigger: TTGAATAAGGAGGACACATCAGAAGAAGTGGTACCT...CAGTCCACCATCCGGACACAGTTTGAAGACTGTACTGTGCTCACGATTGCTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp AAGAAACTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCGATCTCGTTCATCAGCTTaGTTCGGTTGTCTTTGCTCT +
Preference number: 4 (lower is better)
Translates to: KKLMGDRRTLYSRSRCKRSRSSA*FGCLCS
Trigger: AGAGCAAAGACAACCGAATCAAGCTGATGAACGAGA...TCGCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp TTTGGAGCTAGAGATATAGGCAACTGTAAGACACTGAACACAGGTGCTGGGAACGCTGACAAACAGCAGTaGTGTGTAAAAGTAGCCCTG +
Preference number: 4 (lower is better)
Translates to: FGARDIGNCKTLNTGAGNADKQQ*CVKVAL
Trigger: CAGGGCTACTTTTACACAGCACTGCTGTTTGTCAGC...GTTCCCAGCACCTGTGTTCAGTGTCTTACAGTTGCCTATATCTCTAGCTCCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp AGGGTCCAAGTTCATGCGGAGGGAACCCGAGAACAAAACAGGATCCTGTGGAATGGAAGATTTTCTAGCTaGATTGGTGATCAAAAGAGC +
Preference number: 4 (lower is better)
Translates to: RVQVHAEGTREQNRILWNGRFSS*IGDQKS
Trigger: GCTCTTTTGATCACCAATGCAGCTAGAAAATCTTCC...ATTCCACAGGATCCTGTTTTGTTCTCGGGTTCCCTCCGCATGAACTTGGACCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp TTTGGAGCTAGAGATATAGGCAACTGTAAGACACTGAACACAGGTGCTGGGAACCAGCATCCTTGGCCATaGTGTAGAAGATGCCTCTTT +
Preference number: 4 (lower is better)
Translates to: FGARDIGNCKTLNTGAGNQHPWP*CRRCLF
Trigger: AAAGAGGCATCTTCTACAGCATGGCCAAGGATGCTG...GTTCCCAGCACCTGTGTTCAGTGTCTTACAGTTGCCTATATCTCTAGCTCCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp AATCGTGAGCACAGTACAGTCTTCAAACTGTGTCCGGATGGTGGACTGGATAAGAGGTCTTGGTCTTCATaGCCATCACAGCATTTAAGG +
Preference number: 4 (lower is better)
Translates to: NREHSTVFKLCPDGGLDKRSWSS*PSQHLR
Trigger: CCTTAAATGCTGTGATGGCCATGAAGACCAAGACCT...CTTATCCAGTCCACCATCCGGACACAGTTTGAAGACTGTACTGTGCTCACGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CCA 90 bp AAGAAACTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCGAAGGTCTTGGTCTTCATaGCCATCACAGCATTTAAGG +
Preference number: 4 (lower is better)
Translates to: KKLMGDRRTLYSRSRCKRRSWSS*PSQHLR
Trigger: CCTTAAATGCTGTGATGGCCATGAAGACCAAGACCT...TCGCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CAA 72 bp TGGCATCAAGTTCTTGCTAACCATGGGGGTCTCTCTTaGGTCTGTAACTCACACAACCTAGAGGACCACTTT +
Preference number: 4 (lower is better)
Translates to: WHQVLANHGGLS*VCNSHNLEDHF
Trigger: AAAGTGGTCCTCTAGGTTGTGTGAGTTACAGACCAAAGAGAGACCCCCATGGTTAGCAAGAACTTGATGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp GTTCTTGCTAACCATGGGGGTCTCTCTTTGGTCTGTAACTCACACAACCTAGAGCAGTTTTGGTTTTGTTaGGGTGTGTCATCTGGATGT +
Preference number: 4 (lower is better)
Translates to: VLANHGGLSLVCNSHNLEQFWFC*GVSSGC
Trigger: ACATCCAGATGACACACCTCAACAAAACCAAAACTG...CTCTAGGTTGTGTGAGTTACAGACCAAAGAGAGACCCCCATGGTTAGCAAGAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp TTCTCTGGGACTGACATTAGAGCCAAAATTCAAAGCAAGTATGAACTGTGGCTGGGTCTGCCCAGCAGATaGTCCACAGAAAGAATCCTA +
Preference number: 4 (lower is better)
Translates to: FSGTDIRAKIQSKYELWLGLPSR*STERIL
Trigger: TAGGATTCTTTCTGTGGATCATCTGCTGGGCAGACC...CAGCCACAGTTCATACTTGCTTTGAATTTTGGCTCTAATGTCAGTCCCAGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp CAAAGAAACTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCAGGTACCACTTCTTCTaGTGTGTCCTCCTTATTCAA +
Preference number: 4 (lower is better)
Translates to: QRNSWVIAEHCIAGPGASRYHFF*CVLLIQ
Trigger: TTGAATAAGGAGGACACATCAGAAGAAGTGGTACCT...GCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp CAAAGAAACTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCTACAGGCTGCTTCCTTaGCTTATCACATTCCTTCTT +
Preference number: 4 (lower is better)
Translates to: QRNSWVIAEHCIAGPGASYRLLP*LITFLL
Trigger: AAGAAGGAATGTGATAAGTCAAGGAAGCAGCCTGTA...GCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp GGGACTGACATTAGAGCCAAAATTCAAAGCAAGTATGAACTGTGGCTGGCATCAATAAGAACCCATCTCTaGGATCTTGCCGCCACTCAT +
Preference number: 4 (lower is better)
Translates to: GTDIRAKIQSKYELWLASIRTHL*DLAATH
Trigger: ATGAGTGGCGGCAAGATCTCAGAGATGGGTTCTTAT...TGATGCCAGCCACAGTTCATACTTGCTTTGAATTTTGGCTCTAATGTCAGTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp AAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTTTGCTTAACATCTTGATGACCTaGGGGATCATGGAGTCCACT +
Preference number: 4 (lower is better)
Translates to: KVRSRMKPNGDRRLSILLNILMT*GIMEST
Trigger: AGTGGACTCCATGATCCCGCAGGTCATCAAGATGTT...AAGCAAAATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp AAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTTTGCTTAAAGGAAAGAGGCACTaGATTCTGGGCATGGATTCC +
Preference number: 4 (lower is better)
Translates to: KVRSRMKPNGDRRLSILLKGKRH*ILGMDS
Trigger: GGAATCCATGCCCAGAATCCAGTGCCTCTTTCCTTT...AAGCAAAATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
3UTR CAA 72 bp TTACCAAGAAGTATTTGGGACACTTGTGACACAGCTTaGTCCAGGGTCACATGTCCAAAAACCGACAGTAGG +
Preference number: 4 (lower is better)
Translates to: LPRSIWDTCDTA*SRVTCPKTDSR
Trigger: CCTACTGTCGGTTTTTGGACATGTGACCCTGGACAAAGCTGTGTCACAAGTGTCCCAAATACTTCTTGGTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
3UTR CAA 72 bp ACCTTTTCTCCACCCTCAATGGTGACATTTATGTGCTaGAGAACCAAGTCCAAGTCTTCTCGATACCTCAGG +
Preference number: 4 (lower is better)
Translates to: TFSPPSMVTFMC*RTKSKSSRYLR
Trigger: CCTGAGGTATCGAGAAGACTTGGACTTGGTTCTCAAGCACATAAATGTCACCATTGAGGGTGGAGAAAAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR TCA 90 bp CAGCCCCACTTATTACCAAGAAGTATTTGGGACACTTGTGACACAGCTTTGTCCTACAGGCTGCTTCCTTaGCTTATCACATTCCTTCTT +
Preference number: 4 (lower is better)
Translates to: QPHLLPRSIWDTCDTALSYRLLP*LITFLL
Trigger: AAGAAGGAATGTGATAAGTCAAGGAAGCAGCCTGTA...GGACAAAGCTGTGTCACAAGTGTCCCAAATACTTCTTGGTAATAAGTGGGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp CCAAATGGTGACAGACGCCTAAGTATTTTGCTTCCTTTTAGTTTGGTTTCGTTTAGATGCCTCTGCAGGTaGTTTCCTACGGTGTCTGTC +
Preference number: 4 (lower is better)
Translates to: PNGDRRLSILLPFSLVSFRCLCR*FPTVSV
Trigger: GACAGACACCGTAGGAAAGCACCTGCAGAGGCATCT...AAACGAAACCAAACTAAAAGGAAGCAAAATACTTAGGCGTCTGTCACCATTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp TTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTGCTCAAAGAAACTCATaGGTGATCGCAGAACATTGT +
Preference number: 4 (lower is better)
Translates to: FFKVRSRMKPNGDRRLSIAQRNS*VIAEHC
Trigger: ACAATGTTCTGCGATCACCCATGAGTTTCTTTGAGC...AATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR TCA 90 bp CCAAATGGTGACAGACGCCTAAGTATTTTGCTTCCTTTTAGTTTGGTTTCGTTTAACATCATCAGGTCATaGAGGGCCTTGTACAGGAAG +
Preference number: 4 (lower is better)
Translates to: PNGDRRLSILLPFSLVSFNIIRS*RALYRK
Trigger: CTTCCTGTACAAGGCCCTTCATGACCTGATGATGTT...AAACGAAACCAAACTAAAAGGAAGCAAAATACTTAGGCGTCTGTCACCATTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp TTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTGGAAGATTTTCTAGCTaGATTGGTGATCAAAAGAGC +
Preference number: 4 (lower is better)
Translates to: FFKVRSRMKPNGDRRLSIGRFSS*IGDQKS
Trigger: GCTCTTTTGATCACCAATGCAGCTAGAAAATCTTCC...AATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR GCA 90 bp CCAAATGGTGACAGACGCCTAAGTATTTTGCTTCCTTTTAGTTTGGTTTCGTTTCTTCAGTCTCTCCACTaGCACAATGTTGGTCTCCAT +
Preference number: 4 (lower is better)
Translates to: PNGDRRLSILLPFSLVSFLQSLH*HNVGLH
Trigger: ATGGAGACCAACATTGTGGCAGTGGAGAGACTGAAG...AAACGAAACCAAACTAAAAGGAAGCAAAATACTTAGGCGTCTGTCACCATTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR GCA 90 bp TTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTATGGTGACATTTATGTaGTTGAGAACCAAGTCCAAG +
Preference number: 4 (lower is better)
Translates to: FFKVRSRMKPNGDRRLSIMVTFM*LRTKSK
Trigger: CTTGGACTTGGTTCTCAAGCACATAAATGTCACCAT...AATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CCA 90 bp AAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTTTGCTTCAAAACAGGATCCTGTaGAATGATGGTGATCTTGAA +
Preference number: 4 (lower is better)
Translates to: KVRSRMKPNGDRRLSILLQNRIL*NDGDLE
Trigger: TTCAAGATCACCATCATTCCACAGGATCCTGTTTTG...AAGCAAAATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS GCA 90 bp CACTGTCATCCTCCGAGGCCAGGTCCTGCTCAGCGTTGGCATAGGTaGGCAGGAACTCAGCGAAGGCCCCATCCCGGTCTAGCAGCTCCT +
Preference number: 5 (lower is better)
Translates to: HCHPPRPGPAQRWHR*AGTQRRPHPGLAAP
Trigger: AGGAGCTGCTAGACCGGGATGGGGCCTTCGCTGAGTTCCTGCGCACCTATGCCAACGCTGAGCAGGACCTGGCCTCGGAGGATGACAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp GGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGACTGTGTCCAGCTCCTaGGAGAATCGGTTCACTAGG +
Preference number: 5 (lower is better)
Translates to: GLLAHAWTLGSWPCSPHWTVSSS*ENRFTR
Trigger: CCTAGTGAACCGATTCTCCAAGGAGCTGGACACAGT...CCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp GGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGGGAATGATGGTGATCTaGAAGCGCAGGTTGTGCAGG +
Preference number: 5 (lower is better)
Translates to: GLLAHAWTLGSWPCSPHWGMMVI*KRRLCR
Trigger: CCTGCACAACCTGCGCTTCAAGATCACCATCATTCC...CCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS TCA 90 bp CCAGCATCCCATTTTCCACCGGCTTTGACTCCTTCCCTGAACCACTaGCACTGTCATCCTCCGAGGCCAGGTCCTGCTCAGCGTTGGCAT +
Preference number: 5 (lower is better)
Translates to: PASHFPPALTPSLNH*HCHPPRPGPAQRWH
Trigger: ATGCCAACGCTGAGCAGGACCTGGCCTCGGAGGATGACAGTGTCAGTGGTTCAGGGAAGGAGTCAAAGCCGGTGGAAAATGGGATGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS GCA 90 bp CTGGTGGAGTGCCAGTGTCTGCAGACAGGCGCTGACAAACAGCAGTaGTGTGTAAAAGTAGCCCTGCCAGTCGGGAGCCTCCCTGTCATT +
Preference number: 5 (lower is better)
Translates to: LVECQCLQTGADKQQ*CVKVALPVGSLPVI
Trigger: AATGACAGGGAGGCTCCCGACTGGCAGGGCTACTTTTACACAGCACTGCTGTTTGTCAGCGCCTGTCTGCAGACACTGGCACTCCACCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp TATAGCAGGTCCAGGTGCAAGCGACGGGAGGCAAAGATGCCCCCGATGGACACAGGCTTGCTGGGATCTTaGGGAGGGGCATACACAATC +
Preference number: 5 (lower is better)
Translates to: YSRSRCKRREAKMPPMDTGLLGS*GGAYTI
Trigger: GATTGTGTATGCCCCTCCCAAAGATCCCAGCAAGCC...TGTGTCCATCGGGGGCATCTTTGCCTCCCGTCGCTTGCACCTGGACCTGCTATA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp TCCAGGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCAGAACCCATGAACATCTaGATGACCTGCGGGATCATG +
Preference number: 5 (lower is better)
Translates to: SRVAGSCLDSGILALQSSEPMNI*MTCGIM
Trigger: CATGATCCCGCAGGTCATCAAGATGTTCATGGGTTC...TGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp GGAAGCGTAGGTTTCCAGGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTTCTGCAGACTCATaGATCCGGAACAAACCCAGG +
Preference number: 5 (lower is better)
Translates to: GSVGFQGCWLMPGLWDPGPSADS*IRNKPR
Trigger: CCTGGGTTTGTTCCGGATCAATGAGTCTGCAGAAGG...GCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCTGGAAACCTACGCTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp GGAATGATGGTGATCTTGAAGCGCAGGTTGTGCAGGCCGATCTTGGCGATGTTGCCCACCACAGCAGTCTaGATGCGCATGCCACTGACG +
Preference number: 5 (lower is better)
Translates to: GMMVILKRRLCRPILAMLPTTAV*MRMPLT
Trigger: CGTCAGTGGCATGCGCATCAAGACTGCTGTGGTGGG...CAACATCGCCAAGATCGGCCTGCACAACCTGCGCTTCAAGATCACCATCATTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGAGGACTTTGATCCCATaGAGGATCTCGTTCATCAGC +
Preference number: 5 (lower is better)
Translates to: GLLAHAWTLGSWPCSPHWRTLIP*RISFIS
Trigger: GCTGATGAACGAGATCCTCAATGGGATCAAAGTCCT...CCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp TCCAGGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATACAGCTTGAGGACTTaGATCCCATTGAGGATCTCG +
Preference number: 5 (lower is better)
Translates to: SRVAGSCLDSGILALQSSYSLRT*IPLRIS
Trigger: CGAGATCCTCAATGGGATCAAAGTCCTCAAGCTGTA...TGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp TATAGCAGGTCCAGGTGCAAGCGACGGGAGGCAAAGATGCCCCCGATGGACACAGGGAAGCGCAAGATATaGAACAGGGCTAGGGACACA +
Preference number: 5 (lower is better)
Translates to: YSRSRCKRREAKMPPMDTGKRKI*NRARDT
Trigger: TGTGTCCCTAGCCCTGTTCAATATCTTGCGCTTCCC...TGTGTCCATCGGGGGCATCTTTGCCTCCCGTCGCTTGCACCTGGACCTGCTATA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS TCA 90 bp CCCACCACAGCAGTCTTGATGCGCATGCCACTGACGAAGCAGATATaGAAGTACTGGTGGAGTGCCAGTGTCTGCAGACAGGCGCTGACA +
Preference number: 5 (lower is better)
Translates to: PTTAVLMRMPLTKQI*KYWWSASVCRQALT
Trigger: TGTCAGCGCCTGTCTGCAGACACTGGCACTCCACCAGTACTTTCATATCTGCTTCGTCAGTGGCATGCGCATCAAGACTGCTGTGGTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGGCAGTTTTGGTTTTGTaGAGGTGTGTCATCTGGATG +
Preference number: 5 (lower is better)
Translates to: GLLAHAWTLGSWPCSPHWAVLVL*RCVIWM
Trigger: CATCCAGATGACACACCTCAACAAAACCAAAACTGC...CCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GCTGAGATGCCTCTGCAGGTGCTTTCCTACGGTGTCTGTCACCAGCATCCCATTGGCTTGCTGGGATCTTaGGGAGGGGCATACACAATC +
Preference number: 5 (lower is better)
Translates to: AEMPLQVLSYGVCHQHPIGLLGS*GGAYTI
Trigger: GATTGTGTATGCCCCTCCCAAAGATCCCAGCAAGCC...AATGGGATGCTGGTGACAGACACCGTAGGAAAGCACCTGCAGAGGCATCTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GGCGATGTTGACCCCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGCCCACCACAGCAGTCTaGATGCGCATGCCACTGACG +
Preference number: 5 (lower is better)
Translates to: GDVDPINDDLPFCRLIDPPTTAV*MRMPLT
Trigger: CGTCAGTGGCATGCGCATCAAGACTGCTGTGGTGGG...CGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAACATCGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATCTCGTTCATCAGCTaGATTCGGTTGTCTTTGCTC +
Preference number: 5 (lower is better)
Translates to: GLLAHAWTLGSWPCSPHWISFIS*IRLSLL
Trigger: GAGCAAAGACAACCGAATCAAGCTGATGAACGAGAT...CCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp CAGGTCCTGCTCAGCGTTGGCATAGGTGCGCAGGAACTCAGCGAAGGCCCCATCATCTCGTTCATCAGCTaGATTCGGTTGTCTTTGCTC +
Preference number: 5 (lower is better)
Translates to: QVLLSVGIGAQELSEGPIISFIS*IRLSLL
Trigger: GAGCAAAGACAACCGAATCAAGCTGATGAACGAGAT...GATGGGGCCTTCGCTGAGTTCCTGCGCACCTATGCCAACGCTGAGCAGGACCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GTCGCTGCCCCACACTCAGGTTCTCTCCACCTTCTGCACACTCATGGTTCAGCTCAAAGACAGCAAAGGTaGACAGGGCCACCAGGAAAG +
Preference number: 5 (lower is better)
Translates to: VAAPHSGSLHLLHTHGSAQRQQR*TGPPGK
Trigger: CTTTCCTGGTGGCCCTGTCAACCTTTGCTGTCTTTG...AGCTGAACCATGAGTGTGCAGAAGGTGGAGAGAACCTGAGTGTGGGGCAGCGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAACATGTCCCTCCACCTaGTCCATCTCAGCCAGCAGG +
Preference number: 5 (lower is better)
Translates to: PEARRVSEVGCICLPASSTCPST*SISASR
Trigger: CCTGCTGGCTGAGATGGACAAGGTGGAGGGACATGT...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS TCA 90 bp GGTAGGTCTTGGTCTTCATGGCCATCACAGCATTTAAGGGTACCATaGGAATCATCACAGCCACTCCAGCCAGCACAGAAGGGCCCAGGC +
Preference number: 5 (lower is better)
Translates to: GRSWSSWPSQHLRVP*ESSQPLQPAQKGPG
Trigger: GCCTGGGCCCTTCTGTGCTGGCTGGAGTGGCTGTGATGATTCTCATGGTACCCTTAAATGCTGTGATGGCCATGAAGACCAAGACCTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS CCA 90 bp TTCCCTTCGCCCACCACTCTTGATCGACCTCCGCTCAATGCTGTCTaGCTCCAGCTCCTCATGAGACAGAAAAATCCTGAGACGCTTGAG +
Preference number: 5 (lower is better)
Translates to: FPSPTTLDRPPLNAV*LQLLMRQKNPETLE
Trigger: CTCAAGCGTCTCAGGATTTTTCTGTCTCATGAGGAGCTGGAGCCAGACAGCATTGAGCGGAGGTCGATCAAGAGTGGTGGGCGAAGGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp ACACAGCCATGGAGTAGCCAAATATTGCTGCACCTTGCAAGATGCCCAAGGCCCGGCTTGCTGGGATCTTaGGGAGGGGCATACACAATC +
Preference number: 5 (lower is better)
Translates to: TQPWSSQILLHLARCPRPGLLGS*GGAYTI
Trigger: GATTGTGTATGCCCCTCCCAAAGATCCCAGCAAGCC...GGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS TCA 90 bp AGATATGAAAGTACTGGTGGAGTGCCAGTGTCTGCAGACAGGCGCTaGCAAACAGCAGTGCTGTGTAAAAGTAGCCCTGCCAGTCGGGAG +
Preference number: 5 (lower is better)
Translates to: RYESTGGVPVSADRR*QTAVLCKSSPASRE
Trigger: CTCCCGACTGGCAGGGCTACTTTTACACAGCACTGCTGTTTGTCAGCGCCTGTCTGCAGACACTGGCACTCCACCAGTACTTTCATATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS GCA 90 bp GATGCGCATGCCACTGACGAAGCAGATATGAAAGTACTGGTGGAGTaGCAGTGTCTGCAGACAGGCGCTGACAAACAGCAGTGCTGTGTA +
Preference number: 5 (lower is better)
Translates to: DAHATDEADMKVLVE*QCLQTGADKQQCCV
Trigger: TACACAGCACTGCTGTTTGTCAGCGCCTGTCTGCAGACACTGGCACTCCACCAGTACTTTCATATCTGCTTCGTCAGTGGCATGCGCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS CCA 90 bp CTGGAAAGGAAAGAGGCACTGGATTCTGGGCATGGATTCCGGTCATaGACAGTTTCAGAGAACAGGGGTGAGCAGTCTGAGAAGCAGGAC +
Preference number: 5 (lower is better)
Translates to: LERKEALDSGHGFRS*TVSENRGEQSEKQD
Trigger: GTCCTGCTTCTCAGACTGCTCACCCCTGTTCTCTGAAACTGTCCATGACCGGAATCCATGCCCAGAATCCAGTGCCTCTTTCCTTTCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS CCA 90 bp GGTGACTTGACAATCAGTGCCTCCACCTCCTCATTCACATCCAACTaGGAACTTCCCTTAGGCTTGCTGGGATCTTTGGGAGGGGCATAC +
Preference number: 5 (lower is better)
Translates to: GDLTISASTSSFTSN*ELPLGLLGSLGGAY
Trigger: GTATGCCCCTCCCAAAGATCCCAGCAAGCCTAAGGGAAGTTCCCAGTTGGATGTGAATGAGGAGGTGGAGGCACTGATTGTCAAGTCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS CCA 90 bp GCTATTCCCTTCGCCACTCTTGATCGACCTCCGCTCAATGCTGTCTaGCTCCAGCTCCTCATGAGACAGAAAAATCCTGAGACGCTTGAG +
Preference number: 5 (lower is better)
Translates to: AIPFATLDRPPLNAV*LQLLMRQKNPETLE
Trigger: CTCAAGCGTCTCAGGATTTTTCTGTCTCATGAGGAGCTGGAGCCAGACAGCATTGAGCGGAGGTCGATCAAGAGTGGCGAAGGGAATAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp GTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATGCAGTTTTGGTTTTGTaGAGGTGTGTCATCTGGATG +
Preference number: 5 (lower is better)
Translates to: VAGSCLDSGILALQSSLDAVLVL*RCVIWM
Trigger: CATCCAGATGACACACCTCAACAAAACCAAAACTGC...ATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp AAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCGGCTTGCTGGGATCTTaGGGAGGGGCATACACAATC +
Preference number: 5 (lower is better)
Translates to: KWGASVFQLLQGQIQDEAGLLGS*GGAYTI
Trigger: GATTGTGTATGCCCCTCCCAAAGATCCCAGCAAGCC...GGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCACCCCACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp TGGCCCTTTGGAGCTAGAGATATAGGCAACTGTAAGACACTGAACACAGGTGCTCCCACCACAGCAGTCTaGATGCGCATGCCACTGACG +
Preference number: 5 (lower is better)
Translates to: WPFGARDIGNCKTLNTGAPTTAV*MRMPLT
Trigger: CGTCAGTGGCATGCGCATCAAGACTGCTGTGGTGGG...AGCACCTGTGTTCAGTGTCTTACAGTTGCCTATATCTCTAGCTCCAAAGGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp AATCGTGAGCACAGTACAGTCTTCAAACTGTGTCCGGATGGTGGACTGGATAAGCCCACCACAGCAGTCTaGATGCGCATGCCACTGACG +
Preference number: 5 (lower is better)
Translates to: NREHSTVFKLCPDGGLDKPTTAV*MRMPLT
Trigger: CGTCAGTGGCATGCGCATCAAGACTGCTGTGGTGGG...CTTATCCAGTCCACCATCCGGACACAGTTTGAAGACTGTACTGTGCTCACGATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GATACCAGATTCTTGCCCGTGGGCACCATCCCTTCTGCTCTTGACTTTTGCTGCCAAAGACAGCAAAGGTaGACAGGGCCACCAGGAAAG +
Preference number: 5 (lower is better)
Translates to: DTRFLPVGTIPSALDFCCQRQQR*TGPPGK
Trigger: CTTTCCTGGTGGCCCTGTCAACCTTTGCTGTCTTTG...GCAGCAAAAGTCAAGAGCAGAAGGGATGGTGCCCACGGGCAAGAATCTGGTATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp CTGCACCTTGCAAGATGCCCAAGGCCCCATAGACACTCAGCCGAAAATTCCTGTCAAAGACAGCAAAGGTaGACAGGGCCACCAGGAAAG +
Preference number: 5 (lower is better)
Translates to: LHLARCPRPHRHSAENSCQRQQR*TGPPGK
Trigger: CTTTCCTGGTGGCCCTGTCAACCTTTGCTGTCTTTG...ACAGGAATTTTCGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp TGCCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTGGGAAGCGCAAGATATaGAACAGGGCTAGGGACACA +
Preference number: 5 (lower is better)
Translates to: CQRPDVYLKWGASVFQLLGKRKI*NRARDT
Trigger: TGTGTCCCTAGCCCTGTTCAATATCTTGCGCTTCCC...AAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAAAATATTGCTGCACCTaGCAAGATGCCCAAGGCCCC +
Preference number: 5 (lower is better)
Translates to: PEARRVSEVGCICLPASSKYCCT*QDAQGP
Trigger: GGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTT...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS GCA 90 bp GATGCCATTCAGTGTGGGAGGTTCACCCCTGGCCCAAGTGAAGGTTaGATTCTTCACAGTGATGCTATTCCCTTCGCCACTCTTGATCGA +
Preference number: 5 (lower is better)
Translates to: DAIQCGRFTPGPSEG*ILHSDAIPFATLDR
Trigger: TCGATCAAGAGTGGCGAAGGGAATAGCATCACTGTGAAGAATGCAACCTTCACTTGGGCCAGGGGTGAACCTCCCACACTGAATGGCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp CCAGAGGCCAGACGTGTATCTGAAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAGTCTTGTATAACACCTaGAACAGAGAGGGCTCCCGA +
Preference number: 5 (lower is better)
Translates to: PEARRVSEVGCICLPASSVLYNT*NREGSR
Trigger: TCGGGAGCCCTCTCTGTTCAAGGTGTTATACAAGAC...TGAAGAAGCTGGAAGACAGATGCACCCCACTTCAGATACACGTCTGGCCTCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GTCACTCTGGTGAATGAAGCGCTCCTGCTCCTCAAAAGCACGGATGACACTGACGTCTTGTATAACACCTaGAACAGAGAGGGCTCCCGA +
Preference number: 5 (lower is better)
Translates to: VTLVNEALLLLKSTDDTDVLYNT*NREGSR
Trigger: TCGGGAGCCCTCTCTGTTCAAGGTGTTATACAAGAC...GTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCATTCACCAGAGTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp AGGAGCTCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCTTGATTCGGTTGTCTTaGCTCTTCATGTGTGCCACC +
Preference number: 5 (lower is better)
Translates to: RSSEGAPHSRTSPLSRTILIRLS*LFMCAT
Trigger: GGTGGCACACATGAAGAGCAAAGACAACCGAATCAA...GATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGAGCTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GTCGCTGCCCCACACTCAGGTTCTCTCCACCTTCTGCACACTCATGGTTCAGCTATCTCGTTCATCAGCTaGATTCGGTTGTCTTTGCTC +
Preference number: 5 (lower is better)
Translates to: VAAPHSGSLHLLHTHGSAISFIS*IRLSLL
Trigger: GAGCAAAGACAACCGAATCAAGCTGATGAACGAGAT...AGCTGAACCATGAGTGTGCAGAAGGTGGAGAGAACCTGAGTGTGGGGCAGCGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GGTATCCCCACTCTGCAGGTGCTTTCCTACGGTGTCTGTCACCAGCATCCCATTAGGACTTTGATCCCATaGAGGATCTCGTTCATCAGC +
Preference number: 5 (lower is better)
Translates to: GIPTLQVLSYGVCHQHPIRTLIP*RISFIS
Trigger: GCTGATGAACGAGATCCTCAATGGGATCAAAGTCCT...AATGGGATGCTGGTGACAGACACCGTAGGAAAGCACCTGCAGAGTGGGGATACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130671.8
CDS-3UTR CAA 90 bp GCGGCAATGGGCGTGGCCAGTAGGATGATGATGACAGCTCCAATGACACTGAAGTACAGCTTGAGGACTTaGATCCCATTGAGGATCTCG +
Preference number: 5 (lower is better)
Translates to: AAMGVASRMMMTAPMTLKYSLRT*IPLRIS
Trigger: CGAGATCCTCAATGGGATCAAAGTCCTCAAGCTGTA...CTTCAGTGTCATTGGAGCTGTCATCATCATCCTACTGGCCACGCCCATTGCCGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp CGGATGACACTGACTCCCAGCAAGGTCTCATTGAAGTGTGAGTACACAGGGGAACAAAGACAGCAAAGGTaGACAGGGCCACCAGGAAAG +
Preference number: 5 (lower is better)
Translates to: RMTLTPSKVSLKCEYTGEQRQQR*TGPPGK
Trigger: CTTTCCTGGTGGCCCTGTCAACCTTTGCTGTCTTTG...TTCCCCTGTGTACTCACACTTCAATGAGACCTTGCTGGGAGTCAGTGTCATCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp TCCAGGGTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCAACACAAAGGCTTTCTTaGCATCTAGGATATTTCTCT +
Preference number: 5 (lower is better)
Translates to: SRVAGSCLDSGILALQSSTQRLS*HLGYFS
Trigger: AGAGAAATATCCTAGATGCAAAGAAAGCCTTTGTGT...TGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAACCCTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GCTGAGATGCCTCTGCAGGTGCTTTCCTACGGTGTCTGTCACCAGCATCCCATTGCAGTTTTGGTTTTGTaGAGGTGTGTCATCTGGATG +
Preference number: 5 (lower is better)
Translates to: AEMPLQVLSYGVCHQHPIAVLVL*RCVIWM
Trigger: CATCCAGATGACACACCTCAACAAAACCAAAACTGC...AATGGGATGCTGGTGACAGACACCGTAGGAAAGCACCTGCAGAGGCATCTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp AAAGAAGTAAACCAGACCCAAGGGTGGGATGATGACTGCGGCAATGGGCGTGGCGCAGTTTTGGTTTTGTaGAGGTGTGTCATCTGGATG +
Preference number: 5 (lower is better)
Translates to: KEVNQTQGWDDDCGNGRGAVLVL*RCVIWM
Trigger: CATCCAGATGACACACCTCAACAAAACCAAAACTGC...GCCACGCCCATTGCCGCAGTCATCATCCCACCCTTGGGTCTGGTTTACTTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GAGCTCAGAGGGTGCACCACACTCCCGAACTTCTCCTTTGTCCAGGACAATCACGTACAGGCTGCTTCCTaGACTTATCACATTCCTTCT +
Preference number: 5 (lower is better)
Translates to: ELRGCTTLPNFSFVQDNHVQAAS*TYHIPS
Trigger: AGAAGGAATGTGATAAGTCAAGGAAGCAGCCTGTAC...GTGATTGTCCTGGACAAAGGAGAAGTTCGGGAGTGTGGTGCACCCTCTGAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp AAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCGTCTTGTATAACACCTaGAACAGAGAGGGCTCCCGA +
Preference number: 5 (lower is better)
Translates to: KWGASVFQLLQGQIQDEAVLYNT*NREGSR
Trigger: TCGGGAGCCCTCTCTGTTCAAGGTGTTATACAAGAC...GGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCACCCCACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp ACACTGACTCCCAGCAAGGTCTCATTGAAGTGTGAGTACACAGGGGAACGGCTGAGGACTTTGATCCCATaGAGGATCTCGTTCATCAGC +
Preference number: 5 (lower is better)
Translates to: TLTPSKVSLKCEYTGERLRTLIP*RISFIS
Trigger: GCTGATGAACGAGATCCTCAATGGGATCAAAGTCCT...CAGCCGTTCCCCTGTGTACTCACACTTCAATGAGACCTTGCTGGGAGTCAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp CAGCCCCACTTATTACCAAGAAGTATTTGGGACACTTGTGACACAGCTTTGTCCCTGTGGGAAGACGAGTaGCTGAGATGCCTCTGCAGG +
Preference number: 5 (lower is better)
Translates to: QPHLLPRSIWDTCDTALSLWEDE*LRCLCR
Trigger: CCTGCAGAGGCATCTCAGCAACTCGTCTTCCCACAG...GGACAAAGCTGTGTCACAAGTGTCCCAAATACTTCTTGGTAATAAGTGGGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp GTCTTTGATACCAGATTCTTGCCCGTGGGCACCATCCCTTCTGCTCTTGACTTTGGCGCTTCAGTTGTCTaGAGGAAGCCACATAGAACC +
Preference number: 5 (lower is better)
Translates to: VFDTRFLPVGTIPSALDFGASVV*RKPHRT
Trigger: GGTTCTATGTGGCTTCCTCAAGACAACTGAAGCGCC...AAAGTCAAGAGCAGAAGGGATGGTGCCCACGGGCAAGAATCTGGTATCAAAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp TGGCCCTTTGGAGCTAGAGATATAGGCAACTGTAAGACACTGAACACAGGTGCTTTGTGCAGGCCGATCTaGGCGATGTTGACCCCATCA +
Preference number: 5 (lower is better)
Translates to: WPFGARDIGNCKTLNTGALCRPI*AMLTPS
Trigger: TGATGGGGTCAACATCGCCAAGATCGGCCTGCACAA...AGCACCTGTGTTCAGTGTCTTACAGTTGCCTATATCTCTAGCTCCAAAGGGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp AGAGGCCGGAAACTCAAGTTACAGATAGTTCTGAGCTGTCCAATATGGGTGCAAATCTTGAAGCGCAGGTaGTGCAGGCCGATCTTGGCG +
Preference number: 5 (lower is better)
Translates to: RGRKLKLQIVLSCPIWVQILKRR*CRPILA
Trigger: CGCCAAGATCGGCCTGCACAACCTGCGCTTCAAGAT...TTGCACCCATATTGGACAGCTCAGAACTATCTGTAACTTGAGTTTCCGGCCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp GTTCTTGCTAACCATGGGGGTCTCTCTTTGGTCTGTAACTCACACAACCTAGAGGTAGAAGATGCCTCTTaGCTGCAGGAGCTCAGAGGG +
Preference number: 5 (lower is better)
Translates to: VLANHGGLSLVCNSHNLEVEDAS*LQELRG
Trigger: CCCTCTGAGCTCCTGCAGCAAAGAGGCATCTTCTAC...CTCTAGGTTGTGTGAGTTACAGACCAAAGAGAGACCCCCATGGTTAGCAAGAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS TCA 90 bp AGCAGTCTGAGAAGCAGGACAGCACGAGCTGAACAAGCACAAGGGTaGAGTACAGATAGAACGTGGAATCTCGAAACACGTCCACATGAG +
Preference number: 5 (lower is better)
Translates to: SSLRSRTARAEQAQG*STDRTWNLETRPHE
Trigger: CTCATGTGGACGTGTTTCGAGATTCCACGTTCTATCTGTACTTCACCCTTGTGCTTGTTCAGCTCGTGCTGTCCTGCTTCTCAGACTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS CCA 90 bp AAAGTCTTGTATAACACCTTGAACAGAGAGGGCTCCCGATCCTTGTaGGGTGACTTGACAATCAGTGCCTCCACCTCCTCATTCACATCC +
Preference number: 5 (lower is better)
Translates to: KVLYNTLNREGSRSL*GDLTISASTSSFTS
Trigger: GGATGTGAATGAGGAGGTGGAGGCACTGATTGTCAAGTCACCCCACAAGGATCGGGAGCCCTCTCTGTTCAAGGTGTTATACAAGACTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GTTGCTGGCTCATGCCTGGACTCTGGGATCCTGGCCCTGCAGTCCTCATTGGATCTGTCATTCACGAAGTaGATAATCAATTCCAAGATC +
Preference number: 5 (lower is better)
Translates to: VAGSCLDSGILALQSSLDLSFTK*IINSKI
Trigger: GATCTTGGAATTGATTATCAACTTCGTGAATGACAG...ATCCAATGAGGACTGCAGGGCCAGGATCCCAGAGTCCAGGCATGAGCCAGCAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp AAAGAAGTAAACCAGACCCAAGGGTGGGATGATGACTGCGGCAATGGGCGTGGCATCAGCTTGATTCGGTaGTCTTTGCTCTTCATGTGT +
Preference number: 5 (lower is better)
Translates to: KEVNQTQGWDDDCGNGRGISLIR*SLLFMC
Trigger: ACACATGAAGAGCAAAGACAACCGAATCAAGCTGAT...GCCACGCCCATTGCCGCAGTCATCATCCCACCCTTGGGTCTGGTTTACTTCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp AGGTTATCTGTCTCTAGGTCCACAGCTGCGGTAGCCTCGTCCAACACTAGAATCTACAGCTTGAGGACTTaGATCCCATTGAGGATCTCG +
Preference number: 5 (lower is better)
Translates to: RLSVSRSTAAVASSNTRIYSLRT*IPLRIS
Trigger: CGAGATCCTCAATGGGATCAAAGTCCTCAAGCTGTA...GATTCTAGTGTTGGACGAGGCTACCGCAGCTGTGGACCTAGAGACAGATAACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp ATGAACATCTTGATGACCTGCGGGATCATGGAGTCCACTGTGTCCAGCTCCTTGTACAGCTTGAGGACTTaGATCCCATTGAGGATCTCG +
Preference number: 5 (lower is better)
Translates to: MNILMTCGIMESTVSSSLYSLRT*IPLRIS
Trigger: CGAGATCCTCAATGGGATCAAAGTCCTCAAGCTGTA...CAAGGAGCTGGACACAGTGGACTCCATGATCCCGCAGGTCATCAAGATGTTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp AAGAAACTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCGAGGGAAGCGCAAGATATaGAACAGGGCTAGGGACACA +
Preference number: 5 (lower is better)
Translates to: KKLMGDRRTLYSRSRCKRGKRKI*NRARDT
Trigger: TGTGTCCCTAGCCCTGTTCAATATCTTGCGCTTCCC...TCGCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GTTCTTGCTAACCATGGGGGTCTCTCTTTGGTCTGTAACTCACACAACCTAGAGGGTGATCGCAGAACATaGTATAGCAGGTCCAGGTGC +
Preference number: 5 (lower is better)
Translates to: VLANHGGLSLVCNSHNLEGDRRT*YSRSRC
Trigger: GCACCTGGACCTGCTATACAATGTTCTGCGATCACC...CTCTAGGTTGTGTGAGTTACAGACCAAAGAGAGACCCCCATGGTTAGCAAGAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS TCA 90 bp GGGATCTTTGGGAGGGGCATACACAATCCGTACAGGCTGCTTCCTTaGCTTATCACATTCCTTCTTCCAGTTATTCACCAGCACAGGTAC +
Preference number: 5 (lower is better)
Translates to: GIFGRGIHNPYRLLP*LITFLLPVIHQHRY
Trigger: GTACCTGTGCTGGTGAATAACTGGAAGAAGGAATGTGATAAGTCAAGGAAGCAGCCTGTACGGATTGTGTATGCCCCTCCCAAAGATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GTCACTCTGGTGAATGAAGCGCTCCTGCTCCTCAAAAGCACGGATGACACTGACAATCCTAAGGCAGTTTaGGTTTTGTTGAGGTGTGTC +
Preference number: 5 (lower is better)
Translates to: VTLVNEALLLLKSTDDTDNPKAV*VLLRCV
Trigger: GACACACCTCAACAAAACCAAAACTGCCTTAGGATT...GTCAGTGTCATCCGTGCTTTTGAGGAGCAGGAGCGCTTCATTCACCAGAGTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp AGTGAACCCATGAACATCTTGATGACCTGCGGGATCATGGAGTCCACTGTGTCCGTACAGGCTGCTTCCTaGACTTATCACATTCCTTCT +
Preference number: 5 (lower is better)
Translates to: SEPMNILMTCGIMESTVSVQAAS*TYHIPS
Trigger: AGAAGGAATGTGATAAGTCAAGGAAGCAGCCTGTAC...GGACACAGTGGACTCCATGATCCCGCAGGTCATCAAGATGTTCATGGGTTCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GTCTTTGATACCAGATTCTTGCCCGTGGGCACCATCCCTTCTGCTCTTGACTTTTTGATTCGGTTGTCTTaGCTCTTCATGTGTGCCACC +
Preference number: 5 (lower is better)
Translates to: VFDTRFLPVGTIPSALDFLIRLS*LFMCAT
Trigger: GGTGGCACACATGAAGAGCAAAGACAACCGAATCAA...AAAGTCAAGAGCAGAAGGGATGGTGCCCACGGGCAAGAATCTGGTATCAAAGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp ACACTGACTCCCAGCAAGGTCTCATTGAAGTGTGAGTACACAGGGGAACGGCTGATCAGCTTGATTCGGTaGTCTTTGCTCTTCATGTGT +
Preference number: 5 (lower is better)
Translates to: TLTPSKVSLKCEYTGERLISLIR*SLLFMC
Trigger: ACACATGAAGAGCAAAGACAACCGAATCAAGCTGAT...CAGCCGTTCCCCTGTGTACTCACACTTCAATGAGACCTTGCTGGGAGTCAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp ACAGTACAGTCTTCAAACTGTGTCCGGATGGTGGACTGGATAAGGTTATCTGTCGGGAAGCGCAAGATATaGAACAGGGCTAGGGACACA +
Preference number: 5 (lower is better)
Translates to: TVQSSNCVRMVDWIRLSVGKRKI*NRARDT
Trigger: TGTGTCCCTAGCCCTGTTCAATATCTTGCGCTTCCC...GACAGATAACCTTATCCAGTCCACCATCCGGACACAGTTTGAAGACTGTACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GGGACTGACATTAGAGCCAAAATTCAAAGCAAGTATGAACTGTGGCTGGCATCAAACAGCACAATGCAGTaGCCCACACACTCAAGGCGC +
Preference number: 5 (lower is better)
Translates to: GTDIRAKIQSKYELWLASNSTMQ*PTHSRR
Trigger: GCGCCTTGAGTGTGTGGGCAACTGCATTGTGCTGTT...TGATGCCAGCCACAGTTCATACTTGCTTTGAATTTTGGCTCTAATGTCAGTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp GGCGATGTTGACCCCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGAATCCTAAGGCAGTTTaGGTTTTGTTGAGGTGTGTC +
Preference number: 5 (lower is better)
Translates to: GDVDPINDDLPFCRLIDPNPKAV*VLLRCV
Trigger: GACACACCTCAACAAAACCAAAACTGCCTTAGGATT...CGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAACATCGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp TGCACCTTGCAAGATGCCCAAGGCCCCATAGACACTCAGCCGAAAATTCCTGTTAATCCTAAGGCAGTTTaGGTTTTGTTGAGGTGTGTC +
Preference number: 5 (lower is better)
Translates to: CTLQDAQGPIDTQPKIPVNPKAV*VLLRCV
Trigger: GACACACCTCAACAAAACCAAAACTGCCTTAGGATT...AACAGGAATTTTCGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp CCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGGAACAAACCCAGGGTACAGGCTGCTTCCTaGACTTATCACATTCCTTCT +
Preference number: 5 (lower is better)
Translates to: PSMMISPSADSLIRNKPRVQAAS*TYHIPS
Trigger: AGAAGGAATGTGATAAGTCAAGGAAGCAGCCTGTAC...CCTGGGTTTGTTCCGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp CAAAGAAACTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCTTGATTCGGTTGTCTTaGCTCTTCATGTGTGCCACC +
Preference number: 5 (lower is better)
Translates to: QRNSWVIAEHCIAGPGASLIRLS*LFMCAT
Trigger: GGTGGCACACATGAAGAGCAAAGACAACCGAATCAA...GCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GTTGACCCCATCAATGATGATCTCCCCTTCTGCAGACTCATTGATCCGGAACAATTGATTCGGTTGTCTTaGCTCTTCATGTGTGCCACC +
Preference number: 5 (lower is better)
Translates to: VDPINDDLPFCRLIDPEQLIRLS*LFMCAT
Trigger: GGTGGCACACATGAAGAGCAAAGACAACCGAATCAA...TTGTTCCGGATCAATGAGTCTGCAGAAGGGGAGATCATCATTGATGGGGTCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp ATGAACATCTTGATGACCTGCGGGATCATGGAGTCCACTGTGTCCAGCTCCTTGATCAGCTTGATTCGGTaGTCTTTGCTCTTCATGTGT +
Preference number: 5 (lower is better)
Translates to: MNILMTCGIMESTVSSSLISLIR*SLLFMC
Trigger: ACACATGAAGAGCAAAGACAACCGAATCAAGCTGAT...CAAGGAGCTGGACACAGTGGACTCCATGATCCCGCAGGTCATCAAGATGTTCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GTTCTTGCTAACCATGGGGGTCTCTCTTTGGTCTGTAACTCACACAACCTAGAGAGGACTTTGATCCCATaGAGGATCTCGTTCATCAGC +
Preference number: 5 (lower is better)
Translates to: VLANHGGLSLVCNSHNLERTLIP*RISFIS
Trigger: GCTGATGAACGAGATCCTCAATGGGATCAAAGTCCT...CTCTAGGTTGTGTGAGTTACAGACCAAAGAGAGACCCCCATGGTTAGCAAGAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp CTCATTGGATATGCCAGAGACCAGCTCACACCAAGCCAGCATCCTTGGCCATGCACACAAAGGCTTTCTTaGCATCTAGGATATTTCTCT +
Preference number: 5 (lower is better)
Translates to: LIGYARDQLTPSQHPWPCTQRLS*HLGYFS
Trigger: AGAGAAATATCCTAGATGCAAAGAAAGCCTTTGTGT...GCATGGCCAAGGATGCTGGCTTGGTGTGAGCTGGTCTCTGGCATATCCAATGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp CACAGCCATGGAGTAGCCAAATATTGCTGCACCTTGCAAGATGCCCAAGGCCCCACACAAAGGCTTTCTTaGCATCTAGGATATTTCTCT +
Preference number: 5 (lower is better)
Translates to: HSHGVAKYCCTLQDAQGPTQRLS*HLGYFS
Trigger: AGAGAAATATCCTAGATGCAAAGAAAGCCTTTGTGT...GGGGCCTTGGGCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCATGGCTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS TCA 90 bp CCTGACTTCTTTCCCAGAAAGAGTAGAAGAGGTCTGCCCAGCAGATaGTCCACAGAAAGAATCCTAAGGCATTGTGCAGCACTTTATCCA +
Preference number: 5 (lower is better)
Translates to: PDFFPRKSRRGLPSR*STERILRHCAALYP
Trigger: TGGATAAAGTGCTGCACAATGCCTTAGGATTCTTTCTGTGGATCATCTGCTGGGCAGACCTCTTCTACTCTTTCTGGGAAAGAAGTCAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154748.8
CDS-3UTR CAA 90 bp GTTCTTGCTAACCATGGGGGTCTCTCTTTGGTCTGTAACTCACACAACCTAGAGAAGGCAGTTTTGGTTTaGTTGAGGTGTGTCATCTGG +
Preference number: 5 (lower is better)
Translates to: VLANHGGLSLVCNSHNLEKAVLV*LRCVIW
Trigger: CCAGATGACACACCTCAACAAAACCAAAACTGCCTT...CTCTAGGTTGTGTGAGTTACAGACCAAAGAGAGACCCCCATGGTTAGCAAGAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp GTCTTTGATACCAGATTCTTGCCCGTGGGCACCATCCCTTCTGCTCTTGACTTTAATCCTAAGGCAGTTTaGGTTTTGTTGAGGTGTGTC +
Preference number: 5 (lower is better)
Translates to: VFDTRFLPVGTIPSALDFNPKAV*VLLRCV
Trigger: GACACACCTCAACAAAACCAAAACTGCCTTAGGATT...AAAGTCAAGAGCAGAAGGGATGGTGCCCACGGGCAAGAATCTGGTATCAAAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp CTGCACCTTGCAAGATGCCCAAGGCCCCATAGACACTCAGCCGAAAATTCCTGTCTGTCATTCACGAAGTaGATAATCAATTCCAAGATC +
Preference number: 5 (lower is better)
Translates to: LHLARCPRPHRHSAENSCLSFTK*IINSKI
Trigger: GATCTTGGAATTGATTATCAACTTCGTGAATGACAG...ACAGGAATTTTCGGCTGAGTGTCTATGGGGCCTTGGGCATCTTGCAAGGTGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp AAGAAACTCATGGGTGATCGCAGAACATTGTATAGCAGGTCCAGGTGCAAGCGAATCTCGTTCATCAGCTaGATTCGGTTGTCTTTGCTC +
Preference number: 5 (lower is better)
Translates to: KKLMGDRRTLYSRSRCKRISFIS*IRLSLL
Trigger: GAGCAAAGACAACCGAATCAAGCTGATGAACGAGAT...TCGCTTGCACCTGGACCTGCTATACAATGTTCTGCGATCACCCATGAGTTTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp CAGCCCCACTTATTACCAAGAAGTATTTGGGACACTTGTGACACAGCTTTGTCCTGGAGTAGCCAAATATaGCTGCACCTTGCAAGATGC +
Preference number: 5 (lower is better)
Translates to: QPHLLPRSIWDTCDTALSWSSQI*LHLARC
Trigger: GCATCTTGCAAGGTGCAGCAATATTTGGCTACTCCA...GGACAAAGCTGTGTCACAAGTGTCCCAAATACTTCTTGGTAATAAGTGGGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp CAGCCCCACTTATTACCAAGAAGTATTTGGGACACTTGTGACACAGCTTTGTCCGTACAGGCTGCTTCCTaGACTTATCACATTCCTTCT +
Preference number: 5 (lower is better)
Translates to: QPHLLPRSIWDTCDTALSVQAAS*TYHIPS
Trigger: AGAAGGAATGTGATAAGTCAAGGAAGCAGCCTGTAC...GGACAAAGCTGTGTCACAAGTGTCCCAAATACTTCTTGGTAATAAGTGGGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp AAGTGGGGTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCCTGTCATTCACGAAGTaGATAATCAATTCCAAGATC +
Preference number: 5 (lower is better)
Translates to: KWGASVFQLLQGQIQDEALSFTK*IINSKI
Trigger: GATCTTGGAATTGATTATCAACTTCGTGAATGACAG...GGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCACCCCACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp TTCTCTGGGACTGACATTAGAGCCAAAATTCAAAGCAAGTATGAACTGTGGCTGCCAACACTAGAATCTTaGTCTTCCTCAGCAGAGCCC +
Preference number: 5 (lower is better)
Translates to: FSGTDIRAKIQSKYELWLPTLES*SSSAEP
Trigger: GGGCTCTGCTGAGGAAGACAAAGATTCTAGTGTTGG...CAGCCACAGTTCATACTTGCTTTGAATTTTGGCTCTAATGTCAGTCCCAGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp CAGCCCCACTTATTACCAAGAAGTATTTGGGACACTTGTGACACAGCTTTGTCCATCAGCTTGATTCGGTaGTCTTTGCTCTTCATGTGT +
Preference number: 5 (lower is better)
Translates to: QPHLLPRSIWDTCDTALSISLIR*SLLFMC
Trigger: ACACATGAAGAGCAAAGACAACCGAATCAAGCTGAT...GGACAAAGCTGTGTCACAAGTGTCCCAAATACTTCTTGGTAATAAGTGGGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp CCAAATGGTGACAGACGCCTAAGTATTTTGCTTCCTTTTAGTTTGGTTTCGTTTCCCATCTCTGAGATCTaGCCGCCACTCATGACAATG +
Preference number: 5 (lower is better)
Translates to: PNGDRRLSILLPFSLVSFPISEI*PPLMTM
Trigger: CATTGTCATGAGTGGCGGCAAGATCTCAGAGATGGG...AAACGAAACCAAACTAAAAGGAAGCAAAATACTTAGGCGTCTGTCACCATTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp CCAAATGGTGACAGACGCCTAAGTATTTTGCTTCCTTTTAGTTTGGTTTCGTTTGTCTTGTATAACACCTaGAACAGAGAGGGCTCCCGA +
Preference number: 5 (lower is better)
Translates to: PNGDRRLSILLPFSLVSFVLYNT*NREGSR
Trigger: TCGGGAGCCCTCTCTGTTCAAGGTGTTATACAAGAC...AAACGAAACCAAACTAAAAGGAAGCAAAATACTTAGGCGTCTGTCACCATTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp GTGCATCTGTCTTCCAGCTTCTTCAAGGTCAGATCCAGGATGAAGCCAAATGGTCTGTCATTCACGAAGTaGATAATCAATTCCAAGATC +
Preference number: 5 (lower is better)
Translates to: VHLSSSFFKVRSRMKPNGLSFTK*IINSKI
Trigger: GATCTTGGAATTGATTATCAACTTCGTGAATGACAG...ACCATTTGGCTTCATCCTGGATCTGACCTTGAAGAAGCTGGAAGACAGATGCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS-3UTR CAA 90 bp AAGGTCAGATCCAGGATGAAGCCAAATGGTGACAGACGCCTAAGTATTTTGCTTGTGACATTTATGTGCTaGAGAACCAAGTCCAAGTCT +
Preference number: 5 (lower is better)
Translates to: KVRSRMKPNGDRRLSILLVTFMC*RTKSKS
Trigger: AGACTTGGACTTGGTTCTCAAGCACATAAATGTCAC...AAGCAAAATACTTAGGCGTCTGTCACCATTTGGCTTCATCCTGGATCTGACCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS-3UTR CAA 90 bp AGAGGCCGGAAACTCAAGTTACAGATAGTTCTGAGCTGTCCAATATGGGTGCAAACACAAAGGCTTTCTTaGCATCTAGGATATTTCTCT +
Preference number: 5 (lower is better)
Translates to: RGRKLKLQIVLSCPIWVQTQRLS*HLGYFS
Trigger: AGAGAAATATCCTAGATGCAAAGAAAGCCTTTGTGT...TTGCACCCATATTGGACAGCTCAGAACTATCTGTAACTTGAGTTTCCGGCCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS CCA 72 bp CACTGTCATCCTCCGAGGCCAGGTCCTGCTCAGCGTTaGCATAGGTGCGCAGGAACTCAGCGAAGGCCCCAT +
Preference number: 6 (lower is better)
Translates to: HCHPPRPGPAQR*HRCAGTQRRPH
Trigger: ATGGGGCCTTCGCTGAGTTCCTGCGCACCTATGCCAACGCTGAGCAGGACCTGGCCTCGGAGGATGACAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS GCA 72 bp TGCCAGTGTCTGCAGACAGGCGCTGACAAACAGCAGTaGTGTGTAAAAGTAGCCCTGCCAGTCGGGAGCCTC +
Preference number: 6 (lower is better)
Translates to: CQCLQTGADKQQ*CVKVALPVGSL
Trigger: GAGGCTCCCGACTGGCAGGGCTACTTTTACACAGCACTGCTGTTTGTCAGCGCCTGTCTGCAGACACTGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS TCA 72 bp CATTTTCCACCGGCTTTGACTCCTTCCCTGAACCACTaGCACTGTCATCCTCCGAGGCCAGGTCCTGCTCAG +
Preference number: 6 (lower is better)
Translates to: HFPPALTPSLNH*HCHPPRPGPAQ
Trigger: CTGAGCAGGACCTGGCCTCGGAGGATGACAGTGTCAGTGGTTCAGGGAAGGAGTCAAAGCCGGTGGAAAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS TCA 72 bp CACCTTGAACAGAGAGGGCTCCCGATCCTTGTGGGGTaGCTTGACAATCAGTGCCTCCACCTCCTCATTCAC +
Preference number: 6 (lower is better)
Translates to: HLEQRGLPILVG*LDNQCLHLLIH
Trigger: GTGAATGAGGAGGTGGAGGCACTGATTGTCAAGTCACCCCACAAGGATCGGGAGCCCTCTCTGTTCAAGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS GCA 72 bp GCCACTGACGAAGCAGATATGAAAGTACTGGTGGAGTaGCAGTGTCTGCAGACAGGCGCTGACAAACAGCAG +
Preference number: 6 (lower is better)
Translates to: ATDEADMKVLVE*QCLQTGADKQQ
Trigger: CTGCTGTTTGTCAGCGCCTGTCTGCAGACACTGGCACTCCACCAGTACTTTCATATCTGCTTCGTCAGTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS GCA 72 bp CAGTGTGGGAGGTTCACCCCTGGCCCAAGTGAAGGTTaGATTCTTCACAGTGATGCTATTCCCTTCGCCACT +
Preference number: 6 (lower is better)
Translates to: QCGRFTPGPSEG*ILHSDAIPFAT
Trigger: AGTGGCGAAGGGAATAGCATCACTGTGAAGAATGCAACCTTCACTTGGGCCAGGGGTGAACCTCCCACACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS CCA 72 bp CCCACCACTCTTGATCGACCTCCGCTCAATGCTGTCTaGCTCCAGCTCCTCATGAGACAGAAAAATCCTGAG +
Preference number: 6 (lower is better)
Translates to: PTTLDRPPLNAV*LQLLMRQKNPE
Trigger: CTCAGGATTTTTCTGTCTCATGAGGAGCTGGAGCCAGACAGCATTGAGCGGAGGTCGATCAAGAGTGGTGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS CAA 72 bp TTGAACAGAGAGGGCTCCCGATCCTTGTGGGGTGACTaGACAATCAGTGCCTCCACCTCCTCATTCACATCC +
Preference number: 6 (lower is better)
Translates to: LNREGSRSLWGD*TISASTSSFTS
Trigger: GGATGTGAATGAGGAGGTGGAGGCACTGATTGTCAAGTCACCCCACAAGGATCGGGAGCCCTCTCTGTTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS CAA 72 bp CCCTGCCAGTCGGGAGCCTCCCTGTCATTCACGAAGTaGATAATCAATTCCAAGATCTTGGGGCCGGCAAAC +
Preference number: 6 (lower is better)
Translates to: PCQSGASLSFTK*IINSKILGPAN
Trigger: GTTTGCCGGCCCCAAGATCTTGGAATTGATTATCAACTTCGTGAATGACAGGGAGGCTCCCGACTGGCAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS CAA 72 bp GCATTCTTCACAGTGATGCTATTCCCTTCGCCACTCTaGATCGACCTCCGCTCAATGCTGTCTGGCTCCAGC +
Preference number: 6 (lower is better)
Translates to: AFFTVMLFPSPL*IDLRSMLSGSS
Trigger: GCTGGAGCCAGACAGCATTGAGCGGAGGTCGATCAAGAGTGGCGAAGGGAATAGCATCACTGTGAAGAATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS CAA 90 bp GACACGCTGGCCTGCACAATGCTGCTGATAACCATGGGCAGGATGTaGAGTGGGAAGCGCAAGATATTGAACAGGGCTAGGGACACAAAG +
Preference number: 6 (lower is better)
Translates to: DTLACTMLLITMGRM*SGKRKILNRARDTK
Trigger: CTTTGTGTCCCTAGCCCTGTTCAATATCTTGCGCTTCCCACTCAACATCCTGCCCATGGTTATCAGCAGCATTGTGCAGGCCAGCGTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS TCA 72 bp GCAGTCTTGATGCGCATGCCACTGACGAAGCAGATATaGAAGTACTGGTGGAGTGCCAGTGTCTGCAGACAG +
Preference number: 6 (lower is better)
Translates to: AVLMRMPLTKQI*KYWWSASVCRQ
Trigger: CTGTCTGCAGACACTGGCACTCCACCAGTACTTTCATATCTGCTTCGTCAGTGGCATGCGCATCAAGACTGC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS GCA 72 bp GAAAGGTGTGCACACCCACGTGAATGTGCCTACAGCTaGCAAGTAGGCAGATTTCTTCAGCACCTTGAGCTC +
Preference number: 6 (lower is better)
Translates to: ERCAHPRECAYS*QVGRFLQHLEL
Trigger: GAGCTCAAGGTGCTGAAGAAATCTGCCTACTTGGCAGCTGTAGGCACATTCACGTGGGTGTGCACACCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS GCA 72 bp AGAAAAATCCTGAGACGCTTGAGGGACACGCTGGCCTaGACAATGCTGCTGATAACCATGGGCAGGATGTTG +
Preference number: 6 (lower is better)
Translates to: RKILRRLRDTLA*TMLLITMGRML
Trigger: CAACATCCTGCCCATGGTTATCAGCAGCATTGTGCAGGCCAGCGTGTCCCTCAAGCGTCTCAGGATTTTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS CCA 72 bp AAAGAGGCACTGGATTCTGGGCATGGATTCCGGTCATaGACAGTTTCAGAGAACAGGGGTGAGCAGTCTGAG +
Preference number: 6 (lower is better)
Translates to: KEALDSGHGFRS*TVSENRGEQSE
Trigger: CTCAGACTGCTCACCCCTGTTCTCTGAAACTGTCCATGACCGGAATCCATGCCCAGAATCCAGTGCCTCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS CCA 72 bp TATAACACCTTGAACAGAGAGGGCTCCCGATCCTTGTaGGGTGACTTGACAATCAGTGCCTCCACCTCCTCA +
Preference number: 6 (lower is better)
Translates to: YNTLNREGSRSL*GDLTISASTSS
Trigger: TGAGGAGGTGGAGGCACTGATTGTCAAGTCACCCCACAAGGATCGGGAGCCCTCTCTGTTCAAGGTGTTATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS CCA 72 bp TTCGCCACTCTTGATCGACCTCCGCTCAATGCTGTCTaGCTCCAGCTCCTCATGAGACAGAAAAATCCTGAG +
Preference number: 6 (lower is better)
Translates to: FATLDRPPLNAV*LQLLMRQKNPE
Trigger: CTCAGGATTTTTCTGTCTCATGAGGAGCTGGAGCCAGACAGCATTGAGCGGAGGTCGATCAAGAGTGGCGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100167.10
CDS CAA 72 bp TTGTATAACACCTTGAACAGAGAGGGCTCCCGATCCTaGTGGGGTGACTTGACAATCAGTGCCTCCACCTCC +
Preference number: 6 (lower is better)
Translates to: LYNTLNREGSRS*WGDLTISASTS
Trigger: GGAGGTGGAGGCACTGATTGTCAAGTCACCCCACAAGGATCGGGAGCCCTCTCTGTTCAAGGTGTTATACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS CAA 72 bp GCCTGCACAATGCTGCTGATAACCATGGGCAGGATGTaGAGTGGGAAGCGCAAGATATTGAACAGGGCTAGG +
Preference number: 6 (lower is better)
Translates to: ACTMLLITMGRM*SGKRKILNRAR
Trigger: CCTAGCCCTGTTCAATATCTTGCGCTTCCCACTCAACATCCTGCCCATGGTTATCAGCAGCATTGTGCAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS CAA 90 bp TATAACACCTTGAACAGAGAGGGCTCCCGATCCTTGTGGGGTGACTaGACAATCAGTGCCTCCACCTCCTCATTCACATCCAACTGGGAA +
Preference number: 6 (lower is better)
Translates to: YNTLNREGSRSLWGD*TISASTSSFTSNWE
Trigger: TTCCCAGTTGGATGTGAATGAGGAGGTGGAGGCACTGATTGTCAAGTCACCCCACAAGGATCGGGAGCCCTCTCTGTTCAAGGTGTTATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS CCA 72 bp AATCCTGGAAAGGAAAGAGGCACTGGATTCTGGGCATaGATTCCGGTCATGGACAGTTTCAGAGAACAGGGG +
Preference number: 6 (lower is better)
Translates to: NPGKERGTGFWA*IPVMDSFREQG
Trigger: CCCCTGTTCTCTGAAACTGTCCATGACCGGAATCCATGCCCAGAATCCAGTGCCTCTTTCCTTTCCAGGATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS CAA 90 bp TCATTCACATCCAACTGGGAACTTCCCTTAGGCTTGCTGGGATCTTaGGGAGGGGCATACACAATCCGTACAGGCTGCTTCCTTGACTTA +
Preference number: 6 (lower is better)
Translates to: SFTSNWELPLGLLGS*GGAYTIRTGCFLDL
Trigger: TAAGTCAAGGAAGCAGCCTGTACGGATTGTGTATGCCCCTCCCAAAGATCCCAGCAAGCCTAAGGGAAGTTCCCAGTTGGATGTGAATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS CAA 90 bp CCAAAAGTCTTGTATAACACCTTGAACAGAGAGGGCTCCCGATCCTaGTGGGGTGACTTGACAATCAGTGCCTCCACCTCCTCATTCACA +
Preference number: 6 (lower is better)
Translates to: PKVLYNTLNREGSRS*WGDLTISASTSSFT
Trigger: TGTGAATGAGGAGGTGGAGGCACTGATTGTCAAGTCACCCCACAAGGATCGGGAGCCCTCTCTGTTCAAGGTGTTATACAAGACTTTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS TCA 72 bp TGGTCTTCATGGCCATCACAGCATTTAAGGGTACCATaGGAATCATCACAGCCACTCCAGCCAGCACAGAAG +
Preference number: 6 (lower is better)
Translates to: WSSWPSQHLRVP*ESSQPLQPAQK
Trigger: CTTCTGTGCTGGCTGGAGTGGCTGTGATGATTCTCATGGTACCCTTAAATGCTGTGATGGCCATGAAGACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS CAA 90 bp CTGCTGATAACCATGGGCAGGATGTTGAGTGGGAAGCGCAAGATATaGAACAGGGCTAGGGACACAAAGGCTTTCTTTGCATCTAGGATA +
Preference number: 6 (lower is better)
Translates to: LLITMGRMLSGKRKI*NRARDTKAFFASRI
Trigger: TATCCTAGATGCAAAGAAAGCCTTTGTGTCCCTAGCCCTGTTCAATATCTTGCGCTTCCCACTCAACATCCTGCCCATGGTTATCAGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS GCA 72 bp GGATCTTTGGGAGGGGCATACACAATCCGTACAGGCTaGTTCCTTGACTTATCACATTCCTTCTTCCAGTTA +
Preference number: 6 (lower is better)
Translates to: GSLGGAYTIRTG*FLDLSHSFFQL
Trigger: TAACTGGAAGAAGGAATGTGATAAGTCAAGGAAGCAGCCTGTACGGATTGTGTATGCCCCTCCCAAAGATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS GCA 72 bp CAGCAGATGATCCACAGAAAGAATCCTAAGGCATTGTaGAGCACTTTATCCAGTAAGCCAATTCCTCGGCCA +
Preference number: 6 (lower is better)
Translates to: QQMIHRKNPKAL*STLSSKPIPRP
Trigger: TGGCCGAGGAATTGGCTTACTGGATAAAGTGCTGCACAATGCCTTAGGATTCTTTCTGTGGATCATCTGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154748.8
CDS CCA 72 bp GAAAGTAATCCTGGAAAGGAAAGAGGCACTGGATTCTaGGCATGGATTCCGGTCATGGACAGTTTCAGAGAA +
Preference number: 6 (lower is better)
Translates to: ESNPGKERGTGF*AWIPVMDSFRE
Trigger: TTCTCTGAAACTGTCCATGACCGGAATCCATGCCCAGAATCCAGTGCCTCTTTCCTTTCCAGGATTACTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS CAA 72 bp TGGGAGGGGCATACACAATCCGTACAGGCTGCTTCCTaGACTTATCACATTCCTTCTTCCAGTTATTCACCA +
Preference number: 6 (lower is better)
Translates to: WEGHTQSVQAAS*TYHIPSSSYSP
Trigger: TGGTGAATAACTGGAAGAAGGAATGTGATAAGTCAAGGAAGCAGCCTGTACGGATTGTGTATGCCCCTCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS TCA 72 bp TCATCAGGTCATGAAGGGCCTTGTACAGGAAGCTCATaGGGAAGTAGGGACCAAAAGTCTTGTATAACACCT +
Preference number: 6 (lower is better)
Translates to: SSGHEGPCTGSS*GSRDQKSCITP
Trigger: AGGTGTTATACAAGACTTTTGGTCCCTACTTCCTCATGAGCTTCCTGTACAAGGCCCTTCATGACCTGATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS GCA 72 bp GTTGACAATCTCTCCGACCGTGGAAGATTTTCTAGCTaGATTGGTGATCAAAAGAGCCTTACGATAGACAGC +
Preference number: 6 (lower is better)
Translates to: VDNLSDRGRFSS*IGDQKSLTIDS
Trigger: GCTGTCTATCGTAAGGCTCTTTTGATCACCAATGCAGCTAGAAAATCTTCCACGGTCGGAGAGATTGTCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000147759.8
CDS TCA 72 bp TTTCCCAGAAAGAGTAGAAGAGGTCTGCCCAGCAGATaGTCCACAGAAAGAATCCTAAGGCAGTTTTGGTTT +
Preference number: 6 (lower is better)
Translates to: FPRKSRRGLPSR*STERILRQFWF
Trigger: AAACCAAAACTGCCTTAGGATTCTTTCTGTGGATCATCTGCTGGGCAGACCTCTTCTACTCTTTCTGGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000100167.10
ENSMUST00000130671.8
ENSMUST00000133454.8
ENSMUST00000134776.8
ENSMUST00000144676.3
ENSMUST00000147759.8