Pregenerated sensors for ZNF880 (Homo sapiens)
Ensembl gene IDs: ENSG00000221923Ensembl transcript IDs: ENST00000424032.6, ENST00000595099.1, ENST00000600321.5
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GATCACCTGAGCTGGGAAGAGCAGTTCTGCCCTCAAAGTCAAGGATaGAGCGACCTAAAACTGCACCACTGCCATCTAGCCTGGGCAGCA | + |
|
Preference number: 1 (lower is better) Translates to: DHLSWEEQFCPQSQG*SDLKLHHCHLAWAA Trigger: TGCTGCCCAGGCTAGATGGCAGTGGTGCAGTTTTAGGTCGCTGCATCCTTGACTTTGAGGGCAGAACTGCTCTTCCCAGCTCAGGTGATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600321.5 |
||
| 3UTR-3UTR GCA 90 bp | GGTGGATCACCTGAGCTGGGAAGAGCAGTTCTGCCCTCAAAGTCAAGGATGCAGCTAAAACTGCACCACTaGCATCTAGCCTGGGCAGCA | + |
|
Preference number: 2 (lower is better) Translates to: GGSPELGRAVLPSKSRMQLKLHH*HLAWAA Trigger: TGCTGCCCAGGCTAGATGGCAGTGGTGCAGTTTTAG...CTGCATCCTTGACTTTGAGGGCAGAACTGCTCTTCCCAGCTCAGGTGATCCACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600321.5 |
||
| 3UTR GCA 72 bp | AGGCGGGTGGATCACCTGAGCTGGGAAGAGCAGTTCTaGCCTCAAAGTCAAGGATGCAGCGACCTAAAACTG | + |
|
Preference number: 3 (lower is better) Translates to: RRVDHLSWEEQF*PQSQGCSDLKL Trigger: CAGTTTTAGGTCGCTGCATCCTTGACTTTGAGGGCAGAACTGCTCTTCCCAGCTCAGGTGATCCACCCGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600321.5 |
||
| 3UTR GCA 72 bp | AGCTGGGAAGAGCAGTTCTGCCCTCAAAGTCAAGGATaGAGCGACCTAAAACTGCACCACTGCCATCTAGCC | + |
|
Preference number: 3 (lower is better) Translates to: SWEEQFCPQSQG*SDLKLHHCHLA Trigger: GGCTAGATGGCAGTGGTGCAGTTTTAGGTCGCTGCATCCTTGACTTTGAGGGCAGAACTGCTCTTCCCAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600321.5 |
||
| CDS-3UTR TCA 90 bp | GGATCACCTGAGCTGGGAAGAGCAGTTCTGCCCTCAAAGTCAAGGATGCAGCGAGTCCACGCCGCAGCATaGCCGTCACTCCACGTAATC | + |
|
Preference number: 4 (lower is better) Translates to: GSPELGRAVLPSKSRMQRVHAAA*PSLHVI Trigger: GATTACGTGGAGTGACGGTCATGCTGCGGCGTGGAC...TCGCTGCATCCTTGACTTTGAGGGCAGAACTGCTCTTCCCAGCTCAGGTGATCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600321.5 |
||
| CDS-3UTR TCA 90 bp | TCACCTGAGCTGGGAAGAGCAGTTCTGCCCTCAAAGTCAAGGATGCAGCGACCTGGCGGGTGGATCACCTaGGCTGGGAAGAGCAGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SPELGRAVLPSKSRMQRPGGWIT*AGKSSS Trigger: AGAACTGCTCTTCCCAGCTCAGGTGATCCACCCGCC...AGGTCGCTGCATCCTTGACTTTGAGGGCAGAACTGCTCTTCCCAGCTCAGGTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600321.5 |
||
| CDS-3UTR CCA 90 bp | GGATCACCTGAGCTGGGAAGAGCAGTTCTGCCCTCAAAGTCAAGGATGCAGCGAGTGGATCACCTGAGCTaGGAAGAGCAGTTCTGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: GSPELGRAVLPSKSRMQRVDHLS*EEQFCP Trigger: AGGGCAGAACTGCTCTTCCCAGCTCAGGTGATCCAC...TCGCTGCATCCTTGACTTTGAGGGCAGAACTGCTCTTCCCAGCTCAGGTGATCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600321.5 |
||
| CDS-3UTR GCA 90 bp | GGATCACCTGAGCTGGGAAGAGCAGTTCTGCCCTCAAAGTCAAGGATGCAGCGACTAAAACTGCACCACTaGCATCTAGCCTGGGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: GSPELGRAVLPSKSRMQRLKLHH*HLAWAA Trigger: TGCTGCCCAGGCTAGATGGCAGTGGTGCAGTTTTAG...TCGCTGCATCCTTGACTTTGAGGGCAGAACTGCTCTTCCCAGCTCAGGTGATCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600321.5 |
||
| CDS-3UTR TCA 90 bp | CACCTGAGCTGGGAAGAGCAGTTCTGCCCTCAAAGTCAAGGATGCAGCGACCTATGCAGAAGAATTGCTTaGATCCAGGAAGCGAAGGTT | + |
|
Preference number: 4 (lower is better) Translates to: HLSWEEQFCPQSQGCSDLCRRIA*IQEAKV Trigger: AACCTTCGCTTCCTGGATTCAAGCAATTCTTCTGCA...TAGGTCGCTGCATCCTTGACTTTGAGGGCAGAACTGCTCTTCCCAGCTCAGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600321.5 |
||
| CDS-3UTR TCA 90 bp | TCTCAAATAATCCAAAATCAAATTACCAGTATAGGCAACAATTCCTCATCTGGGGGTACAAGAATCACTTaGACCTGGGAGACGGAGGTT | + |
|
Preference number: 4 (lower is better) Translates to: SQIIQNQITSIGNNSSSGGTRIT*TWETEV Trigger: AACCTCCGTCTCCCAGGTTCAAGTGATTCTTGTACC...CCCAGATGAGGAATTGTTGCCTATACTGGTAATTTGATTTTGGATTATTTGAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000600321.5 |
||
| CDS-3UTR CAA 90 bp | TCACCTGAGCTGGGAAGAGCAGTTCTGCCCTCAAAGTCAAGGATGCAGCGACCTGCCGAGATCGCGGCATaGCACTCCAGCCTGGGTGAC | + |
|
Preference number: 5 (lower is better) Translates to: SPELGRAVLPSKSRMQRPAEIAA*HSSLGD Trigger: GTCACCCAGGCTGGAGTGCAATGCCGCGATCTCGGC...AGGTCGCTGCATCCTTGACTTTGAGGGCAGAACTGCTCTTCCCAGCTCAGGTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600321.5 |
||
| CDS CCA 90 bp | GTCCAGAGTGGTCTCAAACTCCTGTGCTCAAGGAATTCTCCAGCCTaGGCCTCCGGAGAAGATGGAATTCCAGCCCCGGCCCATAAATAT | + |
|
Preference number: 5 (lower is better) Translates to: VQSGLKLLCSRNSPA*ASGEDGIPAPAHKY Trigger: ATATTTATGGGCCGGGGCTGGAATTCCATCTTCTCCGGAGGCCCAGGCTGGAGAATTCCTTGAGCACAGGAGTTTGAGACCACTCTGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000595099.1 |
||
| CDS CCA 72 bp | GGTCTCAAACTCCTGTGCTCAAGGAATTCTCCAGCCTaGGCCTCCGGAGAAGATGGAATTCCAGCCCCGGCC | + |
|
Preference number: 6 (lower is better) Translates to: GLKLLCSRNSPA*ASGEDGIPAPA Trigger: GGCCGGGGCTGGAATTCCATCTTCTCCGGAGGCCCAGGCTGGAGAATTCCTTGAGCACAGGAGTTTGAGACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000595099.1 |
||
| CDS TCA 72 bp | CCTAGCACTTGGGGAGGCCGATGCAGAAGAATTGCTTaGATCCAGGAAGCGAAGGTTGCAGTGAGCCGAGAT | + |
|
Preference number: 6 (lower is better) Translates to: PSTWGGRCRRIA*IQEAKVAVSRD Trigger: ATCTCGGCTCACTGCAACCTTCGCTTCCTGGATTCAAGCAATTCTTCTGCATCGGCCTCCCCAAGTGCTAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000424032.6 ENST00000600321.5 |
||
| CDS GCA 72 bp | ATGCAGAAGAATTGCTTGAATCCAGGAAGCGAAGGTTaGAGTGAGCCGAGATCGCGGCATTGCACTCCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: MQKNCLNPGSEG*SEPRSRHCTPA Trigger: GGCTGGAGTGCAATGCCGCGATCTCGGCTCACTGCAACCTTCGCTTCCTGGATTCAAGCAATTCTTCTGCAT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000424032.6 ENST00000600321.5 |
||