RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZNF791 (Homo sapiens)

Ensembl gene IDs: ENSG00000173875

Ensembl transcript IDs: ENST00000343325.9, ENST00000446165.2, ENST00000498389.1, ENST00000597691.5, ENST00000598225.5

Found 208 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAAACTGTACGTGGATCTTTGATGCGGAGCTTGTGGAGACAACTGTaGAAACCAACACATCTCTTTGAGAATGGAAGTCAAGCAGCTCAG +
Preference number: 1 (lower is better)
Translates to: QTVRGSLMRSLWRQL*KPTHLFENGSQAAQ
Trigger: CTGAGCTGCTTGACTTCCATTCTCAAAGAGATGTGTTGGTTTCCACAGTTGTCTCCACAAGCTCCGCATCAAAGATCCACGTACAGTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR TCA 90 bp GATGCGGAGCTTGTGGAGACAACTGTGGAAACCAACACATCTCTTTaGGAATGGAAGTCAAGCAGCTCAGGGTGTTTTCAGGATACTTTT +
Preference number: 1 (lower is better)
Translates to: DAELVETTVETNTSL*EWKSSSSGCFQDTF
Trigger: AAAAGTATCCTGAAAACACCCTGAGCTGCTTGACTTCCATTCTCAAAGAGATGTGTTGGTTTCCACAGTTGTCTCCACAAGCTCCGCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR TCA 90 bp TATATAATCTTATGGGGCTACCAACCTATATGGTCCATTGCTGACTaGAACATGATTATGTGGTACCTGACTATACATGAATCATCTTGT +
Preference number: 1 (lower is better)
Translates to: YIILWGYQPIWSIAD*NMIMWYLTIHESSC
Trigger: ACAAGATGATTCATGTATAGTCAGGTACCACATAATCATGTTTCAGTCAGCAATGGACCATATAGGTTGGTAGCCCCATAAGATTATATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CCA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCAGCTGAGGCAGGAGAATaGCGTGGACCCGGGAGGCGG +
Preference number: 2 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSAEAGE*RGPGRR
Trigger: CCGCCTCCCGGGTCCACGCCATTCTCCTGCCTCAGC...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CCA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCAGGCAGGAGAATGGCGTaGACCCGGGAGGCGGAGCTT +
Preference number: 2 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSGRRMA*TREAEL
Trigger: AAGCTCCGCCTCCCGGGTCCACGCCATTCTCCTGCC...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CCA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATATGGTCTTGATCTCCTaGCCTCGTGATCCGCCCGCC +
Preference number: 2 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHMVLIS*PRDPPA
Trigger: GGCGGGCGGATCACGAGGCCAGGAGATCAAGACCAT...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CCA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCAGGCCTCCCAAGTAGCTaGGACTACAGGCACACCAGA +
Preference number: 2 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSGLPSS*DYRHTR
Trigger: TCTGGTGTGCCTGTAGTCCCAGCTACTTGGGAGGCC...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR GCA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATCTCAGGCAATCCTCCTaGCTCAGCCTCCCATGTAGA +
Preference number: 2 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHLRQSS*LSLPCR
Trigger: TCTACATGGGAGGCTGAGGCAGGAGGATTGCCTGAG...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCAGCTGAGGCAGGAGAATaGCGTGGACCCGGGAGGCGG +
Preference number: 2 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISAEAGE*RGPGRR
Trigger: CCGCCTCCCGGGTCCACGCCATTCTCCTGCCTCAGC...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR TCA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCAAGCTCGTATCCAGTGTaGGACCTCATGTGTCTAGTA +
Preference number: 2 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSSSYPV*DLMCLV
Trigger: TACTAGACACATGAGGTCTCACACTGGATACGAGCT...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000446165.2
3UTR-3UTR TCA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATGTGTCTAGTAAGGGATaGGAGACGCATGAAGGCTTT +
Preference number: 2 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHVSSKG*ETHEGF
Trigger: AAAGCCTTCATGCGTCTCTCATCCCTTACTAGACAC...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000446165.2
3UTR-3UTR GCA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCAAATATCATTGTCTTCTaGCTCCATGTTTTGTCCCGC +
Preference number: 2 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSNIIVF*LHVLSR
Trigger: GCGGGACAAAACATGGAGGCAGAAGACAATGATATT...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR TCA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCAGTACCTGACTATACATaGATCATCTTGTATCTCGCT +
Preference number: 2 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSVPDYT*IILYLA
Trigger: AGCGAGATACAAGATGATTCATGTATAGTCAGGTAC...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR GCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCAGGCCTCCTGGGTTTATaGCATTCTCCTGCCTCAGCC +
Preference number: 2 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISGLLGL*HSPASA
Trigger: GGCTGAGGCAGGAGAATGGCATAAACCCAGGAGGCC...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR GCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCAGGAGTCTCGTTCTGCTaGCCAGGCTGGATTGCAGTG +
Preference number: 2 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISGVSFC*PGWIAV
Trigger: CACTGCAATCCAGCCTGGGCAGCAGAACGAGACTCC...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCACAGGCTGGATTGCAGTaGCACGATCTCGGCTCACTG +
Preference number: 2 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISQAGLQ*HDLGSL
Trigger: CAGTGAGCCGAGATCGTGCCACTGCAATCCAGCCTG...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR TCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCATTGGGATCACAGGTGTaGCCATGCCCAGCTGTGTTG +
Preference number: 2 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISLGSQV*PCPAVL
Trigger: CAACACAGCTGGGCATGGTCACACCTGTGATCCCAA...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCATTCTGCTGCCCAGGCTaGATTGCAGTGGCACGATCT +
Preference number: 2 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISFCCPG*IAVARS
Trigger: AGATCGTGCCACTGCAATCCAGCCTGGGCAGCAGAA...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CCA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATGATAGTACACTCATATaGTTTTACTCCGGCAGTCTT +
Preference number: 2 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHDSTLI*FYSGSL
Trigger: AAGACTGCCGGAGTAAAACCATATGAGTGTACTATC...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000446165.2
3UTR-3UTR TCA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATGTACTTTTATACAACTaGAAGTGCAGCACGTTTACA +
Preference number: 2 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHVLLYN*KCSTFT
Trigger: TGTAAACGTGCTGCACTTTCAGTTGTATAAAAGTAC...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR TCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCACTGTACGTGGATCTTTaGTGCGGAGCTTGTGGAGAC +
Preference number: 2 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISLYVDL*CGACGD
Trigger: GTCTCCACAAGCTCCGCATCAAAGATCCACGTACAG...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR GCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTATGGTGGCGGGCGCCTaGAGTCCCAGCTACTGGGGA +
Preference number: 2 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICMVAGA*SPSYWG
Trigger: TCCCCAGTAGCTGGGACTGCAGGCGCCCGCCACCAT...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR GCA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATACTGGGAAAAATGAATaGCTTTCCACATTCTTTGCA +
Preference number: 2 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHTGKNE*LSTFFA
Trigger: TGCAAAGAATGTGGAAAGGCATTCATTTTTCCCAGT...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000446165.2
3UTR-3UTR TCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTAGCTACTGGGGAGGCTaGGGCAGGAGAATGGCGTGG +
Preference number: 2 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICSYWGG*GRRMAW
Trigger: CCACGCCATTCTCCTGCCTCAGCCTCCCCAGTAGCT...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR GCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCATTTATGCCATTCTCCTaGCTCAGCCTCCCAAGTAGC +
Preference number: 2 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISFMPFS*LSLPSS
Trigger: GCTACTTGGGAGGCTGAGGCAGGAGAATGGCATAAA...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR GCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCATTCAAGCGATTCTCCTaGTTTGGCCTCCCAAGTAGC +
Preference number: 2 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISFKRFS*FGLPSS
Trigger: GCTACTTGGGAGGCCAAAGCAGGAGAATCGCTTGAA...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR TCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCACCTGGCTTAACACGGTaGAACCCCATCTCTACTAAA +
Preference number: 2 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISPGLTR*NPISTK
Trigger: TTTAGTAGAGATGGGGTTTCACCGTGTTAAGCCAGG...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR TCA 90 bp AGTACACTCATATGGTTTTACTCCGGCAGTCTTCTTCGTCACACTGAGATTGGGGTGTCTAGTAAGGGATaGGAGACGCATGAAGGCTTT +
Preference number: 2 (lower is better)
Translates to: STLIWFYSGSLLRHTEIGVSSKG*ETHEGF
Trigger: AAAGCCTTCATGCGTCTCTCATCCCTTACTAGACAC...CCCAATCTCAGTGTGACGAAGAAGACTGCCGGAGTAAAACCATATGAGTGTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000598225.5
3UTR-3UTR TCA 90 bp AGTACACTCATATGGTTTTACTCCGGCAGTCTTCTTCGTCACACTGAGATTGGGAGCTCGTATCCAGTGTaGGACCTCATGTGTCTAGTA +
Preference number: 2 (lower is better)
Translates to: STLIWFYSGSLLRHTEIGSSYPV*DLMCLV
Trigger: TACTAGACACATGAGGTCTCACACTGGATACGAGCT...CCCAATCTCAGTGTGACGAAGAAGACTGCCGGAGTAAAACCATATGAGTGTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000598225.5
3UTR-3UTR GCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCAGGAATTACAGGTGCATaGCACCACGCTCAGGTAATT +
Preference number: 2 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISGITGA*HHAQVI
Trigger: AATTACCTGAGCGTGGTGGCATGCACCTGTAATTCC...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR GCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGCTGCCCAGGCTGGATTaGAGTGGCACGATCTCGGCT +
Preference number: 2 (lower is better)
Translates to: ILVTVCQYSTISLFREQLLPRLD*SGTISA
Trigger: AGCCGAGATCGTGCCACTGCAATCCAGCCTGGGCAG...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCAGGTTTCCCAAAGTGCTaGAATTACAAAGGAGTGAGC +
Preference number: 2 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISGFPKC*NYKGVS
Trigger: GCTCACTCCTTTGTAATTCCAGCACTTTGGGAAACC...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CCA 90 bp AGTACACTCATATGGTTTTACTCCGGCAGTCTTCTTCGTCACACTGAGATTGGGAGTCTCTCTCCCGTATaGCTTCTTAGATTTCGTCCT +
Preference number: 2 (lower is better)
Translates to: STLIWFYSGSLLRHTEIGSLSPV*LLRFRP
Trigger: AGGACGAAATCTAAGAAGCCATACGGGAGAGAGACT...CCCAATCTCAGTGTGACGAAGAAGACTGCCGGAGTAAAACCATATGAGTGTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000598225.5
3UTR-3UTR TCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTTTGGGATCACAGGTGTaGCCATGCCCAGCTGTGTTG +
Preference number: 2 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICLGSQV*PCPAVL
Trigger: CAACACAGCTGGGCATGGTCACACCTGTGATCCCAA...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR TCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTGAGTCAGTTGAGTGGTaGGTGAATGCGAAGGCCCAG +
Preference number: 2 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICESVEW*VNAKAQ
Trigger: CTGGGCCTTCGCATTCACTCACCACTCAACTGACTC...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR GCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCATCCATGAACATAGCTTaGAGGACTAGAAGTTGCTCT +
Preference number: 2 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISSMNIA*RTRSCS
Trigger: AGAGCAACTTCTAGTCCTGCAAGCTATGTTCATGGA...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR GCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCACTTGGTTTCCCAAAGTaGTGGAATTACAAAGGAGTG +
Preference number: 2 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISLGFPK*WNYKGV
Trigger: CACTCCTTTGTAATTCCAGCACTTTGGGAAACCAAG...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR GCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCAAGGTGCCCTCCAACATaGCCAGCTAATTTTTGTATT +
Preference number: 2 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISRCPPT*PANFCI
Trigger: AATACAAAAATTAGCTGGGCATGTTGGAGGGCACCT...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CCA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTGGCCTCCCAAGTAGCTaGGACTACAGGCACACCAGA +
Preference number: 2 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFIGLPSS*DYRHTR
Trigger: TCTGGTGTGCCTGTAGTCCCAGCTACTTGGGAGGCC...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGAGACTCCTGAGTAGCTaGGACTACAGACGCCCGCCA +
Preference number: 2 (lower is better)
Translates to: ILVTVCQYSTISLFREQLRLLSS*DYRRPP
Trigger: TGGCGGGCGTCTGTAGTCCCAGCTACTCAGGAGTCT...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR TCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGGAGTCAGTTGAGTGGTaGGTGAATGCGAAGGCCCAG +
Preference number: 2 (lower is better)
Translates to: ILVTVCQYSTISLFREQLESVEW*VNAKAQ
Trigger: CTGGGCCTTCGCATTCACTCACCACTCAACTGACTC...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR TCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTCCTCCCAGGTTCAAATaGTTCTCCTGCTTCAGCCTC +
Preference number: 2 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICPPRFK*FSCFSL
Trigger: GAGGCTGAAGCAGGAGAATCATTTGAACCTGGGAGG...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGAGAGTCTCGCTCTGTTaGCCGGATCTCAGCTCACTG +
Preference number: 2 (lower is better)
Translates to: ILVTVCQYSTISLFREQLRVSLC*PDLSSL
Trigger: CAGTGAGCTGAGATCCGGCCAACAGAGCGAGACTCT...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CCA 90 bp AGTACACTCATATGGTTTTACTCCGGCAGTCTTCTTCGTCACACTGAGATTGGGGATAGTACACTCATATaGTTTTACTCCGGCAGTCTT +
Preference number: 2 (lower is better)
Translates to: STLIWFYSGSLLRHTEIGDSTLI*FYSGSL
Trigger: AAGACTGCCGGAGTAAAACCATATGAGTGTACTATC...CCCAATCTCAGTGTGACGAAGAAGACTGCCGGAGTAAAACCATATGAGTGTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000598225.5
3UTR-3UTR TCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCAGTACTTTTATACAACTaGAAGTGCAGCACGTTTACA +
Preference number: 2 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISVLLYN*KCSTFT
Trigger: TGTAAACGTGCTGCACTTTCAGTTGTATAAAAGTAC...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR TCA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTTGGACTGCCATCACGTaGTCTTGGTTCACTGTAGCC +
Preference number: 2 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFIWTAIT*SWFTVA
Trigger: GGCTACAGTGAACCAAGATCACGTGATGGCAGTCCA...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR TCA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCCTCCCAGGTTCAAATaGTTCTCCTGCTTCAGCCTC +
Preference number: 2 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFIPPRFK*FSCFSL
Trigger: GAGGCTGAAGCAGGAGAATCATTTGAACCTGGGAGG...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR GCA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTAGCTGGAATTACAGGTaGATGCCACCACGCTCAGGT +
Preference number: 2 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFISWNYR*MPPRSG
Trigger: ACCTGAGCGTGGTGGCATGCACCTGTAATTCCAGCT...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR GCA 90 bp AGTACACTCATATGGTTTTACTCCGGCAGTCTTCTTCGTCACACTGAGATTGGGTTTTTCCCCTATAGATaGCAGGTTCTTGAATGTTTC +
Preference number: 2 (lower is better)
Translates to: STLIWFYSGSLLRHTEIGFFPYR*QVLECF
Trigger: GAAACATTCAAGAACCTGGCATCTATAGGGGAAAAA...CCCAATCTCAGTGTGACGAAGAAGACTGCCGGAGTAAAACCATATGAGTGTACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000598225.5
3UTR-3UTR TCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGCCAACCATGACAGTCTaGAATAGATGCTTGGGCCAC +
Preference number: 2 (lower is better)
Translates to: ILVTVCQYSTISLFREQLPTMTV*NRCLGH
Trigger: GTGGCCCAAGCATCTATTTCAGACTGTCATGGTTGG...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR GCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGTTTATGCCATTCTCCTaGCTCAGCCTCCCAAGTAGC +
Preference number: 2 (lower is better)
Translates to: ILVTVCQYSTISLFREQLFMPFS*LSLPSS
Trigger: GCTACTTGGGAGGCTGAGGCAGGAGAATGGCATAAA...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR GCA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTTTCAAGCGATTCTCCTaGTTTGGCCTCCCAAGTAGC +
Preference number: 2 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFIFKRFS*FGLPSS
Trigger: GCTACTTGGGAGGCCAAAGCAGGAGAATCGCTTGAA...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTTTAGTCTCCCAGTGTTaGGATCACAGGTGTGACCAT +
Preference number: 2 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICLVSQC*DHRCDH
Trigger: ATGGTCACACCTGTGATCCCAACACTGGGAGACTAA...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR TCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTTGGTCCATTGCTGACTaGAACATGATTATGTGGTAC +
Preference number: 2 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATWSIAD*NMIMWY
Trigger: GTACCACATAATCATGTTTCAGTCAGCAATGGACCA...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR GCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGATCAAGCAATCCTACTaGCTTAGTCTCCCAGTGTTG +
Preference number: 2 (lower is better)
Translates to: ILVTVCQYSTISLFREQLIKQSY*LSLPVL
Trigger: CAACACTGGGAGACTAAGGCAGTAGGATTGCTTGAT...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR GCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTCTTGGTTTCCCAAAGTaGTGGAATTACAAAGGAGTG +
Preference number: 2 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICLGFPK*WNYKGV
Trigger: CACTCCTTTGTAATTCCAGCACTTTGGGAAACCAAG...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGGTGAGCCACCGTGTCTaGCCAAGAAATTTAAAAAGC +
Preference number: 2 (lower is better)
Translates to: ILVTVCQYSTISLFREQLVSHRV*PRNLKS
Trigger: GCTTTTTAAATTTCTTGGCCAGACACGGTGGCTCAC...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR TCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGTGGGGTTCCAATACCTaGCTAATGTCTTCTTCACTT +
Preference number: 2 (lower is better)
Translates to: ILVTVCQYSTISLFREQLWGSNT*LMSSSL
Trigger: AAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCA...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR TCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGGAACAATGCCAACCATaGCAGTCTGAAATAGATGCT +
Preference number: 2 (lower is better)
Translates to: ILVTVCQYSTISLFREQLEQCQP*QSEIDA
Trigger: AGCATCTATTTCAGACTGTCATGGTTGGCATTGTTC...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR GCA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTTCCATGAACATAGCTTaGAGGACTAGAAGTTGCTCT +
Preference number: 2 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFISMNIA*RTRSCS
Trigger: AGAGCAACTTCTAGTCCTGCAAGCTATGTTCATGGA...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR GCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGAGGTGCCCTCCAACATaGCCAGCTAATTTTTGTATT +
Preference number: 2 (lower is better)
Translates to: ILVTVCQYSTISLFREQLRCPPT*PANFCI
Trigger: AATACAAAAATTAGCTGGGCATGTTGGAGGGCACCT...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGAATCCAAACTGTACGTaGATCTTTGATGCGGAGCTT +
Preference number: 2 (lower is better)
Translates to: ILVTVCQYSTISLFREQLNPNCT*IFDAEL
Trigger: AAGCTCCGCATCAAAGATCCACGTACAGTTTGGATT...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR TCA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTGTACCTGACTATACATaGATCATCTTGTATCTCGCT +
Preference number: 2 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFIVPDYT*IILYLA
Trigger: AGCGAGATACAAGATGATTCATGTATAGTCAGGTAC...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR CCA 72 bp TTGGCCGGATCTCAGCTCACTGTCAGCTCGGCCTCCTaGGTTTATGCCATTCTCCTGCCTCAGCCTCCCAAG +
Preference number: 3 (lower is better)
Translates to: LAGSQLTVSSAS*VYAILLPQPPK
Trigger: CTTGGGAGGCTGAGGCAGGAGAATGGCATAAACCCAGGAGGCCGAGCTGACAGTGAGCTGAGATCCGGCCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CAA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATTTAGCCAGGATGGTCTaGATCTCCTGGCCTCGTGAT +
Preference number: 3 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHLARMV*ISWPRD
Trigger: ATCACGAGGCCAGGAGATCAAGACCATCCTGGCTAA...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CAA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATAGTCCGCTCATGTCTTaGAAAGGGCTGGTGATATAT +
Preference number: 3 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHSPLMS*KGLVIY
Trigger: ATATATCACCAGCCCTTTCAAAGACATGAGCGGACT...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000446165.2
3UTR-3UTR CAA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCAAGCGATTCTCCTGCTTaGGCCTCCCAAGTAGCTGGG +
Preference number: 3 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISSDSPA*ASQVAG
Trigger: CCCAGCTACTTGGGAGGCCAAAGCAGGAGAATCGCT...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR TCA 72 bp GGACTAGAAGTTGCTCTGGGTGAGTCAGTTGAGTGGTaGGTGAATGCGAAGGCCCAGGATGTTACTGTACAC +
Preference number: 3 (lower is better)
Translates to: GLEVALGESVEW*VNAKAQDVTVH
Trigger: GTGTACAGTAACATCCTGGGCCTTCGCATTCACTCACCACTCAACTGACTCACCCAGAGCAACTTCTAGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CAA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCACAGGGTCTCACTAGGTaGACCAGAGTAGTCCTGGCA +
Preference number: 3 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISQGLTR*TRVVLA
Trigger: TGCCAGGACTACTCTGGTCAACCTAGTGAGACCCTG...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CAA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATTTTACAGGCAGAGATaGCTTAATCATGGGTATATG +
Preference number: 3 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSFYRQR*LNHGYM
Trigger: CATATACCCATGATTAAGCAATCTCTGCCTGTAAAA...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR GCA 72 bp CTACACGGGGTGAGGATCATCAATATCATTGTCTTCTaGCTCCATGTTTTGTCCCGCCAGAATACGTTCAGG +
Preference number: 3 (lower is better)
Translates to: LHGVRIINIIVF*LHVLSRQNTFR
Trigger: CCTGAACGTATTCTGGCGGGACAAAACATGGAGGCAGAAGACAATGATATTGATGATCCTCACCCCGTGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CAA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCACAGGGTTTCATCATGTaGACCAGGCTGGTCTTGAAC +
Preference number: 3 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISQGFIM*TRLVLN
Trigger: GTTCAAGACCAGCCTGGTCAACATGATGAAACCCTG...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CAA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGGCTGCCCAGGCTGGATaGCAGTGGCACGATCTCGGC +
Preference number: 3 (lower is better)
Translates to: ILVTVCQYSTISLFREQLAAQAG*QWHDLG
Trigger: GCCGAGATCGTGCCACTGCAATCCAGCCTGGGCAGC...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CAA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTCAGAGTCTCGCTCTGTaGGCCGGATCTCAGCTCACT +
Preference number: 3 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICQSLAL*AGSQLT
Trigger: AGTGAGCTGAGATCCGGCCAACAGAGCGAGACTCTG...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR CCA 72 bp CGTGGATCTTTGATGCGGAGCTTGTGGAGACAACTGTaGAAACCAACACATCTCTTTGAGAATGGAAGTCAA +
Preference number: 3 (lower is better)
Translates to: RGSLMRSLWRQL*KPTHLFENGSQ
Trigger: TTGACTTCCATTCTCAAAGAGATGTGTTGGTTTCCACAGTTGTCTCCACAAGCTCCGCATCAAAGATCCACG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CAA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGTCTCGCTCTGTaGGCCGGATCTCAGCTCACT +
Preference number: 3 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFIQSLAL*AGSQLT
Trigger: AGTGAGCTGAGATCCGGCCAACAGAGCGAGACTCTG...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CAA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGAGCGATTCTCCTGCTTaGGCCTCCCAAGTAGCTGGG +
Preference number: 3 (lower is better)
Translates to: ILVTVCQYSTISLFREQLSDSPA*ASQVAG
Trigger: CCCAGCTACTTGGGAGGCCAAAGCAGGAGAATCGCT...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR TCA 72 bp CATTTATATGGCTTCTCAAATAGCTCGTATCCAGTGTaGGACCTCATGTGTCTAGTAAGGGATGAGAGACGC +
Preference number: 3 (lower is better)
Translates to: HLYGFSNSSYPV*DLMCLVRDERR
Trigger: GCGTCTCTCATCCCTTACTAGACACATGAGGTCTCACACTGGATACGAGCTATTTGAGAAGCCATATAAATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000446165.2
ENST00000598225.5
3UTR-3UTR CAA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGTTAGCCAGGATGGTCTaGATCTCCTGGCCTCGTGAT +
Preference number: 3 (lower is better)
Translates to: ILVTVCQYSTISLFREQLLARMV*ISWPRD
Trigger: ATCACGAGGCCAGGAGATCAAGACCATCCTGGCTAA...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CAA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGGGTTTCATCATGTaGACCAGGCTGGTCTTGAAC +
Preference number: 3 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFIQGFIM*TRLVLN
Trigger: GTTCAAGACCAGCCTGGTCAACATGATGAAACCCTG...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CAA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGAGTGATCTGCTTGCCTaGGTTTCCCAAAGTGCTGGA +
Preference number: 3 (lower is better)
Translates to: ILVTVCQYSTISLFREQLSDLLA*VSQSAG
Trigger: TCCAGCACTTTGGGAAACCAAGGCAAGCAGATCACT...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CAA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGACTGTACGTGGATCTTaGATGCGGAGCTTGTGGAGA +
Preference number: 3 (lower is better)
Translates to: ILVTVCQYSTISLFREQLTVRGS*MRSLWR
Trigger: TCTCCACAAGCTCCGCATCAAAGATCCACGTACAGT...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CAA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGTCTTTGATGCGGAGCTaGTGGAGACAACTGTGGAAA +
Preference number: 3 (lower is better)
Translates to: ILVTVCQYSTISLFREQLSLMRS*WRQLWK
Trigger: TTTCCACAGTTGTCTCCACAAGCTCCGCATCAAAGA...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR TCA 72 bp TTATGGGGCTACCAACCTATATGGTCCATTGCTGACTaGAACATGATTATGTGGTACCTGACTATACATGAA +
Preference number: 3 (lower is better)
Translates to: LWGYQPIWSIAD*NMIMWYLTIHE
Trigger: TTCATGTATAGTCAGGTACCACATAATCATGTTTCAGTCAGCAATGGACCATATAGGTTGGTAGCCCCATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR TCA 72 bp AATCTTATGGGGCTACCAACCTATATGGTCCATTGCTaGCTGAAACATGATTATGTGGTACCTGACTATACA +
Preference number: 3 (lower is better)
Translates to: NLMGLPTYMVHC*LKHDYVVPDYT
Trigger: TGTATAGTCAGGTACCACATAATCATGTTTCAGTCAGCAATGGACCATATAGGTTGGTAGCCCCATAAGATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CAA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTAGTCCAGAGATGTACTaGAAGAATGAGCCAGTGATA +
Preference number: 3 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFISPEMY*KNEPVI
Trigger: TATCACTGGCTCATTCTTCAAGTACATCTCTGGACT...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR-3UTR CAA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTGGATCATCAATATCATaGTCTTCTGCCTCCATGTTT +
Preference number: 3 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFIGSSIS*SSASMF
Trigger: AAACATGGAGGCAGAAGACAATGATATTGATGATCC...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATGGCAGGAGAATGGCGTaGACCCGGGAGGCGGAGCTT +
Preference number: 4 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHGRRMA*TREAEL
Trigger: AAGCTCCGCCTCCCGGGTCCACGCCATTCTCCTGCC...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATAGGGGTACAGCAACCTaGCGCGTCAAGGGGCCAGGA +
Preference number: 4 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHRGTAT*RVKGPG
Trigger: TCCTGGCCCCTTGACGCGTCAGGTTGCTGTACCCCT...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATCTGCCCAGGCTGGATTaGAGTGGCACGATCTCGGCT +
Preference number: 4 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHLPRLD*SGTISA
Trigger: AGCCGAGATCGTGCCACTGCAATCCAGCCTGGGCAG...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCAGGAGTCTCGTTCTGCTaGCCAGGCTGGATTGCAGTG +
Preference number: 4 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSGVSFC*PGWIAV
Trigger: CACTGCAATCCAGCCTGGGCAGCAGAACGAGACTCC...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCACTCAGGCAATCCTCCTaGCTCAGCCTCCCATGTAGA +
Preference number: 4 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSLRQSS*LSLPCR
Trigger: TCTACATGGGAGGCTGAGGCAGGAGGATTGCCTGAG...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATGGAGTCTCGTTCTGCTaGCCAGGCTGGATTGCAGTG +
Preference number: 4 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHGVSFC*PGWIAV
Trigger: CACTGCAATCCAGCCTGGGCAGCAGAACGAGACTCC...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATAGACTCCTGAGTAGCTaGGACTACAGACGCCCGCCA +
Preference number: 4 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHRLLSS*DYRRPP
Trigger: TGGCGGGCGTCTGTAGTCCCAGCTACTCAGGAGTCT...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATTCTGCTGCCCAGGCTaGATTGCAGTGGCACGATCT +
Preference number: 4 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSFCCPG*IAVARS
Trigger: AGATCGTGCCACTGCAATCCAGCCTGGGCAGCAGAA...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATGAGTCAGTTGAGTGGTaGGTGAATGCGAAGGCCCAG +
Preference number: 4 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHESVEW*VNAKAQ
Trigger: CTGGGCCTTCGCATTCACTCACCACTCAACTGACTC...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCAAGCTGGAATTACAGGTaGATGCCACCACGCTCAGGT +
Preference number: 4 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSSWNYR*MPPRSG
Trigger: ACCTGAGCGTGGTGGCATGCACCTGTAATTCCAGCT...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCACCAACCATGACAGTCTaGAATAGATGCTTGGGCCAC +
Preference number: 4 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSPTMTV*NRCLGH
Trigger: GTGGCCCAAGCATCTATTTCAGACTGTCATGGTTGG...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATTCAAGCGATTCTCCTaGTTTGGCCTCCCAAGTAGC +
Preference number: 4 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSFKRFS*FGLPSS
Trigger: GCTACTTGGGAGGCCAAAGCAGGAGAATCGCTTGAA...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATTCAAGCATTTCTCCTaGCTCAGCCTCCCAAGTAGC +
Preference number: 4 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSFKHFS*LSLPSS
Trigger: GCTACTTGGGAGGCTGAGGCAGGAGAAATGCTTGAA...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR CAA 72 bp TCACTGTCACCCATGCTGGACTGCCATCACGTGATCTaGGTTCACTGTAGCCTTGAACTCCTGGGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: SLSPMLDCHHVI*VHCSLELLGSG
Trigger: GCCTGAGCCCAGGAGTTCAAGGCTACAGTGAACCAAGATCACGTGATGGCAGTCCAGCATGGGTGACAGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATTGCTTGGGCCACACATaGAGGCTAGAAGGAAAATCC +
Preference number: 4 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHCLGHT*RLEGKS
Trigger: GGATTTTCCTTCTAGCCTTCATGTGTGGCCCAAGCA...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCAAGGGGTACAGCAACCTaGCGCGTCAAGGGGCCAGGA +
Preference number: 4 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISRGTAT*RVKGPG
Trigger: TCCTGGCCCCTTGACGCGTCAGGTTGCTGTACCCCT...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp AGTACACTCATATGGTTTTACTCCGGCAGTCTTCTTCGTCACACTGAGATTGGGAGGGGTACAGCAACCTaGCGCGTCAAGGGGCCAGGA +
Preference number: 4 (lower is better)
Translates to: STLIWFYSGSLLRHTEIGRGTAT*RVKGPG
Trigger: TCCTGGCCCCTTGACGCGTCAGGTTGCTGTACCCCT...CCCAATCTCAGTGTGACGAAGAAGACTGCCGGAGTAAAACCATATGAGTGTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000598225.5
CDS-3UTR CCA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATTTAGTCTCCCAGTGTTaGGATCACAGGTGTGACCAT +
Preference number: 4 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHLVSQC*DHRCDH
Trigger: ATGGTCACACCTGTGATCCCAACACTGGGAGACTAA...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCACACAGGTGTCCTTCCTaGATTCAAACTCTACTATTC +
Preference number: 4 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSHRCPS*IQTLLF
Trigger: GAATAGTAGAGTTTGAATTCAGGAAGGACACCTGTG...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATGGGGTTCCAATACCTaGCTAATGTCTTCTTCACTT +
Preference number: 4 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSWGSNT*LMSSSL
Trigger: AAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCA...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATACCAACACATCTCTTTaGGAATGGAAGTCAAGCAGC +
Preference number: 4 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHTNTSL*EWKSSS
Trigger: GCTGCTTGACTTCCATTCTCAAAGAGATGTGTTGGT...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATAGTCTCTCTCCCGTATaGCTTCTTAGATTTCGTCCT +
Preference number: 4 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHSLSPV*LLRFRP
Trigger: AGGACGAAATCTAAGAAGCCATACGGGAGAGAGACT...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000343325.9
CDS-3UTR CCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCAATGGTCTTGATCTCCTaGCCTCGTGATCCGCCCGCC +
Preference number: 4 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISMVLIS*PRDPPA
Trigger: GGCGGGCGGATCACGAGGCCAGGAGATCAAGACCAT...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATGTGAGCCACCGTGTCTaGCCAAGAAATTTAAAAAGC +
Preference number: 4 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHVSHRV*PRNLKS
Trigger: GCTTTTTAAATTTCTTGGCCAGACACGGTGGCTCAC...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCACCTGCCTCAGACTCCTaGGTAGCTGGGACTACAGAC +
Preference number: 4 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISPASDS*VAGTTD
Trigger: GTCTGTAGTCCCAGCTACTCAGGAGTCTGAGGCAGG...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCAATAATGGGTAATATATaGACCACCTTCCACATGAGG +
Preference number: 4 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSIMGNI*TTFHMR
Trigger: CCTCATGTGGAAGGTGGTGCATATATTACCCATTAT...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCAGATAGTACACTCATATaGTTTTACTCCGGCAGTCTT +
Preference number: 4 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSDSTLI*FYSGSL
Trigger: AAGACTGCCGGAGTAAAACCATATGAGTGTACTATC...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCAGGCCTCCCAAGTAGCTaGGACTACAGGCACACCAGA +
Preference number: 4 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISGLPSS*DYRHTR
Trigger: TCTGGTGTGCCTGTAGTCCCAGCTACTTGGGAGGCC...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATAATCCAAACTGTACGTaGATCTTTGATGCGGAGCTT +
Preference number: 4 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHNPNCT*IFDAEL
Trigger: AAGCTCCGCATCAAAGATCCACGTACAGTTTGGATT...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATTTTTCCCCTATAGATaGCAGGTTCTTGAATGTTTC +
Preference number: 4 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSFFPYR*QVLECF
Trigger: GAAACATTCAAGAACCTGGCATCTATAGGGGAAAAA...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000343325.9
CDS-3UTR GCA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCAACTGGGAAAAATGAATaGCTTTCCACATTCTTTGCA +
Preference number: 4 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSTGKNE*LSTFFA
Trigger: TGCAAAGAATGTGGAAAGGCATTCATTTTTCCCAGT...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTATGGTGGCGGGCGCCTaGAGTCCCAGCTACTGGGGA +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATMVAGA*SPSYWG
Trigger: TCCCCAGTAGCTGGGACTGCAGGCGCCCGCCACCAT...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTGGCAGGAGAATGGCGTaGACCCGGGAGGCGGAGCTT +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATGRRMA*TREAEL
Trigger: AAGCTCCGCCTCCCGGGTCCACGCCATTCTCCTGCC...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTGCTGAGGCAGGAGAATaGCGTGGACCCGGGAGGCGG +
Preference number: 4 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICAEAGE*RGPGRR
Trigger: CCGCCTCCCGGGTCCACGCCATTCTCCTGCCTCAGC...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCATGGACTGCCATCACGTaGTCTTGGTTCACTGTAGCC +
Preference number: 4 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISWTAIT*SWFTVA
Trigger: GGCTACAGTGAACCAAGATCACGTGATGGCAGTCCA...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTAGCTACTGGGGAGGCTaGGGCAGGAGAATGGCGTGG +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATSYWGG*GRRMAW
Trigger: CCACGCCATTCTCCTGCCTCAGCCTCCCCAGTAGCT...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR CAA 72 bp AGGATCATCAATATCATTGTCTTCTGCCTCCATGTTTaGTCCCGCCAGAATACGTTCAGGGGCAGTCCTGCA +
Preference number: 4 (lower is better)
Translates to: RIINIIVFCLHV*SRQNTFRGSPA
Trigger: TGCAGGACTGCCCCTGAACGTATTCTGGCGGGACAAAACATGGAGGCAGAAGACAATGATATTGATGATCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCACCAACCATGACAGTCTaGAATAGATGCTTGGGCCAC +
Preference number: 4 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISPTMTV*NRCLGH
Trigger: GTGGCCCAAGCATCTATTTCAGACTGTCATGGTTGG...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTGGCCTCCCAAGTAGCTaGGACTACAGGCACACCAGA +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATGLPSS*DYRHTR
Trigger: TCTGGTGTGCCTGTAGTCCCAGCTACTTGGGAGGCC...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTCAGGCTGGATTGCAGTaGCACGATCTCGGCTCACTG +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATQAGLQ*HDLGSL
Trigger: CAGTGAGCCGAGATCGTGCCACTGCAATCCAGCCTG...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp AGTACACTCATATGGTTTTACTCCGGCAGTCTTCTTCGTCACACTGAGATTGGGAAAGCCACTGAGTCCTaGAATCCTAGCACTTTGGGA +
Preference number: 4 (lower is better)
Translates to: STLIWFYSGSLLRHTEIGKATES*NPSTLG
Trigger: TCCCAAAGTGCTAGGATTCCAGGACTCAGTGGCTTT...CCCAATCTCAGTGTGACGAAGAAGACTGCCGGAGTAAAACCATATGAGTGTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000598225.5
CDS-3UTR TCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTCCTGCCTCAGACTCCTaGGTAGCTGGGACTACAGAC +
Preference number: 4 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICPASDS*VAGTTD
Trigger: GTCTGTAGTCCCAGCTACTCAGGAGTCTGAGGCAGG...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCAACCAACACATCTCTTTaGGAATGGAAGTCAAGCAGC +
Preference number: 4 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISTNTSL*EWKSSS
Trigger: GCTGCTTGACTTCCATTCTCAAAGAGATGTGTTGGT...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTGGCCTCCTGGGTTTATaGCATTCTCCTGCCTCAGCC +
Preference number: 4 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICGLLGL*HSPASA
Trigger: GGCTGAGGCAGGAGAATGGCATAAACCCAGGAGGCC...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTATGGTCTTGATCTCCTaGCCTCGTGATCCGCCCGCC +
Preference number: 4 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFIMVLIS*PRDPPA
Trigger: GGCGGGCGGATCACGAGGCCAGGAGATCAAGACCAT...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTATCCTCAAAAGCCACTaGGTCCATTTTCCGGCCTCG +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATILKSH*VHFPAS
Trigger: CGAGGCCGGAAAATGGACTCAGTGGCTTTTGAGGAT...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTTGGACTGCCATCACGTaGTCTTGGTTCACTGTAGCC +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATWTAIT*SWFTVA
Trigger: GGCTACAGTGAACCAAGATCACGTGATGGCAGTCCA...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCACACAGGTGTCCTTCCTaGATTCAAACTCTACTATTC +
Preference number: 4 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISHRCPS*IQTLLF
Trigger: GAATAGTAGAGTTTGAATTCAGGAAGGACACCTGTG...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCATGGGGTTCCAATACCTaGCTAATGTCTTCTTCACTT +
Preference number: 4 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISWGSNT*LMSSSL
Trigger: AAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCA...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTCTCAGGCAATCCTCCTaGCTCAGCCTCCCATGTAGA +
Preference number: 4 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICLRQSS*LSLPCR
Trigger: TCTACATGGGAGGCTGAGGCAGGAGGATTGCCTGAG...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTAGAGTCTCGCTCTGTTaGCCGGATCTCAGCTCACTG +
Preference number: 4 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICRVSLC*PDLSSL
Trigger: CAGTGAGCTGAGATCCGGCCAACAGAGCGAGACTCT...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTATCCTCAAAAGCCACTaGGTCCATTTTCCGGCCTCG +
Preference number: 4 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICILKSH*VHFPAS
Trigger: CGAGGCCGGAAAATGGACTCAGTGGCTTTTGAGGAT...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGTTGGGATCACAGGTGTaGCCATGCCCAGCTGTGTTG +
Preference number: 4 (lower is better)
Translates to: ILVTVCQYSTISLFREQLLGSQV*PCPAVL
Trigger: CAACACAGCTGGGCATGGTCACACCTGTGATCCCAA...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTTTTATGCCATTCTCCTaGCTCAGCCTCCCAAGTAGC +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATFMPFS*LSLPSS
Trigger: GCTACTTGGGAGGCTGAGGCAGGAGAATGGCATAAA...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTTTCACACCATTCTCCTaGCTCAGACTCCTGAGTAGC +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATFTPFS*LRLLSS
Trigger: GCTACTCAGGAGTCTGAGGCAGGAGAATGGTGTGAA...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
3UTR CAA 72 bp AAAATCCAAACTGTACGTGGATCTTTGATGCGGAGCTaGTGGAGACAACTGTGGAAACCAACACATCTCTTT +
Preference number: 4 (lower is better)
Translates to: KIQTVRGSLMRS*WRQLWKPTHLF
Trigger: AAAGAGATGTGTTGGTTTCCACAGTTGTCTCCACAAGCTCCGCATCAAAGATCCACGTACAGTTTGGATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGCCTCCCAGGTTCAAATaGTTCTCCTGCTTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: ILVTVCQYSTISLFREQLPPRFK*FSCFSL
Trigger: GAGGCTGAAGCAGGAGAATCATTTGAACCTGGGAGG...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGCTGTACGTGGATCTTTaGTGCGGAGCTTGTGGAGAC +
Preference number: 4 (lower is better)
Translates to: ILVTVCQYSTISLFREQLLYVDL*CGACGD
Trigger: GTCTCCACAAGCTCCGCATCAAAGATCCACGTACAG...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTTGCTTGGGCCACACATaGAGGCTAGAAGGAAAATCC +
Preference number: 4 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICCLGHT*RLEGKS
Trigger: GGATTTTCCTTCTAGCCTTCATGTGTGGCCCAAGCA...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTTTAGTCTCCCAGTGTTaGGATCACAGGTGTGACCAT +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATLVSQC*DHRCDH
Trigger: ATGGTCACACCTGTGATCCCAACACTGGGAGACTAA...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTCCTGGCTTAACACGGTaGAACCCCATCTCTACTAAA +
Preference number: 4 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICPGLTR*NPISTK
Trigger: TTTAGTAGAGATGGGGTTTCACCGTGTTAAGCCAGG...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTATCAAGCAATCCTACTaGCTTAGTCTCCCAGTGTTG +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATIKQSY*LSLPVL
Trigger: CAACACTGGGAGACTAAGGCAGTAGGATTGCTTGAT...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTGGAATTACAGGTGCATaGCACCACGCTCAGGTAATT +
Preference number: 4 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICGITGA*HHAQVI
Trigger: AATTACCTGAGCGTGGTGGCATGCACCTGTAATTCC...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTTTCACACCATTCTCCTaGCTCAGACTCCTGAGTAGC +
Preference number: 4 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFIFTPFS*LRLLSS
Trigger: GCTACTCAGGAGTCTGAGGCAGGAGAATGGTGTGAA...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTGTGAGCCACCGTGTCTaGCCAAGAAATTTAAAAAGC +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATVSHRV*PRNLKS
Trigger: GCTTTTTAAATTTCTTGGCCAGACACGGTGGCTCAC...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTGGTTTCCCAAAGTGCTaGAATTACAAAGGAGTGAGC +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATGFPKC*NYKGVS
Trigger: GCTCACTCCTTTGTAATTCCAGCACTTTGGGAAACC...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGGTGTCTAGTAAGGGATaGGAGACGCATGAAGGCTTT +
Preference number: 4 (lower is better)
Translates to: ILVTVCQYSTISLFREQLVSSKG*ETHEGF
Trigger: AAAGCCTTCATGCGTCTCTCATCCCTTACTAGACAC...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGAGCTCGTATCCAGTGTaGGACCTCATGTGTCTAGTA +
Preference number: 4 (lower is better)
Translates to: ILVTVCQYSTISLFREQLSSYPV*DLMCLV
Trigger: TACTAGACACATGAGGTCTCACACTGGATACGAGCT...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTGAACAATGCCAACCATaGCAGTCTGAAATAGATGCT +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATEQCQP*QSEIDA
Trigger: AGCATCTATTTCAGACTGTCATGGTTGGCATTGTTC...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTAATATCATTGTCTTCTaGCTCCATGTTTTGTCCCGC +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATNIIVF*LHVLSR
Trigger: GCGGGACAAAACATGGAGGCAGAAGACAATGATATT...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTTCCATGAACATAGCTTaGAGGACTAGAAGTTGCTCT +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATSMNIA*RTRSCS
Trigger: AGAGCAACTTCTAGTCCTGCAAGCTATGTTCATGGA...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGGGAATTACAGGTGCATaGCACCACGCTCAGGTAATT +
Preference number: 4 (lower is better)
Translates to: ILVTVCQYSTISLFREQLGITGA*HHAQVI
Trigger: AATTACCTGAGCGTGGTGGCATGCACCTGTAATTCC...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTAGGTGCCCTCCAACATaGCCAGCTAATTTTTGTATT +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATRCPPT*PANFCI
Trigger: AATACAAAAATTAGCTGGGCATGTTGGAGGGCACCT...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTGTGTACTCGAAAGGCTaGGCGTGCACTGAAAGATTT +
Preference number: 4 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFIVYSKG*ACTERF
Trigger: AAATCTTTCAGTGCACGCCCAGCCTTTCGAGTACAC...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGGTGTACTCGAAAGGCTaGGCGTGCACTGAAAGATTT +
Preference number: 4 (lower is better)
Translates to: ILVTVCQYSTISLFREQLVYSKG*ACTERF
Trigger: AAATCTTTCAGTGCACGCCCAGCCTTTCGAGTACAC...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTTTGATGCGGAGCTTGTaGAGACAACTGTGGAAACCA +
Preference number: 4 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFILMRSL*RQLWKP
Trigger: TGGTTTCCACAGTTGTCTCCACAAGCTCCGCATCAA...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTAATCCAAACTGTACGTaGATCTTTGATGCGGAGCTT +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATNPNCT*IFDAEL
Trigger: AAGCTCCGCATCAAAGATCCACGTACAGTTTGGATT...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTTGGTCCATTGCTGACTaGAACATGATTATGTGGTAC +
Preference number: 4 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICWSIAD*NMIMWY
Trigger: GTACCACATAATCATGTTTCAGTCAGCAATGGACCA...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTGAACAATGCCAACCATaGCAGTCTGAAATAGATGCT +
Preference number: 4 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICEQCQP*QSEIDA
Trigger: AGCATCTATTTCAGACTGTCATGGTTGGCATTGTTC...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTTCCATGAACATAGCTTaGAGGACTAGAAGTTGCTCT +
Preference number: 4 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICSMNIA*RTRSCS
Trigger: AGAGCAACTTCTAGTCCTGCAAGCTATGTTCATGGA...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTATAATGGGTAATATATaGACCACCTTCCACATGAGG +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATIMGNI*TTFHMR
Trigger: CCTCATGTGGAAGGTGGTGCATATATTACCCATTAT...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CCA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTGGTTTCCCAAAGTGCTaGAATTACAAAGGAGTGAGC +
Preference number: 4 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFIGFPKC*NYKGVS
Trigger: GCTCACTCCTTTGTAATTCCAGCACTTTGGGAAACC...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTGTACCTGACTATACATaGATCATCTTGTATCTCGCT +
Preference number: 4 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICVPDYT*IILYLA
Trigger: AGCGAGATACAAGATGATTCATGTATAGTCAGGTAC...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTACTGGGAAAAATGAATaGCTTTCCACATTCTTTGCA +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATTGKNE*LSTFFA
Trigger: TGCAAAGAATGTGGAAAGGCATTCATTTTTCCCAGT...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTAATATCATTGTCTTCTaGCTCCATGTTTTGTCCCGC +
Preference number: 4 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFINIIVF*LHVLSR
Trigger: GCGGGACAAAACATGGAGGCAGAAGACAATGATATT...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGCTTGGTTTCCCAAAGTaGTGGAATTACAAAGGAGTG +
Preference number: 4 (lower is better)
Translates to: ILVTVCQYSTISLFREQLLGFPK*WNYKGV
Trigger: CACTCCTTTGTAATTCCAGCACTTTGGGAAACCAAG...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTAGGTGCCCTCCAACATaGCCAGCTAATTTTTGTATT +
Preference number: 4 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFIRCPPT*PANFCI
Trigger: AATACAAAAATTAGCTGGGCATGTTGGAGGGCACCT...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGTGTCTTCTTCACTTCTaGCTGGCAAATCTCATGCAA +
Preference number: 4 (lower is better)
Translates to: ILVTVCQYSTISLFREQLCLLHF*LANLMQ
Trigger: TTGCATGAGATTTGCCAGGCAGAAGTGAAGAAGACA...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTTGTCTTCTTCACTTCTaGCTGGCAAATCTCATGCAA +
Preference number: 4 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFICLLHF*LANLMQ
Trigger: TTGCATGAGATTTGCCAGGCAGAAGTGAAGAAGACA...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR GCA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTTATGGCTTCTATAGATaGCAGGTTCTTGAATGTTTC +
Preference number: 4 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATYGFYR*QVLECF
Trigger: GAAACATTCAAGAACCTGGCATCTATAGAAGCCATA...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000446165.2
CDS-3UTR CCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTGATAGTACACTCATATaGTTTTACTCCGGCAGTCTT +
Preference number: 4 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICDSTLI*FYSGSL
Trigger: AAGACTGCCGGAGTAAAACCATATGAGTGTACTATC...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGGTACCTGACTATACATaGATCATCTTGTATCTCGCT +
Preference number: 4 (lower is better)
Translates to: ILVTVCQYSTISLFREQLVPDYT*IILYLA
Trigger: AGCGAGATACAAGATGATTCATGTATAGTCAGGTAC...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR TCA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTGTACTTTTATACAACTaGAAGTGCAGCACGTTTACA +
Preference number: 4 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICVLLYN*KCSTFT
Trigger: TGTAAACGTGCTGCACTTTCAGTTGTATAAAAGTAC...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATCAGAGTCTCGCTCTGTaGGCCGGATCTCAGCTCACT +
Preference number: 5 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHQSLAL*AGSQLT
Trigger: AGTGAGCTGAGATCCGGCCAACAGAGCGAGACTCTG...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCACAGGGTCTCACTAGGTaGACCAGAGTAGTCCTGGCA +
Preference number: 5 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSQGLTR*TRVVLA
Trigger: TGCCAGGACTACTCTGGTCAACCTAGTGAGACCCTG...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATTAGCCAGGATGGTCTaGATCTCCTGGCCTCGTGAT +
Preference number: 5 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSLARMV*ISWPRD
Trigger: ATCACGAGGCCAGGAGATCAAGACCATCCTGGCTAA...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATCAGGGTCTCACTAGGTaGACCAGAGTAGTCCTGGCA +
Preference number: 5 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHQGLTR*TRVVLA
Trigger: TGCCAGGACTACTCTGGTCAACCTAGTGAGACCCTG...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATTGGTTCACTGTAGCCTaGAACTCCTGGGCTCAGGCA +
Preference number: 5 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHWFTVA*NSWAQA
Trigger: TGCCTGAGCCCAGGAGTTCAAGGCTACAGTGAACCA...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp AGTACACTCATATGGTTTTACTCCGGCAGTCTTCTTCGTCACACTGAGATTGGGGCGGGTGTCCCGGTGTaGTCCCTAAGGTTCACGGAG +
Preference number: 5 (lower is better)
Translates to: STLIWFYSGSLLRHTEIGAGVPV*SLRFTE
Trigger: CTCCGTGAACCTTAGGGACAACACCGGGACACCCGC...CCCAATCTCAGTGTGACGAAGAAGACTGCCGGAGTAAAACCATATGAGTGTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000598225.5
CDS-3UTR CAA 90 bp CCGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCAAGTCCGCTCATGTCTTaGAAAGGGCTGGTGATATAT +
Preference number: 5 (lower is better)
Translates to: PPEYVQGQSCTWSRHRLSSPLMS*KGLVIY
Trigger: ATATATCACCAGCCCTTTCAAAGACATGAGCGGACT...TGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATTCTTTGATGCGGAGCTaGTGGAGACAACTGTGGAAA +
Preference number: 5 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHSLMRS*WRQLWK
Trigger: TTTCCACAGTTGTCTCCACAAGCTCCGCATCAAAGA...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp CGCCAGAATACGTTCAGGGGCAGTCCTGCACATGGAGCCGTCATCGCCTATCATAGTCCAGAGATGTACTaGAAGAATGAGCCAGTGATA +
Preference number: 5 (lower is better)
Translates to: RQNTFRGSPAHGAVIAYHSPEMY*KNEPVI
Trigger: TATCACTGGCTCATTCTTCAAGTACATCTCTGGACT...ATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTGCTGCCCAGGCTGGATaGCAGTGGCACGATCTCGGC +
Preference number: 5 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICAAQAG*QWHDLG
Trigger: GCCGAGATCGTGCCACTGCAATCCAGCCTGGGCAGC...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTGCGGGTGTCCCGGTGTaGTCCCTAAGGTTCACGGAG +
Preference number: 5 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICAGVPV*SLRFTE
Trigger: CTCCGTGAACCTTAGGGACAACACCGGGACACCCGC...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp GTGGGGTTCCAATACCTGACTAATGTCTTCTTCACTTCTGCCTGGCAAATCTCAAGTGATCTGCTTGCCTaGGTTTCCCAAAGTGCTGGA +
Preference number: 5 (lower is better)
Translates to: VGFQYLTNVFFTSAWQISSDLLA*VSQSAG
Trigger: TCCAGCACTTTGGGAAACCAAGGCAAGCAGATCACT...TGAGATTTGCCAGGCAGAAGTGAAGAAGACATTAGTCAGGTATTGGAACCCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTGCTGCCCAGGCTGGATaGCAGTGGCACGATCTCGGC +
Preference number: 5 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFIAAQAG*QWHDLG
Trigger: GCCGAGATCGTGCCACTGCAATCCAGCCTGGGCAGC...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGGCGGGTGTCCCGGTGTaGTCCCTAAGGTTCACGGAG +
Preference number: 5 (lower is better)
Translates to: ILVTVCQYSTISLFREQLAGVPV*SLRFTE
Trigger: CTCCGTGAACCTTAGGGACAACACCGGGACACCCGC...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTAGCGATTCTCCTGCTTaGGCCTCCCAAGTAGCTGGG +
Preference number: 5 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATSDSPA*ASQVAG
Trigger: CCCAGCTACTTGGGAGGCCAAAGCAGGAGAATCGCT...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTTGGTTCACTGTAGCCTaGAACTCCTGGGCTCAGGCA +
Preference number: 5 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICWFTVA*NSWAQA
Trigger: TGCCTGAGCCCAGGAGTTCAAGGCTACAGTGAACCA...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp CAGCACCATAAACACTTAAATAATGTGCTGCACTATGGTGTTACTACTGCTACTACTGTACGTGGATCTTaGATGCGGAGCTTGTGGAGA +
Preference number: 5 (lower is better)
Translates to: QHHKHLNNVLHYGVTTATTVRGS*MRSLWR
Trigger: TCTCCACAAGCTCCGCATCAAAGATCCACGTACAGT...AGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTTTAGCCAGGATGGTCTaGATCTCCTGGCCTCGTGAT +
Preference number: 5 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFILARMV*ISWPRD
Trigger: ATCACGAGGCCAGGAGATCAAGACCATCCTGGCTAA...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTAGTGATCTGCTTGCCTaGGTTTCCCAAAGTGCTGGA +
Preference number: 5 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICSDLLA*VSQSAG
Trigger: TCCAGCACTTTGGGAAACCAAGGCAAGCAGATCACT...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGCAGGGTTTCATCATGTaGACCAGGCTGGTCTTGAAC +
Preference number: 5 (lower is better)
Translates to: ILVTVCQYSTISLFREQLQGFIM*TRLVLN
Trigger: GTTCAAGACCAGCCTGGTCAACATGATGAAACCCTG...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTTCTTTGATGCGGAGCTaGTGGAGACAACTGTGGAAA +
Preference number: 5 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICSLMRS*WRQLWK
Trigger: TTTCCACAGTTGTCTCCACAAGCTCCGCATCAAAGA...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp GCCAGTAGGAAAAATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTACTGTACGTGGATCTTaGATGCGGAGCTTGTGGAGA +
Preference number: 5 (lower is better)
Translates to: ASRKNPSYSVSVFNNLFITVRGS*MRSLWR
Trigger: TCTCCACAAGCTCCGCATCAAAGATCCACGTACAGT...AATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGATTTTTCCTACTGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTAGTCCGCTCATGTCTTaGAAAGGGCTGGTGATATAT +
Preference number: 5 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICSPLMS*KGLVIY
Trigger: ATATATCACCAGCCCTTTCAAAGACATGAGCGGACT...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp GTGAATTTTCTGGAGCATTTTACAGGCAGAGATTGCTTAATCATGGGTATATGTGGATCATCAATATCATaGTCTTCTGCCTCCATGTTT +
Preference number: 5 (lower is better)
Translates to: VNFLEHFTGRDCLIMGICGSSIS*SSASMF
Trigger: AAACATGGAGGCAGAAGACAATGATATTGATGATCC...ACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGAGTCCAGAGATGTACTaGAAGAATGAGCCAGTGATA +
Preference number: 5 (lower is better)
Translates to: ILVTVCQYSTISLFREQLSPEMY*KNEPVI
Trigger: TATCACTGGCTCATTCTTCAAGTACATCTCTGGACT...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS-3UTR CAA 90 bp ATCCTAGTTACAGTGTGTCAGTATTCAACAATCTCTTTATTCAGAGAACAACTGTTTTACAGGCAGAGATaGCTTAATCATGGGTATATG +
Preference number: 5 (lower is better)
Translates to: ILVTVCQYSTISLFREQLFYRQR*LNHGYM
Trigger: CATATACCCATGATTAAGCAATCTCTGCCTGTAAAA...CAGTTGTTCTCTGAATAAAGAGATTGTTGAATACTGACACACTGTAACTAGGAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343325.9
ENST00000446165.2
CDS CAA 90 bp CACAGCCAGACCCCATCATTTTCCGGCCTCGCGGGTGTCCCGGTGTaGTCCCTAAGGTTCACGGAGCCAGCGCAGGGTACAGCGCATCCG +
Preference number: 6 (lower is better)
Translates to: HSQTPSFSGLAGVPV*SLRFTEPAQGTAHP
Trigger: CGGATGCGCTGTACCCTGCGCTGGCTCCGTGAACCTTAGGGACAACACCGGGACACCCGCGAGGCCGGAAAATGATGGGGTCTGGCTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000498389.1
ENST00000597691.5
ENST00000598225.5
CDS TCA 72 bp TCCTCAAAAGCCACTGAGTCTATTGCTTTCAGAAAATaGGAATGTTGGGCCGGTAATAGTAGCTCATGCCTG +
Preference number: 6 (lower is better)
Translates to: SSKATESIAFRK*ECWAGNSSSCL
Trigger: CAGGCATGAGCTACTATTACCGGCCCAACATTCTCATTTTCTGAAAGCAATAGACTCAGTGGCTTTTGAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000597691.5