Pregenerated sensors for A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027596Ensembl transcript IDs: ENSMUST00000029123.3, ENSMUST00000109697.8, ENSMUST00000137333.8, ENSMUST00000148402.8
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGCGCCCACAAGTCACAACCACTGACCACGCCCACCCACAAGCCCCACCCACAGAGAAGCGCGGGACCCTaGAGCCCCGCCCAATCACCC | + |
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Preference number: 2 (lower is better) Translates to: SAHKSQPLTTPTHKPHPQRSAGP*SPAQSP Trigger: GGGTGATTGGGCGGGGCTTCAGGGTCCCGCGCTTCT...CTGTGGGTGGGGCTTGTGGGTGGGCGTGGTCAGTGGTTGTGACTTGTGGGCGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| 3UTR-3UTR TCA 90 bp | GAAAGCGCCCACAAGTCACAACCACTGACCACGCCCACCCACAAGCCCCACCCAAGAAGCGCGGGACCCTaGAGCCCCGCCCAATCACCC | + |
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Preference number: 2 (lower is better) Translates to: ESAHKSQPLTTPTHKPHPRSAGP*SPAQSP Trigger: GGGTGATTGGGCGGGGCTTCAGGGTCCCGCGCTTCT...TGGGTGGGGCTTGTGGGTGGGCGTGGTCAGTGGTTGTGACTTGTGGGCGCTTTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR GCA 90 bp | ACCCACAGAGACCCGCCCCTCAGCCTAGAAGCGCGGGACCCTGAAGCCCCGCCCCGGGTGCGGGTGGCTTaGAGCTGTCGCGGGTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: THRDPPLSLEARDPEAPPRVRVA*SCRGWP Trigger: TGGCCACCCGCGACAGCTGCAAGCCACCCGCACCCG...GGGCGGGGCTTCAGGGTCCCGCGCTTCTAGGCTGAGGGGCGGGTCTCTGTGGGT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR CCA 90 bp | ACCCACAGAGACCCGCCCCTCAGCCTAGAAGCGCGGGACCCTGAAGCCCCGCCCGCAGGCGGGTGCGGGTaGCTTGCAGCTGTCGCGGGT | + |
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Preference number: 4 (lower is better) Translates to: THRDPPLSLEARDPEAPPAGGCG*LAAVAG Trigger: ACCCGCGACAGCTGCAAGCCACCCGCACCCGCCTGC...GGGCGGGGCTTCAGGGTCCCGCGCTTCTAGGCTGAGGGGCGGGTCTCTGTGGGT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR GCA 90 bp | GACCCGCCCCTCAGCCTAGAAGCGCGGGACCCTGAAGCCCCGCCCAATCACCCGGTCGCAGCAGGCGGGTaGGGGTGGCTTGCAGCTGTC | + |
|
Preference number: 4 (lower is better) Translates to: DPPLSLEARDPEAPPNHPVAAGG*GWLAAV Trigger: GACAGCTGCAAGCCACCCGCACCCGCCTGCTGCGAC...CGGGTGATTGGGCGGGGCTTCAGGGTCCCGCGCTTCTAGGCTGAGGGGCGGGTC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR CCA 90 bp | ACCCACAGAGACCCGCCCCTCAGCCTAGAAGCGCGGGACCCTGAAGCCCCGCCCTGCAGCTGTCGCGGGTaGCCACGCAGGGCGAAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: THRDPPLSLEARDPEAPPCSCRG*PRRAKV Trigger: CACCTTCGCCCTGCGTGGCCACCCGCGACAGCTGCA...GGGCGGGGCTTCAGGGTCCCGCGCTTCTAGGCTGAGGGGCGGGTCTCTGTGGGT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR GCA 90 bp | GAAGCCCCGCCCAATCACCCGTTCCCGAAGCTGCGCGCGCAGCGAAGAAGCTGCCGGGTGCGGGTGGCTTaGAGCTGTCGCGGGTGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: EAPPNHPFPKLRAQRRSCRVRVA*SCRGWP Trigger: TGGCCACCCGCGACAGCTGCAAGCCACCCGCACCCG...GCAGCTTCTTCGCTGCGCGCGCAGCTTCGGGAACGGGTGATTGGGCGGGGCTTC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR CCA 90 bp | AGCCCCACCCACAGAGACCCGCCCCTCAGCCTAGAAGCGCGGGACCCTGAAGCCTGCAGCTGTCGCGGGTaGCCACGCAGGGCGAAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: SPTHRDPPLSLEARDPEACSCRG*PRRAKV Trigger: CACCTTCGCCCTGCGTGGCCACCCGCGACAGCTGCA...GGCTTCAGGGTCCCGCGCTTCTAGGCTGAGGGGCGGGTCTCTGTGGGTGGGGCT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR CCA 90 bp | AGAGACCCGCCCCTCAGCCTAGAAGCGCGGGACCCTGAAGCCCCGCCCAATCACGCAGGCGGGTGCGGGTaGCTTGCAGCTGTCGCGGGT | + |
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Preference number: 4 (lower is better) Translates to: RDPPLSLEARDPEAPPNHAGGCG*LAAVAG Trigger: ACCCGCGACAGCTGCAAGCCACCCGCACCCGCCTGC...GTGATTGGGCGGGGCTTCAGGGTCCCGCGCTTCTAGGCTGAGGGGCGGGTCTCT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR CCA 90 bp | ACCCACAGAGACCCGCCCCTCAGCCTAGAAGCGCGGGACCCTGAAGCCCCGCCCCCGAAGAAACGGCACTaGCAGGAGGCGCACGGGTCG | + |
|
Preference number: 4 (lower is better) Translates to: THRDPPLSLEARDPEAPPPKKRH*QEAHGS Trigger: CGACCCGTGCGCCTCCTGCCAGTGCCGTTTCTTCGG...GGGCGGGGCTTCAGGGTCCCGCGCTTCTAGGCTGAGGGGCGGGTCTCTGTGGGT 70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR TCA 90 bp | ACCCACAGAGACCCGCCCCTCAGCCTAGAAGCGCGGGACCCTGAAGCCCCGCCCGGTGGCTGTGGACGGTaGAGAAGCACAGGAAGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: THRDPPLSLEARDPEAPPGGCGR*RSTGSP Trigger: TGGGCTTCCTGTGCTTCTTCACCGTCCACAGCCACC...GGGCGGGGCTTCAGGGTCCCGCGCTTCTAGGCTGAGGGGCGGGTCTCTGTGGGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR GCA 90 bp | ACCCACAGAGACCCGCCCCTCAGCCTAGAAGCGCGGGACCCTGAAGCCCCGCCCAAGCGTCTCCTCGAGTaGCAGGTGGCTGTGGACGGT | + |
|
Preference number: 4 (lower is better) Translates to: THRDPPLSLEARDPEAPPKRLLE*QVAVDG Trigger: ACCGTCCACAGCCACCTGGCACTCGAGGAGACGCTT...GGGCGGGGCTTCAGGGTCCCGCGCTTCTAGGCTGAGGGGCGGGTCTCTGTGGGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR CCA 90 bp | GAAGCCCCGCCCAATCACCCGTTCCCGAAGCTGCGCGCGCAGCGAAGAAGCTGCCCGAAGAAACGGCACTaGCAGGAGGCGCACGGGTCG | + |
|
Preference number: 4 (lower is better) Translates to: EAPPNHPFPKLRAQRRSCPKKRH*QEAHGS Trigger: CGACCCGTGCGCCTCCTGCCAGTGCCGTTTCTTCGG...GCAGCTTCTTCGCTGCGCGCGCAGCTTCGGGAACGGGTGATTGGGCGGGGCTTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR TCA 90 bp | AGCCCCACCCACAGAGACCCGCCCCTCAGCCTAGAAGCGCGGGACCCTGAAGCCGGTGGCTGTGGACGGTaGAGAAGCACAGGAAGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: SPTHRDPPLSLEARDPEAGGCGR*RSTGSP Trigger: TGGGCTTCCTGTGCTTCTTCACCGTCCACAGCCACC...GGCTTCAGGGTCCCGCGCTTCTAGGCTGAGGGGCGGGTCTCTGTGGGTGGGGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR CCA 90 bp | AGAGACCCGCCCCTCAGCCTAGAAGCGCGGGACCCTGAAGCCCCGCCCAATCACAGTGCCAGGTGGCTGTaGACGGTGAAGAAGCACAGG | + |
|
Preference number: 4 (lower is better) Translates to: RDPPLSLEARDPEAPPNHSARWL*TVKKHR Trigger: CCTGTGCTTCTTCACCGTCCACAGCCACCTGGCACT...GTGATTGGGCGGGGCTTCAGGGTCCCGCGCTTCTAGGCTGAGGGGCGGGTCTCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR GCA 90 bp | GAAAGCGCCCACAAGTCACAACCACTGACCACGCCCACCCACAAGCCCCACCCAAAGCGTCTCCTCGAGTaGCAGGTGGCTGTGGACGGT | + |
|
Preference number: 4 (lower is better) Translates to: ESAHKSQPLTTPTHKPHPKRLLE*QVAVDG Trigger: ACCGTCCACAGCCACCTGGCACTCGAGGAGACGCTT...TGGGTGGGGCTTGTGGGTGGGCGTGGTCAGTGGTTGTGACTTGTGGGCGCTTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR CCA 90 bp | GACCCGCCCCTCAGCCTAGAAGCGCGGGACCCTGAAGCCCCGCCCAATCACCCGTCGAAGCCTTTTTCTTaGAAGACCTCTTCCGCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: DPPLSLEARDPEAPPNHPSKPFS*KTSSAS Trigger: AGAAGCGGAAGAGGTCTTCCAAGAAAAAGGCTTCGA...CGGGTGATTGGGCGGGGCTTCAGGGTCCCGCGCTTCTAGGCTGAGGGGCGGGTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR CCA 90 bp | CTGAAGCCCCGCCCAATCACCCGTTCCCGAAGCTGCGCGCGCAGCGAAGAAGCTTCGAAGCCTTTTTCTTaGAAGACCTCTTCCGCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: LKPRPITRSRSCARSEEASKPFS*KTSSAS Trigger: AGAAGCGGAAGAGGTCTTCCAAGAAAAAGGCTTCGA...AGCTTCTTCGCTGCGCGCGCAGCTTCGGGAACGGGTGATTGGGCGGGGCTTCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS GCA 90 bp | ACTGGCAGGAGGCGCACGGGTCGCAGCAGGCGGGTGCGGGTGGCTTaGAGCTGTCGCGGGTGGCCACGCAGGGCGAAGGTGGCGGGGGCC | + |
|
Preference number: 5 (lower is better) Translates to: TGRRRTGRSRRVRVA*SCRGWPRRAKVAGA Trigger: GGCCCCCGCCACCTTCGCCCTGCGTGGCCACCCGCGACAGCTGCAAGCCACCCGCACCCGCCTGCTGCGACCCGTGCGCCTCCTGCCAGT 77% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS CCA 90 bp | ACGGCACTGGCAGGAGGCGCACGGGTCGCAGCAGGCGGGTGCGGGTaGCTTGCAGCTGTCGCGGGTGGCCACGCAGGGCGAAGGTGGCGG | + |
|
Preference number: 5 (lower is better) Translates to: TALAGGARVAAGGCG*LAAVAGGHAGRRWR Trigger: CCGCCACCTTCGCCCTGCGTGGCCACCCGCGACAGCTGCAAGCCACCCGCACCCGCCTGCTGCGACCCGTGCGCCTCCTGCCAGTGCCGT 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS GCA 90 bp | GAAGAAACGGCACTGGCAGGAGGCGCACGGGTCGCAGCAGGCGGGTaGGGGTGGCTTGCAGCTGTCGCGGGTGGCCACGCAGGGCGAAGG | + |
|
Preference number: 5 (lower is better) Translates to: EETALAGGARVAAGG*GWLAAVAGGHAGRR Trigger: CCTTCGCCCTGCGTGGCCACCCGCGACAGCTGCAAGCCACCCGCACCCGCCTGCTGCGACCCGTGCGCCTCCTGCCAGTGCCGTTTCTTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS CCA 90 bp | ACGGGTCGCAGCAGGCGGGTGCGGGTGGCTTGCAGCTGTCGCGGGTaGCCACGCAGGGCGAAGGTGGCGGGGGCCTTGCCACCTTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: TGRSRRVRVACSCRG*PRRAKVAGALPPSS Trigger: TGAAGAAGGTGGCAAGGCCCCCGCCACCTTCGCCCTGCGTGGCCACCCGCGACAGCTGCAAGCCACCCGCACCCGCCTGCTGCGACCCGT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR CAA 90 bp | GAAGCCCCGCCCAATCACCCGTTCCCGAAGCTGCGCGCGCAGCGAAGAAGCTGCGCGGGTGCGGGTGGCTaGCAGCTGTCGCGGGTGGCC | + |
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Preference number: 5 (lower is better) Translates to: EAPPNHPFPKLRAQRRSCAGAGG*QLSRVA Trigger: GGCCACCCGCGACAGCTGCAAGCCACCCGCACCCGC...GCAGCTTCTTCGCTGCGCGCGCAGCTTCGGGAACGGGTGATTGGGCGGGGCTTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS CCA 90 bp | GGGTTGAGTACTCGACAGGTGCAGGCGCTGCCGAAGAAACGGCACTaGCAGGAGGCGCACGGGTCGCAGCAGGCGGGTGCGGGTGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: GLSTRQVQALPKKRH*QEAHGSQQAGAGGL Trigger: CAAGCCACCCGCACCCGCCTGCTGCGACCCGTGCGCCTCCTGCCAGTGCCGTTTCTTCGGCAGCGCCTGCACCTGTCGAGTACTCAACCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR CAA 90 bp | GAAGCCCCGCCCAATCACCCGTTCCCGAAGCTGCGCGCGCAGCGAAGAAGCTGCAAGGTGGCGGGGGCCTaGCCACCTTCTTCATCGAAG | + |
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Preference number: 5 (lower is better) Translates to: EAPPNHPFPKLRAQRRSCKVAGA*PPSSSK Trigger: CTTCGATGAAGAAGGTGGCAAGGCCCCCGCCACCTT...GCAGCTTCTTCGCTGCGCGCGCAGCTTCGGGAACGGGTGATTGGGCGGGGCTTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS CCA 90 bp | TGCGGGTGGCTTGCAGCTGTCGCGGGTGGCCACGCAGGGCGAAGGTaGCGGGGGCCTTGCCACCTTCTTCATCGAAGCCTTTTTCTTGGA | + |
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Preference number: 5 (lower is better) Translates to: CGWLAAVAGGHAGRR*RGPCHLLHRSLFLG Trigger: TCCAAGAAAAAGGCTTCGATGAAGAAGGTGGCAAGGCCCCCGCCACCTTCGCCCTGCGTGGCCACCCGCGACAGCTGCAAGCCACCCGCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR CAA 90 bp | CTGAAGCCCCGCCCAATCACCCGTTCCCGAAGCTGCGCGCGCAGCGAAGAAGCTAAGGTGGCGGGGGCCTaGCCACCTTCTTCATCGAAG | + |
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Preference number: 5 (lower is better) Translates to: LKPRPITRSRSCARSEEAKVAGA*PPSSSK Trigger: CTTCGATGAAGAAGGTGGCAAGGCCCCCGCCACCTT...AGCTTCTTCGCTGCGCGCGCAGCTTCGGGAACGGGTGATTGGGCGGGGCTTCAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS GCA 90 bp | GCAGCTGTCGCGGGTGGCCACGCAGGGCGAAGGTGGCGGGGGCCTTaGCACCTTCTTCATCGAAGCCTTTTTCTTGGAAGACCTCTTCCG | + |
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Preference number: 5 (lower is better) Translates to: AAVAGGHAGRRWRGP*HLLHRSLFLGRPLP Trigger: CGGAAGAGGTCTTCCAAGAAAAAGGCTTCGATGAAGAAGGTGGCAAGGCCCCCGCCACCTTCGCCCTGCGTGGCCACCCGCGACAGCTGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS TCA 90 bp | TGTCATCTCCAAGCGTCTCCTCGAGTGCCAGGTGGCTGTGGACGGTaGAGAAGCACAGGAAGCCCACTAGGGTGGCCAGGAGTAGGCGGG | + |
|
Preference number: 5 (lower is better) Translates to: CHLQASPRVPGGCGR*RSTGSPLGWPGVGG Trigger: CCCGCCTACTCCTGGCCACCCTAGTGGGCTTCCTGTGCTTCTTCACCGTCCACAGCCACCTGGCACTCGAGGAGACGCTTGGAGATGACA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 ENSMUST00000137333.8 ENSMUST00000148402.8 |
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| CDS-3UTR CAA 90 bp | GACCCGCCCCTCAGCCTAGAAGCGCGGGACCCTGAAGCCCCGCCCAATCACCCGATCTTCTTGGATTTCTaGTTCAGTGCCACGATAGAA | + |
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Preference number: 5 (lower is better) Translates to: DPPLSLEARDPEAPPNHPIFLDF*FSATIE Trigger: TTCTATCGTGGCACTGAACAAGAAATCCAAGAAGAT...CGGGTGATTGGGCGGGGCTTCAGGGTCCCGCGCTTCTAGGCTGAGGGGCGGGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS-3UTR CAA 90 bp | GAAGCCCCGCCCAATCACCCGTTCCCGAAGCTGCGCGCGCAGCGAAGAAGCTGCATCTTCTTGGATTTCTaGTTCAGTGCCACGATAGAA | + |
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Preference number: 5 (lower is better) Translates to: EAPPNHPFPKLRAQRRSCIFLDF*FSATIE Trigger: TTCTATCGTGGCACTGAACAAGAAATCCAAGAAGAT...GCAGCTTCTTCGCTGCGCGCGCAGCTTCGGGAACGGGTGATTGGGCGGGGCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS GCA 90 bp | CTTCTCGGCTTCTTTTCTGCTGATCTTCTTGGATTTCTTGTTCAGTaGCACGATAGAAACAGAGGAGAAATCCAGCGAGTTCATGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: LLGFFSADLLGFLVQ*HDRNRGEIQRVHGG Trigger: TCCTCCATGAACTCGCTGGATTTCTCCTCTGTTTCTATCGTGGCACTGAACAAGAAATCCAAGAAGATCAGCAGAAAAGAAGCCGAGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 ENSMUST00000137333.8 ENSMUST00000148402.8 |
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| CDS CAA 90 bp | CACTGGCAGGAGGCGCACGGGTCGCAGCAGGCGGGTGCGGGTGGCTaGCAGCTGTCGCGGGTGGCCACGCAGGGCGAAGGTGGCGGGGGC | + |
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Preference number: 6 (lower is better) Translates to: HWQEAHGSQQAGAGG*QLSRVATQGEGGGG Trigger: GCCCCCGCCACCTTCGCCCTGCGTGGCCACCCGCGACAGCTGCAAGCCACCCGCACCCGCCTGCTGCGACCCGTGCGCCTCCTGCCAGTG 77% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS CCA 72 bp | GCAGGAGGCGCACGGGTCGCAGCAGGCGGGTGCGGGTaGCTTGCAGCTGTCGCGGGTGGCCACGCAGGGCGA | + |
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Preference number: 6 (lower is better) Translates to: AGGARVAAGGCG*LAAVAGGHAGR Trigger: TCGCCCTGCGTGGCCACCCGCGACAGCTGCAAGCCACCCGCACCCGCCTGCTGCGACCCGTGCGCCTCCTGC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS GCA 72 bp | AGGCGCACGGGTCGCAGCAGGCGGGTGCGGGTGGCTTaGAGCTGTCGCGGGTGGCCACGCAGGGCGAAGGTG | + |
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Preference number: 6 (lower is better) Translates to: RRTGRSRRVRVA*SCRGWPRRAKV Trigger: CACCTTCGCCCTGCGTGGCCACCCGCGACAGCTGCAAGCCACCCGCACCCGCCTGCTGCGACCCGTGCGCCT 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS GCA 72 bp | GCACTGGCAGGAGGCGCACGGGTCGCAGCAGGCGGGTaGGGGTGGCTTGCAGCTGTCGCGGGTGGCCACGCA | + |
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Preference number: 6 (lower is better) Translates to: ALAGGARVAAGG*GWLAAVAGGHA Trigger: TGCGTGGCCACCCGCGACAGCTGCAAGCCACCCGCACCCGCCTGCTGCGACCCGTGCGCCTCCTGCCAGTGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS CCA 72 bp | AGCAGGCGGGTGCGGGTGGCTTGCAGCTGTCGCGGGTaGCCACGCAGGGCGAAGGTGGCGGGGGCCTTGCCA | + |
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Preference number: 6 (lower is better) Translates to: SRRVRVACSCRG*PRRAKVAGALP Trigger: TGGCAAGGCCCCCGCCACCTTCGCCCTGCGTGGCCACCCGCGACAGCTGCAAGCCACCCGCACCCGCCTGCT 75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS CAA 72 bp | GAGGCGCACGGGTCGCAGCAGGCGGGTGCGGGTGGCTaGCAGCTGTCGCGGGTGGCCACGCAGGGCGAAGGT | + |
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Preference number: 6 (lower is better) Translates to: EAHGSQQAGAGG*QLSRVATQGEG Trigger: ACCTTCGCCCTGCGTGGCCACCCGCGACAGCTGCAAGCCACCCGCACCCGCCTGCTGCGACCCGTGCGCCTC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS CCA 72 bp | ACTCGACAGGTGCAGGCGCTGCCGAAGAAACGGCACTaGCAGGAGGCGCACGGGTCGCAGCAGGCGGGTGCG | + |
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Preference number: 6 (lower is better) Translates to: TRQVQALPKKRH*QEAHGSQQAGA Trigger: CGCACCCGCCTGCTGCGACCCGTGCGCCTCCTGCCAGTGCCGTTTCTTCGGCAGCGCCTGCACCTGTCGAGT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS CCA 72 bp | CTTGCAGCTGTCGCGGGTGGCCACGCAGGGCGAAGGTaGCGGGGGCCTTGCCACCTTCTTCATCGAAGCCTT | + |
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Preference number: 6 (lower is better) Translates to: LAAVAGGHAGRR*RGPCHLLHRSL Trigger: AAGGCTTCGATGAAGAAGGTGGCAAGGCCCCCGCCACCTTCGCCCTGCGTGGCCACCCGCGACAGCTGCAAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS CAA 90 bp | TGCAGCTGTCGCGGGTGGCCACGCAGGGCGAAGGTGGCGGGGGCCTaGCCACCTTCTTCATCGAAGCCTTTTTCTTGGAAGACCTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: CSCRGWPRRAKVAGA*PPSSSKPFSWKTSS Trigger: GGAAGAGGTCTTCCAAGAAAAAGGCTTCGATGAAGAAGGTGGCAAGGCCCCCGCCACCTTCGCCCTGCGTGGCCACCCGCGACAGCTGCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS GCA 72 bp | GCGGGTGGCCACGCAGGGCGAAGGTGGCGGGGGCCTTaGCACCTTCTTCATCGAAGCCTTTTTCTTGGAAGA | + |
|
Preference number: 6 (lower is better) Translates to: AGGHAGRRWRGP*HLLHRSLFLGR Trigger: TCTTCCAAGAAAAAGGCTTCGATGAAGAAGGTGGCAAGGCCCCCGCCACCTTCGCCCTGCGTGGCCACCCGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 |
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| CDS GCA 72 bp | CCGCAGACTCCTGTCATCTCCAAGCGTCTCCTCGAGTaGCAGGTGGCTGTGGACGGTGAAGAAGCACAGGAA | + |
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Preference number: 6 (lower is better) Translates to: PQTPVISKRLLE*QVAVDGEEAQE Trigger: TTCCTGTGCTTCTTCACCGTCCACAGCCACCTGGCACTCGAGGAGACGCTTGGAGATGACAGGAGTCTGCGG 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 ENSMUST00000137333.8 ENSMUST00000148402.8 |
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| CDS CAA 90 bp | CTCTTCCGCTTCTCGGCTTCTTTTCTGCTGATCTTCTTGGATTTCTaGTTCAGTGCCACGATAGAAACAGAGGAGAAATCCAGCGAGTTC | + |
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Preference number: 6 (lower is better) Translates to: LFRFSASFLLIFLDF*FSATIETEEKSSEF Trigger: GAACTCGCTGGATTTCTCCTCTGTTTCTATCGTGGCACTGAACAAGAAATCCAAGAAGATCAGCAGAAAAGAAGCCGAGAAGCGGAAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 ENSMUST00000148402.8 |
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| CDS CAA 90 bp | TTGGAAGACCTCTTCCGCTTCTCGGCTTCTTTTCTGCTGATCTTCTaGGATTTCTTGTTCAGTGCCACGATAGAAACAGAGGAGAAATCC | + |
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Preference number: 6 (lower is better) Translates to: LEDLFRFSASFLLIF*DFLFSATIETEEKS Trigger: GGATTTCTCCTCTGTTTCTATCGTGGCACTGAACAAGAAATCCAAGAAGATCAGCAGAAAAGAAGCCGAGAAGCGGAAGAGGTCTTCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 ENSMUST00000148402.8 |
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| CDS CAA 72 bp | CTCTTCCGCTTCTCGGCTTCTTTTCTGCTGATCTTCTaGGATTTCTTGTTCAGTGCCACGATAGAAACAGAG | + |
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Preference number: 6 (lower is better) Translates to: LFRFSASFLLIF*DFLFSATIETE Trigger: CTCTGTTTCTATCGTGGCACTGAACAAGAAATCCAAGAAGATCAGCAGAAAAGAAGCCGAGAAGCGGAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 ENSMUST00000148402.8 |
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| CDS CAA 72 bp | TTCTCGGCTTCTTTTCTGCTGATCTTCTTGGATTTCTaGTTCAGTGCCACGATAGAAACAGAGGAGAAATCC | + |
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Preference number: 6 (lower is better) Translates to: FSASFLLIFLDF*FSATIETEEKS Trigger: GGATTTCTCCTCTGTTTCTATCGTGGCACTGAACAAGAAATCCAAGAAGATCAGCAGAAAAGAAGCCGAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029123.3 ENSMUST00000109697.8 ENSMUST00000137333.8 ENSMUST00000148402.8 |
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