Pregenerated sensors for ZNF836 (Homo sapiens)
Ensembl gene IDs: ENSG00000196267Ensembl transcript IDs: ENST00000596428.5, ENST00000597065.1, ENST00000597252.5, ENST00000599618.1, ENST00000682614.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AGGGGAGTGGGCATGTCACATGGCAAGAATAGGAGCAAGAGAGAGGAAAGTTCCTCACCCAGGCTGGAGTaGACTGGCACGATCTTGGCT | + |
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Preference number: 2 (lower is better) Translates to: RGVGMSHGKNRSKREESSSPRLE*TGTILA Trigger: AGCCAAGATCGTGCCAGTGCACTCCAGCCTGGGTGA...GGAACTTTCCTCTCTCTTGCTCCTATTCTTGCCATGTGACATGCCCACTCCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000599618.1 |
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| 3UTR-3UTR GCA 90 bp | GTGGGCATGTCACATGGCAAGAATAGGAGCAAGAGAGAGGAAAGTTCCATACACTTGGCTCACTGCAACTaGATTCCAGCCTGGCGACAG | + |
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Preference number: 2 (lower is better) Translates to: VGMSHGKNRSKREESSIHLAHCN*IPAWRQ Trigger: CTGTCGCCAGGCTGGAATGCAGTTGCAGTGAGCCAA...GTGTATGGAACTTTCCTCTCTCTTGCTCCTATTCTTGCCATGTGACATGCCCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000599618.1 |
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| 3UTR-3UTR TCA 90 bp | GTGGGCATGTCACATGGCAAGAATAGGAGCAAGAGAGAGGAAAGTTCCATACACAGAAATCCACCCCTGTaGTCCAATCATCTCCCACCA | + |
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Preference number: 2 (lower is better) Translates to: VGMSHGKNRSKREESSIHRNPPL*SNHLPP Trigger: TGGTGGGAGATGATTGGATCACAGGGGTGGATTTCT...GTGTATGGAACTTTCCTCTCTCTTGCTCCTATTCTTGCCATGTGACATGCCCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000599618.1 |
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| 3UTR CCA 72 bp | CTCACAGTTCTGCAGGCTTTACAGGAAACATGGTGCTaGCATCTGCTCACCTTCCGAGGAAGCCTCAGGAAT | + |
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Preference number: 3 (lower is better) Translates to: LTVLQALQETWC*HLLTFRGSLRN Trigger: ATTCCTGAGGCTTCCTCGGAAGGTGAGCAGATGCCAGCACCATGTTTCCTGTAAAGCCTGCAGAACTGTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000599618.1 |
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| CDS-3UTR GCA 90 bp | AGGGGAGTGGGCATGTCACATGGCAAGAATAGGAGCAAGAGAGAGGAAAGTTCCCATGGTGCTGGCATCTaGTCACCTTCCGAGGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: RGVGMSHGKNRSKREESSHGAGI*SPSEEA Trigger: GGCTTCCTCGGAAGGTGAGCAGATGCCAGCACCATG...GGAACTTTCCTCTCTCTTGCTCCTATTCTTGCCATGTGACATGCCCACTCCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000599618.1 |
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| CDS-3UTR CCA 90 bp | GTGGGCATGTCACATGGCAAGAATAGGAGCAAGAGAGAGGAAAGTTCCATACACCAGGAAACATGGTGCTaGCATCTGCTCACCTTCCGA | + |
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Preference number: 4 (lower is better) Translates to: VGMSHGKNRSKREESSIHQETWC*HLLTFR Trigger: TCGGAAGGTGAGCAGATGCCAGCACCATGTTTCCTG...GTGTATGGAACTTTCCTCTCTCTTGCTCCTATTCTTGCCATGTGACATGCCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000599618.1 |
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| CDS-3UTR GCA 90 bp | ATCTGCTCACCTTCCGAGGAAGCCTCAGGAATGTTAAAATCATGGTGGAAGGAATTACAGGAAACATGGTaGTGGCATCTGCTCACCTTC | + |
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Preference number: 4 (lower is better) Translates to: ICSPSEEASGMLKSWWKELQETW*WHLLTF Trigger: GAAGGTGAGCAGATGCCAGCACCATGTTTCCTGTAA...TTCCTTCCACCATGATTTTAACATTCCTGAGGCTTCCTCGGAAGGTGAGCAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000599618.1 |
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| CDS-3UTR CCA 90 bp | ATCTGCTCACCTTCCGAGGAAGCCTCAGGAATGTTAAAATCATGGTGGAAGGAAAAGGAAAAAGGGGAGTaGGCATGTCACATGGCAAGA | + |
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Preference number: 4 (lower is better) Translates to: ICSPSEEASGMLKSWWKEKEKGE*ACHMAR Trigger: TCTTGCCATGTGACATGCCCACTCCCCTTTTTCCTT...TTCCTTCCACCATGATTTTAACATTCCTGAGGCTTCCTCGGAAGGTGAGCAGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000599618.1 |
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| CDS-3UTR GCA 90 bp | AGGGGAGTGGGCATGTCACATGGCAAGAATAGGAGCAAGAGAGAGGAAAGTTCCTGTTTTAAGACTCTCTaGAGTATGTTTTGTCTGATG | + |
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Preference number: 4 (lower is better) Translates to: RGVGMSHGKNRSKREESSCFKTL*SMFCLM Trigger: CATCAGACAAAACATACTGCAGAGAGTCTTAAAACA...GGAACTTTCCTCTCTCTTGCTCCTATTCTTGCCATGTGACATGCCCACTCCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000599618.1 |
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| CDS-3UTR TCA 90 bp | GTGGGCATGTCACATGGCAAGAATAGGAGCAAGAGAGAGGAAAGTTCCATACACATAAAGAAGTTTAATTaGCTCACAGTTCTGCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: VGMSHGKNRSKREESSIHIKKFN*LTVLQA Trigger: AGCCTGCAGAACTGTGAGTCAATTAAACTTCTTTAT...GTGTATGGAACTTTCCTCTCTCTTGCTCCTATTCTTGCCATGTGACATGCCCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000599618.1 |
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| CDS TCA 72 bp | TGCAGTGAGCGGAGATCATGGCACTGTACTCTAGTCTaGCAGAGCAAGACCTTGGGGCGAAGGGGCTGTTGC | + |
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Preference number: 6 (lower is better) Translates to: CSERRSWHCTLV*QSKTLGRRGCC Trigger: GCAACAGCCCCTTCGCCCCAAGGTCTTGCTCTGTCAGACTAGAGTACAGTGCCATGATCTCCGCTCACTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000597065.1 ENST00000682614.1 |
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| CDS TCA 72 bp | TGCAGTGAGCGGAGATCATGGCACTGTACTCTAGTCTaGCAGAGCAAGACCTTACTTGGGGCGAAGGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: CSERRSWHCTLV*QSKTLLGAKGL Trigger: CAGCCCCTTCGCCCCAAGTAAGGTCTTGCTCTGTCAGACTAGAGTACAGTGCCATGATCTCCGCTCACTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000597252.5 |
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| CDS TCA 72 bp | TGCAGTGAGCGGAGATCATGGCACTGTACTCTAGTCTaGCAGAGCAAGACCCTGTTACACCTCCTTTGTTCC | + |
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Preference number: 6 (lower is better) Translates to: CSERRSWHCTLV*QSKTLLHLLCS Trigger: GGAACAAAGGAGGTGTAACAGGGTCTTGCTCTGTCAGACTAGAGTACAGTGCCATGATCTCCGCTCACTGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000596428.5 |
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