RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZNF829 (Homo sapiens)

Ensembl gene IDs: ENSG00000185869

Ensembl transcript IDs: ENST00000391711.8, ENST00000520907.1, ENST00000520965.5

Found 204 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TATGCTGAAGTCCTAACCCCTGGTACCGGTAAATGTGACCTTACTTaGAAACAGGGTCTTGGCAGATATAATCAAGTTAAGATGAGGTCA +
Preference number: 1 (lower is better)
Translates to: YAEVLTPGTGKCDLT*KQGLGRYNQVKMRS
Trigger: TGACCTCATCTTAACTTGATTATATCTGCCAAGACCCTGTTTCCAAGTAAGGTCACATTTACCGGTACCAGGGGTTAGGACTTCAGCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR CCA 90 bp TGTCTATCTCTTTTCTTAGGTCTAGTAGTATCTGTGTTATGGATCTaGGTGTTGCAGTGTTGGGTGCATACATATTTAGGATTGTTTTAT +
Preference number: 1 (lower is better)
Translates to: CLSLFLGLVVSVLWI*VLQCWVHTYLGLFY
Trigger: ATAAAACAATCCTAAATATGTATGCACCCAACACTGCAACACCCAGATCCATAACACAGATACTACTAGACCTAAGAAAAGAGATAGACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR CCA 90 bp TCAATTTCAATACTCAGTAGTCTGTTGAGGATTCCTATTTCTCCCTaGTTCAATCTTGGAAGGTTATGTGTTTCTAGGAATTTATCCACT +
Preference number: 1 (lower is better)
Translates to: SISILSSLLRIPISP*FNLGRLCVSRNLST
Trigger: AGTGGATAAATTCCTAGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAGACTACTGAGTATTGAAATTGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR TCA 90 bp GCTGAAGTCCTAACCCCTGGTACCGGTAAATGTGACCTTACTTGGAAACAGGGTATAATCAAGTTAAGATaGGGTCACCAGGTAACCCCA +
Preference number: 2 (lower is better)
Translates to: AEVLTPGTGKCDLTWKQGIIKLR*GHQVTP
Trigger: TGGGGTTACCTGGTGACCTCATCTTAACTTGATTAT...ACCCTGTTTCCAAGTAAGGTCACATTTACCGGTACCAGGGGTTAGGACTTCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR TCA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAAAGCTGGAGGTTGCAGTaGGCTGAGATCACACCACTG +
Preference number: 2 (lower is better)
Translates to: ECSMHRREEYIFCGCWVESWRLQ*AEITPL
Trigger: CAGTGGTGTGATCTCAGCTCACTGCAACCTCCAGCT...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR TCA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGGCCTGGCCAACATGGTaGAACCCCGTCGCTACTAAA +
Preference number: 2 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQAWPTW*NPVATK
Trigger: TTTAGTAGCGACGGGGTTTCACCATGTTGGCCAGGC...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR CAA 90 bp GGGTCCATTTGGTGTAGAGTCCAATTTAAGTCCAGAGTTTCTTTGTaGATTTCTGTCCCAGTGATCTGTCTAGTGCTGTCAATGGAGTGG +
Preference number: 2 (lower is better)
Translates to: GSIWCRVQFKSRVSL*ISVPVICLVLSMEW
Trigger: CCACTCCATTGACAGCACTAGACAGATCACTGGGACAGAAATCAACAAAGAAACTCTGGACTTAAATTGGACTCTACACCAAATGGACCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR TCA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAAGGCACAAGAATCGCTTaGACTCAGGAGCTGGAGGTT +
Preference number: 2 (lower is better)
Translates to: ECSMHRREEYIFCGCWVEGTRIA*TQELEV
Trigger: AACCTCCAGCTCCTGAGTTCAAGCGATTCTTGTGCC...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR CAA 90 bp GTTGGGTCCATTTGGTGTAGAGTCCAATTTAAGTCCAGAGTTTCTTaGTTGATTTCTGTCCCAGTGATCTGTCTAGTGCTGTCAATGGAG +
Preference number: 2 (lower is better)
Translates to: VGSIWCRVQFKSRVS*LISVPVICLVLSME
Trigger: CTCCATTGACAGCACTAGACAGATCACTGGGACAGAAATCAACAAAGAAACTCTGGACTTAAATTGGACTCTACACCAAATGGACCCAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR GCA 90 bp CTGTTGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGAAGGTTATGTGTTTCTTGGAATGCCAAGGACTaGCAGCTGTTAACAGAGGTT +
Preference number: 2 (lower is better)
Translates to: LLRIPISPWFNLGRLCVSWNAKD*QLLTEV
Trigger: AACCTCTGTTAACAGCTGGCAGTCCTTGGCATTCCA...AGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR CCA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAATTTTGGCCATCACGGTaGCTCACGTCTGTAATCCCA +
Preference number: 2 (lower is better)
Translates to: ECSMHRREEYIFCGCWVEFWPSR*LTSVIP
Trigger: TGGGATTACAGACGTGAGCCACCGTGATGGCCAAAA...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR TCA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGACCAGGCTCTAAACTATaGGAGAATAAATTTCTCTTG +
Preference number: 2 (lower is better)
Translates to: RSSESSEGTKTISTLEFRPGSKL*ENKFLL
Trigger: CAAGAGAAATTTATTCTCTCATAGTTTAGAGCCTGG...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR GCA 90 bp CTGTTGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGAAGGTTATGTGTTTCTGATACACAGCGAGAATaGAATGTGAAGATGGAGGCA +
Preference number: 2 (lower is better)
Translates to: LLRIPISPWFNLGRLCVSDTQRE*NVKMEA
Trigger: TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATC...AGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR GCA 90 bp TACACCCATTTTCTGTTCCCACCTACCACACTAAATTCTTGTGATCTTTCTACTCACATTCAAGCAATTTaGTCTGTTGCCCAGGCTGGA +
Preference number: 2 (lower is better)
Translates to: YTHFLFPPTTLNSCDLSTHIQAI*SVAQAG
Trigger: TCCAGCCTGGGCAACAGAGCAAATTGCTTGAATGTG...AGTAGAAAGATCACAAGAATTTAGTGTGGTAGGTGGGAACAGAAAATGGGTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR CCA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGTCTGTGTTATGGATCTaGGTGTTGCAGTGTTGGGTG +
Preference number: 2 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQSVLWI*VLQCWV
Trigger: CACCCAACACTGCAACACCCAGATCCATAACACAGA...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR TCA 90 bp TACACCCATTTTCTGTTCCCACCTACCACACTAAATTCTTGTGATCTTTCTACTCCTAAAAAGATATGCTaGAGTCCTAACCCCTGGTAC +
Preference number: 2 (lower is better)
Translates to: YTHFLFPPTTLNSCDLSTPKKIC*SPNPWY
Trigger: GTACCAGGGGTTAGGACTTCAGCATATCTTTTTAGG...AGTAGAAAGATCACAAGAATTTAGTGTGGTAGGTGGGAACAGAAAATGGGTGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR CCA 90 bp CTGTTGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGAAGGTTATGTGTTTCTGATGGAGGCAGAGATTaGAATGGTGTATGTAAAAGC +
Preference number: 2 (lower is better)
Translates to: LLRIPISPWFNLGRLCVSDGGRD*NGVCKS
Trigger: GCTTTTACATACACCATTCCAATCTCTGCCTCCATC...AGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR CAA 90 bp TTGAGAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTaGTTGGGTAGAATGTTCTTCAGATGTCTGTTGGGTCCATTTGGT +
Preference number: 2 (lower is better)
Translates to: LRMFHAQKRRVYILW*LGRMFFRCLLGPFG
Trigger: ACCAAATGGACCCAACAGACATCTGAAGAACATTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTCTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR TCA 90 bp TACACCCATTTTCTGTTCCCACCTACCACACTAAATTCTTGTGATCTTTCTACTGCTTCAGTATCAGGATaGTACTGGCTTTGTAGAATG +
Preference number: 2 (lower is better)
Translates to: YTHFLFPPTTLNSCDLSTASVSG*YWLCRM
Trigger: CATTCTACAAAGCCAGTATCATCCTGATACTGAAGC...AGTAGAAAGATCACAAGAATTTAGTGTGGTAGGTGGGAACAGAAAATGGGTGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR CCA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAATGGGTGTTGCAGTGTTaGGTGCATACATATTTAGGA +
Preference number: 2 (lower is better)
Translates to: ECSMHRREEYIFCGCWVEWVLQC*VHTYLG
Trigger: TCCTAAATATGTATGCACCCAACACTGCAACACCCA...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR TCA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCAATAATCAAGTTAAGATaGGGTCACCAGGTAACCCCA +
Preference number: 2 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPIIKLR*GHQVTP
Trigger: TGGGGTTACCTGGTGACCTCATCTTAACTTGATTAT...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR GCA 90 bp CTGTTGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGAAGGTTATGTGTTTCTTTATTGCTTTTCTTCTaGCAGCTTTGGGTTGAGTTT +
Preference number: 2 (lower is better)
Translates to: LLRIPISPWFNLGRLCVSLLLFF*QLWVEF
Trigger: AAACTCAACCCAAAGCTGGCAGAAGAAAAGCAATAA...AGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR CCA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCATGGGTGTTGCAGTGTTaGGTGCATACATATTTAGGA +
Preference number: 2 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPWVLQC*VHTYLG
Trigger: TCCTAAATATGTATGCACCCAACACTGCAACACCCA...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR CCA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAATCTGTTGGGTCCATTTaGTGTAGAGTCCAATTTAAG +
Preference number: 2 (lower is better)
Translates to: ECSMHRREEYIFCGCWVESVGSI*CRVQFK
Trigger: CTTAAATTGGACTCTACACCAAATGGACCCAACAGA...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR CCA 90 bp TACACCCATTTTCTGTTCCCACCTACCACACTAAATTCTTGTGATCTTTCTACTACAGGTGTGAGTGCCTaGCTTATTTTTAATTCTGTG +
Preference number: 2 (lower is better)
Translates to: YTHFLFPPTTLNSCDLSTTGVSA*LIFNSV
Trigger: CACAGAATTAAAAATAAGCCAGGCACTCACACCTGT...AGTAGAAAGATCACAAGAATTTAGTGTGGTAGGTGGGAACAGAAAATGGGTGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR TCA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGCCAGGCTCTAAACTATaGGAGAATAAATTTCTCTTG +
Preference number: 2 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQPGSKL*ENKFLL
Trigger: CAAGAGAAATTTATTCTCTCATAGTTTAGAGCCTGG...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR GCA 90 bp CTGTTGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGAAGGTTATGTGTTTCTTTTGAGAATGTTCCATaGACAGAAGAGAAGAGTATA +
Preference number: 2 (lower is better)
Translates to: LLRIPISPWFNLGRLCVSFENVP*TEEKSI
Trigger: TATACTCTTCTCTTCTGTGCATGGAACATTCTCAAA...AGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR CCA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCATCTGTTGGGTCCATTTaGTGTAGAGTCCAATTTAAG +
Preference number: 2 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPSVGSI*CRVQFK
Trigger: CTTAAATTGGACTCTACACCAAATGGACCCAACAGA...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR CCA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGATATTCTGTGGTTGTTaGGTAGAATGTTCTTCAGAT +
Preference number: 2 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQIFCGC*VECSSD
Trigger: ATCTGAAGAACATTCTACCCAACAACCACAGAATAT...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR CCA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCAATATTCTGTGGTTGTTaGGTAGAATGTTCTTCAGAT +
Preference number: 2 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPIFCGC*VECSSD
Trigger: ATCTGAAGAACATTCTACCCAACAACCACAGAATAT...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR TCA 72 bp GGTTTCGCCATGTCAGCCAGACTGGTCTCAAACTCTTaGCATCATGTGATCTGCCCGCCTTGGCCTTGCAAA +
Preference number: 3 (lower is better)
Translates to: GFAMSARLVSNS*HHVICPPWPCK
Trigger: TTTGCAAGGCCAAGGCGGGCAGATCACATGATGTCAAGAGTTTGAGACCAGTCTGGCTGACATGGCGAAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR TCA 72 bp GTCCCAGTGATCTGTCTAGTGCTGTCAATGGAGTGGTaGAGTCCCCTGCTATTGTTGTATTGCTGTCTATCT +
Preference number: 3 (lower is better)
Translates to: VPVICLVLSMEW*SPLLLLYCCLS
Trigger: AGATAGACAGCAATACAACAATAGCAGGGGACTTCACCACTCCATTGACAGCACTAGACAGATCACTGGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR CAA 90 bp TACACCCATTTTCTGTTCCCACCTACCACACTAAATTCTTGTGATCTTTCTACTCCACATTCAAGCAATTaGCTCTGTTGCCCAGGCTGG +
Preference number: 3 (lower is better)
Translates to: YTHFLFPPTTLNSCDLSTPHSSN*LCCPGW
Trigger: CCAGCCTGGGCAACAGAGCAAATTGCTTGAATGTGG...AGTAGAAAGATCACAAGAATTTAGTGTGGTAGGTGGGAACAGAAAATGGGTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR CCA 72 bp GTCCTAACCCCTGGTACCGGTAAATGTGACCTTACTTaGAAACAGGGTCTTGGCAGATATAATCAAGTTAAG +
Preference number: 3 (lower is better)
Translates to: VLTPGTGKCDLT*KQGLGRYNQVK
Trigger: CTTAACTTGATTATATCTGCCAAGACCCTGTTTCCAAGTAAGGTCACATTTACCGGTACCAGGGGTTAGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR CAA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCAAGGCACAAGAATCGCTaGAACTCAGGAGCTGGAGGT +
Preference number: 3 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPRHKNR*NSGAGG
Trigger: ACCTCCAGCTCCTGAGTTCAAGCGATTCTTGTGCCT...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR CAA 90 bp CTGTTGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGAAGGTTATGTGTTTCTAAGTCCAGAGTTTCTTaGTTGATTTCTGTCCCAGTG +
Preference number: 3 (lower is better)
Translates to: LLRIPISPWFNLGRLCVSKSRVS*LISVPV
Trigger: CACTGGGACAGAAATCAACAAAGAAACTCTGGACTT...AGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR CAA 90 bp TACACCCATTTTCTGTTCCCACCTACCACACTAAATTCTTGTGATCTTTCTACTGTAGTGGGGAAAGTGTaGGCTTTTAATGGACTCATT +
Preference number: 3 (lower is better)
Translates to: YTHFLFPPTTLNSCDLSTVVGKV*AFNGLI
Trigger: AATGAGTCCATTAAAAGCCAACACTTTCCCCACTAC...AGTAGAAAGATCACAAGAATTTAGTGTGGTAGGTGGGAACAGAAAATGGGTGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR CCA 72 bp ATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTaGGTAGAATGTTCTTCAGATGTCTGTTGGGTCCAT +
Preference number: 3 (lower is better)
Translates to: MHRREEYIFCGC*VECSSDVCWVH
Trigger: ATGGACCCAACAGACATCTGAAGAACATTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR CAA 90 bp CTGTTGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGAAGGTTATGTGTTTCTTATATTCTGTGGTTGTaGGGTAGAATGTTCTTCAGA +
Preference number: 3 (lower is better)
Translates to: LLRIPISPWFNLGRLCVSYILWL*GRMFFR
Trigger: TCTGAAGAACATTCTACCCAACAACCACAGAATATA...AGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR CAA 90 bp TACACCCATTTTCTGTTCCCACCTACCACACTAAATTCTTGTGATCTTTCTACTGAATCATGTATTGAGTaGCATATGTTGAGCCATCCT +
Preference number: 3 (lower is better)
Translates to: YTHFLFPPTTLNSCDLSTESCIE*HMLSHP
Trigger: AGGATGGCTCAACATATGCAACTCAATACATGATTC...AGTAGAAAGATCACAAGAATTTAGTGTGGTAGGTGGGAACAGAAAATGGGTGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR CCA 72 bp ATACTCAGTAGTCTGTTGAGGATTCCTATTTCTCCCTaGTTCAATCTTGGAAGGTTATGTGTTTCTAGGAAT +
Preference number: 3 (lower is better)
Translates to: ILSSLLRIPISP*FNLGRLCVSRN
Trigger: ATTCCTAGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAGACTACTGAGTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR CAA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGTATATTCTGTGGTTGTaGGGTAGAATGTTCTTCAGA +
Preference number: 3 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQYILWL*GRMFFR
Trigger: TCTGAAGAACATTCTACCCAACAACCACAGAATATA...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR-3UTR CAA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCAGTATATGACCTATTTTaGAGAATGTTCCATGCACAG +
Preference number: 3 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPVYDLF*RMFHAQ
Trigger: CTGTGCATGGAACATTCTCAAAAATAGGTCATATAC...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR TCA 72 bp CTATTACTGATTCAATTTCAATACTCAGTAGTCTGTTaGGGATTCCTATTTCTCCCTGGTTCAATCTTGGAA +
Preference number: 3 (lower is better)
Translates to: LLLIQFQYSVVC*GFLFLPGSILE
Trigger: TTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAGACTACTGAGTATTGAAATTGAATCAGTAATAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR CAA 72 bp GGGTTTCGCCATGTCAGCCAGACTGGTCTCAAACTCTaGACATCATGTGATCTGCCCGCCTTGGCCTTGCAA +
Preference number: 4 (lower is better)
Translates to: GFRHVSQTGLKL*TSCDLPALALQ
Trigger: TTGCAAGGCCAAGGCGGGCAGATCACATGATGTCAAGAGTTTGAGACCAGTCTGGCTGACATGGCGAAACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp GCTGAAGTCCTAACCCCTGGTACCGGTAAATGTGACCTTACTTGGAAACAGGGTTTCCTGCGAGAAAAGTaGCAGGCCACCAGGCCCTCT +
Preference number: 4 (lower is better)
Translates to: AEVLTPGTGKCDLTWKQGFLREK*QATRPS
Trigger: AGAGGGCCTGGTGGCCTGCCACTTTTCTCGCAGGAA...ACCCTGTTTCCAAGTAAGGTCACATTTACCGGTACCAGGGGTTAGGACTTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000391711.8
CDS-3UTR GCA 90 bp GCTGAAGTCCTAACCCCTGGTACCGGTAAATGTGACCTTACTTGGAAACAGGGTCCCACCCGAAACGGCTaGTCCCTCAACTCTCAACAT +
Preference number: 4 (lower is better)
Translates to: AEVLTPGTGKCDLTWKQGPTRNG*SLNSQH
Trigger: ATGTTGAGAGTTGAGGGAGCAGCCGTTTCGGGTGGG...ACCCTGTTTCCAAGTAAGGTCACATTTACCGGTACCAGGGGTTAGGACTTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000391711.8
CDS-3UTR TCA 90 bp GCTGAAGTCCTAACCCCTGGTACCGGTAAATGTGACCTTACTTGGAAACAGGGTTCCAGGGTTGGAATCTaGCCAGACCTCAGAGAGGTT +
Preference number: 4 (lower is better)
Translates to: AEVLTPGTGKCDLTWKQGSRVGI*PDLREV
Trigger: AACCTCTCTGAGGTCTGGTCAGATTCCAACCCTGGA...ACCCTGTTTCCAAGTAAGGTCACATTTACCGGTACCAGGGGTTAGGACTTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp GCTGAAGTCCTAACCCCTGGTACCGGTAAATGTGACCTTACTTGGAAACAGGGTTTCCCTCATGGCGAATaGGGTCAGAGCGACTACCAA +
Preference number: 4 (lower is better)
Translates to: AEVLTPGTGKCDLTWKQGFPHGE*GQSDYQ
Trigger: TTGGTAGTCGCTCTGACCTCATTCGCCATGAGGGAA...ACCCTGTTTCCAAGTAAGGTCACATTTACCGGTACCAGGGGTTAGGACTTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGAATGGTCTCGATCTCTTaGCCTCGTGATCCTCCTGCC +
Preference number: 4 (lower is better)
Translates to: RSSESSEGTKTISTLEFRMVSIS*PRDPPA
Trigger: GGCAGGAGGATCACGAGGTCAAGAGATCGAGACCAT...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000520965.5
CDS-3UTR CCA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGACCGGCTGGAGTGCAATaGCATAATCTCGGCTCACTG +
Preference number: 4 (lower is better)
Translates to: RSSESSEGTKTISTLEFRPAGVQ*HNLGSL
Trigger: CAGTGAGCCGAGATTATGCCATTGCACTCCAGCCGG...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp GCTGAAGTCCTAACCCCTGGTACCGGTAAATGTGACCTTACTTGGAAACAGGGTCTGAGCCAGTTCTCCTaGGGACCAAAATATCTCACC +
Preference number: 4 (lower is better)
Translates to: AEVLTPGTGKCDLTWKQGLSQFS*GPKYLT
Trigger: GGTGAGATATTTTGGTCCCCAGGAGAACTGGCTCAG...ACCCTGTTTCCAAGTAAGGTCACATTTACCGGTACCAGGGGTTAGGACTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000520965.5
CDS-3UTR CCA 90 bp GCTGAAGTCCTAACCCCTGGTACCGGTAAATGTGACCTTACTTGGAAACAGGGTGAGAGGTTTCCATGTTaGCCAGGATGGTCTCGATCT +
Preference number: 4 (lower is better)
Translates to: AEVLTPGTGKCDLTWKQGERFPC*PGWSRS
Trigger: AGATCGAGACCATCCTGGCCAACATGGAAACCTCTC...ACCCTGTTTCCAAGTAAGGTCACATTTACCGGTACCAGGGGTTAGGACTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000520965.5
CDS-3UTR TCA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGATCCAGGGTTGGAATCTaGCCAGACCTCAGAGAGGTT +
Preference number: 4 (lower is better)
Translates to: RSSESSEGTKTISTLEFRSRVGI*PDLREV
Trigger: AACCTCTCTGAGGTCTGGTCAGATTCCAACCCTGGA...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp GCTGAAGTCCTAACCCCTGGTACCGGTAAATGTGACCTTACTTGGAAACAGGGTTGGAATGCCAAGGACTaGCAGCTGTTAACAGAGGTT +
Preference number: 4 (lower is better)
Translates to: AEVLTPGTGKCDLTWKQGWNAKD*QLLTEV
Trigger: AACCTCTGTTAACAGCTGGCAGTCCTTGGCATTCCA...ACCCTGTTTCCAAGTAAGGTCACATTTACCGGTACCAGGGGTTAGGACTTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp ATAAAAGACATACACAGAGATACACAGCGAGAATGCAATGTGAAGATGGAGGCAGGAGTCTGGCTTTGTTaGTCCCCCGGCTGGAGTGCA +
Preference number: 4 (lower is better)
Translates to: IKDIHRDTQRECNVKMEAGVWLC*SPGWSA
Trigger: TGCACTCCAGCCGGGGGAGCAACAAAGCCAGACTCC...TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATCTCTGTGTATGTCTTTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCATGTCAGCTCCTCGCCTaGGCCCACCCGAAACGGCTG +
Preference number: 4 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPCQLLA*AHPKRL
Trigger: CAGCCGTTTCGGGTGGGCCCAGGCGAGGAGCTGACA...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000391711.8
CDS-3UTR TCA 90 bp GCTGAAGTCCTAACCCCTGGTACCGGTAAATGTGACCTTACTTGGAAACAGGGTGTCATTCAACCAGTATaGATTCCCTCATGGCGAATG +
Preference number: 4 (lower is better)
Translates to: AEVLTPGTGKCDLTWKQGVIQPV*IPSWRM
Trigger: CATTCGCCATGAGGGAATTCATACTGGTTGAATGAC...ACCCTGTTTCCAAGTAAGGTCACATTTACCGGTACCAGGGGTTAGGACTTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGAAGTAGAATTCAGCTGTaGATCTGTCTGGTCCTGGGC +
Preference number: 4 (lower is better)
Translates to: RSSESSEGTKTISTLEFRSRIQL*ICLVLG
Trigger: GCCCAGGACCAGACAGATTCACAGCTGAATTCTACT...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGACTGGTCTCAAACTCTTaGCATCATGTGATCTGCCCG +
Preference number: 4 (lower is better)
Translates to: RSSESSEGTKTISTLEFRLVSNS*HHVICP
Trigger: CGGGCAGATCACATGATGTCAAGAGTTTGAGACCAG...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGACTTGGCCTTGCAAAGTaGTGGGATTACAGGTGTGAG +
Preference number: 4 (lower is better)
Translates to: RSSESSEGTKTISTLEFRLGLAK*WDYRCE
Trigger: CTCACACCTGTAATCCCAGCACTTTGCAAGGCCAAG...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp CTGTTGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGAAGGTTATGTGTTTCTCTCCCCCGGCTGGAGTaGAATGGCATAATCTCGGCT +
Preference number: 4 (lower is better)
Translates to: LLRIPISPWFNLGRLCVSLPRLE*NGIISA
Trigger: AGCCGAGATTATGCCATTGCACTCCAGCCGGGGGAG...AGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp TACACCCATTTTCTGTTCCCACCTACCACACTAAATTCTTGTGATCTTTCTACTGGAGTCTGGCTTTGTTaGTCCCCCGGCTGGAGTGCA +
Preference number: 4 (lower is better)
Translates to: YTHFLFPPTTLNSCDLSTGVWLC*SPGWSA
Trigger: TGCACTCCAGCCGGGGGAGCAACAAAGCCAGACTCC...AGTAGAAAGATCACAAGAATTTAGTGTGGTAGGTGGGAACAGAAAATGGGTGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGATTTTGGCCATCACGGTaGCTCACGTCTGTAATCCCA +
Preference number: 4 (lower is better)
Translates to: RSSESSEGTKTISTLEFRFWPSR*LTSVIP
Trigger: TGGGATTACAGACGTGAGCCACCGTGATGGCCAAAA...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAAGGGTCCCGCCAGGAGTaGCGAAACGTTCGAATTCCT +
Preference number: 4 (lower is better)
Translates to: ECSMHRREEYIFCGCWVEGSRQE*RNVRIP
Trigger: AGGAATTCGAACGTTTCGTCACTCCTGGCGGGACCC...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000391711.8
CDS-3UTR TCA 90 bp CTGTTGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGAAGGTTATGTGTTTCTCTATGGAAACATCCCTaGACATCACCGGCCCCTTGG +
Preference number: 4 (lower is better)
Translates to: LLRIPISPWFNLGRLCVSLWKHP*TSPAPW
Trigger: CCAAGGGGCCGGTGATGTTCAGGGATGTTTCCATAG...AGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp CTGTTGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGAAGGTTATGTGTTTCTAGCTGGAGGTTGCAGTaGGCTGAGATCACACCACTG +
Preference number: 4 (lower is better)
Translates to: LLRIPISPWFNLGRLCVSSWRLQ*AEITPL
Trigger: CAGTGGTGTGATCTCAGCTCACTGCAACCTCCAGCT...AGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCAGGGAACTTGCAGACCTaGGCCAGTTCTCCTGGGGAC +
Preference number: 4 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPGNLQT*ASSPGD
Trigger: GTCCCCAGGAGAACTGGCTCAGGTCTGCAAGTTCCC...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000520965.5
CDS-3UTR GCA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGACAGTGCCTGCCACCATaGCCAGCCAATTTTTCTATT +
Preference number: 4 (lower is better)
Translates to: RSSESSEGTKTISTLEFRQCLPP*PANFSI
Trigger: AATAGAAAAATTGGCTGGGCATGGTGGCAGGCACTG...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp ATAAAAGACATACACAGAGATACACAGCGAGAATGCAATGTGAAGATGGAGGCATGGGACTACAGTGCCTaGCACCATGCCCAGCCAATT +
Preference number: 4 (lower is better)
Translates to: IKDIHRDTQRECNVKMEAWDYSA*HHAQPI
Trigger: AATTGGCTGGGCATGGTGGCAGGCACTGTAGTCCCA...TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATCTCTGTGTATGTCTTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGCTCCCCCGGCTGGAGTaGAATGGCATAATCTCGGCT +
Preference number: 4 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQLPRLE*NGIISA
Trigger: AGCCGAGATTATGCCATTGCACTCCAGCCGGGGGAG...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp CTGTTGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGAAGGTTATGTGTTTCTTCCCGGATGGGAACTTaGAGACCTGAGCCAGTTCTC +
Preference number: 4 (lower is better)
Translates to: LLRIPISPWFNLGRLCVSSRMGT*RPEPVL
Trigger: GAGAACTGGCTCAGGTCTGCAAGTTCCCATCCGGGA...AGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520965.5
CDS-3UTR CCA 90 bp GCTGAAGTCCTAACCCCTGGTACCGGTAAATGTGACCTTACTTGGAAACAGGGTTGGGTGTTGCAGTGTTaGGTGCATACATATTTAGGA +
Preference number: 4 (lower is better)
Translates to: AEVLTPGTGKCDLTWKQGWVLQC*VHTYLG
Trigger: TCCTAAATATGTATGCACCCAACACTGCAACACCCA...ACCCTGTTTCCAAGTAAGGTCACATTTACCGGTACCAGGGGTTAGGACTTCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp CTGTTGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGAAGGTTATGTGTTTCTTTCCCTCATGGCGAATaGGGTCAGAGCGACTACCAA +
Preference number: 4 (lower is better)
Translates to: LLRIPISPWFNLGRLCVSFPHGE*GQSDYQ
Trigger: TTGGTAGTCGCTCTGACCTCATTCGCCATGAGGGAA...AGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp CTGTTGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGAAGGTTATGTGTTTCTGGCACAAGAATCGCTTaGACTCAGGAGCTGGAGGTT +
Preference number: 4 (lower is better)
Translates to: LLRIPISPWFNLGRLCVSGTRIA*TQELEV
Trigger: AACCTCCAGCTCCTGAGTTCAAGCGATTCTTGTGCC...AGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAAGCCTGGCCAACATGGTaGAACCCCGTCGCTACTAAA +
Preference number: 4 (lower is better)
Translates to: ECSMHRREEYIFCGCWVEAWPTW*NPVATK
Trigger: TTTAGTAGCGACGGGGTTTCACCATGTTGGCCAGGC...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAATGGGACTACAGTGCCTaGCACCATGCCCAGCCAATT +
Preference number: 4 (lower is better)
Translates to: ECSMHRREEYIFCGCWVEWDYSA*HHAQPI
Trigger: AATTGGCTGGGCATGGTGGCAGGCACTGTAGTCCCA...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp GCTGAAGTCCTAACCCCTGGTACCGGTAAATGTGACCTTACTTGGAAACAGGGTTCTGTTGGGTCCATTTaGTGTAGAGTCCAATTTAAG +
Preference number: 4 (lower is better)
Translates to: AEVLTPGTGKCDLTWKQGSVGSI*CRVQFK
Trigger: CTTAAATTGGACTCTACACCAAATGGACCCAACAGA...ACCCTGTTTCCAAGTAAGGTCACATTTACCGGTACCAGGGGTTAGGACTTCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp TACACCCATTTTCTGTTCCCACCTACCACACTAAATTCTTGTGATCTTTCTACTCCGGCTGGAGTGCAATaGCATAATCTCGGCTCACTG +
Preference number: 4 (lower is better)
Translates to: YTHFLFPPTTLNSCDLSTPAGVQ*HNLGSL
Trigger: CAGTGAGCCGAGATTATGCCATTGCACTCCAGCCGG...AGTAGAAAGATCACAAGAATTTAGTGTGGTAGGTGGGAACAGAAAATGGGTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGTCCAGTCATCCCGGATaGGAACTTGCAGACCTGAGC +
Preference number: 4 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQSSHPG*ELADLS
Trigger: GCTCAGGTCTGCAAGTTCCCATCCGGGATGACTGGA...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000520965.5
CDS-3UTR TCA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCACTATGGAAACATCCCTaGACATCACCGGCCCCTTGG +
Preference number: 4 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPLWKHP*TSPAPW
Trigger: CCAAGGGGCCGGTGATGTTCAGGGATGTTTCCATAG...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp GCTGAAGTCCTAACCCCTGGTACCGGTAAATGTGACCTTACTTGGAAACAGGGTTTATTGCTTTTCTTCTaGCAGCTTTGGGTTGAGTTT +
Preference number: 4 (lower is better)
Translates to: AEVLTPGTGKCDLTWKQGLLLFF*QLWVEF
Trigger: AAACTCAACCCAAAGCTGGCAGAAGAAAAGCAATAA...ACCCTGTTTCCAAGTAAGGTCACATTTACCGGTACCAGGGGTTAGGACTTCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGTTGCCCAGGCTGGAGTaGAATGGCACTATCTCAGCT +
Preference number: 4 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQLPRLE*NGTISA
Trigger: AGCTGAGATAGTGCCATTGCACTCCAGCCTGGGCAA...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGAGAATCTGTCTGGTCCTaGGCTTTTTGTTTTTGCAAG +
Preference number: 4 (lower is better)
Translates to: RSSESSEGTKTISTLEFRESVWS*AFCFCK
Trigger: CTTGCAAAAACAAAAAGCCCAGGACCAGACAGATTC...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGAATGCTGAATAAGCCTTaGGTGTTGAGTAAAGGCTTT +
Preference number: 4 (lower is better)
Translates to: RSSESSEGTKTISTLEFRMLNKP*VLSKGF
Trigger: AAAGCCTTTACTCAACACTCAAGGCTTATTCAGCAT...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGAATGGTTAGTAAGTGTTaGGGCACTATTAAAGGCCTT +
Preference number: 4 (lower is better)
Translates to: RSSESSEGTKTISTLEFRMVSKC*GTIKGL
Trigger: AAGGCCTTTAATAGTGCCTCAACACTTACTAACCAT...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp CCCTTGAGTTTAGATTTCCAGGCTCTAAACTATGAGAGAATAAATTTCTCTTGTGCCTGGCCAACATGGTaGAACCCCGTCGCTACTAAA +
Preference number: 4 (lower is better)
Translates to: PLSLDFQALNYERINFSCAWPTW*NPVATK
Trigger: TTTAGTAGCGACGGGGTTTCACCATGTTGGCCAGGC...ACAAGAGAAATTTATTCTCTCATAGTTTAGAGCCTGGAAATCTAAACTCAAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAACTGGTCTCAAACTCTTaGCATCATGTGATCTGCCCG +
Preference number: 4 (lower is better)
Translates to: ECSMHRREEYIFCGCWVELVSNS*HHVICP
Trigger: CGGGCAGATCACATGATGTCAAGAGTTTGAGACCAG...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp ATAAAAGACATACACAGAGATACACAGCGAGAATGCAATGTGAAGATGGAGGCAAAACGTTCGAATTCCTaGGAGAAAAGTGGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: IKDIHRDTQRECNVKMEAKRSNS*EKSGRP
Trigger: TGGCCTGCCACTTTTCTCGCAGGAATTCGAACGTTT...TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATCTCTGTGTATGTCTTTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000391711.8
CDS-3UTR GCA 90 bp GCTGAAGTCCTAACCCCTGGTACCGGTAAATGTGACCTTACTTGGAAACAGGGTTTACTAGTTCTTCCTTaGATGTCTAGTAGAATTCAG +
Preference number: 4 (lower is better)
Translates to: AEVLTPGTGKCDLTWKQGLLVLP*MSSRIQ
Trigger: CTGAATTCTACTAGACATGCAAGGAAGAACTAGTAA...ACCCTGTTTCCAAGTAAGGTCACATTTACCGGTACCAGGGGTTAGGACTTCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCATTGCCCAGGCTGGAGTaGAATGGCACTATCTCAGCT +
Preference number: 4 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPLPRLE*NGTISA
Trigger: AGCTGAGATAGTGCCATTGCACTCCAGCCTGGGCAA...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAATCTGTCCAATTCCAGTaGCTCAGGGGAAAGGTTGTG +
Preference number: 4 (lower is better)
Translates to: ECSMHRREEYIFCGCWVESVQFQ*LRGKVV
Trigger: CACAACCTTTCCCCTGAGCCACTGGAATTGGACAGA...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp ATAAAAGACATACACAGAGATACACAGCGAGAATGCAATGTGAAGATGGAGGCAGAGATCAGAGGAGAATaGGGCATTCTGTCCAATTCC +
Preference number: 4 (lower is better)
Translates to: IKDIHRDTQRECNVKMEAEIRGE*GILSNS
Trigger: GGAATTGGACAGAATGCCCCATTCTCCTCTGATCTC...TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATCTCTGTGTATGTCTTTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp TACACCCATTTTCTGTTCCCACCTACCACACTAAATTCTTGTGATCTTTCTACTATGTCGAGTAACGAGTaGGCCACGACTAAAGGACTT +
Preference number: 4 (lower is better)
Translates to: YTHFLFPPTTLNSCDLSTMSSNE*ATTKGL
Trigger: AAGTCCTTTAGTCGTGGCTCACTCGTTACTCGACAT...AGTAGAAAGATCACAAGAATTTAGTGTGGTAGGTGGGAACAGAAAATGGGTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp CTGTTGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGAAGGTTATGTGTTTCTCCTAAAAAGATATGCTaGAGTCCTAACCCCTGGTAC +
Preference number: 4 (lower is better)
Translates to: LLRIPISPWFNLGRLCVSPKKIC*SPNPWY
Trigger: GTACCAGGGGTTAGGACTTCAGCATATCTTTTTAGG...AGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCAAGTAGAATTCAGCTGTaGATCTGTCTGGTCCTGGGC +
Preference number: 4 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPSRIQL*ICLVLG
Trigger: GCCCAGGACCAGACAGATTCACAGCTGAATTCTACT...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp TACACCCATTTTCTGTTCCCACCTACCACACTAAATTCTTGTGATCTTTCTACTACTGGCTTTGTAGAATaGGTTAGGGAGGATTCCCTC +
Preference number: 4 (lower is better)
Translates to: YTHFLFPPTTLNSCDLSTTGFVE*VREDSL
Trigger: GAGGGAATCCTCCCTAACTCATTCTACAAAGCCAGT...AGTAGAAAGATCACAAGAATTTAGTGTGGTAGGTGGGAACAGAAAATGGGTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGACTGGCTTTGTAGAATaGGTTAGGGAGGATTCCCTC +
Preference number: 4 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQTGFVE*VREDSL
Trigger: GAGGGAATCCTCCCTAACTCATTCTACAAAGCCAGT...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGATGTAGAAGTTCATCATaGATTCTTTCCTCCTCTTCT +
Preference number: 4 (lower is better)
Translates to: RSSESSEGTKTISTLEFRCRSSS*ILSSSS
Trigger: AGAAGAGGAGGAAAGAATGCATGATGAACTTCTACA...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGTGGAATGCCAAGGACTaGCAGCTGTTAACAGAGGTT +
Preference number: 4 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQWNAKD*QLLTEV
Trigger: AACCTCTGTTAACAGCTGGCAGTCCTTGGCATTCCA...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp ATAAAAGACATACACAGAGATACACAGCGAGAATGCAATGTGAAGATGGAGGCAGATACACAGCGAGAATaGAATGTGAAGATGGAGGCA +
Preference number: 4 (lower is better)
Translates to: IKDIHRDTQRECNVKMEADTQRE*NVKMEA
Trigger: TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATC...TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATCTCTGTGTATGTCTTTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGCAGTGCCTGCCACCATaGCCAGCCAATTTTTCTATT +
Preference number: 4 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQQCLPP*PANFSI
Trigger: AATAGAAAAATTGGCTGGGCATGGTGGCAGGCACTG...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp TACACCCATTTTCTGTTCCCACCTACCACACTAAATTCTTGTGATCTTTCTACTACCACACATGAGGAATaGAGATCAGAGGAGAATGGG +
Preference number: 4 (lower is better)
Translates to: YTHFLFPPTTLNSCDLSTTTHEE*RSEENG
Trigger: CCCATTCTCCTCTGATCTCCATTCCTCATGTGTGGT...AGTAGAAAGATCACAAGAATTTAGTGTGGTAGGTGGGAACAGAAAATGGGTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp TACACCCATTTTCTGTTCCCACCTACCACACTAAATTCTTGTGATCTTTCTACTACATCACCGGCCCCTTaGATACTGCTTGTAGAAGTT +
Preference number: 4 (lower is better)
Translates to: YTHFLFPPTTLNSCDLSTTSPAP*ILLVEV
Trigger: AACTTCTACAAGCAGTATCCAAGGGGCCGGTGATGT...AGTAGAAAGATCACAAGAATTTAGTGTGGTAGGTGGGAACAGAAAATGGGTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCATTTTGGCCATCACGGTaGCTCACGTCTGTAATCCCA +
Preference number: 4 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPFWPSR*LTSVIP
Trigger: TGGGATTACAGACGTGAGCCACCGTGATGGCCAAAA...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp TACACCCATTTTCTGTTCCCACCTACCACACTAAATTCTTGTGATCTTTCTACTTCTGTGTTATGGATCTaGGTGTTGCAGTGTTGGGTG +
Preference number: 4 (lower is better)
Translates to: YTHFLFPPTTLNSCDLSTSVLWI*VLQCWV
Trigger: CACCCAACACTGCAACACCCAGATCCATAACACAGA...AGTAGAAAGATCACAAGAATTTAGTGTGGTAGGTGGGAACAGAAAATGGGTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGATTCTTCTGCCAGCTTTaGGTTGAGTTTGTTTTGTTT +
Preference number: 4 (lower is better)
Translates to: RSSESSEGTKTISTLEFRFFCQL*VEFVLF
Trigger: AAACAAAACAAACTCAACCCAAAGCTGGCAGAAGAA...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGAATTCCTATTTCTCCCTaGTTCAATCTTGGAAGGTTA +
Preference number: 4 (lower is better)
Translates to: RSSESSEGTKTISTLEFRIPISP*FNLGRL
Trigger: TAACCTTCCAAGATTGAACCAGGGAGAAATAGGAAT...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR CAA 72 bp TGGTGTAGAGTCCAATTTAAGTCCAGAGTTTCTTTGTaGATTTCTGTCCCAGTGATCTGTCTAGTGCTGTCA +
Preference number: 4 (lower is better)
Translates to: WCRVQFKSRVSL*ISVPVICLVLS
Trigger: TGACAGCACTAGACAGATCACTGGGACAGAAATCAACAAAGAAACTCTGGACTTAAATTGGACTCTACACCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp ATAAAAGACATACACAGAGATACACAGCGAGAATGCAATGTGAAGATGGAGGCAATTGGAAAGTCCCACTaGAACCAGGTTGCTGAAATT +
Preference number: 4 (lower is better)
Translates to: IKDIHRDTQRECNVKMEAIGKSH*NQVAEI
Trigger: AATTTCAGCAACCTGGTTTCAGTGGGACTTTCCAAT...TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATCTCTGTGTATGTCTTTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGGTCATTCAACCAGTATaGATTCCCTCATGGCGAATG +
Preference number: 4 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQVIQPV*IPSWRM
Trigger: CATTCGCCATGAGGGAATTCATACTGGTTGAATGAC...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp ATAAAAGACATACACAGAGATACACAGCGAGAATGCAATGTGAAGATGGAGGCAATAATCAAGTTAAGATaGGGTCACCAGGTAACCCCA +
Preference number: 4 (lower is better)
Translates to: IKDIHRDTQRECNVKMEAIIKLR*GHQVTP
Trigger: TGGGGTTACCTGGTGACCTCATCTTAACTTGATTAT...TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATCTCTGTGTATGTCTTTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp ATAAAAGACATACACAGAGATACACAGCGAGAATGCAATGTGAAGATGGAGGCACAGGGTATTATGGGTTaGACTGTATCCCCTAAAAAG +
Preference number: 4 (lower is better)
Translates to: IKDIHRDTQRECNVKMEAQGIMG*TVSPKK
Trigger: CTTTTTAGGGGATACAGTTCAACCCATAATACCCTG...TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATCTCTGTGTATGTCTTTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp ATAAAAGACATACACAGAGATACACAGCGAGAATGCAATGTGAAGATGGAGGCAGCTTCAGTATCAGGATaGTACTGGCTTTGTAGAATG +
Preference number: 4 (lower is better)
Translates to: IKDIHRDTQRECNVKMEAASVSG*YWLCRM
Trigger: CATTCTACAAAGCCAGTATCATCCTGATACTGAAGC...TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATCTCTGTGTATGTCTTTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp CTGTTGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGAAGGTTATGTGTTTCTGCTTCAGTATCAGGATaGTACTGGCTTTGTAGAATG +
Preference number: 4 (lower is better)
Translates to: LLRIPISPWFNLGRLCVSASVSG*YWLCRM
Trigger: CATTCTACAAAGCCAGTATCATCCTGATACTGAAGC...AGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGAAAGGTTGTGTTCACTaGTGTCCAGGGTTGGAATCT +
Preference number: 4 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQKGCVH*CPGLES
Trigger: AGATTCCAACCCTGGACAGCAGTGAACACAACCTTT...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp TACACCCATTTTCTGTTCCCACCTACCACACTAAATTCTTGTGATCTTTCTACTGATACACAGCGAGAATaGAATGTGAAGATGGAGGCA +
Preference number: 4 (lower is better)
Translates to: YTHFLFPPTTLNSCDLSTDTQRE*NVKMEA
Trigger: TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATC...AGTAGAAAGATCACAAGAATTTAGTGTGGTAGGTGGGAACAGAAAATGGGTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp ATAAAAGACATACACAGAGATACACAGCGAGAATGCAATGTGAAGATGGAGGCATGGGTGTTGCAGTGTTaGGTGCATACATATTTAGGA +
Preference number: 4 (lower is better)
Translates to: IKDIHRDTQRECNVKMEAWVLQC*VHTYLG
Trigger: TCCTAAATATGTATGCACCCAACACTGCAACACCCA...TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATCTCTGTGTATGTCTTTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGAATATTCTGTGGTTGTTaGGTAGAATGTTCTTCAGAT +
Preference number: 4 (lower is better)
Translates to: RSSESSEGTKTISTLEFRIFCGC*VECSSD
Trigger: ATCTGAAGAACATTCTACCCAACAACCACAGAATAT...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGAAGAGTATATATTCTGTaGTTGTTGGGTAGAATGTTC +
Preference number: 4 (lower is better)
Translates to: RSSESSEGTKTISTLEFRRVYIL*LLGRMF
Trigger: GAACATTCTACCCAACAACCACAGAATATATACTCT...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp ATAAAAGACATACACAGAGATACACAGCGAGAATGCAATGTGAAGATGGAGGCAATGCTGAATAAGCCTTaGGTGTTGAGTAAAGGCTTT +
Preference number: 4 (lower is better)
Translates to: IKDIHRDTQRECNVKMEAMLNKP*VLSKGF
Trigger: AAAGCCTTTACTCAACACTCAAGGCTTATTCAGCAT...TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATCTCTGTGTATGTCTTTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGATAATCAAGTTAAGATaGGGTCACCAGGTAACCCCA +
Preference number: 4 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQIIKLR*GHQVTP
Trigger: TGGGGTTACCTGGTGACCTCATCTTAACTTGATTAT...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCACCTAAAAAGATATGCTaGAGTCCTAACCCCTGGTAC +
Preference number: 4 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPPKKIC*SPNPWY
Trigger: GTACCAGGGGTTAGGACTTCAGCATATCTTTTTAGG...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCAAAAGGTTGTGTTCACTaGTGTCCAGGGTTGGAATCT +
Preference number: 4 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPKGCVH*CPGLES
Trigger: AGATTCCAACCCTGGACAGCAGTGAACACAACCTTT...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp CCCTTGAGTTTAGATTTCCAGGCTCTAAACTATGAGAGAATAAATTTCTCTTGTCACATTCAAGCAATTTaGTCTGTTGCCCAGGCTGGA +
Preference number: 4 (lower is better)
Translates to: PLSLDFQALNYERINFSCHIQAI*SVAQAG
Trigger: TCCAGCCTGGGCAACAGAGCAAATTGCTTGAATGTG...ACAAGAGAAATTTATTCTCTCATAGTTTAGAGCCTGGAAATCTAAACTCAAGGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp CCCTTGAGTTTAGATTTCCAGGCTCTAAACTATGAGAGAATAAATTTCTCTTGTGAGATCAGAGGAGAATaGGGCATTCTGTCCAATTCC +
Preference number: 4 (lower is better)
Translates to: PLSLDFQALNYERINFSCEIRGE*GILSNS
Trigger: GGAATTGGACAGAATGCCCCATTCTCCTCTGATCTC...ACAAGAGAAATTTATTCTCTCATAGTTTAGAGCCTGGAAATCTAAACTCAAGGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp CCCTTGAGTTTAGATTTCCAGGCTCTAAACTATGAGAGAATAAATTTCTCTTGTACCACACATGAGGAATaGAGATCAGAGGAGAATGGG +
Preference number: 4 (lower is better)
Translates to: PLSLDFQALNYERINFSCTTHEE*RSEENG
Trigger: CCCATTCTCCTCTGATCTCCATTCCTCATGTGTGGT...ACAAGAGAAATTTATTCTCTCATAGTTTAGAGCCTGGAAATCTAAACTCAAGGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp CCCTTGAGTTTAGATTTCCAGGCTCTAAACTATGAGAGAATAAATTTCTCTTGTACATCACCGGCCCCTTaGATACTGCTTGTAGAAGTT +
Preference number: 4 (lower is better)
Translates to: PLSLDFQALNYERINFSCTSPAP*ILLVEV
Trigger: AACTTCTACAAGCAGTATCCAAGGGGCCGGTGATGT...ACAAGAGAAATTTATTCTCTCATAGTTTAGAGCCTGGAAATCTAAACTCAAGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAAGATGGAGGCAGAGATTaGAATGGTGTATGTAAAAGC +
Preference number: 4 (lower is better)
Translates to: ECSMHRREEYIFCGCWVEDGGRD*NGVCKS
Trigger: GCTTTTACATACACCATTCCAATCTCTGCCTCCATC...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAAGAATCTGTCTGGTCCTaGGCTTTTTGTTTTTGCAAG +
Preference number: 4 (lower is better)
Translates to: ECSMHRREEYIFCGCWVEESVWS*AFCFCK
Trigger: CTTGCAAAAACAAAAAGCCCAGGACCAGACAGATTC...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAAAGCTGTGAATCTGTCTaGTCCTGGGCTTTTTGTTTT +
Preference number: 4 (lower is better)
Translates to: ECSMHRREEYIFCGCWVESCESV*SWAFCF
Trigger: AAAACAAAAAGCCCAGGACCAGACAGATTCACAGCT...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGAGCTGTGAATCTGTCTaGTCCTGGGCTTTTTGTTTT +
Preference number: 4 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQSCESV*SWAFCF
Trigger: AAAACAAAAAGCCCAGGACCAGACAGATTCACAGCT...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp ATAAAAGACATACACAGAGATACACAGCGAGAATGCAATGTGAAGATGGAGGCAACAGGTGTGAGTGCCTaGCTTATTTTTAATTCTGTG +
Preference number: 4 (lower is better)
Translates to: IKDIHRDTQRECNVKMEATGVSA*LIFNSV
Trigger: CACAGAATTAAAAATAAGCCAGGCACTCACACCTGT...TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATCTCTGTGTATGTCTTTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR CAA 72 bp ATTTGGTGTAGAGTCCAATTTAAGTCCAGAGTTTCTTaGTTGATTTCTGTCCCAGTGATCTGTCTAGTGCTG +
Preference number: 4 (lower is better)
Translates to: IWCRVQFKSRVS*LISVPVICLVL
Trigger: CAGCACTAGACAGATCACTGGGACAGAAATCAACAAAGAAACTCTGGACTTAAATTGGACTCTACACCAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCATTGTATAAATTCATCTaGTCAGCGTCCAGGCATTCC +
Preference number: 4 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPLYKFI*SASRHS
Trigger: GGAATGCCTGGACGCTGATCAGATGAATTTATACAA...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp CTGTTGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGAAGGTTATGTGTTTCTCCAGGCTCTAAACTATaGGAGAATAAATTTCTCTTG +
Preference number: 4 (lower is better)
Translates to: LLRIPISPWFNLGRLCVSPGSKL*ENKFLL
Trigger: CAAGAGAAATTTATTCTCTCATAGTTTAGAGCCTGG...AGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCACAGGGTATTATGGGTTaGACTGTATCCCCTAAAAAG +
Preference number: 4 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPQGIMG*TVSPKK
Trigger: CTTTTTAGGGGATACAGTTCAACCCATAATACCCTG...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAATTTTTCCTAGTTCCTTaGGATGTGACGTTAGGCTAT +
Preference number: 4 (lower is better)
Translates to: ECSMHRREEYIFCGCWVEFFLVP*DVTLGY
Trigger: ATAGCCTAACGTCACATCTCAAGGAACTAGGAAAAA...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp CTGTTGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGAAGGTTATGTGTTTCTGGAATAAAATCCACTTaGCTGTGCTGTTACTATCTT +
Preference number: 4 (lower is better)
Translates to: LLRIPISPWFNLGRLCVSGIKST*LCCYYL
Trigger: AAGATAGTAACAGCACAGTCAAGTGGATTTTATTCC...AGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp ATAAAAGACATACACAGAGATACACAGCGAGAATGCAATGTGAAGATGGAGGCAGGAATAAAATCCACTTaGCTGTGCTGTTACTATCTT +
Preference number: 4 (lower is better)
Translates to: IKDIHRDTQRECNVKMEAGIKST*LCCYYL
Trigger: AAGATAGTAACAGCACAGTCAAGTGGATTTTATTCC...TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATCTCTGTGTATGTCTTTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGGTGATCTTTCTACTCTaGACTCTGAAATCCACAGTA +
Preference number: 4 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQVIFLL*TLKSTV
Trigger: TACTGTGGATTTCAGAGTGCAGAGTAGAAAGATCAC...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp CTGTTGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGAAGGTTATGTGTTTCTATTCCTATTTCTCCCTaGTTCAATCTTGGAAGGTTA +
Preference number: 4 (lower is better)
Translates to: LLRIPISPWFNLGRLCVSIPISP*FNLGRL
Trigger: TAACCTTCCAAGATTGAACCAGGGAGAAATAGGAAT...AGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp CCCTTGAGTTTAGATTTCCAGGCTCTAAACTATGAGAGAATAAATTTCTCTTGTTTGTATAAATTCATCTaGTCAGCGTCCAGGCATTCC +
Preference number: 4 (lower is better)
Translates to: PLSLDFQALNYERINFSCLYKFI*SASRHS
Trigger: GGAATGCCTGGACGCTGATCAGATGAATTTATACAA...ACAAGAGAAATTTATTCTCTCATAGTTTAGAGCCTGGAAATCTAAACTCAAGGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp CCCTTGAGTTTAGATTTCCAGGCTCTAAACTATGAGAGAATAAATTTCTCTTGTATTGGAAAGTCCCACTaGAACCAGGTTGCTGAAATT +
Preference number: 4 (lower is better)
Translates to: PLSLDFQALNYERINFSCIGKSH*NQVAEI
Trigger: AATTTCAGCAACCTGGTTTCAGTGGGACTTTCCAAT...ACAAGAGAAATTTATTCTCTCATAGTTTAGAGCCTGGAAATCTAAACTCAAGGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGTTCTTCTGCCAGCTTTaGGTTGAGTTTGTTTTGTTT +
Preference number: 4 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQFFCQL*VEFVLF
Trigger: AAACAAAACAAACTCAACCCAAAGCTGGCAGAAGAA...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR TCA 90 bp CCCTTGAGTTTAGATTTCCAGGCTCTAAACTATGAGAGAATAAATTTCTCTTGTATGGTTAGTAAGTGTTaGGGCACTATTAAAGGCCTT +
Preference number: 4 (lower is better)
Translates to: PLSLDFQALNYERINFSCMVSKC*GTIKGL
Trigger: AAGGCCTTTAATAGTGCCTCAACACTTACTAACCAT...ACAAGAGAAATTTATTCTCTCATAGTTTAGAGCCTGGAAATCTAAACTCAAGGG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp TACACCCATTTTCTGTTCCCACCTACCACACTAAATTCTTGTGATCTTTCTACTTTTGAGAATGTTCCATaGACAGAAGAGAAGAGTATA +
Preference number: 4 (lower is better)
Translates to: YTHFLFPPTTLNSCDLSTFENVP*TEEKSI
Trigger: TATACTCTTCTCTTCTGTGCATGGAACATTCTCAAA...AGTAGAAAGATCACAAGAATTTAGTGTGGTAGGTGGGAACAGAAAATGGGTGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAATTTGAGAATGTTCCATaGACAGAAGAGAAGAGTATA +
Preference number: 4 (lower is better)
Translates to: ECSMHRREEYIFCGCWVEFENVP*TEEKSI
Trigger: TATACTCTTCTCTTCTGTGCATGGAACATTCTCAAA...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCATTATTGCTTTTCTTCTaGCAGCTTTGGGTTGAGTTT +
Preference number: 4 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPLLLFF*QLWVEF
Trigger: AAACTCAACCCAAAGCTGGCAGAAGAAAAGCAATAA...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp CCCTTGAGTTTAGATTTCCAGGCTCTAAACTATGAGAGAATAAATTTCTCTTGTGTGATCTTTCTACTCTaGACTCTGAAATCCACAGTA +
Preference number: 4 (lower is better)
Translates to: PLSLDFQALNYERINFSCVIFLL*TLKSTV
Trigger: TACTGTGGATTTCAGAGTGCAGAGTAGAAAGATCAC...ACAAGAGAAATTTATTCTCTCATAGTTTAGAGCCTGGAAATCTAAACTCAAGGG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CCA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAAAGAGTATATATTCTGTaGTTGTTGGGTAGAATGTTC +
Preference number: 4 (lower is better)
Translates to: ECSMHRREEYIFCGCWVERVYIL*LLGRMF
Trigger: GAACATTCTACCCAACAACCACAGAATATATACTCT...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR GCA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCATTACTAGTTCTTCCTTaGATGTCTAGTAGAATTCAG +
Preference number: 4 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPLLVLP*MSSRIQ
Trigger: CTGAATTCTACTAGACATGCAAGGAAGAACTAGTAA...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
3UTR CAA 72 bp TCTATTACTGATTCAATTTCAATACTCAGTAGTCTGTaGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGA +
Preference number: 4 (lower is better)
Translates to: SITDSISILSSL*RIPISPWFNLG
Trigger: TCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAGACTACTGAGTATTGAAATTGAATCAGTAATAGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS GCA 90 bp ACGCCGATTCCTGTCAGCTCCTCGCCTGGGCCCACCCGAAACGGCTaGTCCCTCAACTCTCAACATCCAGCCGAGCCTCGGAGTTGCGGG +
Preference number: 5 (lower is better)
Translates to: TPIPVSSSPGPTRNG*SLNSQHPAEPRSCG
Trigger: CCCGCAACTCCGAGGCTCGGCTGGATGTTGAGAGTTGAGGGAGCAGCCGTTTCGGGTGGGCCCAGGCGAGGAGCTGACAGGAATCGGCGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520907.1
CDS CCA 90 bp GTAGTCCAGAGCGGGACCCACGCCGATTCCTGTCAGCTCCTCGCCTaGGCCCACCCGAAACGGCTGCTCCCTCAACTCTCAACATCCAGC +
Preference number: 5 (lower is better)
Translates to: VVQSGTHADSCQLLA*AHPKRLLPQLSTSS
Trigger: GCTGGATGTTGAGAGTTGAGGGAGCAGCCGTTTCGGGTGGGCCCAGGCGAGGAGCTGACAGGAATCGGCGTGGGTCCCGCTCTGGACTAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520907.1
CDS GCA 90 bp CCAGATCTAAGGGTCCCGCCAGGAGTGACGAAACGTTCGAATTCCTaGGAGAAAAGTGGCAGGCCACCAGGCCCTCTGGGAAATGTAGTC +
Preference number: 5 (lower is better)
Translates to: PDLRVPPGVTKRSNS*EKSGRPPGPLGNVV
Trigger: GACTACATTTCCCAGAGGGCCTGGTGGCCTGCCACTTTTCTCGCAGGAATTCGAACGTTTCGTCACTCCTGGCGGGACCCTTAGATCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520907.1
CDS TCA 90 bp GGCTCAGGGGAAAGGTTGTGTTCACTGCTGTCCAGGGTTGGAATCTaGCCAGACCTCAGAGAGGTTTCCATGTTGGCCAGGATGGTCTCG +
Preference number: 5 (lower is better)
Translates to: GSGERLCSLLSRVGI*PDLREVSMLARMVS
Trigger: CGAGACCATCCTGGCCAACATGGAAACCTCTCTGAGGTCTGGTCAGATTCCAACCCTGGACAGCAGTGAACACAACCTTTCCCCTGAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000520965.5
CDS GCA 90 bp CGGTATCCTCACCTAAGCCCTTTCCAGTCATCCCGGATGGGAACTTaGAGACCTGAGCCAGTTCTCCTGGGGACCAAAATATCTCACCTC +
Preference number: 5 (lower is better)
Translates to: RYPHLSPFQSSRMGT*RPEPVLLGTKISHL
Trigger: GAGGTGAGATATTTTGGTCCCCAGGAGAACTGGCTCAGGTCTGCAAGTTCCCATCCGGGATGACTGGAAAGGGCTTAGGTGAGGATACCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000520965.5
CDS TCA 90 bp TCACCTAAGCCCTTTCCAGTCATCCCGGATGGGAACTTGCAGACCTaGGCCAGTTCTCCTGGGGACCAAAATATCTCACCTCCCAGATCT +
Preference number: 5 (lower is better)
Translates to: SPKPFPVIPDGNLQT*ASSPGDQNISPPRS
Trigger: AGATCTGGGAGGTGAGATATTTTGGTCCCCAGGAGAACTGGCTCAGGTCTGCAAGTTCCCATCCGGGATGACTGGAAAGGGCTTAGGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000520965.5
CDS GCA 90 bp GCATTCTGTCCAATTCCAGTGGCTCAGGGGAAAGGTTGTGTTCACTaGTGTCCAGGGTTGGAATCTGACCAGACCTCAGAGAGGTTTCCT +
Preference number: 5 (lower is better)
Translates to: AFCPIPVAQGKGCVH*CPGLESDQTSERFP
Trigger: AGGAAACCTCTCTGAGGTCTGGTCAGATTCCAACCCTGGACAGCAGTGAACACAACCTTTCCCCTGAGCCACTGGAATTGGACAGAATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520907.1
CDS GCA 90 bp GCATTCTGTCCAATTCCAGTGGCTCAGGGGAAAGGTTGTGTTCACTaGTGTCCAGGGTTGGAATCTGACCAGACCTCAGAGAGGTTTCCA +
Preference number: 5 (lower is better)
Translates to: AFCPIPVAQGKGCVH*CPGLESDQTSERFP
Trigger: TGGAAACCTCTCTGAGGTCTGGTCAGATTCCAACCCTGGACAGCAGTGAACACAACCTTTCCCCTGAGCCACTGGAATTGGACAGAATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000520965.5
CDS-3UTR CAA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAAAGCCGAGCCTCGGAGTaGCGGGTCGCCGTAGCGCTG +
Preference number: 5 (lower is better)
Translates to: ECSMHRREEYIFCGCWVESRASE*RVAVAL
Trigger: CAGCGCTACGGCGACCCGCAACTCCGAGGCTCGGCT...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000391711.8
CDS-3UTR CAA 90 bp GCTGAAGTCCTAACCCCTGGTACCGGTAAATGTGACCTTACTTGGAAACAGGGTCACTGCTGTCCAGGGTaGGAATCTGACCAGACCTCA +
Preference number: 5 (lower is better)
Translates to: AEVLTPGTGKCDLTWKQGHCCPG*ESDQTS
Trigger: TGAGGTCTGGTCAGATTCCAACCCTGGACAGCAGTG...ACCCTGTTTCCAAGTAAGGTCACATTTACCGGTACCAGGGGTTAGGACTTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGAAGGCACAAGAATCGCTaGAACTCAGGAGCTGGAGGT +
Preference number: 5 (lower is better)
Translates to: RSSESSEGTKTISTLEFRRHKNR*NSGAGG
Trigger: ACCTCCAGCTCCTGAGTTCAAGCGATTCTTGTGCCT...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGACCACATTCAAGCAATTaGCTCTGTTGCCCAGGCTGG +
Preference number: 5 (lower is better)
Translates to: RSSESSEGTKTISTLEFRPHSSN*LCCPGW
Trigger: CCAGCCTGGGCAACAGAGCAAATTGCTTGAATGTGG...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGAAACATCACCGGCCCCTaGGATACTGCTTGTAGAAGT +
Preference number: 5 (lower is better)
Translates to: RSSESSEGTKTISTLEFRNITGP*DTACRS
Trigger: ACTTCTACAAGCAGTATCCAAGGGGCCGGTGATGTT...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp GCTGAAGTCCTAACCCCTGGTACCGGTAAATGTGACCTTACTTGGAAACAGGGTTCCAGAGTTTCTTTGTaGATTTCTGTCCCAGTGATC +
Preference number: 5 (lower is better)
Translates to: AEVLTPGTGKCDLTWKQGSRVSL*ISVPVI
Trigger: GATCACTGGGACAGAAATCAACAAAGAAACTCTGGA...ACCCTGTTTCCAAGTAAGGTCACATTTACCGGTACCAGGGGTTAGGACTTCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp TACACCCATTTTCTGTTCCCACCTACCACACTAAATTCTTGTGATCTTTCTACTCACTGCTGTCCAGGGTaGGAATCTGACCAGACCTCA +
Preference number: 5 (lower is better)
Translates to: YTHFLFPPTTLNSCDLSTHCCPG*ESDQTS
Trigger: TGAGGTCTGGTCAGATTCCAACCCTGGACAGCAGTG...AGTAGAAAGATCACAAGAATTTAGTGTGGTAGGTGGGAACAGAAAATGGGTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGCCACATTCAAGCAATTaGCTCTGTTGCCCAGGCTGG +
Preference number: 5 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQPHSSN*LCCPGW
Trigger: CCAGCCTGGGCAACAGAGCAAATTGCTTGAATGTGG...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGAGAGAGGTTTCCATGTaGGCCAGGATGGTCTCGATC +
Preference number: 5 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQREVSM*ARMVSI
Trigger: GATCGAGACCATCCTGGCCAACATGGAAACCTCTCT...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000520965.5
CDS-3UTR CAA 90 bp ATAAAAGACATACACAGAGATACACAGCGAGAATGCAATGTGAAGATGGAGGCAACAGCTGGCTTAGAATaGGAAAGTCCCACTGAAACC +
Preference number: 5 (lower is better)
Translates to: IKDIHRDTQRECNVKMEATAGLE*ESPTET
Trigger: GGTTTCAGTGGGACTTTCCAATTCTAAGCCAGCTGT...TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATCTCTGTGTATGTCTTTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGAGAATCATGTATTGAGTaGCATATGTTGAGCCATCCT +
Preference number: 5 (lower is better)
Translates to: RSSESSEGTKTISTLEFRESCIE*HMLSHP
Trigger: AGGATGGCTCAACATATGCAACTCAATACATGATTC...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp TACACCCATTTTCTGTTCCCACCTACCACACTAAATTCTTGTGATCTTTCTACTACAGCTGGCTTAGAATaGGAAAGTCCCACTGAAACC +
Preference number: 5 (lower is better)
Translates to: YTHFLFPPTTLNSCDLSTTAGLE*ESPTET
Trigger: GGTTTCAGTGGGACTTTCCAATTCTAAGCCAGCTGT...AGTAGAAAGATCACAAGAATTTAGTGTGGTAGGTGGGAACAGAAAATGGGTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGAGTATATATTCTGTGGTaGTTGGGTAGAATGTTCTTC +
Preference number: 5 (lower is better)
Translates to: RSSESSEGTKTISTLEFRVYILW*LGRMFF
Trigger: GAAGAACATTCTACCCAACAACCACAGAATATATAC...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp AGATCCTCAGAGTCCTCAGAAGGAACCAAAACGATCAGCACCCTTGAGTTTAGATTCTCAGTCTCATTTTaGCCTGCTCTGATATTTGTT +
Preference number: 5 (lower is better)
Translates to: RSSESSEGTKTISTLEFRFSVSF*PALIFV
Trigger: AACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA...TCTAAACTCAAGGGTGCTGATCGTTTTGGTTCCTTCTGAGGACTCTGAGGATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp ATAAAAGACATACACAGAGATACACAGCGAGAATGCAATGTGAAGATGGAGGCAATTGAGTTGCATATGTaGAGCCATCCTTACACCCCA +
Preference number: 5 (lower is better)
Translates to: IKDIHRDTQRECNVKMEAIELHM*SHPYTP
Trigger: TGGGGTGTAAGGATGGCTCAACATATGCAACTCAAT...TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATCTCTGTGTATGTCTTTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp CCCTTGAGTTTAGATTTCCAGGCTCTAAACTATGAGAGAATAAATTTCTCTTGTAACATCACCGGCCCCTaGGATACTGCTTGTAGAAGT +
Preference number: 5 (lower is better)
Translates to: PLSLDFQALNYERINFSCNITGP*DTACRS
Trigger: ACTTCTACAAGCAGTATCCAAGGGGCCGGTGATGTT...ACAAGAGAAATTTATTCTCTCATAGTTTAGAGCCTGGAAATCTAAACTCAAGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCACTGGGTGTTGCAGTGTaGGGTGCATACATATTTAGG +
Preference number: 5 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPLGVAV*GAYIFR
Trigger: CCTAAATATGTATGCACCCAACACTGCAACACCCAG...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp ATAAAAGACATACACAGAGATACACAGCGAGAATGCAATGTGAAGATGGAGGCAAAGTCCAGAGTTTCTTaGTTGATTTCTGTCCCAGTG +
Preference number: 5 (lower is better)
Translates to: IKDIHRDTQRECNVKMEAKSRVS*LISVPV
Trigger: CACTGGGACAGAAATCAACAAAGAAACTCTGGACTT...TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATCTCTGTGTATGTCTTTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp CCCTTGAGTTTAGATTTCCAGGCTCTAAACTATGAGAGAATAAATTTCTCTTGTCTGGGTGTTGCAGTGTaGGGTGCATACATATTTAGG +
Preference number: 5 (lower is better)
Translates to: PLSLDFQALNYERINFSCLGVAV*GAYIFR
Trigger: CCTAAATATGTATGCACCCAACACTGCAACACCCAG...ACAAGAGAAATTTATTCTCTCATAGTTTAGAGCCTGGAAATCTAAACTCAAGGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAATCCAGAGTTTCTTTGTaGATTTCTGTCCCAGTGATC +
Preference number: 5 (lower is better)
Translates to: ECSMHRREEYIFCGCWVESRVSL*ISVPVI
Trigger: GATCACTGGGACAGAAATCAACAAAGAAACTCTGGA...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp CTGTTGAGGATTCCTATTTCTCCCTGGTTCAATCTTGGAAGGTTATGTGTTTCTCTCTTAGCACTGCTTTaGCTGTATCTCAGATGTTTT +
Preference number: 5 (lower is better)
Translates to: LLRIPISPWFNLGRLCVSLLALL*LYLRCF
Trigger: AAAACATCTGAGATACAGCAAAAGCAGTGCTAAGAG...AGAAACACATAACCTTCCAAGATTGAACCAGGGAGAAATAGGAATCCTCAACAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCAATTGAGTTGCATATGTaGAGCCATCCTTACACCCCA +
Preference number: 5 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPIELHM*SHPYTP
Trigger: TGGGGTGTAAGGATGGCTCAACATATGCAACTCAAT...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAAGTAGTGGGGAAAGTGTaGGCTTTTAATGGACTCATT +
Preference number: 5 (lower is better)
Translates to: ECSMHRREEYIFCGCWVEVVGKV*AFNGLI
Trigger: AATGAGTCCATTAAAAGCCAACACTTTCCCCACTAC...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp ATAAAAGACATACACAGAGATACACAGCGAGAATGCAATGTGAAGATGGAGGCAGTATATATTCTGTGGTaGTTGGGTAGAATGTTCTTC +
Preference number: 5 (lower is better)
Translates to: IKDIHRDTQRECNVKMEAVYILW*LGRMFF
Trigger: GAAGAACATTCTACCCAACAACCACAGAATATATAC...TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATCTCTGTGTATGTCTTTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp ATAAAAGACATACACAGAGATACACAGCGAGAATGCAATGTGAAGATGGAGGCAAGGAATAAAATCCACTaGACTGTGCTGTTACTATCT +
Preference number: 5 (lower is better)
Translates to: IKDIHRDTQRECNVKMEARNKIH*TVLLLS
Trigger: AGATAGTAACAGCACAGTCAAGTGGATTTTATTCCT...TGCCTCCATCTTCACATTGCATTCTCGCTGTGTATCTCTGTGTATGTCTTTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp TACTTGCTTTGTGGTCCAGTATATGACCTATTTTTGAGAATGTTCCATGCACAGGAATCATGTATTGAGTaGCATATGTTGAGCCATCCT +
Preference number: 5 (lower is better)
Translates to: YLLCGPVYDLFLRMFHAQESCIE*HMLSHP
Trigger: AGGATGGCTCAACATATGCAACTCAATACATGATTC...CTGTGCATGGAACATTCTCAAAAATAGGTCATATACTGGACCACAAAGCAAGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp TACACCCATTTTCTGTTCCCACCTACCACACTAAATTCTTGTGATCTTTCTACTTATATTCTGTGGTTGTaGGGTAGAATGTTCTTCAGA +
Preference number: 5 (lower is better)
Translates to: YTHFLFPPTTLNSCDLSTYILWL*GRMFFR
Trigger: TCTGAAGAACATTCTACCCAACAACCACAGAATATA...AGTAGAAAGATCACAAGAATTTAGTGTGGTAGGTGGGAACAGAAAATGGGTGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp GAATGTTCCATGCACAGAAGAGAAGAGTATATATTCTGTGGTTGTTGGGTAGAAGTATATGACCTATTTTaGAGAATGTTCCATGCACAG +
Preference number: 5 (lower is better)
Translates to: ECSMHRREEYIFCGCWVEVYDLF*RMFHAQ
Trigger: CTGTGCATGGAACATTCTCAAAAATAGGTCATATAC...TTCTACCCAACAACCACAGAATATATACTCTTCTCTTCTGTGCATGGAACATTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp TTCTCAGTCTCATTTTTGCCTGCTCTGATATTTGTTATTGCTTTTCTTCTGCCATATATTCTGTGGTTGTaGGGTAGAATGTTCTTCAGA +
Preference number: 5 (lower is better)
Translates to: FSVSFLPALIFVIAFLLPYILWL*GRMFFR
Trigger: TCTGAAGAACATTCTACCCAACAACCACAGAATATA...TGGCAGAAGAAAAGCAATAACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp CCCTTGAGTTTAGATTTCCAGGCTCTAAACTATGAGAGAATAAATTTCTCTTGTGTATATGACCTATTTTaGAGAATGTTCCATGCACAG +
Preference number: 5 (lower is better)
Translates to: PLSLDFQALNYERINFSCVYDLF*RMFHAQ
Trigger: CTGTGCATGGAACATTCTCAAAAATAGGTCATATAC...ACAAGAGAAATTTATTCTCTCATAGTTTAGAGCCTGGAAATCTAAACTCAAGGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp CCCTTGAGTTTAGATTTCCAGGCTCTAAACTATGAGAGAATAAATTTCTCTTGTTTCTCAGTCTCATTTTaGCCTGCTCTGATATTTGTT +
Preference number: 5 (lower is better)
Translates to: PLSLDFQALNYERINFSCFSVSF*PALIFV
Trigger: AACAAATATCAGAGCAGGCAAAAATGAGACTGAGAA...ACAAGAGAAATTTATTCTCTCATAGTTTAGAGCCTGGAAATCTAAACTCAAGGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS-3UTR CAA 90 bp CCCTTGAGTTTAGATTTCCAGGCTCTAAACTATGAGAGAATAAATTTCTCTTGTAGGAATAAAATCCACTaGACTGTGCTGTTACTATCT +
Preference number: 5 (lower is better)
Translates to: PLSLDFQALNYERINFSCRNKIH*TVLLLS
Trigger: AGATAGTAACAGCACAGTCAAGTGGATTTTATTCCT...ACAAGAGAAATTTATTCTCTCATAGTTTAGAGCCTGGAAATCTAAACTCAAGGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520965.5
CDS GCA 72 bp CCTGTCAGCTCCTCGCCTGGGCCCACCCGAAACGGCTaGTCCCTCAACTCTCAACATCCAGCCGAGCCTCGG +
Preference number: 6 (lower is better)
Translates to: PVSSSPGPTRNG*SLNSQHPAEPR
Trigger: CCGAGGCTCGGCTGGATGTTGAGAGTTGAGGGAGCAGCCGTTTCGGGTGGGCCCAGGCGAGGAGCTGACAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520907.1
CDS CCA 72 bp AGCGGGACCCACGCCGATTCCTGTCAGCTCCTCGCCTaGGCCCACCCGAAACGGCTGCTCCCTCAACTCTCA +
Preference number: 6 (lower is better)
Translates to: SGTHADSCQLLA*AHPKRLLPQLS
Trigger: TGAGAGTTGAGGGAGCAGCCGTTTCGGGTGGGCCCAGGCGAGGAGCTGACAGGAATCGGCGTGGGTCCCGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520907.1
CDS CAA 90 bp AAACGGCTGCTCCCTCAACTCTCAACATCCAGCCGAGCCTCGGAGTaGCGGGTCGCCGTAGCGCTGCGCAATGGAGATGAGCCTCCCGGG +
Preference number: 6 (lower is better)
Translates to: KRLLPQLSTSSRASE*RVAVALRNGDEPPG
Trigger: CCCGGGAGGCTCATCTCCATTGCGCAGCGCTACGGCGACCCGCAACTCCGAGGCTCGGCTGGATGTTGAGAGTTGAGGGAGCAGCCGTTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520907.1
CDS CAA 72 bp CTCCCTCAACTCTCAACATCCAGCCGAGCCTCGGAGTaGCGGGTCGCCGTAGCGCTGCGCAATGGAGATGAG +
Preference number: 6 (lower is better)
Translates to: LPQLSTSSRASE*RVAVALRNGDE
Trigger: CTCATCTCCATTGCGCAGCGCTACGGCGACCCGCAACTCCGAGGCTCGGCTGGATGTTGAGAGTTGAGGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520907.1
CDS GCA 72 bp AGGGTCCCGCCAGGAGTGACGAAACGTTCGAATTCCTaGGAGAAAAGTGGCAGGCCACCAGGCCCTCTGGGA +
Preference number: 6 (lower is better)
Translates to: RVPPGVTKRSNS*EKSGRPPGPLG
Trigger: TCCCAGAGGGCCTGGTGGCCTGCCACTTTTCTCGCAGGAATTCGAACGTTTCGTCACTCCTGGCGGGACCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520907.1
CDS TCA 72 bp CCCTTTCCAGTCATCCCGGATGGGAACTTGCAGACCTaGGCCAGTTCTCCTGGGGACCAAAATATCTCACCT +
Preference number: 6 (lower is better)
Translates to: PFPVIPDGNLQT*ASSPGDQNISP
Trigger: AGGTGAGATATTTTGGTCCCCAGGAGAACTGGCTCAGGTCTGCAAGTTCCCATCCGGGATGACTGGAAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000520965.5
CDS GCA 72 bp CCAATTCCAGTGGCTCAGGGGAAAGGTTGTGTTCACTaGTGTCCAGGGTTGGAATCTGACCAGACCTCAGAG +
Preference number: 6 (lower is better)
Translates to: PIPVAQGKGCVH*CPGLESDQTSE
Trigger: CTCTGAGGTCTGGTCAGATTCCAACCCTGGACAGCAGTGAACACAACCTTTCCCCTGAGCCACTGGAATTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000391711.8
ENST00000520907.1
ENST00000520965.5
CDS GCA 72 bp CACCTAAGCCCTTTCCAGTCATCCCGGATGGGAACTTaGAGACCTGAGCCAGTTCTCCTGGGGACCAAAATA +
Preference number: 6 (lower is better)
Translates to: HLSPFQSSRMGT*RPEPVLLGTKI
Trigger: TATTTTGGTCCCCAGGAGAACTGGCTCAGGTCTGCAAGTTCCCATCCGGGATGACTGGAAAGGGCTTAGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000520965.5
CDS CAA 90 bp ATTCCAGTGGCTCAGGGGAAAGGTTGTGTTCACTGCTGTCCAGGGTaGGAATCTGACCAGACCTCAGAGAGGTTTCCATGTTGGCCAGGA +
Preference number: 6 (lower is better)
Translates to: IPVAQGKGCVHCCPG*ESDQTSERFPCWPG
Trigger: TCCTGGCCAACATGGAAACCTCTCTGAGGTCTGGTCAGATTCCAACCCTGGACAGCAGTGAACACAACCTTTCCCCTGAGCCACTGGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000520965.5
CDS TCA 72 bp GAAAGGTTGTGTTCACTGCTGTCCAGGGTTGGAATCTaGCCAGACCTCAGAGAGGTTTCCATGTTGGCCAGG +
Preference number: 6 (lower is better)
Translates to: ERLCSLLSRVGI*PDLREVSMLAR
Trigger: CCTGGCCAACATGGAAACCTCTCTGAGGTCTGGTCAGATTCCAACCCTGGACAGCAGTGAACACAACCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520965.5
CDS CAA 90 bp ATTCCAGTGGCTCAGGGGAAAGGTTGTGTTCACTGCTGTCCAGGGTaGGAATCTGACCAGACCTCAGAGAGGTTTCCTCCCAGATCTAAG +
Preference number: 6 (lower is better)
Translates to: IPVAQGKGCVHCCPG*ESDQTSERFPPRSK
Trigger: CTTAGATCTGGGAGGAAACCTCTCTGAGGTCTGGTCAGATTCCAACCCTGGACAGCAGTGAACACAACCTTTCCCCTGAGCCACTGGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000391711.8
ENST00000520907.1