RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZNF671 (Homo sapiens)

Ensembl gene IDs: ENSG00000083814

Ensembl transcript IDs: ENST00000317398.10, ENST00000594803.1, ENST00000596939.1, ENST00000599961.1, ENST00000600125.5, ENST00000601584.1

Found 281 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CATTACTCTTGGTACATCCACCACCAAAGCATTCCTGGAATCCACTaGAGTAGCCTCCTTACCGGTCTCCTCGTATCCATCCTCGCAGTC +
Preference number: 1 (lower is better)
Translates to: HYSWYIHHQSIPGIH*SSLLTGLLVSILAV
Trigger: GACTGCGAGGATGGATACGAGGAGACCGGTAAGGAGGCTACTGCAGTGGATTCCAGGAATGCTTTGGTGGTGGATGTACCAAGAGTAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000600125.5
3UTR TCA 90 bp CGTCCTTCTATTCAAAACCCTCAGTTAATCTCAACGCCCTCAGAATaGAGCGACAACTTCTCAGCCTGCCATTCCAGTCACAGTTCCTCA +
Preference number: 1 (lower is better)
Translates to: RPSIQNPQLISTPSE*SDNFSACHSSHSSS
Trigger: TGAGGAACTGTGACTGGAATGGCAGGCTGAGAAGTTGTCGCTTCATTCTGAGGGCGTTGAGATTAACTGAGGGTTTTGAATAGAAGGACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000600125.5
3UTR TCA 90 bp AGCTGGGTGACTTGGATATTGGATATATCCATAACGAGCATCATATaGAATCAATCAACACAGGTAAGTCTCTGCAGGCTATTTGCAGAA +
Preference number: 1 (lower is better)
Translates to: SWVTWILDISITSII*NQSTQVSLCRLFAE
Trigger: TTCTGCAAATAGCCTGCAGAGACTTACCTGTGTTGATTGATTTCATATGATGCTCGTTATGGATATATCCAATATCCAAGTCACCCAGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
3UTR-3UTR CCA 90 bp GAGGTAGTGAGCCTCTGGAGGTCATACCATGGGGGAGTGCCAATGAAGGGCCAGACGCTGTGTGGCCACTaGCCCTGGAAACAAACACTG +
Preference number: 2 (lower is better)
Translates to: EVVSLWRSYHGGVPMKGQTLCGH*PWKQTL
Trigger: CAGTGTTTGTTTCCAGGGCCAGTGGCCACACAGCGT...CTGGCCCTTCATTGGCACTCCCCCATGGTATGACCTCCAGAGGCTCACTACCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000596939.1
3UTR-3UTR TCA 90 bp GGGAGAGAAGAGAGGTCTGCCCGTCACAAGCATGCTGGGGTAAATGGTAAACGCGGCCTGTGTCCGGTGTaGAATTCCCAATGGCGGGTA +
Preference number: 2 (lower is better)
Translates to: GREERSARHKHAGVNGKRGLCPV*NSQWRV
Trigger: TACCCGCCATTGGGAATTTCACACCGGACACAGGCC...GCGTTTACCATTTACCCCAGCATGCTTGTGACGGGCAGACCTCTCTTCTCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
3UTR-3UTR TCA 90 bp TCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTGCTGAGTTCCACTCTAGGGTaGGCTGTTGGGCTGAACAGA +
Preference number: 2 (lower is better)
Translates to: SQWRVRFSLQGKAFLHLLSSTLG*AVGLNR
Trigger: TCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACT...CAGCAGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR CCA 90 bp ATGGTTCCCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGATGGTTCCCTCCCAATaGCTGCTCCCAGAGTTCCAC +
Preference number: 2 (lower is better)
Translates to: MVPSQWLLPEFHSRVSCWMVPSQ*LLPEFH
Trigger: GTGGAACTCTGGGAGCAGCCATTGGGAGGGAACCAT...CCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGGAACCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR TCA 90 bp ATGGTTCCCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGCATATGTCACATGGGTaGGACTCCAGCTCTGCCATG +
Preference number: 2 (lower is better)
Translates to: MVPSQWLLPEFHSRVSCWHMSHG*DSSSAM
Trigger: CATGGCAGAGCTGGAGTCTCACCCATGTGACATATG...CCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGGAACCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR TCA 90 bp CTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGCACAGTCTTTCACCCGTGTaGACTCGCCTGTGCTCAATC +
Preference number: 2 (lower is better)
Translates to: LLPEFHSRVSCWAEQRQHSLSPV*TRLCSI
Trigger: GATTGAGCACAGGCGAGTTCACACGGGTGAAAGACT...GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR TCA 90 bp CTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGCACTCAACGCCCTCAGAATaGAGCGACAACTTCTCAGCC +
Preference number: 2 (lower is better)
Translates to: LLPEFHSRVSCWAEQRQHSTPSE*SDNFSA
Trigger: GGCTGAGAAGTTGTCGCTTCATTCTGAGGGCGTTGA...GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000600125.5
3UTR-3UTR CCA 90 bp CCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGTAAGTCAGGGGCATTaGCCTAAGACTTTCCCCCAC +
Preference number: 2 (lower is better)
Translates to: PVSGVKFPMAGKVQPPGEVSQGH*PKTFPH
Trigger: GTGGGGGAAAGTCTTAGGCCAATGCCCCTGACTTAC...TTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR CCA 90 bp AGGCCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGGGCCTCTCTTTCTGTaGCTGAAGTCATATCCACCT +
Preference number: 2 (lower is better)
Translates to: RPVSGVKFPMAGKVQPPGGPLFL*LKSYPP
Trigger: AGGTGGATATGACTTCAGCCACAGAAAGAGAGGCCC...CCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGGCCT
56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR TCA 90 bp CCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAACTCTCTTTCTGTGGCTaGAGTCATATCCACCTGGTC +
Preference number: 2 (lower is better)
Translates to: PVSGVKFPMAGKVQPPGELSFCG*SHIHLV
Trigger: GACCAGGTGGATATGACTTCAGCCACAGAAAGAGAG...TTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR TCA 90 bp ATGGTTCCCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGCATTCACCACACCTGTaGTACCTCTGTCCCATGAGA +
Preference number: 2 (lower is better)
Translates to: MVPSQWLLPEFHSRVSCWHSPHL*YLCPMR
Trigger: TCTCATGGGACAGAGGTATCACAGGTGTGGTGAATG...CCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGGAACCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR GCA 90 bp GGGAGAGAAGAGAGGTCTGCCCGTCACAAGCATGCTGGGGTAAATGGTAAACGCTTCCCTCCCAATGGCTaGTCCCAGAGTTCCACTCTA +
Preference number: 2 (lower is better)
Translates to: GREERSARHKHAGVNGKRFPPNG*SQSSTL
Trigger: TAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGGAA...GCGTTTACCATTTACCCCAGCATGCTTGTGACGGGCAGACCTCTCTTCTCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
3UTR-3UTR GCA 90 bp GTTGGGCTGAACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGAGAGAAGAGAGGTCTaGCCGTCACAAGCATGCTGG +
Preference number: 2 (lower is better)
Translates to: VGLNRDSTLLRLLRPVSGERREV*PSQACW
Trigger: CCAGCATGCTTGTGACGGGCAGACCTCTCTTCTCTC...ACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTTCAGCCCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
3UTR-3UTR GCA 90 bp ATCCACTGCAGTAGCCTCCTTACCGGTCTCCTCGTATCCATCCTCGCAGTCCCCTCATCCTCCACTCCATaGCAACAACCAGGTCTAAGT +
Preference number: 2 (lower is better)
Translates to: IHCSSLLTGLLVSILAVPSSSTP*QQPGLS
Trigger: ACTTAGACCTGGTTGTTGGCATGGAGTGGAGGATGA...GGGGACTGCGAGGATGGATACGAGGAGACCGGTAAGGAGGCTACTGCAGTGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000600125.5
3UTR-3UTR GCA 90 bp CCCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAATCATCCTCCACTCCATaGCAACAACCAGGTCTAAGT +
Preference number: 2 (lower is better)
Translates to: PSQWLLPEFHSRVSCWAESSSTP*QQPGLS
Trigger: ACTTAGACCTGGTTGTTGGCATGGAGTGGAGGATGA...TTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR CCA 90 bp CTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGCACGGGCCTCTCTTTCTGTaGCTGAAGTCATATCCACCT +
Preference number: 2 (lower is better)
Translates to: LLPEFHSRVSCWAEQRQHGPLFL*LKSYPP
Trigger: AGGTGGATATGACTTCAGCCACAGAAAGAGAGGCCC...GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR CCA 90 bp CTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGCACCCATTGGGCTGGTTCTaGTGCTGGTCAAAGTCTGTA +
Preference number: 2 (lower is better)
Translates to: LLPEFHSRVSCWAEQRQHPLGWF*CWSKSV
Trigger: TACAGACTTTGACCAGCACCAGAACCAGCCCAATGG...GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR CCA 90 bp TCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTGCTGGAAGAAGGCCAGATGTaGCTGAAAAGTCTCTCCTAC +
Preference number: 2 (lower is better)
Translates to: SQWRVRFSLQGKAFLHLLEEGQM*LKSLSY
Trigger: GTAGGAGAGACTTTTCAGCCACATCTGGCCTTCTTC...CAGCAGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR TCA 90 bp CAGCTTTTCACAGAGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGGGCCTGTGTCCGGTGTaGAATTCCCAATGGCGGGTA +
Preference number: 2 (lower is better)
Translates to: QLFTESLPSFLGKSFPPLGLCPV*NSQWRV
Trigger: TACCCGCCATTGGGAATTTCACACCGGACACAGGCC...CAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACTCTGTGAAAAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR TCA 90 bp ACAGAGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGGGCTGGTTCAGTTCCACTCTAGGGTaGGCTGTTGGGCTGAACAGA +
Preference number: 2 (lower is better)
Translates to: TESLPSFLGKSFPPLGWFSSTLG*AVGLNR
Trigger: TCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACT...GAACCAGCCCAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACTCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR CCA 90 bp GTTGGGCTGAACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGCCACATATGTCACATaGGTGAGACTCCAGCTCTGC +
Preference number: 2 (lower is better)
Translates to: VGLNRDSTLLRLLRPVSGATYVT*VRLQLC
Trigger: GCAGAGCTGGAGTCTCACCCATGTGACATATGTGGC...ACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTTCAGCCCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR CCA 90 bp CTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGCACTCTGCCCTCCTTCCTTaGGAAAAGTTTCCCTCCATT +
Preference number: 2 (lower is better)
Translates to: LLPEFHSRVSCWAEQRQHSALLP*EKFPSI
Trigger: AATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGA...GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR TCA 90 bp AATGGTAAACGCAGTATGATTCTGCCAGATGGTAGGAGCAGATGGCTCCTGCCCCATATGTCACATGGGTaGGACTCCAGCTCTGCCATG +
Preference number: 2 (lower is better)
Translates to: NGKRSMILPDGRSRWLLPHMSHG*DSSSAM
Trigger: CATGGCAGAGCTGGAGTCTCACCCATGTGACATATG...GGGCAGGAGCCATCTGCTCCTACCATCTGGCAGAATCATACTGCGTTTACCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000600125.5
3UTR-3UTR TCA 90 bp AATGGTAAACGCAGTATGATTCTGCCAGATGGTAGGAGCAGATGGCTCCTGCCCGTGTCTGTTTCCGGATaGATTCTCTCCCGCACTCAC +
Preference number: 2 (lower is better)
Translates to: NGKRSMILPDGRSRWLLPVSVSG*ILSRTH
Trigger: GTGAGTGCGGGAGAGAATTCATCCGGAAACAGACAC...GGGCAGGAGCCATCTGCTCCTACCATCTGGCAGAATCATACTGCGTTTACCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000600125.5
3UTR-3UTR TCA 90 bp ATCCACTGCAGTAGCCTCCTTACCGGTCTCCTCGTATCCATCCTCGCAGTCCCCACTAATGTTCTCCCCTaGGCAAATTTCGAGACACTT +
Preference number: 2 (lower is better)
Translates to: IHCSSLLTGLLVSILAVPTNVLP*ANFETL
Trigger: AAGTGTCTCGAAATTTGCTCAGGGGAGAACATTAGT...GGGGACTGCGAGGATGGATACGAGGAGACCGGTAAGGAGGCTACTGCAGTGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000600125.5
3UTR-3UTR GCA 90 bp CAGCTTTTCACAGAGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGGTGAGACTCCAGCTCTaGCATGAGAGTCCTGACCTC +
Preference number: 2 (lower is better)
Translates to: QLFTESLPSFLGKSFPPLVRLQL*HESPDL
Trigger: GAGGTCAGGACTCTCATGGCAGAGCTGGAGTCTCAC...CAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACTCTGTGAAAAGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR GCA 90 bp GTTGGGCTGAACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTCACAAGTATGGTTTCTaGCTGGCTTTTCCCCCATGG +
Preference number: 2 (lower is better)
Translates to: VGLNRDSTLLRLLRPVSGHKYGF*LAFPPW
Trigger: CCATGGGGGAAAAGCCAGGCAGAAACCATACTTGTG...ACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTTCAGCCCAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR CCA 90 bp TGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGAGTATGGTTTCTGCCTaGCTTTTCCCCCATGGTATT +
Preference number: 2 (lower is better)
Translates to: WLLPEFHSRVSCWAEQRQSMVSA*LFPHGI
Trigger: AATACCATGGGGGAAAAGCCAGGCAGAAACCATACT...CTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR CCA 90 bp ATGGTTCCCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGAGTATGGTTTCTGCCTaGCTTTTCCCCCATGGTATT +
Preference number: 2 (lower is better)
Translates to: MVPSQWLLPEFHSRVSCWSMVSA*LFPHGI
Trigger: AATACCATGGGGGAAAAGCCAGGCAGAAACCATACT...CCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGGAACCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR CCA 90 bp ACAGAGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGGGCTGGTTCTGCCCCACACAAGTATaGTTTCTGCCTGGCTTTTCC +
Preference number: 2 (lower is better)
Translates to: TESLPSFLGKSFPPLGWFCPTQV*FLPGFS
Trigger: GGAAAAGCCAGGCAGAAACCATACTTGTGTGGGGCA...GAACCAGCCCAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR TCA 90 bp AACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGTGAAATTCGGTTGGGTCTTTGAGTaGAGGCTTTCCCGCACTTGC +
Preference number: 2 (lower is better)
Translates to: NRDSTLLRLLRPVSGVKFGWVFE*RLSRTC
Trigger: GCAAGTGCGGGAAAGCCTTCACTCAAAGACCCAACC...GAATTTCACACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR TCA 90 bp ACAGAGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGGGCTGGTTCCTCGCTCTAGTTTCATaGCTGCACGTGATCTGGAAA +
Preference number: 2 (lower is better)
Translates to: TESLPSFLGKSFPPLGWFLALVS*LHVIWK
Trigger: TTTCCAGATCACGTGCAGTCATGAAACTAGAGCGAG...GAACCAGCCCAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000600125.5
3UTR-3UTR CCA 90 bp CAGCTTTTCACAGAGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGTCTAGGGTGAGCTGTTaGGCTGAACAGAGACAGCAC +
Preference number: 2 (lower is better)
Translates to: QLFTESLPSFLGKSFPPLSRVSC*AEQRQH
Trigger: GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGA...CAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACTCTGTGAAAAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR TCA 90 bp GTTGGGCTGAACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGGTCAAAGTCTGTACTaGACCAGAATTGCTTTCCAC +
Preference number: 2 (lower is better)
Translates to: VGLNRDSTLLRLLRPVSGGQSLY*TRIAFH
Trigger: GTGGAAAGCAATTCTGGTTCAGTACAGACTTTGACC...ACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTTCAGCCCAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR GCA 90 bp CTGCACTCATTAACTACTGCTAGTTCCCCACCATATAGTAAGTCAGGGGCATTGGTGAGACTCCAGCTCTaGCATGAGAGTCCTGACCTC +
Preference number: 2 (lower is better)
Translates to: LHSLTTASSPPYSKSGALVRLQL*HESPDL
Trigger: GAGGTCAGGACTCTCATGGCAGAGCTGGAGTCTCAC...CAATGCCCCTGACTTACTATATGGTGGGGAACTAGCAGTAGTTAATGAGTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR GCA 90 bp CAGGCCTTTATTATCATGAGCAATGTGAAGCAGGCAGTTCCAGAGCTGGGTGACGACAACTTCTCAGCCTaGCATTCCAGTCACAGTTCC +
Preference number: 2 (lower is better)
Translates to: QAFIIMSNVKQAVPELGDDNFSA*HSSHSS
Trigger: GGAACTGTGACTGGAATGGCAGGCTGAGAAGTTGTC...GTCACCCAGCTCTGGAACTGCCTGCTTCACATTGCTCATGATAATAAAGGCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000600125.5
3UTR-3UTR CCA 90 bp AACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGTGAAATTCTCTAGGGTGAGCTGTTaGGCTGAACAGAGACAGCAC +
Preference number: 2 (lower is better)
Translates to: NRDSTLLRLLRPVSGVKFSRVSC*AEQRQH
Trigger: GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGA...GAATTTCACACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR CCA 90 bp TGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGCAGAGCTGGGTGACTTaGATATTGGATATATCCATA +
Preference number: 2 (lower is better)
Translates to: WLLPEFHSRVSCWAEQRQQSWVT*ILDISI
Trigger: TATGGATATATCCAATATCCAAGTCACCCAGCTCTG...CTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
3UTR-3UTR TCA 90 bp AGGTCTGCCCGTCACAAGCATGCTGGGGTAAATGGTAAACGCAGTATGATTCTGAGTTTCACTTCTTACTaGTGGTTCCCTCCCAATGGC +
Preference number: 2 (lower is better)
Translates to: RSARHKHAGVNGKRSMILSFTSY*WFPPNG
Trigger: GCCATTGGGAGGGAACCATCAGTAAGAAGTGAAACT...CAGAATCATACTGCGTTTACCATTTACCCCAGCATGCTTGTGACGGGCAGACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
3UTR-3UTR TCA 90 bp AACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGTGAAATTCCTCTCTTTCTGTGGCTaGAGTCATATCCACCTGGTC +
Preference number: 2 (lower is better)
Translates to: NRDSTLLRLLRPVSGVKFLSFCG*SHIHLV
Trigger: GACCAGGTGGATATGACTTCAGCCACAGAAAGAGAG...GAATTTCACACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR CCA 90 bp CACAAGCATGCTGGGGTAAATGGTAAACGCAGTATGATTCTGCCAGATGGTAGGCCCTGCCATTACTCTTaGTACATCCACCACCAAAGC +
Preference number: 2 (lower is better)
Translates to: HKHAGVNGKRSMILPDGRPCHYS*YIHHQS
Trigger: GCTTTGGTGGTGGATGTACCAAGAGTAATGGCAGGG...CCTACCATCTGGCAGAATCATACTGCGTTTACCATTTACCCCAGCATGCTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000600125.5
3UTR-3UTR TCA 90 bp CAGTTCCAGAGCTGGGTGACTTGGATATTGGATATATCCATAACGAGCATCATAGGTGAGCTGTTGGGCTaGACAGAGACAGCACATTGC +
Preference number: 2 (lower is better)
Translates to: QFQSWVTWILDISITSIIGELLG*TETAHC
Trigger: GCAATGTGCTGTCTCTGTTCAGCCCAACAGCTCACC...TATGATGCTCGTTATGGATATATCCAATATCCAAGTCACCCAGCTCTGGAACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
3UTR-3UTR TCA 90 bp CACAAGCATGCTGGGGTAAATGGTAAACGCAGTATGATTCTGCCAGATGGTAGGAGTTTCACTTCTTACTaGTGGTTCCCTCCCAATGGC +
Preference number: 2 (lower is better)
Translates to: HKHAGVNGKRSMILPDGRSFTSY*WFPPNG
Trigger: GCCATTGGGAGGGAACCATCAGTAAGAAGTGAAACT...CCTACCATCTGGCAGAATCATACTGCGTTTACCATTTACCCCAGCATGCTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
3UTR-3UTR TCA 90 bp AACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGTGAAATTCAGTTTCACTTCTTACTaGTGGTTCCCTCCCAATGGC +
Preference number: 2 (lower is better)
Translates to: NRDSTLLRLLRPVSGVKFSFTSY*WFPPNG
Trigger: GCCATTGGGAGGGAACCATCAGTAAGAAGTGAAACT...GAATTTCACACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR GCA 90 bp CAGCTTTTCACAGAGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGCAGTTCCTCAAACTCTaGTCTGTGTTGATGAGAACC +
Preference number: 2 (lower is better)
Translates to: QLFTESLPSFLGKSFPPLQFLKL*SVLMRT
Trigger: GGTTCTCATCAACACAGAGCAGAGTTTGAGGAACTG...CAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACTCTGTGAAAAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000600125.5
3UTR-3UTR CCA 90 bp ACAGAGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGGGCTGGTTCCAGAGCTGGGTGACTTaGATATTGGATATATCCATA +
Preference number: 2 (lower is better)
Translates to: TESLPSFLGKSFPPLGWFQSWVT*ILDISI
Trigger: TATGGATATATCCAATATCCAAGTCACCCAGCTCTG...GAACCAGCCCAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000600125.5
3UTR-3UTR CCA 90 bp CAGTTCCAGAGCTGGGTGACTTGGATATTGGATATATCCATAACGAGCATCATAGGTCTAAGTCCCCTCTaGGCCTCTCTTTCTGTGGCT +
Preference number: 2 (lower is better)
Translates to: QFQSWVTWILDISITSIIGLSPL*ASLSVA
Trigger: AGCCACAGAAAGAGAGGCCCAGAGGGGACTTAGACC...TATGATGCTCGTTATGGATATATCCAATATCCAAGTCACCCAGCTCTGGAACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000600125.5
3UTR-3UTR CCA 90 bp AACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGTGAAATTCGTCTTCTCTGGCACATaGACTCTGCAGCTTTTCACA +
Preference number: 2 (lower is better)
Translates to: NRDSTLLRLLRPVSGVKFVFSGT*TLQLFT
Trigger: TGTGAAAAGCTGCAGAGTCCATGTGCCAGAGAAGAC...GAATTTCACACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR TCA 90 bp CCAGGATATAAGAATGGAACCAAACAAATGGCTTCCAGTAGGGCCTTGACTGTTCTCTCTTTCTGTGGCTaGAGTCATATCCACCTGGTC +
Preference number: 2 (lower is better)
Translates to: PGYKNGTKQMASSRALTVLSFCG*SHIHLV
Trigger: GACCAGGTGGATATGACTTCAGCCACAGAAAGAGAG...AACAGTCAAGGCCCTACTGGAAGCCATTTGTTTGGTTCCATTCTTATATCCTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000596939.1
3UTR-3UTR GCA 90 bp AGGTCTGCCCGTCACAAGCATGCTGGGGTAAATGGTAAACGCAGTATGATTCTGCTCCTGCTACAAAAATaGTCTGCTCAGAAGATACCT +
Preference number: 2 (lower is better)
Translates to: RSARHKHAGVNGKRSMILLLLQK*SAQKIP
Trigger: AGGTATCTTCTGAGCAGAGCATTTTTGTAGCAGGAG...CAGAATCATACTGCGTTTACCATTTACCCCAGCATGCTTGTGACGGGCAGACCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000600125.5
3UTR-3UTR CCA 90 bp CAGTTCCAGAGCTGGGTGACTTGGATATTGGATATATCCATAACGAGCATCATAGTAAGTCAGGGGCATTaGCCTAAGACTTTCCCCCAC +
Preference number: 2 (lower is better)
Translates to: QFQSWVTWILDISITSIIVSQGH*PKTFPH
Trigger: GTGGGGGAAAGTCTTAGGCCAATGCCCCTGACTTAC...TATGATGCTCGTTATGGATATATCCAATATCCAAGTCACCCAGCTCTGGAACTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
3UTR-3UTR CCA 90 bp CCAGGATATAAGAATGGAACCAAACAAATGGCTTCCAGTAGGGCCTTGACTGTTGGGCCTCTCTTTCTGTaGCTGAAGTCATATCCACCT +
Preference number: 2 (lower is better)
Translates to: PGYKNGTKQMASSRALTVGPLFL*LKSYPP
Trigger: AGGTGGATATGACTTCAGCCACAGAAAGAGAGGCCC...AACAGTCAAGGCCCTACTGGAAGCCATTTGTTTGGTTCCATTCTTATATCCTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000596939.1
3UTR-3UTR CCA 90 bp AGTGCTATGAAAAATGTATCCAGTCCCAGGAAAATCCAACTACAAGTGAGCAGCGATAGAAACGCTGTGTaGCCACTGGCCCTGGAAACA +
Preference number: 2 (lower is better)
Translates to: SAMKNVSSPRKIQLQVSSDRNAV*PLALET
Trigger: TGTTTCCAGGGCCAGTGGCCACACAGCGTTTCTATC...GCTGCTCACTTGTAGTTGGATTTTCCTGGGACTGGATACATTTTTCATAGCACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000596939.1
3UTR-3UTR CCA 90 bp CTGCACTCATTAACTACTGCTAGTTCCCCACCATATAGTAAGTCAGGGGCATTGTCTGCCCTCCTTCCTTaGGAAAAGTTTCCCTCCATT +
Preference number: 2 (lower is better)
Translates to: LHSLTTASSPPYSKSGALSALLP*EKFPSI
Trigger: AATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGA...CAATGCCCCTGACTTACTATATGGTGGGGAACTAGCAGTAGTTAATGAGTGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR GCA 90 bp AGGTCTGCCCGTCACAAGCATGCTGGGGTAAATGGTAAACGCAGTATGATTCTGGCTACAAAAATGCTCTaGTCAGAAGATACCTCTTCA +
Preference number: 2 (lower is better)
Translates to: RSARHKHAGVNGKRSMILATKML*SEDTSS
Trigger: TGAAGAGGTATCTTCTGAGCAGAGCATTTTTGTAGC...CAGAATCATACTGCGTTTACCATTTACCCCAGCATGCTTGTGACGGGCAGACCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000600125.5
3UTR-3UTR GCA 90 bp AACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGTGAAATTCGAATTGCTTTCCACATaGCCCACACAAGTATGGTTT +
Preference number: 2 (lower is better)
Translates to: NRDSTLLRLLRPVSGVKFELLST*PTQVWF
Trigger: AAACCATACTTGTGTGGGGCATGTGGAAAGCAATTC...GAATTTCACACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR TCA 90 bp TGCTATGAAAAATGTATCCAGTCCCAGGAAAATCCAACTACAAGTGAGCAGCTGAAACAAACACTGATGTaGACAGTTAATGTTGCCAGT +
Preference number: 2 (lower is better)
Translates to: CYEKCIQSQENPTTSEQLKQTLM*TVNVAS
Trigger: ACTGGCAACATTAACTGTTCACATCAGTGTTTGTTT...CAGCTGCTCACTTGTAGTTGGATTTTCCTGGGACTGGATACATTTTTCATAGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000596939.1
3UTR-3UTR CAA 90 bp ATGGTTCCCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGACAAGCTTAGTGCTCTaGTGGGGCTTCATGCTGCTG +
Preference number: 3 (lower is better)
Translates to: MVPSQWLLPEFHSRVSCWTSLVL*WGFMLL
Trigger: CAGCAGCATGAAGCCCCACAAGAGCACTAAGCTTGT...CCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGGAACCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR TCA 72 bp CCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTaGGCTGTTGGGCTGAACAGAGACAGCACATTGCTT +
Preference number: 3 (lower is better)
Translates to: PPNGCSQSSTLG*AVGLNRDSTLL
Trigger: AAGCAATGTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
3UTR-3UTR CAA 90 bp ATGGTTCCCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGAAACTCTGCTCTGTGTaGATGAGAACCCTGTCTCCC +
Preference number: 3 (lower is better)
Translates to: MVPSQWLLPEFHSRVSCWKLCSV*MRTLSP
Trigger: GGGAGACAGGGTTCTCATCAACACAGAGCAGAGTTT...CCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGGAACCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000600125.5
3UTR CCA 72 bp TCCACTCCATGCCAACAACCAGGTCTAAGTCCCCTCTaGGCCTCTCTTTCTGTGGCTGAAGTCATATCCACC +
Preference number: 3 (lower is better)
Translates to: STPCQQPGLSPL*ASLSVAEVIST
Trigger: GGTGGATATGACTTCAGCCACAGAAAGAGAGGCCCAGAGGGGACTTAGACCTGGTTGTTGGCATGGAGTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
3UTR GCA 72 bp TGGTACATCCACCACCAAAGCATTCCTGGAATCCACTaGAGTAGCCTCCTTACCGGTCTCCTCGTATCCATC +
Preference number: 3 (lower is better)
Translates to: WYIHHQSIPGIH*SSLLTGLLVSI
Trigger: GATGGATACGAGGAGACCGGTAAGGAGGCTACTGCAGTGGATTCCAGGAATGCTTTGGTGGTGGATGTACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000600125.5
3UTR-3UTR CAA 90 bp GAGGTAGTGAGCCTCTGGAGGTCATACCATGGGGGAGTGCCAATGAAGGGCCAGTTAATGTTGCCAGTTTaGAACCCAGCTTTGACATCG +
Preference number: 3 (lower is better)
Translates to: EVVSLWRSYHGGVPMKGQLMLPV*NPALTS
Trigger: CGATGTCAAAGCTGGGTTCAAAACTGGCAACATTAA...CTGGCCCTTCATTGGCACTCCCCCATGGTATGACCTCCAGAGGCTCACTACCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000596939.1
3UTR-3UTR CAA 90 bp CTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGCACTGGGTGACTTGGATATaGGATATATCCATAACGAGC +
Preference number: 3 (lower is better)
Translates to: LLPEFHSRVSCWAEQRQHWVTWI*DISITS
Trigger: GCTCGTTATGGATATATCCAATATCCAAGTCACCCA...GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
3UTR-3UTR CAA 90 bp CTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGCACTCCTTCTGTGTCCTCTaGAACAAAGCTGATTATTTC +
Preference number: 3 (lower is better)
Translates to: LLPEFHSRVSCWAEQRQHSFCVL*NKADYF
Trigger: GAAATAATCAGCTTTGTTCAAGAGGACACAGAAGGA...GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
3UTR GCA 72 bp CTCAGCCTGCCATTCCAGTCACAGTTCCTCAAACTCTaGTCTGTGTTGATGAGAACCCTGTCTCCCAAATGT +
Preference number: 3 (lower is better)
Translates to: LSLPFQSQFLKL*SVLMRTLSPKC
Trigger: ACATTTGGGAGACAGGGTTCTCATCAACACAGAGCAGAGTTTGAGGAACTGTGACTGGAATGGCAGGCTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000600125.5
3UTR-3UTR CAA 90 bp GTTGGGCTGAACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTTGGGTGACTTGGATATaGGATATATCCATAACGAGC +
Preference number: 3 (lower is better)
Translates to: VGLNRDSTLLRLLRPVSGWVTWI*DISITS
Trigger: GCTCGTTATGGATATATCCAATATCCAAGTCACCCA...ACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTTCAGCCCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
3UTR CCA 72 bp TGTCAAGAACAGGAAAGGACAGATAGAAACGCTGTGTaGCCACTGGCCCTGGAAACAAACACTGATGTGAAC +
Preference number: 3 (lower is better)
Translates to: CQEQERTDRNAV*PLALETNTDVN
Trigger: GTTCACATCAGTGTTTGTTTCCAGGGCCAGTGGCCACACAGCGTTTCTATCTGTCCTTTCCTGTTCTTGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000596939.1
3UTR-3UTR CAA 90 bp CACAAGCATGCTGGGGTAAATGGTAAACGCAGTATGATTCTGCCAGATGGTAGGAACAGAGACAGCACATaGCTTAGACTGCTAAGGCCT +
Preference number: 3 (lower is better)
Translates to: HKHAGVNGKRSMILPDGRNRDST*LRLLRP
Trigger: AGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT...CCTACCATCTGGCAGAATCATACTGCGTTTACCATTTACCCCAGCATGCTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
3UTR-3UTR CAA 90 bp AACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGTGAAATTCAACAGAGACAGCACATaGCTTAGACTGCTAAGGCCT +
Preference number: 3 (lower is better)
Translates to: NRDSTLLRLLRPVSGVKFNRDST*LRLLRP
Trigger: AGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT...GAATTTCACACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
3UTR TCA 72 bp ATTCAAAACCCTCAGTTAATCTCAACGCCCTCAGAATaGAGCGACAACTTCTCAGCCTGCCATTCCAGTCAC +
Preference number: 3 (lower is better)
Translates to: IQNPQLISTPSE*SDNFSACHSSH
Trigger: GTGACTGGAATGGCAGGCTGAGAAGTTGTCGCTTCATTCTGAGGGCGTTGAGATTAACTGAGGGTTTTGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000600125.5
3UTR TCA 72 bp AGAATGGAACCAAACAAATGGCTTCCAGTAGGGCCTTaGCTGTTAGTGACTCGTGAGTGCTATGAAAAATGT +
Preference number: 3 (lower is better)
Translates to: RMEPNKWLPVGP*LLVTRECYEKC
Trigger: ACATTTTTCATAGCACTCACGAGTCACTAACAGTCAAGGCCCTACTGGAAGCCATTTGTTTGGTTCCATTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000596939.1
3UTR-3UTR CAA 90 bp AGTGCTATGAAAAATGTATCCAGTCCCAGGAAAATCCAACTACAAGTGAGCAGCTGTGAACAGTTAATGTaGCCAGTTTTGAACCCAGCT +
Preference number: 3 (lower is better)
Translates to: SAMKNVSSPRKIQLQVSSCEQLM*PVLNPA
Trigger: AGCTGGGTTCAAAACTGGCAACATTAACTGTTCACA...GCTGCTCACTTGTAGTTGGATTTTCCTGGGACTGGATACATTTTTCATAGCACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000596939.1
3UTR TCA 72 bp ACTTGGATATTGGATATATCCATAACGAGCATCATATaGAATCAATCAACACAGGTAAGTCTCTGCAGGCTA +
Preference number: 3 (lower is better)
Translates to: TWILDISITSII*NQSTQVSLCRL
Trigger: TAGCCTGCAGAGACTTACCTGTGTTGATTGATTTCATATGATGCTCGTTATGGATATATCCAATATCCAAGT
38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR CCA 90 bp GTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTCCGCCATAGGACCGTaGGCGCGGACAGCTGCCGGG +
Preference number: 4 (lower is better)
Translates to: VSGVKFPMAGKVQPPGEGSAIGP*ARTAAG
Trigger: CCCGGCAGCTGTCCGCGCCCACGGTCCTATGGCGGA...GCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp TGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGGAGTCGGAGAAAGGGTaGCTGAGGGCCCGGAGGACG +
Preference number: 4 (lower is better)
Translates to: WLLPEFHSRVSCWAEQRQESEKG*LRARRT
Trigger: CGTCCTCCGGGCCCTCAGTCACCCTTTCTCCGACTC...CTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS-3UTR GCA 90 bp AGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGGGCTGGTTCTGGTCCCCGAGCCTTTACCTaGGCCGTCCCCTCCGCCCGT +
Preference number: 4 (lower is better)
Translates to: SLCPPSLGKVSLHWAGSGPRAFT*AVPSAR
Trigger: ACGGGCGGAGGGGACGGCGCAGGTAAAGGCTCGGGG...ACCAGAACCAGCCCAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS-3UTR CCA 90 bp AGGCCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGCGCGTCTCGGGACACTaGGGACAACATCTCCTCCGC +
Preference number: 4 (lower is better)
Translates to: RPVSGVKFPMAGKVQPPGRVSGH*GQHLLR
Trigger: GCGGAGGAGATGTTGTCCCCAGTGTCCCGAGACGCG...CCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CCCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACGCGTCTCGGGACACTaGGGACAACATCTCCTCCGC +
Preference number: 4 (lower is better)
Translates to: PSQWLLPEFHSRVSCWAERVSGH*GQHLLR
Trigger: GCGGAGGAGATGTTGTCCCCAGTGTCCCGAGACGCG...TTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp AGGTCTGCCCGTCACAAGCATGCTGGGGTAAATGGTAAACGCAGTATGATTCTGGTGGGCGCGGACAGCTaGCGGGAGCGGCAGGCGTCT +
Preference number: 4 (lower is better)
Translates to: RSARHKHAGVNGKRSMILVGADS*RERQAS
Trigger: AGACGCCTGCCGCTCCCGGCAGCTGTCCGCGCCCAC...CAGAATCATACTGCGTTTACCATTTACCCCAGCATGCTTGTGACGGGCAGACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR TCA 90 bp AGGCCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGGGGCTTCATGCTGCTaGGAGAGGCCTGATGCTGAA +
Preference number: 4 (lower is better)
Translates to: RPVSGVKFPMAGKVQPPGGASCC*ERPDAE
Trigger: TTCAGCATCAGGCCTCTCTCAGCAGCATGAAGCCCC...CCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGGCCT
59% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp CAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTGCTGCACGGCCTGTGTCCGGTGTaGAATTCCCAATGGCGGGTA +
Preference number: 4 (lower is better)
Translates to: QWRVRFSLQGKAFLHLLHGLCPV*NSQWRV
Trigger: TACCCGCCATTGGGAATTTCACACCGGACACAGGCC...GTGCAGCAGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp GAGGTAGTGAGCCTCTGGAGGTCATACCATGGGGGAGTGCCAATGAAGGGCCAGAGGCACTTCCGTCCCTaGAGAGCATCAGACGCGTCT +
Preference number: 4 (lower is better)
Translates to: EVVSLWRSYHGGVPMKGQRHFRP*RASDAS
Trigger: AGACGCGTCTGATGCTCTGCAGGGACGGAAGTGCCT...CTGGCCCTTCATTGGCACTCCCCCATGGTATGACCTCCAGAGGCTCACTACCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR CCA 90 bp ATCCACTGCAGTAGCCTCCTTACCGGTCTCCTCGTATCCATCCTCGCAGTCCCCGATGGTAGGAGCAGATaGCTCCTGCCCCAGCAAAGG +
Preference number: 4 (lower is better)
Translates to: IHCSSLLTGLLVSILAVPDGRSR*LLPQQR
Trigger: CCTTTGCTGGGGCAGGAGCCATCTGCTCCTACCATC...GGGGACTGCGAGGATGGATACGAGGAGACCGGTAAGGAGGCTACTGCAGTGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS-3UTR TCA 90 bp TGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGCGGCCAGGGACAGCCTaGCAGAAACAAAATGTCCGC +
Preference number: 4 (lower is better)
Translates to: WLLPEFHSRVSCWAEQRQRPGTA*QKQNVR
Trigger: GCGGACATTTTGTTTCTGTCAGGCTGTCCCTGGCCG...CTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000601584.1
CDS-3UTR TCA 90 bp TGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGGGGGCTTCATGCTGCTaGGAGAGGCCTGATGCTGAA +
Preference number: 4 (lower is better)
Translates to: WLLPEFHSRVSCWAEQRQGASCC*ERPDAE
Trigger: TTCAGCATCAGGCCTCTCTCAGCAGCATGAAGCCCC...CTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp GTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCGGTTGGGTCTTTGAGTaGAGGCTTTCCCGCACTTGC +
Preference number: 4 (lower is better)
Translates to: VSGVKFPMAGKVQPPGEGGWVFE*RLSRTC
Trigger: GCAAGTGCGGGAAAGCCTTCACTCAAAGACCCAACC...GCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp TGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGGGCCTGTGTCCGGTGTaGAATTCCCAATGGCGGGTA +
Preference number: 4 (lower is better)
Translates to: WLLPEFHSRVSCWAEQRQGLCPV*NSQWRV
Trigger: TACCCGCCATTGGGAATTTCACACCGGACACAGGCC...CTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp AGGCCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGGTGAGCTGTTGGGCTaGACAGAGACAGCACATTGC +
Preference number: 4 (lower is better)
Translates to: RPVSGVKFPMAGKVQPPGGELLG*TETAHC
Trigger: GCAATGTGCTGTCTCTGTTCAGCCCAACAGCTCACC...CCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGGCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp GTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCACCCCTAGTGGGCTGTaGGACCACTCACAACACCTT +
Preference number: 4 (lower is better)
Translates to: VSGVKFPMAGKVQPPGEGTPSGL*DHSQHL
Trigger: AAGGTGTTGTGAGTGGTCTCACAGCCCACTAGGGGT...GCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR TCA 90 bp ATCGTGCCCTTCCCCGATGTCCACTCACCAGGTCTAAGTCCCCTCTGGGCCTCTCTTCCAGTAGGGCCTTaGCTGTTAGTGACTCGTGAG +
Preference number: 4 (lower is better)
Translates to: IVPFPDVHSPGLSPLWASLPVGP*LLVTRE
Trigger: CTCACGAGTCACTAACAGTCAAGGCCCTACTGGAAG...AGAGGCCCAGAGGGGACTTAGACCTGGTGAGTGGACATCGGGGAAGGGCACGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR GCA 90 bp CCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAAGGCACTTCCGTCCCTaGAGAGCATCAGACGCGTCT +
Preference number: 4 (lower is better)
Translates to: PVSGVKFPMAGKVQPPGERHFRP*RASDAS
Trigger: AGACGCGTCTGATGCTCTGCAGGGACGGAAGTGCCT...TTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp AAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTCGCGTCTCGGGACACTaGGGACAACATCTCCTCCGC +
Preference number: 4 (lower is better)
Translates to: KFPMAGKVQPPGEGFPASRVSGH*GQHLLR
Trigger: GCGGAGGAGATGTTGTCCCCAGTGTCCCGAGACGCG...AGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CCCGATGTCCACTCACCAGGTCTAAGTCCCCTCTGGGCCTCTCTTTCTGTGGCTGGTCTAAGTCCCCTCTaGGCCTCTCTTTCTGTGGCT +
Preference number: 4 (lower is better)
Translates to: PDVHSPGLSPLWASLSVAGLSPL*ASLSVA
Trigger: AGCCACAGAAAGAGAGGCCCAGAGGGGACTTAGACC...AGCCACAGAAAGAGAGGCCCAGAGGGGACTTAGACCTGGTGAGTGGACATCGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR CCA 90 bp TCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTGCTGGGTCTAAGTCCCCTCTaGGCCTCTCTTTCTGTGGCT +
Preference number: 4 (lower is better)
Translates to: SQWRVRFSLQGKAFLHLLGLSPL*ASLSVA
Trigger: AGCCACAGAAAGAGAGGCCCAGAGGGGACTTAGACC...CAGCAGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp AGGCCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGATGGTTCCCTCCCAATaGCTGCTCCCAGAGTTCCAC +
Preference number: 4 (lower is better)
Translates to: RPVSGVKFPMAGKVQPPGMVPSQ*LLPEFH
Trigger: GTGGAACTCTGGGAGCAGCCATTGGGAGGGAACCAT...CCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp TGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGTGTCTCCCAAATGTTTaGGGGTCAGCAGCACCCCCG +
Preference number: 4 (lower is better)
Translates to: WLLPEFHSRVSCWAEQRQCLPNV*GSAAPP
Trigger: CGGGGGTGCTGCTGACCCCCAAACATTTGGGAGACA...CTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS-3UTR TCA 90 bp AGGCCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGCATATGTCACATGGGTaGGACTCCAGCTCTGCCATG +
Preference number: 4 (lower is better)
Translates to: RPVSGVKFPMAGKVQPPGHMSHG*DSSSAM
Trigger: CATGGCAGAGCTGGAGTCTCACCCATGTGACATATG...CCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp CAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTGCTGCACCATATGTCACATGGGTaGGACTCCAGCTCTGCCATG +
Preference number: 4 (lower is better)
Translates to: QWRVRFSLQGKAFLHLLHHMSHG*DSSSAM
Trigger: CATGGCAGAGCTGGAGTCTCACCCATGTGACATATG...GTGCAGCAGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp GGGAGAGAAGAGAGGTCTGCCCGTCACAAGCATGCTGGGGTAAATGGTAAACGCGGGGCTTCATGCTGCTaGGAGAGGCCTGATGCTGAA +
Preference number: 4 (lower is better)
Translates to: GREERSARHKHAGVNGKRGASCC*ERPDAE
Trigger: TTCAGCATCAGGCCTCTCTCAGCAGCATGAAGCCCC...GCGTTTACCATTTACCCCAGCATGCTTGTGACGGGCAGACCTCTCTTCTCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR TCA 90 bp CCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGTTGGGTCTTTGAGTaGAGGCTTTCCCGCACTTGC +
Preference number: 4 (lower is better)
Translates to: PVSGVKFPMAGKVQPPGEGWVFE*RLSRTC
Trigger: GCAAGTGCGGGAAAGCCTTCACTCAAAGACCCAACC...TTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp CCCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAAGTGTCTGTTTCCGGATaGATTCTCTCCCGCACTCAC +
Preference number: 4 (lower is better)
Translates to: PSQWLLPEFHSRVSCWAEVSVSG*ILSRTH
Trigger: GTGAGTGCGGGAGAGAATTCATCCGGAAACAGACAC...TTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp TGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGGTGAGACTCCAGCTCTaGCATGAGAGTCCTGACCTC +
Preference number: 4 (lower is better)
Translates to: WLLPEFHSRVSCWAEQRQVRLQL*HESPDL
Trigger: GAGGTCAGGACTCTCATGGCAGAGCTGGAGTCTCAC...CTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp GTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTCCCTCCCAATGGCTaGTCCCAGAGTTCCACTCTA +
Preference number: 4 (lower is better)
Translates to: VSGVKFPMAGKVQPPGEGFPPNG*SQSSTL
Trigger: TAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGGAA...GCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp TCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTGCTGTTCCCTCCCAATGGCTaGTCCCAGAGTTCCACTCTA +
Preference number: 4 (lower is better)
Translates to: SQWRVRFSLQGKAFLHLLFPPNG*SQSSTL
Trigger: TAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGGAA...CAGCAGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGTCTAAGTCCCCTCTaGGCCTCTCTTTCTGTGGCT +
Preference number: 4 (lower is better)
Translates to: PVSGVKFPMAGKVQPPGEGLSPL*ASLSVA
Trigger: AGCCACAGAAAGAGAGGCCCAGAGGGGACTTAGACC...TTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp AGGCCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGCCACATATGTCACATaGGTGAGACTCCAGCTCTGC +
Preference number: 4 (lower is better)
Translates to: RPVSGVKFPMAGKVQPPGATYVT*VRLQLC
Trigger: GCAGAGCTGGAGTCTCACCCATGTGACATATGTGGC...CCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CCCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAAGTAAGTCAGGGGCATTaGCCTAAGACTTTCCCCCAC +
Preference number: 4 (lower is better)
Translates to: PSQWLLPEFHSRVSCWAEVSQGH*PKTFPH
Trigger: GTGGGGGAAAGTCTTAGGCCAATGCCCCTGACTTAC...TTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGCACATGGTTCCCTCCCAATaGCTGCTCCCAGAGTTCCAC +
Preference number: 4 (lower is better)
Translates to: LLPEFHSRVSCWAEQRQHMVPSQ*LLPEFH
Trigger: GTGGAACTCTGGGAGCAGCCATTGGGAGGGAACCAT...GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp ACAGAGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGGGCTGGTTCCGGCCAGGGACAGCCTaGCAGAAACAAAATGTCCGC +
Preference number: 4 (lower is better)
Translates to: TESLPSFLGKSFPPLGWFRPGTA*QKQNVR
Trigger: GCGGACATTTTGTTTCTGTCAGGCTGTCCCTGGCCG...GAACCAGCCCAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACTCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000601584.1
CDS-3UTR TCA 90 bp CCCTTCCCCGATGTCCACTCACCAGGTCTAAGTCCCCTCTGGGCCTCTCTTTCTCTCTCTTTCTGTGGCTaGAGTCATATCCACCTGGTC +
Preference number: 4 (lower is better)
Translates to: PFPDVHSPGLSPLWASLSLSFCG*SHIHLV
Trigger: GACCAGGTGGATATGACTTCAGCCACAGAAAGAGAG...AGAAAGAGAGGCCCAGAGGGGACTTAGACCTGGTGAGTGGACATCGGGGAAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR TCA 90 bp AGGCCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGTACCTTTCCCACATGTaGGGGTCTTCTCTGGCACAT +
Preference number: 4 (lower is better)
Translates to: RPVSGVKFPMAGKVQPPGYLSHM*GSSLAH
Trigger: ATGTGCCAGAGAAGACCCTCACATGTGGGAAAGGTA...CCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp ATGGTTCCCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGAGTTCCACTCTAGGGTaGGCTGTTGGGCTGAACAGA +
Preference number: 4 (lower is better)
Translates to: MVPSQWLLPEFHSRVSCWSSTLG*AVGLNR
Trigger: TCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACT...CCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGGAACCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp CTGCACTCATTAACTACTGCTAGTTCCCCACCATATAGTAAGTCAGGGGCATTGCGGAGAAAGGGTGACTaGGGGCCCGGAGGACGCAGC +
Preference number: 4 (lower is better)
Translates to: LHSLTTASSPPYSKSGALRRKGD*GPGGRS
Trigger: GCTGCGTCCTCCGGGCCCTCAGTCACCCTTTCTCCG...CAATGCCCCTGACTTACTATATGGTGGGGAACTAGCAGTAGTTAATGAGTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS-3UTR GCA 90 bp AGGCCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGTTGGGCTGGTTCTGGTaGTGGTCAAAGTCTGTACTG +
Preference number: 4 (lower is better)
Translates to: RPVSGVKFPMAGKVQPPGLGWFW*WSKSVL
Trigger: CAGTACAGACTTTGACCAGCACCAGAACCAGCCCAA...CCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp TGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGGCCACATATGTCACATaGGTGAGACTCCAGCTCTGC +
Preference number: 4 (lower is better)
Translates to: WLLPEFHSRVSCWAEQRQATYVT*VRLQLC
Trigger: GCAGAGCTGGAGTCTCACCCATGTGACATATGTGGC...CTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp GTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCCCATTGGGCTGGTTCTaGTGCTGGTCAAAGTCTGTA +
Preference number: 4 (lower is better)
Translates to: VSGVKFPMAGKVQPPGEGPLGWF*CWSKSV
Trigger: TACAGACTTTGACCAGCACCAGAACCAGCCCAATGG...GCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp GTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCAGCTTAGTGCTCTTGTaGGGCTTCATGCTGCTGAGA +
Preference number: 4 (lower is better)
Translates to: VSGVKFPMAGKVQPPGEGSLVLL*GFMLLR
Trigger: TCTCAGCAGCATGAAGCCCCACAAGAGCACTAAGCT...GCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp TGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGGTAAGTCAGGGGCATTaGCCTAAGACTTTCCCCCAC +
Preference number: 4 (lower is better)
Translates to: WLLPEFHSRVSCWAEQRQVSQGH*PKTFPH
Trigger: GTGGGGGAAAGTCTTAGGCCAATGCCCCTGACTTAC...CTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGCACTCTAGGGTGAGCTGTTaGGCTGAACAGAGACAGCAC +
Preference number: 4 (lower is better)
Translates to: LLPEFHSRVSCWAEQRQHSRVSC*AEQRQH
Trigger: GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGA...GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp AAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTGATGGTAGGAGCAGATaGCTCCTGCCCCAGCAAAGG +
Preference number: 4 (lower is better)
Translates to: KFPMAGKVQPPGEGFPASDGRSR*LLPQQR
Trigger: CCTTTGCTGGGGCAGGAGCCATCTGCTCCTACCATC...AGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR CCA 90 bp AACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGTGAAATTCAGTGCGTCGCTGTCCTaGGACACAGGGGCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: NRDSTLLRLLRPVSGVKFSASLS*DTGAAG
Trigger: GCCTGCAGCCCCTGTGTCCCAGGACAGCGACGCACT...GAATTTCACACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS-3UTR CCA 90 bp CCAGTTTTGAACCCAGCTTTGACATCGTGCCCTTCCCCGATGTCCACTCACCAGCTGGAGGTCATACCATaGGGGAGTGCCAATGAAGGG +
Preference number: 4 (lower is better)
Translates to: PVLNPALTSCPSPMSTHQLEVIP*GSANEG
Trigger: CCCTTCATTGGCACTCCCCCATGGTATGACCTCCAG...CTGGTGAGTGGACATCGGGGAAGGGCACGATGTCAAAGCTGGGTTCAAAACTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR TCA 90 bp GTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCCTCGCTCTAGTTTCATaGCTGCACGTGATCTGGAAA +
Preference number: 4 (lower is better)
Translates to: VSGVKFPMAGKVQPPGEGLALVS*LHVIWK
Trigger: TTTCCAGATCACGTGCAGTCATGAAACTAGAGCGAG...GCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp GAGGTAGTGAGCCTCTGGAGGTCATACCATGGGGGAGTGCCAATGAAGGGCCAGCTCGCTCTAGTTTCATaGCTGCACGTGATCTGGAAA +
Preference number: 4 (lower is better)
Translates to: EVVSLWRSYHGGVPMKGQLALVS*LHVIWK
Trigger: TTTCCAGATCACGTGCAGTCATGAAACTAGAGCGAG...CTGGCCCTTCATTGGCACTCCCCCATGGTATGACCTCCAGAGGCTCACTACCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR TCA 90 bp CTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGCACCTCTCTTTCTGTGGCTaGAGTCATATCCACCTGGTC +
Preference number: 4 (lower is better)
Translates to: LLPEFHSRVSCWAEQRQHLSFCG*SHIHLV
Trigger: GACCAGGTGGATATGACTTCAGCCACAGAAAGAGAG...GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp CTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGCACTACCTTTCCCACATGTaGGGGTCTTCTCTGGCACAT +
Preference number: 4 (lower is better)
Translates to: LLPEFHSRVSCWAEQRQHYLSHM*GSSLAH
Trigger: ATGTGCCAGAGAAGACCCTCACATGTGGGAAAGGTA...GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp CTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGCACGATACCTCTGTCCCATaGGAAAGCCACTCACAAGCT +
Preference number: 4 (lower is better)
Translates to: LLPEFHSRVSCWAEQRQHDTSVP*ESHSQA
Trigger: AGCTTGTGAGTGGCTTTCTCATGGGACAGAGGTATC...GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp AAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTGGTTGGGTCTTTGAGTaGAGGCTTTCCCGCACTTGC +
Preference number: 4 (lower is better)
Translates to: KFPMAGKVQPPGEGFPASGWVFE*RLSRTC
Trigger: GCAAGTGCGGGAAAGCCTTCACTCAAAGACCCAACC...AGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp AGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGGGCTGGTTCTGGTGGTGAGCTGTTGGGCTaGACAGAGACAGCACATTGC +
Preference number: 4 (lower is better)
Translates to: SLCPPSLGKVSLHWAGSGGELLG*TETAHC
Trigger: GCAATGTGCTGTCTCTGTTCAGCCCAACAGCTCACC...ACCAGAACCAGCCCAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp TCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTGCTGAGTTTCACTTCTTACTaGTGGTTCCCTCCCAATGGC +
Preference number: 4 (lower is better)
Translates to: SQWRVRFSLQGKAFLHLLSFTSY*WFPPNG
Trigger: GCCATTGGGAGGGAACCATCAGTAAGAAGTGAAACT...CAGCAGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp GTTGCCAGTTTTGAACCCAGCTTTGACATCGTGCCCTTCCCCGATGTCCACTCAAACATGGGTGTAAGGTaGAGGCCAGAGGTGAGGGTG +
Preference number: 4 (lower is better)
Translates to: VASFEPSFDIVPFPDVHSNMGVR*RPEVRV
Trigger: CACCCTCACCTCTGGCCTTCACCTTACACCCATGTT...TGAGTGGACATCGGGGAAGGGCACGATGTCAAAGCTGGGTTCAAAACTGGCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR TCA 90 bp CCAGTTTTGAACCCAGCTTTGACATCGTGCCCTTCCCCGATGTCCACTCACCAGAGGAAGGAATGGCTTTaGGGTAGTGAGCCTCTGGAG +
Preference number: 4 (lower is better)
Translates to: PVLNPALTSCPSPMSTHQRKEWL*GSEPLE
Trigger: CTCCAGAGGCTCACTACCTCAAAGCCATTCCTTCCT...CTGGTGAGTGGACATCGGGGAAGGGCACGATGTCAAAGCTGGGTTCAAAACTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR GCA 90 bp CAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTGCTGCACTCATCCTCCACTCCATaGCAACAACCAGGTCTAAGT +
Preference number: 4 (lower is better)
Translates to: QWRVRFSLQGKAFLHLLHSSSTP*QQPGLS
Trigger: ACTTAGACCTGGTTGTTGGCATGGAGTGGAGGATGA...GTGCAGCAGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp GTTGGGCTGAACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGTGAGACTCCAGCTCTaGCATGAGAGTCCTGACCTC +
Preference number: 4 (lower is better)
Translates to: VGLNRDSTLLRLLRPVSGVRLQL*HESPDL
Trigger: GAGGTCAGGACTCTCATGGCAGAGCTGGAGTCTCAC...ACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTTCAGCCCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp TGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGCACAAGTATGGTTTCTaGCTGGCTTTTCCCCCATGG +
Preference number: 4 (lower is better)
Translates to: WLLPEFHSRVSCWAEQRQHKYGF*LAFPPW
Trigger: CCATGGGGGAAAAGCCAGGCAGAAACCATACTTGTG...CTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp CTGCACTCATTAACTACTGCTAGTTCCCCACCATATAGTAAGTCAGGGGCATTGACCCCGCCCCAAGAGTaGGTCGCTGTCCTGGGACAC +
Preference number: 4 (lower is better)
Translates to: LHSLTTASSPPYSKSGALTPPQE*VAVLGH
Trigger: GTGTCCCAGGACAGCGACGCACTCTTGGGGCGGGGT...CAATGCCCCTGACTTACTATATGGTGGGGAACTAGCAGTAGTTAATGAGTGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS-3UTR CCA 90 bp CAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTGCTGCACCTGGCTTTTCCCCCATaGTATTTAGCCAGGTGTAAG +
Preference number: 4 (lower is better)
Translates to: QWRVRFSLQGKAFLHLLHLAFPP*YLARCK
Trigger: CTTACACCTGGCTAAATACCATGGGGGAAAAGCCAG...GTGCAGCAGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp GTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTCTGCCCTCCTTCCTTaGGAAAAGTTTCCCTCCATT +
Preference number: 4 (lower is better)
Translates to: VSGVKFPMAGKVQPPGEGSALLP*EKFPSI
Trigger: AATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGA...GCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp ATCCACTGCAGTAGCCTCCTTACCGGTCTCCTCGTATCCATCCTCGCAGTCCCCTCTGCCCTCCTTCCTTaGGAAAAGTTTCCCTCCATT +
Preference number: 4 (lower is better)
Translates to: IHCSSLLTGLLVSILAVPSALLP*EKFPSI
Trigger: AATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGA...GGGGACTGCGAGGATGGATACGAGGAGACCGGTAAGGAGGCTACTGCAGTGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS-3UTR CCA 90 bp AGGCCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGTCTTCTCTGGCACATaGACTCTGCAGCTTTTCACA +
Preference number: 4 (lower is better)
Translates to: RPVSGVKFPMAGKVQPPGVFSGT*TLQLFT
Trigger: TGTGAAAAGCTGCAGAGTCCATGTGCCAGAGAAGAC...CCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp GTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCGTCTTCTCTGGCACATaGACTCTGCAGCTTTTCACA +
Preference number: 4 (lower is better)
Translates to: VSGVKFPMAGKVQPPGEGVFSGT*TLQLFT
Trigger: TGTGAAAAGCTGCAGAGTCCATGTGCCAGAGAAGAC...GCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAAGCTTAGTGCTCTTGTaGGGCTTCATGCTGCTGAGA +
Preference number: 4 (lower is better)
Translates to: PVSGVKFPMAGKVQPPGESLVLL*GFMLLR
Trigger: TCTCAGCAGCATGAAGCCCCACAAGAGCACTAAGCT...TTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CCCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAAAGGCAGTTCCAGAGCTaGGTGACTTGGATATTGGAT +
Preference number: 4 (lower is better)
Translates to: PSQWLLPEFHSRVSCWAERQFQS*VTWILD
Trigger: ATCCAATATCCAAGTCACCCAGCTCTGGAACTGCCT...TTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR TCA 90 bp CCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAACTCGCTCTAGTTTCATaGCTGCACGTGATCTGGAAA +
Preference number: 4 (lower is better)
Translates to: PVSGVKFPMAGKVQPPGELALVS*LHVIWK
Trigger: TTTCCAGATCACGTGCAGTCATGAAACTAGAGCGAG...TTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp CAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTGCTGCACGGTCAAAGTCTGTACTaGACCAGAATTGCTTTCCAC +
Preference number: 4 (lower is better)
Translates to: QWRVRFSLQGKAFLHLLHGQSLY*TRIAFH
Trigger: GTGGAAAGCAATTCTGGTTCAGTACAGACTTTGACC...GTGCAGCAGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp CTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGCACGTGCAACACAGCTGCTaGAAGCATCTCACATACTTG +
Preference number: 4 (lower is better)
Translates to: LLPEFHSRVSCWAEQRQHVQHSC*KHLTYL
Trigger: CAAGTATGTGAGATGCTTTCAGCAGCTGTGTTGCAC...GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp CCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGTGCAACACAGCTGCTaGAAGCATCTCACATACTTG +
Preference number: 4 (lower is better)
Translates to: PVSGVKFPMAGKVQPPGEVQHSC*KHLTYL
Trigger: CAAGTATGTGAGATGCTTTCAGCAGCTGTGTTGCAC...TTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp AAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTTCAACGCCCTCAGAATaGAGCGACAACTTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: KFPMAGKVQPPGEGFPASSTPSE*SDNFSA
Trigger: GGCTGAGAAGTTGTCGCTTCATTCTGAGGGCGTTGA...AGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS-3UTR GCA 90 bp CAGGCCTTTATTATCATGAGCAATGTGAAGCAGGCAGTTCCAGAGCTGGGTGACAGGCACTTCCGTCCCTaGAGAGCATCAGACGCGTCT +
Preference number: 4 (lower is better)
Translates to: QAFIIMSNVKQAVPELGDRHFRP*RASDAS
Trigger: AGACGCGTCTGATGCTCTGCAGGGACGGAAGTGCCT...GTCACCCAGCTCTGGAACTGCCTGCTTCACATTGCTCATGATAATAAAGGCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR GCA 90 bp CTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGCACTCATCCTCCACTCCATaGCAACAACCAGGTCTAAGT +
Preference number: 4 (lower is better)
Translates to: LLPEFHSRVSCWAEQRQHSSSTP*QQPGLS
Trigger: ACTTAGACCTGGTTGTTGGCATGGAGTGGAGGATGA...GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp CAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTGCTGCACTCTCTGCAGGCTATTTaGAGAATCCTTCTGTGTCCT +
Preference number: 4 (lower is better)
Translates to: QWRVRFSLQGKAFLHLLHSLQAI*RILLCP
Trigger: AGGACACAGAAGGATTCTGCAAATAGCCTGCAGAGA...GTGCAGCAGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR CCA 90 bp GGGAGAGAAGAGAGGTCTGCCCGTCACAAGCATGCTGGGGTAAATGGTAAACGCGGGCCTCTCTTTCTGTaGCTGAAGTCATATCCACCT +
Preference number: 4 (lower is better)
Translates to: GREERSARHKHAGVNGKRGPLFL*LKSYPP
Trigger: AGGTGGATATGACTTCAGCCACAGAAAGAGAGGCCC...GCGTTTACCATTTACCCCAGCATGCTTGTGACGGGCAGACCTCTCTTCTCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR CCA 90 bp AAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTGCCACATATGTCACATaGGTGAGACTCCAGCTCTGC +
Preference number: 4 (lower is better)
Translates to: KFPMAGKVQPPGEGFPASATYVT*VRLQLC
Trigger: GCAGAGCTGGAGTCTCACCCATGTGACATATGTGGC...AGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CCCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAAAGTATGGTTTCTGCCTaGCTTTTCCCCCATGGTATT +
Preference number: 4 (lower is better)
Translates to: PSQWLLPEFHSRVSCWAESMVSA*LFPHGI
Trigger: AATACCATGGGGGAAAAGCCAGGCAGAAACCATACT...TTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp AGGCCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGAGTATGGTTTCTGCCTaGCTTTTCCCCCATGGTATT +
Preference number: 4 (lower is better)
Translates to: RPVSGVKFPMAGKVQPPGSMVSA*LFPHGI
Trigger: AATACCATGGGGGAAAAGCCAGGCAGAAACCATACT...CCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp AAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTTCTAGGGTGAGCTGTTaGGCTGAACAGAGACAGCAC +
Preference number: 4 (lower is better)
Translates to: KFPMAGKVQPPGEGFPASSRVSC*AEQRQH
Trigger: GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGA...AGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp ACAGAGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGGGCTGGTTCCTCTCTTTCTGTGGCTaGAGTCATATCCACCTGGTC +
Preference number: 4 (lower is better)
Translates to: TESLPSFLGKSFPPLGWFLSFCG*SHIHLV
Trigger: GACCAGGTGGATATGACTTCAGCCACAGAAAGAGAG...GAACCAGCCCAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp AGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGGGCTGGTTCTGGTGATACCTCTGTCCCATaGGAAAGCCACTCACAAGCT +
Preference number: 4 (lower is better)
Translates to: SLCPPSLGKVSLHWAGSGDTSVP*ESHSQA
Trigger: AGCTTGTGAGTGGCTTTCTCATGGGACAGAGGTATC...ACCAGAACCAGCCCAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp GTTGGGCTGAACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTCATTCACCACACCTGTaGTACCTCTGTCCCATGAGA +
Preference number: 4 (lower is better)
Translates to: VGLNRDSTLLRLLRPVSGHSPHL*YLCPMR
Trigger: TCTCATGGGACAGAGGTATCACAGGTGTGGTGAATG...ACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTTCAGCCCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp AGGTCTGCCCGTCACAAGCATGCTGGGGTAAATGGTAAACGCAGTATGATTCTGGGTGAGCTGTTGGGCTaGACAGAGACAGCACATTGC +
Preference number: 4 (lower is better)
Translates to: RSARHKHAGVNGKRSMILGELLG*TETAHC
Trigger: GCAATGTGCTGTCTCTGTTCAGCCCAACAGCTCACC...CAGAATCATACTGCGTTTACCATTTACCCCAGCATGCTTGTGACGGGCAGACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR TCA 90 bp CAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTGCTGCACCCTTCTGTGTCCTCTTaGACAAAGCTGATTATTTCC +
Preference number: 4 (lower is better)
Translates to: QWRVRFSLQGKAFLHLLHPSVSS*TKLIIS
Trigger: GGAAATAATCAGCTTTGTTCAAGAGGACACAGAAGG...GTGCAGCAGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR TCA 90 bp GTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCCCTTCTGTGTCCTCTTaGACAAAGCTGATTATTTCC +
Preference number: 4 (lower is better)
Translates to: VSGVKFPMAGKVQPPGEGPSVSS*TKLIIS
Trigger: GGAAATAATCAGCTTTGTTCAAGAGGACACAGAAGG...GCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR TCA 90 bp AGGCCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGACTAATGTTCTCCCCTaGGCAAATTTCGAGACACTT +
Preference number: 4 (lower is better)
Translates to: RPVSGVKFPMAGKVQPPGTNVLP*ANFETL
Trigger: AAGTGTCTCGAAATTTGCTCAGGGGAGAACATTAGT...CCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS-3UTR GCA 90 bp AACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGTGAAATTCAGGCACTTCCGTCCCTaGAGAGCATCAGACGCGTCT +
Preference number: 4 (lower is better)
Translates to: NRDSTLLRLLRPVSGVKFRHFRP*RASDAS
Trigger: AGACGCGTCTGATGCTCTGCAGGGACGGAAGTGCCT...GAATTTCACACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp TGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGTTTTCACAGAGTCTCTaGCCTCCTTCCTTGGGAAAA +
Preference number: 4 (lower is better)
Translates to: WLLPEFHSRVSCWAEQRQFSQSL*PPSLGK
Trigger: TTTTCCCAAGGAAGGAGGGCAGAGACTCTGTGAAAA...CTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp ATGGTTCCCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGTTTTCACAGAGTCTCTaGCCTCCTTCCTTGGGAAAA +
Preference number: 4 (lower is better)
Translates to: MVPSQWLLPEFHSRVSCWFSQSL*PPSLGK
Trigger: TTTTCCCAAGGAAGGAGGGCAGAGACTCTGTGAAAA...CCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGGAACCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp ATGGTTCCCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGTCTCTGCAGGCTATTTaGAGAATCCTTCTGTGTCCT +
Preference number: 4 (lower is better)
Translates to: MVPSQWLLPEFHSRVSCWSLQAI*RILLCP
Trigger: AGGACACAGAAGGATTCTGCAAATAGCCTGCAGAGA...CCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGGAACCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR GCA 90 bp ATGGTTCCCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGACACAGGTAAGTCTCTaGAGGCTATTTGCAGAATCC +
Preference number: 4 (lower is better)
Translates to: MVPSQWLLPEFHSRVSCWTQVSL*RLFAES
Trigger: GGATTCTGCAAATAGCCTGCAGAGACTTACCTGTGT...CCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGGAACCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR GCA 90 bp CAGTTAATGTTGCCAGTTTTGAACCCAGCTTTGACATCGTGCCCTTCCCCGATGCCAGCTTTGACATCGTaGCCTTCCCCGATGTCCACT +
Preference number: 4 (lower is better)
Translates to: QLMLPVLNPALTSCPSPMPALTS*PSPMST
Trigger: AGTGGACATCGGGGAAGGGCACGATGTCAAAGCTGG...CATCGGGGAAGGGCACGATGTCAAAGCTGGGTTCAAAACTGGCAACATTAACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR CCA 90 bp AGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGGGCTGGTTCTGGTGGGCCTCTCTTTCTGTaGCTGAAGTCATATCCACCT +
Preference number: 4 (lower is better)
Translates to: SLCPPSLGKVSLHWAGSGGPLFL*LKSYPP
Trigger: AGGTGGATATGACTTCAGCCACAGAAAGAGAGGCCC...ACCAGAACCAGCCCAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAAGTATGGTTTCTGCCTaGCTTTTCCCCCATGGTATT +
Preference number: 4 (lower is better)
Translates to: PVSGVKFPMAGKVQPPGESMVSA*LFPHGI
Trigger: AATACCATGGGGGAAAAGCCAGGCAGAAACCATACT...TTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp ACAGAGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGGGCTGGTTCCCATTGGGCTGGTTCTaGTGCTGGTCAAAGTCTGTA +
Preference number: 4 (lower is better)
Translates to: TESLPSFLGKSFPPLGWFPLGWF*CWSKSV
Trigger: TACAGACTTTGACCAGCACCAGAACCAGCCCAATGG...GAACCAGCCCAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp AATGGTAAACGCAGTATGATTCTGCCAGATGGTAGGAGCAGATGGCTCCTGCCCTCTAGGGTGAGCTGTTaGGCTGAACAGAGACAGCAC +
Preference number: 4 (lower is better)
Translates to: NGKRSMILPDGRSRWLLPSRVSC*AEQRQH
Trigger: GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGA...GGGCAGGAGCCATCTGCTCCTACCATCTGGCAGAATCATACTGCGTTTACCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR CCA 90 bp CAGGCCTTTATTATCATGAGCAATGTGAAGCAGGCAGTTCCAGAGCTGGGTGACATGGTTCCCTCCCAATaGCTGCTCCCAGAGTTCCAC +
Preference number: 4 (lower is better)
Translates to: QAFIIMSNVKQAVPELGDMVPSQ*LLPEFH
Trigger: GTGGAACTCTGGGAGCAGCCATTGGGAGGGAACCAT...GTCACCCAGCTCTGGAACTGCCTGCTTCACATTGCTCATGATAATAAAGGCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR CCA 90 bp AAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTCCCTGCCATTACTCTTaGTACATCCACCACCAAAGC +
Preference number: 4 (lower is better)
Translates to: KFPMAGKVQPPGEGFPASPCHYS*YIHHQS
Trigger: GCTTTGGTGGTGGATGTACCAAGAGTAATGGCAGGG...AGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS-3UTR CCA 90 bp CAGTTAATGTTGCCAGTTTTGAACCCAGCTTTGACATCGTGCCCTTCCCCGATGGAGGTAGTGAGCCTCTaGAGGTCATACCATGGGGGA +
Preference number: 4 (lower is better)
Translates to: QLMLPVLNPALTSCPSPMEVVSL*RSYHGG
Trigger: TCCCCCATGGTATGACCTCCAGAGGCTCACTACCTC...CATCGGGGAAGGGCACGATGTCAAAGCTGGGTTCAAAACTGGCAACATTAACTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR TCA 90 bp CAGGCCTTTATTATCATGAGCAATGTGAAGCAGGCAGTTCCAGAGCTGGGTGACCATATGTCACATGGGTaGGACTCCAGCTCTGCCATG +
Preference number: 4 (lower is better)
Translates to: QAFIIMSNVKQAVPELGDHMSHG*DSSSAM
Trigger: CATGGCAGAGCTGGAGTCTCACCCATGTGACATATG...GTCACCCAGCTCTGGAACTGCCTGCTTCACATTGCTCATGATAATAAAGGCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR TCA 90 bp AGGTCTGCCCGTCACAAGCATGCTGGGGTAAATGGTAAACGCAGTATGATTCTGAGTCTTTCACCCGTGTaGACTCGCCTGTGCTCAATC +
Preference number: 4 (lower is better)
Translates to: RSARHKHAGVNGKRSMILSLSPV*TRLCSI
Trigger: GATTGAGCACAGGCGAGTTCACACGGGTGAAAGACT...CAGAATCATACTGCGTTTACCATTTACCCCAGCATGCTTGTGACGGGCAGACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR TCA 90 bp CTGCACTCATTAACTACTGCTAGTTCCCCACCATATAGTAAGTCAGGGGCATTGGGCCTGTGTCCGGTGTaGAATTCCCAATGGCGGGTA +
Preference number: 4 (lower is better)
Translates to: LHSLTTASSPPYSKSGALGLCPV*NSQWRV
Trigger: TACCCGCCATTGGGAATTTCACACCGGACACAGGCC...CAATGCCCCTGACTTACTATATGGTGGGGAACTAGCAGTAGTTAATGAGTGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp CCCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAAGCTACAAAAATGCTCTaGTCAGAAGATACCTCTTCA +
Preference number: 4 (lower is better)
Translates to: PSQWLLPEFHSRVSCWAEATKML*SEDTSS
Trigger: TGAAGAGGTATCTTCTGAGCAGAGCATTTTTGTAGC...TTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp ATGGTTCCCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGCTCCTGCTACAAAAATaGTCTGCTCAGAAGATACCT +
Preference number: 4 (lower is better)
Translates to: MVPSQWLLPEFHSRVSCWLLLQK*SAQKIP
Trigger: AGGTATCTTCTGAGCAGAGCATTTTTGTAGCAGGAG...CCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGGAACCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp GGGAGAGAAGAGAGGTCTGCCCGTCACAAGCATGCTGGGGTAAATGGTAAACGCACACAGGTAAGTCTCTaGAGGCTATTTGCAGAATCC +
Preference number: 4 (lower is better)
Translates to: GREERSARHKHAGVNGKRTQVSL*RLFAES
Trigger: GGATTCTGCAAATAGCCTGCAGAGACTTACCTGTGT...GCGTTTACCATTTACCCCAGCATGCTTGTGACGGGCAGACCTCTCTTCTCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR GCA 90 bp AATGGTAAACGCAGTATGATTCTGCCAGATGGTAGGAGCAGATGGCTCCTGCCCGACAACTTCTCAGCCTaGCATTCCAGTCACAGTTCC +
Preference number: 4 (lower is better)
Translates to: NGKRSMILPDGRSRWLLPDNFSA*HSSHSS
Trigger: GGAACTGTGACTGGAATGGCAGGCTGAGAAGTTGTC...GGGCAGGAGCCATCTGCTCCTACCATCTGGCAGAATCATACTGCGTTTACCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS-3UTR CCA 90 bp CACAAGCATGCTGGGGTAAATGGTAAACGCAGTATGATTCTGCCAGATGGTAGGGGTCTAAGTCCCCTCTaGGCCTCTCTTTCTGTGGCT +
Preference number: 4 (lower is better)
Translates to: HKHAGVNGKRSMILPDGRGLSPL*ASLSVA
Trigger: AGCCACAGAAAGAGAGGCCCAGAGGGGACTTAGACC...CCTACCATCTGGCAGAATCATACTGCGTTTACCATTTACCCCAGCATGCTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR CCA 90 bp AAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTCTGGCTTTTCCCCCATaGTATTTAGCCAGGTGTAAG +
Preference number: 4 (lower is better)
Translates to: KFPMAGKVQPPGEGFPASLAFPP*YLARCK
Trigger: CTTACACCTGGCTAAATACCATGGGGGAAAAGCCAG...AGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp AAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTGAAGAAGGCCAGATGTaGCTGAAAAGTCTCTCCTAC +
Preference number: 4 (lower is better)
Translates to: KFPMAGKVQPPGEGFPASEEGQM*LKSLSY
Trigger: GTAGGAGAGACTTTTCAGCCACATCTGGCCTTCTTC...AGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp AGGTCTGCCCGTCACAAGCATGCTGGGGTAAATGGTAAACGCAGTATGATTCTGCTCTCTTTCTGTGGCTaGAGTCATATCCACCTGGTC +
Preference number: 4 (lower is better)
Translates to: RSARHKHAGVNGKRSMILLSFCG*SHIHLV
Trigger: GACCAGGTGGATATGACTTCAGCCACAGAAAGAGAG...CAGAATCATACTGCGTTTACCATTTACCCCAGCATGCTTGTGACGGGCAGACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR TCA 90 bp CAGCTTTTCACAGAGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGCATTCACCACACCTGTaGTACCTCTGTCCCATGAGA +
Preference number: 4 (lower is better)
Translates to: QLFTESLPSFLGKSFPPLHSPHL*YLCPMR
Trigger: TCTCATGGGACAGAGGTATCACAGGTGTGGTGAATG...CAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACTCTGTGAAAAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp AACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGTGAAATTCAGTCTTTCACCCGTGTaGACTCGCCTGTGCTCAATC +
Preference number: 4 (lower is better)
Translates to: NRDSTLLRLLRPVSGVKFSLSPV*TRLCSI
Trigger: GATTGAGCACAGGCGAGTTCACACGGGTGAAAGACT...GAATTTCACACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp AACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGTGAAATTCGTGTCTGTTTCCGGATaGATTCTCTCCCGCACTCAC +
Preference number: 4 (lower is better)
Translates to: NRDSTLLRLLRPVSGVKFVSVSG*ILSRTH
Trigger: GTGAGTGCGGGAGAGAATTCATCCGGAAACAGACAC...GAATTTCACACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp AAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTATGGTAAACGCAGTATaGTTCTGCCAGATGGTAGGA +
Preference number: 4 (lower is better)
Translates to: KFPMAGKVQPPGEGFPASMVNAV*FCQMVG
Trigger: TCCTACCATCTGGCAGAATCATACTGCGTTTACCAT...AGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR TCA 90 bp CTGCACTCATTAACTACTGCTAGTTCCCCACCATATAGTAAGTCAGGGGCATTGACCCCTAGTGGGCTGTaGGACCACTCACAACACCTT +
Preference number: 4 (lower is better)
Translates to: LHSLTTASSPPYSKSGALTPSGL*DHSQHL
Trigger: AAGGTGTTGTGAGTGGTCTCACAGCCCACTAGGGGT...CAATGCCCCTGACTTACTATATGGTGGGGAACTAGCAGTAGTTAATGAGTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR GCA 90 bp CAGCTTTTCACAGAGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGCACAAGTATGGTTTCTaGCTGGCTTTTCCCCCATGG +
Preference number: 4 (lower is better)
Translates to: QLFTESLPSFLGKSFPPLHKYGF*LAFPPW
Trigger: CCATGGGGGAAAAGCCAGGCAGAAACCATACTTGTG...CAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACTCTGTGAAAAGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp CACAAGCATGCTGGGGTAAATGGTAAACGCAGTATGATTCTGCCAGATGGTAGGTTCCCTCCCAATGGCTaGTCCCAGAGTTCCACTCTA +
Preference number: 4 (lower is better)
Translates to: HKHAGVNGKRSMILPDGRFPPNG*SQSSTL
Trigger: TAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGGAA...CCTACCATCTGGCAGAATCATACTGCGTTTACCATTTACCCCAGCATGCTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR GCA 90 bp ACAGAGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGGGCTGGTTCCAGTTCCTCAAACTCTaGTCTGTGTTGATGAGAACC +
Preference number: 4 (lower is better)
Translates to: TESLPSFLGKSFPPLGWFQFLKL*SVLMRT
Trigger: GGTTCTCATCAACACAGAGCAGAGTTTGAGGAACTG...GAACCAGCCCAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS-3UTR CCA 90 bp CAGTTAATGTTGCCAGTTTTGAACCCAGCTTTGACATCGTGCCCTTCCCCGATGGGGCCTCTCTTTCTGTaGCTGAAGTCATATCCACCT +
Preference number: 4 (lower is better)
Translates to: QLMLPVLNPALTSCPSPMGPLFL*LKSYPP
Trigger: AGGTGGATATGACTTCAGCCACAGAAAGAGAGGCCC...CATCGGGGAAGGGCACGATGTCAAAGCTGGGTTCAAAACTGGCAACATTAACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR CCA 90 bp AACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGTGAAATTCTGTGAGGGTCTTCTCTaGCACATGGACTCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: NRDSTLLRLLRPVSGVKFCEGLL*HMDSAA
Trigger: AGCTGCAGAGTCCATGTGCCAGAGAAGACCCTCACA...GAATTTCACACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp GCCATTACTCTTGGTACATCCACCACCAAAGCATTCCTGGAATCCACTGCAGTATACCTTTCCCACATGTaGGGGTCTTCTCTGGCACAT +
Preference number: 4 (lower is better)
Translates to: AITLGTSTTKAFLESTAVYLSHM*GSSLAH
Trigger: ATGTGCCAGAGAAGACCCTCACATGTGGGAAAGGTA...TACTGCAGTGGATTCCAGGAATGCTTTGGTGGTGGATGTACCAAGAGTAATGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS-3UTR TCA 90 bp CATATAGTAAGTCAGGGGCATTGGCCTAAGACTTTCCCCCACATTTGCTACACTAGTCTTTCACCCGTGTaGACTCGCCTGTGCTCAATC +
Preference number: 4 (lower is better)
Translates to: HIVSQGHWPKTFPHICYTSLSPV*TRLCSI
Trigger: GATTGAGCACAGGCGAGTTCACACGGGTGAAAGACT...AGTGTAGCAAATGTGGGGGAAAGTCTTAGGCCAATGCCCCTGACTTACTATATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp CTGCACTCATTAACTACTGCTAGTTCCCCACCATATAGTAAGTCAGGGGCATTGAGTTCCACTCTAGGGTaGGCTGTTGGGCTGAACAGA +
Preference number: 4 (lower is better)
Translates to: LHSLTTASSPPYSKSGALSSTLG*AVGLNR
Trigger: TCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACT...CAATGCCCCTGACTTACTATATGGTGGGGAACTAGCAGTAGTTAATGAGTGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp CAGCTTTTCACAGAGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGAGTTTCACTTCTTACTaGTGGTTCCCTCCCAATGGC +
Preference number: 4 (lower is better)
Translates to: QLFTESLPSFLGKSFPPLSFTSY*WFPPNG
Trigger: GCCATTGGGAGGGAACCATCAGTAAGAAGTGAAACT...CAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACTCTGTGAAAAGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp AGGTCTGCCCGTCACAAGCATGCTGGGGTAAATGGTAAACGCAGTATGATTCTGGTGCAACACAGCTGCTaGAAGCATCTCACATACTTG +
Preference number: 4 (lower is better)
Translates to: RSARHKHAGVNGKRSMILVQHSC*KHLTYL
Trigger: CAAGTATGTGAGATGCTTTCAGCAGCTGTGTTGCAC...CAGAATCATACTGCGTTTACCATTTACCCCAGCATGCTTGTGACGGGCAGACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR GCA 90 bp CAGGCCTTTATTATCATGAGCAATGTGAAGCAGGCAGTTCCAGAGCTGGGTGACTCATCCTCCACTCCATaGCAACAACCAGGTCTAAGT +
Preference number: 4 (lower is better)
Translates to: QAFIIMSNVKQAVPELGDSSSTP*QQPGLS
Trigger: ACTTAGACCTGGTTGTTGGCATGGAGTGGAGGATGA...GTCACCCAGCTCTGGAACTGCCTGCTTCACATTGCTCATGATAATAAAGGCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR GCA 90 bp GGGAGAGAAGAGAGGTCTGCCCGTCACAAGCATGCTGGGGTAAATGGTAAACGCGCTACAAAAATGCTCTaGTCAGAAGATACCTCTTCA +
Preference number: 4 (lower is better)
Translates to: GREERSARHKHAGVNGKRATKML*SEDTSS
Trigger: TGAAGAGGTATCTTCTGAGCAGAGCATTTTTGTAGC...GCGTTTACCATTTACCCCAGCATGCTTGTGACGGGCAGACCTCTCTTCTCTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR GCA 90 bp AGTCTCTGCCCTCCTTCCTTGGGAAAAGTTTCCCTCCATTGGGCTGGTTCTGGTCTCCTGCTACAAAAATaGTCTGCTCAGAAGATACCT +
Preference number: 4 (lower is better)
Translates to: SLCPPSLGKVSLHWAGSGLLLQK*SAQKIP
Trigger: AGGTATCTTCTGAGCAGAGCATTTTTGTAGCAGGAG...ACCAGAACCAGCCCAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp AATGGTAAACGCAGTATGATTCTGCCAGATGGTAGGAGCAGATGGCTCCTGCCCTTTTCACAGAGTCTCTaGCCTCCTTCCTTGGGAAAA +
Preference number: 4 (lower is better)
Translates to: NGKRSMILPDGRSRWLLPFSQSL*PPSLGK
Trigger: TTTTCCCAAGGAAGGAGGGCAGAGACTCTGTGAAAA...GGGCAGGAGCCATCTGCTCCTACCATCTGGCAGAATCATACTGCGTTTACCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR GCA 90 bp CTCACAGGGAATCTCCCCAGTGGGAATGTCCATATCTATGAAGTTTCACTTCTTGAGAGAAGAGAGGTCTaGCCGTCACAAGCATGCTGG +
Preference number: 4 (lower is better)
Translates to: LTGNLPSGNVHIYEVSLLERREV*PSQACW
Trigger: CCAGCATGCTTGTGACGGGCAGACCTCTCTTCTCTC...AAGAAGTGAAACTTCATAGATATGGACATTCCCACTGGGGAGATTCCCTGTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR CCA 90 bp CAAGGGGCTAACAAACTAGAAATGATATATCTTCGTGTCAAGAACAGGAAAGGACGCGTCTCGGGACACTaGGGACAACATCTCCTCCGC +
Preference number: 4 (lower is better)
Translates to: QGANKLEMIYLRVKNRKGRVSGH*GQHLLR
Trigger: GCGGAGGAGATGTTGTCCCCAGTGTCCCGAGACGCG...TCCTTTCCTGTTCTTGACACGAAGATATATCATTTCTAGTTTGTTAGCCCCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR CCA 90 bp AACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGTGAAATTCTGCCCCACACAAGTATaGTTTCTGCCTGGCTTTTCC +
Preference number: 4 (lower is better)
Translates to: NRDSTLLRLLRPVSGVKFCPTQV*FLPGFS
Trigger: GGAAAAGCCAGGCAGAAACCATACTTGTGTGGGGCA...GAATTTCACACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CATATAGTAAGTCAGGGGCATTGGCCTAAGACTTTCCCCCACATTTGCTACACTTGTGAGGGTCTTCTCTaGCACATGGACTCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: HIVSQGHWPKTFPHICYTCEGLL*HMDSAA
Trigger: AGCTGCAGAGTCCATGTGCCAGAGAAGACCCTCACA...AGTGTAGCAAATGTGGGGGAAAGTCTTAGGCCAATGCCCCTGACTTACTATATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CTGCACTCATTAACTACTGCTAGTTCCCCACCATATAGTAAGTCAGGGGCATTGTGTGAGGGTCTTCTCTaGCACATGGACTCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: LHSLTTASSPPYSKSGALCEGLL*HMDSAA
Trigger: AGCTGCAGAGTCCATGTGCCAGAGAAGACCCTCACA...CAATGCCCCTGACTTACTATATGGTGGGGAACTAGCAGTAGTTAATGAGTGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CATATAGTAAGTCAGGGGCATTGGCCTAAGACTTTCCCCCACATTTGCTACACTGTAAGTCAGGGGCATTaGCCTAAGACTTTCCCCCAC +
Preference number: 4 (lower is better)
Translates to: HIVSQGHWPKTFPHICYTVSQGH*PKTFPH
Trigger: GTGGGGGAAAGTCTTAGGCCAATGCCCCTGACTTAC...AGTGTAGCAAATGTGGGGGAAAGTCTTAGGCCAATGCCCCTGACTTACTATATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CAGGCCTTTATTATCATGAGCAATGTGAAGCAGGCAGTTCCAGAGCTGGGTGACAGGCAGTTCCAGAGCTaGGTGACTTGGATATTGGAT +
Preference number: 4 (lower is better)
Translates to: QAFIIMSNVKQAVPELGDRQFQS*VTWILD
Trigger: ATCCAATATCCAAGTCACCCAGCTCTGGAACTGCCT...GTCACCCAGCTCTGGAACTGCCTGCTTCACATTGCTCATGATAATAAAGGCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR TCA 90 bp CTGCACTCATTAACTACTGCTAGTTCCCCACCATATAGTAAGTCAGGGGCATTGCATTCACCACACCTGTaGTACCTCTGTCCCATGAGA +
Preference number: 4 (lower is better)
Translates to: LHSLTTASSPPYSKSGALHSPHL*YLCPMR
Trigger: TCTCATGGGACAGAGGTATCACAGGTGTGGTGAATG...CAATGCCCCTGACTTACTATATGGTGGGGAACTAGCAGTAGTTAATGAGTGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp CTGCACTCATTAACTACTGCTAGTTCCCCACCATATAGTAAGTCAGGGGCATTGCACAAGTATGGTTTCTaGCTGGCTTTTCCCCCATGG +
Preference number: 4 (lower is better)
Translates to: LHSLTTASSPPYSKSGALHKYGF*LAFPPW
Trigger: CCATGGGGGAAAAGCCAGGCAGAAACCATACTTGTG...CAATGCCCCTGACTTACTATATGGTGGGGAACTAGCAGTAGTTAATGAGTGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp CTGCACTCATTAACTACTGCTAGTTCCCCACCATATAGTAAGTCAGGGGCATTGTTGGGCTGGTTCTGGTaGTGGTCAAAGTCTGTACTG +
Preference number: 4 (lower is better)
Translates to: LHSLTTASSPPYSKSGALLGWFW*WSKSVL
Trigger: CAGTACAGACTTTGACCAGCACCAGAACCAGCCCAA...CAATGCCCCTGACTTACTATATGGTGGGGAACTAGCAGTAGTTAATGAGTGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CTGCACTCATTAACTACTGCTAGTTCCCCACCATATAGTAAGTCAGGGGCATTGCCATTGGGCTGGTTCTaGTGCTGGTCAAAGTCTGTA +
Preference number: 4 (lower is better)
Translates to: LHSLTTASSPPYSKSGALPLGWF*CWSKSV
Trigger: TACAGACTTTGACCAGCACCAGAACCAGCCCAATGG...CAATGCCCCTGACTTACTATATGGTGGGGAACTAGCAGTAGTTAATGAGTGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CATATAGTAAGTCAGGGGCATTGGCCTAAGACTTTCCCCCACATTTGCTACACTAGCTTAGTGCTCTTGTaGGGCTTCATGCTGCTGAGA +
Preference number: 4 (lower is better)
Translates to: HIVSQGHWPKTFPHICYTSLVLL*GFMLLR
Trigger: TCTCAGCAGCATGAAGCCCCACAAGAGCACTAAGCT...AGTGTAGCAAATGTGGGGGAAAGTCTTAGGCCAATGCCCCTGACTTACTATATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp AACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGTGAAATTCGGTCAAAGTCTGTACTaGACCAGAATTGCTTTCCAC +
Preference number: 4 (lower is better)
Translates to: NRDSTLLRLLRPVSGVKFGQSLY*TRIAFH
Trigger: GTGGAAAGCAATTCTGGTTCAGTACAGACTTTGACC...GAATTTCACACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp CAGTTCCAGAGCTGGGTGACTTGGATATTGGATATATCCATAACGAGCATCATAAGTTCCACTCTAGGGTaGGCTGTTGGGCTGAACAGA +
Preference number: 4 (lower is better)
Translates to: QFQSWVTWILDISITSIISSTLG*AVGLNR
Trigger: TCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACT...TATGATGCTCGTTATGGATATATCCAATATCCAAGTCACCCAGCTCTGGAACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR TCA 90 bp CTGCACTCATTAACTACTGCTAGTTCCCCACCATATAGTAAGTCAGGGGCATTGAGTTTCACTTCTTACTaGTGGTTCCCTCCCAATGGC +
Preference number: 4 (lower is better)
Translates to: LHSLTTASSPPYSKSGALSFTSY*WFPPNG
Trigger: GCCATTGGGAGGGAACCATCAGTAAGAAGTGAAACT...CAATGCCCCTGACTTACTATATGGTGGGGAACTAGCAGTAGTTAATGAGTGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CATATAGTAAGTCAGGGGCATTGGCCTAAGACTTTCCCCCACATTTGCTACACTTCTGCCCTCCTTCCTTaGGAAAAGTTTCCCTCCATT +
Preference number: 4 (lower is better)
Translates to: HIVSQGHWPKTFPHICYTSALLP*EKFPSI
Trigger: AATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGA...AGTGTAGCAAATGTGGGGGAAAGTCTTAGGCCAATGCCCCTGACTTACTATATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CTGCACTCATTAACTACTGCTAGTTCCCCACCATATAGTAAGTCAGGGGCATTGGTCTTCTCTGGCACATaGACTCTGCAGCTTTTCACA +
Preference number: 4 (lower is better)
Translates to: LHSLTTASSPPYSKSGALVFSGT*TLQLFT
Trigger: TGTGAAAAGCTGCAGAGTCCATGTGCCAGAGAAGAC...CAATGCCCCTGACTTACTATATGGTGGGGAACTAGCAGTAGTTAATGAGTGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CTGCACTCATTAACTACTGCTAGTTCCCCACCATATAGTAAGTCAGGGGCATTGGAAGAAGGCCAGATGTaGCTGAAAAGTCTCTCCTAC +
Preference number: 4 (lower is better)
Translates to: LHSLTTASSPPYSKSGALEEGQM*LKSLSY
Trigger: GTAGGAGAGACTTTTCAGCCACATCTGGCCTTCTTC...CAATGCCCCTGACTTACTATATGGTGGGGAACTAGCAGTAGTTAATGAGTGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp CATATAGTAAGTCAGGGGCATTGGCCTAAGACTTTCCCCCACATTTGCTACACTGGTCAAAGTCTGTACTaGACCAGAATTGCTTTCCAC +
Preference number: 4 (lower is better)
Translates to: HIVSQGHWPKTFPHICYTGQSLY*TRIAFH
Trigger: GTGGAAAGCAATTCTGGTTCAGTACAGACTTTGACC...AGTGTAGCAAATGTGGGGGAAAGTCTTAGGCCAATGCCCCTGACTTACTATATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR TCA 90 bp CAGTTCCAGAGCTGGGTGACTTGGATATTGGATATATCCATAACGAGCATCATAGATACCTCTGTCCCATaGGAAAGCCACTCACAAGCT +
Preference number: 4 (lower is better)
Translates to: QFQSWVTWILDISITSIIDTSVP*ESHSQA
Trigger: AGCTTGTGAGTGGCTTTCTCATGGGACAGAGGTATC...TATGATGCTCGTTATGGATATATCCAATATCCAAGTCACCCAGCTCTGGAACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR GCA 90 bp AACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGTGAAATTCCTCCTGCTACAAAAATaGTCTGCTCAGAAGATACCT +
Preference number: 4 (lower is better)
Translates to: NRDSTLLRLLRPVSGVKFLLLQK*SAQKIP
Trigger: AGGTATCTTCTGAGCAGAGCATTTTTGTAGCAGGAG...GAATTTCACACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR GCA 90 bp CACAAGCATGCTGGGGTAAATGGTAAACGCAGTATGATTCTGCCAGATGGTAGGGAATTGCTTTCCACATaGCCCACACAAGTATGGTTT +
Preference number: 4 (lower is better)
Translates to: HKHAGVNGKRSMILPDGRELLST*PTQVWF
Trigger: AAACCATACTTGTGTGGGGCATGTGGAAAGCAATTC...CCTACCATCTGGCAGAATCATACTGCGTTTACCATTTACCCCAGCATGCTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR GCA 90 bp CAGTTCCAGAGCTGGGTGACTTGGATATTGGATATATCCATAACGAGCATCATATTGGGCTGGTTCTGGTaGTGGTCAAAGTCTGTACTG +
Preference number: 4 (lower is better)
Translates to: QFQSWVTWILDISITSIILGWFW*WSKSVL
Trigger: CAGTACAGACTTTGACCAGCACCAGAACCAGCCCAA...TATGATGCTCGTTATGGATATATCCAATATCCAAGTCACCCAGCTCTGGAACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR CCA 90 bp CAGTTCCAGAGCTGGGTGACTTGGATATTGGATATATCCATAACGAGCATCATATGCCCCACACAAGTATaGTTTCTGCCTGGCTTTTCC +
Preference number: 4 (lower is better)
Translates to: QFQSWVTWILDISITSIICPTQV*FLPGFS
Trigger: GGAAAAGCCAGGCAGAAACCATACTTGTGTGGGGCA...TATGATGCTCGTTATGGATATATCCAATATCCAAGTCACCCAGCTCTGGAACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR CCA 90 bp GAAATGATATATCTTCGTGTCAAGAACAGGAAAGGACAGATAGAAACGCTGTGTACGCTGTGTGGCCACTaGCCCTGGAAACAAACACTG +
Preference number: 4 (lower is better)
Translates to: EMIYLRVKNRKGQIETLCTLCGH*PWKQTL
Trigger: CAGTGTTTGTTTCCAGGGCCAGTGGCCACACAGCGT...ACACAGCGTTTCTATCTGTCCTTTCCTGTTCTTGACACGAAGATATATCATTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR TCA 90 bp CTCACAGGGAATCTCCCCAGTGGGAATGTCCATATCTATGAAGTTTCACTTCTTATGGTAAACGCAGTATaGTTCTGCCAGATGGTAGGA +
Preference number: 4 (lower is better)
Translates to: LTGNLPSGNVHIYEVSLLMVNAV*FCQMVG
Trigger: TCCTACCATCTGGCAGAATCATACTGCGTTTACCAT...AAGAAGTGAAACTTCATAGATATGGACATTCCCACTGGGGAGATTCCCTGTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR GCA 90 bp CATATAGTAAGTCAGGGGCATTGGCCTAAGACTTTCCCCCACATTTGCTACACTGAATTGCTTTCCACATaGCCCACACAAGTATGGTTT +
Preference number: 4 (lower is better)
Translates to: HIVSQGHWPKTFPHICYTELLST*PTQVWF
Trigger: AAACCATACTTGTGTGGGGCATGTGGAAAGCAATTC...AGTGTAGCAAATGTGGGGGAAAGTCTTAGGCCAATGCCCCTGACTTACTATATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CCA 90 bp CAGTTCCAGAGCTGGGTGACTTGGATATTGGATATATCCATAACGAGCATCATAGAAGAAGGCCAGATGTaGCTGAAAAGTCTCTCCTAC +
Preference number: 4 (lower is better)
Translates to: QFQSWVTWILDISITSIIEEGQM*LKSLSY
Trigger: GTAGGAGAGACTTTTCAGCCACATCTGGCCTTCTTC...TATGATGCTCGTTATGGATATATCCAATATCCAAGTCACCCAGCTCTGGAACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR CCA 90 bp CAAGGGGCTAACAAACTAGAAATGATATATCTTCGTGTCAAGAACAGGAAAGGAGATAGAAACGCTGTGTaGCCACTGGCCCTGGAAACA +
Preference number: 4 (lower is better)
Translates to: QGANKLEMIYLRVKNRKGDRNAV*PLALET
Trigger: TGTTTCCAGGGCCAGTGGCCACACAGCGTTTCTATC...TCCTTTCCTGTTCTTGACACGAAGATATATCATTTCTAGTTTGTTAGCCCCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR CCA 90 bp TGCTATGAAAAATGTATCCAGTCCCAGGAAAATCCAACTACAAGTGAGCAGCTGATGCATATTTACGGGTaGGAAGGGGCAACCTCATTG +
Preference number: 4 (lower is better)
Translates to: CYEKCIQSQENPTTSEQLMHIYG*EGATSL
Trigger: CAATGAGGTTGCCCCTTCCCACCCGTAAATATGCAT...CAGCTGCTCACTTGTAGTTGGATTTTCCTGGGACTGGATACATTTTTCATAGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000596939.1
3UTR CAA 72 bp AGCAATGTGAAGCAGGCAGTTCCAGAGCTGGGTGACTaGGATATTGGATATATCCATAACGAGCATCATATG +
Preference number: 4 (lower is better)
Translates to: SNVKQAVPELGD*DIGYIHNEHHM
Trigger: CATATGATGCTCGTTATGGATATATCCAATATCCAAGTCACCCAGCTCTGGAACTGCCTGCTTCACATTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR CCA 90 bp CATATAGTAAGTCAGGGGCATTGGCCTAAGACTTTCCCCCACATTTGCTACACTCAGAGCTGGGTGACTTaGATATTGGATATATCCATA +
Preference number: 4 (lower is better)
Translates to: HIVSQGHWPKTFPHICYTQSWVT*ILDISI
Trigger: TATGGATATATCCAATATCCAAGTCACCCAGCTCTG...AGTGTAGCAAATGTGGGGGAAAGTCTTAGGCCAATGCCCCTGACTTACTATATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR CCA 90 bp CTCACAGGGAATCTCCCCAGTGGGAATGTCCATATCTATGAAGTTTCACTTCTTCAGAGCTGGGTGACTTaGATATTGGATATATCCATA +
Preference number: 4 (lower is better)
Translates to: LTGNLPSGNVHIYEVSLLQSWVT*ILDISI
Trigger: TATGGATATATCCAATATCCAAGTCACCCAGCTCTG...AAGAAGTGAAACTTCATAGATATGGACATTCCCACTGGGGAGATTCCCTGTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR GCA 90 bp CAGTTCCAGAGCTGGGTGACTTGGATATTGGATATATCCATAACGAGCATCATAGCTACAAAAATGCTCTaGTCAGAAGATACCTCTTCA +
Preference number: 4 (lower is better)
Translates to: QFQSWVTWILDISITSIIATKML*SEDTSS
Trigger: TGAAGAGGTATCTTCTGAGCAGAGCATTTTTGTAGC...TATGATGCTCGTTATGGATATATCCAATATCCAAGTCACCCAGCTCTGGAACTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR TCA 90 bp AGTGCTATGAAAAATGTATCCAGTCCCAGGAAAATCCAACTACAAGTGAGCAGCAAACAAACACTGATGTaGACAGTTAATGTTGCCAGT +
Preference number: 4 (lower is better)
Translates to: SAMKNVSSPRKIQLQVSSKQTLM*TVNVAS
Trigger: ACTGGCAACATTAACTGTTCACATCAGTGTTTGTTT...GCTGCTCACTTGTAGTTGGATTTTCCTGGGACTGGATACATTTTTCATAGCACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR TCA 90 bp CAAGGGGCTAACAAACTAGAAATGATATATCTTCGTGTCAAGAACAGGAAAGGAAAATCCAACTACAAGTaGGCAGCTGGTGTTCAAAGA +
Preference number: 4 (lower is better)
Translates to: QGANKLEMIYLRVKNRKGKSNYK*AAGVQR
Trigger: TCTTTGAACACCAGCTGCTCACTTGTAGTTGGATTT...TCCTTTCCTGTTCTTGACACGAAGATATATCATTTCTAGTTTGTTAGCCCCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR GCA 90 bp CCAGGATATAAGAATGGAACCAAACAAATGGCTTCCAGTAGGGCCTTGACTGTTTGTGCATTTGACACATaGAGGAATAAGTTCATGAAA +
Preference number: 4 (lower is better)
Translates to: PGYKNGTKQMASSRALTVCAFDT*RNKFMK
Trigger: TTTCATGAACTTATTCCTGCATGTGTCAAATGCACA...AACAGTCAAGGCCCTACTGGAAGCCATTTGTTTGGTTCCATTCTTATATCCTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR GCA 90 bp GAAATGATATATCTTCGTGTCAAGAACAGGAAAGGACAGATAGAAACGCTGTGTTTAGTGACTCGTGAGTaGTATGAAAAATGTATCCAG +
Preference number: 4 (lower is better)
Translates to: EMIYLRVKNRKGQIETLCLVTRE*YEKCIQ
Trigger: CTGGATACATTTTTCATAGCACTCACGAGTCACTAA...ACACAGCGTTTCTATCTGTCCTTTCCTGTTCTTGACACGAAGATATATCATTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR GCA 90 bp GAAATGATATATCTTCGTGTCAAGAACAGGAAAGGACAGATAGAAACGCTGTGTCAAATGCTGATTAAATaGATATTTACGGGTGGGAAG +
Preference number: 4 (lower is better)
Translates to: EMIYLRVKNRKGQIETLCQMLIK*IFTGGK
Trigger: CTTCCCACCCGTAAATATGCATTTAATCAGCATTTG...ACACAGCGTTTCTATCTGTCCTTTCCTGTTCTTGACACGAAGATATATCATTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS CCA 90 bp GCAGCACCCACCCGCGCGGAGTCCGTTAGCTCCGCCATAGGACCGTaGGCGCGGACAGCTGCCGGGAGCGGCAGGCGTCTCGATCGGGGA +
Preference number: 5 (lower is better)
Translates to: AAPTRAESVSSAIGP*ARTAAGSGRRLDRG
Trigger: TCCCCGATCGAGACGCCTGCCGCTCCCGGCAGCTGTCCGCGCCCACGGTCCTATGGCGGAGCTAACGGACTCCGCGCGGGTGGGTGCTGC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS CCA 90 bp ACCACACAGCCCCGCGCGGAGTCCGTTAGCTCCGCCATAGGACCGTaGGCGCGGACAGCTGCCGGGAGCGGCAGGCGTCTCGATCGGGGA +
Preference number: 5 (lower is better)
Translates to: TTQPRAESVSSAIGP*ARTAAGSGRRLDRG
Trigger: TCCCCGATCGAGACGCCTGCCGCTCCCGGCAGCTGTCCGCGCCCACGGTCCTATGGCGGAGCTAACGGACTCCGCGCGGGGCTGTGTGGT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000594803.1
CDS CCA 90 bp AATGTTCTCCCCCGCGCGGAGTCCGTTAGCTCCGCCATAGGACCGTaGGCGCGGACAGCTGCCGGGAGCGGCAGGCGTCTCGATCGGGGA +
Preference number: 5 (lower is better)
Translates to: NVLPRAESVSSAIGP*ARTAAGSGRRLDRG
Trigger: TCCCCGATCGAGACGCCTGCCGCTCCCGGCAGCTGTCCGCGCCCACGGTCCTATGGCGGAGCTAACGGACTCCGCGCGGGGGAGAACATT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000599961.1
CDS CCA 90 bp AAATGCAATTCCCGCGCGGAGTCCGTTAGCTCCGCCATAGGACCGTaGGCGCGGACAGCTGCCGGGAGCGGCAGGCGTCTCGATCGGGGA +
Preference number: 5 (lower is better)
Translates to: KCNSRAESVSSAIGP*ARTAAGSGRRLDRG
Trigger: TCCCCGATCGAGACGCCTGCCGCTCCCGGCAGCTGTCCGCGCCCACGGTCCTATGGCGGAGCTAACGGACTCCGCGCGGGAATTGCATTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000596939.1
ENST00000601584.1
CDS TCA 90 bp ACACAGGGGCTGCAGGCACTTTACGATTCGGAGTCGGAGAAAGGGTaGCTGAGGGCCCGGAGGACGCAGCACCCACCCGCGCGGAGTCCG +
Preference number: 5 (lower is better)
Translates to: TQGLQALYDSESEKG*LRARRTQHPPARSP
Trigger: CGGACTCCGCGCGGGTGGGTGCTGCGTCCTCCGGGCCCTCAGTCACCCTTTCTCCGACTCCGAATCGTAAAGTGCCTGCAGCCCCTGTGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS GCA 90 bp GGGAGCGGCAGGCGTCTCGATCGGGGACGCAGGCACTTCCGTCCCTaGAGAGCATCAGACGCGTCTCGGGACACTGGGGACAACATCTCC +
Preference number: 5 (lower is better)
Translates to: GSGRRLDRGRRHFRP*RASDASRDTGDNIS
Trigger: GGAGATGTTGTCCCCAGTGTCCCGAGACGCGTCTGATGCTCTGCAGGGACGGAAGTGCCTGCGTCCCCGATCGAGACGCCTGCCGCTCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000317398.10
ENST00000594803.1
ENST00000596939.1
ENST00000599961.1
ENST00000600125.5
ENST00000601584.1
CDS CCA 90 bp CAGGCACTTCCGTCCCTGCAGAGCATCAGACGCGTCTCGGGACACTaGGGACAACATCTCCTCCGCGCTTTCCCAACACCTCCACCTGCG +
Preference number: 5 (lower is better)
Translates to: QALPSLQSIRRVSGH*GQHLLRAFPTPPPA
Trigger: CGCAGGTGGAGGTGTTGGGAAAGCGCGGAGGAGATGTTGTCCCCAGTGTCCCGAGACGCGTCTGATGCTCTGCAGGGACGGAAGTGCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000317398.10
ENST00000594803.1
ENST00000596939.1
ENST00000599961.1
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CAA 90 bp CTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACAGAGACAGCACCTGTCTCCCAAATGTTaGGGGGTCAGCAGCACCCCC +
Preference number: 5 (lower is better)
Translates to: LLPEFHSRVSCWAEQRQHLSPKC*GVSSTP
Trigger: GGGGGTGCTGCTGACCCCCAAACATTTGGGAGACAG...GTGCTGTCTCTGTTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS-3UTR CAA 90 bp AGGCCTGTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGACAAGCTTAGTGCTCTaGTGGGGCTTCATGCTGCTG +
Preference number: 5 (lower is better)
Translates to: RPVSGVKFPMAGKVQPPGTSLVL*WGFMLL
Trigger: CAGCAGCATGAAGCCCCACAAGAGCACTAAGCTTGT...CCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACACAGGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CAA 90 bp GTGTCCGGTGTGAAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCAACAGAGACAGCACATaGCTTAGACTGCTAAGGCCT +
Preference number: 5 (lower is better)
Translates to: VSGVKFPMAGKVQPPGEGNRDST*LRLLRP
Trigger: AGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT...GCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTTCACACCGGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CAA 90 bp GTTGGGCTGAACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTACAAGCTTAGTGCTCTaGTGGGGCTTCATGCTGCTG +
Preference number: 5 (lower is better)
Translates to: VGLNRDSTLLRLLRPVSGTSLVL*WGFMLL
Trigger: CAGCAGCATGAAGCCCCACAAGAGCACTAAGCTTGT...ACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTTCAGCCCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CAA 90 bp AAATTCCCAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTACAAGCTTAGTGCTCTaGTGGGGCTTCATGCTGCTG +
Preference number: 5 (lower is better)
Translates to: KFPMAGKVQPPGEGFPASTSLVL*WGFMLL
Trigger: CAGCAGCATGAAGCCCCACAAGAGCACTAAGCTTGT...AGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTGGGAATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CAA 90 bp CCCTCCCAATGGCTGCTCCCAGAGTTCCACTCTAGGGTGAGCTGTTGGGCTGAACCAGAGCTGGGTGACTaGGATATTGGATATATCCAT +
Preference number: 5 (lower is better)
Translates to: PSQWLLPEFHSRVSCWAEPELGD*DIGYIH
Trigger: ATGGATATATCCAATATCCAAGTCACCCAGCTCTGG...TTCAGCCCAACAGCTCACCCTAGAGTGGAACTCTGGGAGCAGCCATTGGGAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR CAA 90 bp CAATGGCGGGTAAGGTTCAGCCTCCAGGGGAAGGCTTTCCTGCATCTGCTGCACCCAGAGCTGGGTGACTaGGATATTGGATATATCCAT +
Preference number: 5 (lower is better)
Translates to: QWRVRFSLQGKAFLHLLHPELGD*DIGYIH
Trigger: ATGGATATATCCAATATCCAAGTCACCCAGCTCTGG...GTGCAGCAGATGCAGGAAAGCCTTCCCCTGGAGGCTGAACCTTACCCGCCATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS GCA 90 bp CGACAACTTCTCAGCCTGCCATTCCAGTCACAGTTCCTCAAACTCTaGTCTGTGTTGATGAGAACCCTGTCTCCCAAATGTTTGGGGGTC +
Preference number: 5 (lower is better)
Translates to: RQLLSLPFQSQFLKL*SVLMRTLSPKCLGV
Trigger: GACCCCCAAACATTTGGGAGACAGGGTTCTCATCAACACAGAGCAGAGTTTGAGGAACTGTGACTGGAATGGCAGGCTGAGAAGTTGTCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS-3UTR CAA 90 bp CACAAGCATGCTGGGGTAAATGGTAAACGCAGTATGATTCTGCCAGATGGTAGGAAACTCTGCTCTGTGTaGATGAGAACCCTGTCTCCC +
Preference number: 5 (lower is better)
Translates to: HKHAGVNGKRSMILPDGRKLCSV*MRTLSP
Trigger: GGGAGACAGGGTTCTCATCAACACAGAGCAGAGTTT...CCTACCATCTGGCAGAATCATACTGCGTTTACCATTTACCCCAGCATGCTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS-3UTR CAA 90 bp GTTGCCAGTTTTGAACCCAGCTTTGACATCGTGCCCTTCCCCGATGTCCACTCATTAATGTTGCCAGTTTaGAACCCAGCTTTGACATCG +
Preference number: 5 (lower is better)
Translates to: VASFEPSFDIVPFPDVHSLMLPV*NPALTS
Trigger: CGATGTCAAAGCTGGGTTCAAAACTGGCAACATTAA...TGAGTGGACATCGGGGAAGGGCACGATGTCAAAGCTGGGTTCAAAACTGGCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR CAA 90 bp GTTGCCAGTTTTGAACCCAGCTTTGACATCGTGCCCTTCCCCGATGTCCACTCATGTGAACAGTTAATGTaGCCAGTTTTGAACCCAGCT +
Preference number: 5 (lower is better)
Translates to: VASFEPSFDIVPFPDVHSCEQLM*PVLNPA
Trigger: AGCTGGGTTCAAAACTGGCAACATTAACTGTTCACA...TGAGTGGACATCGGGGAAGGGCACGATGTCAAAGCTGGGTTCAAAACTGGCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR CAA 90 bp CTCACAGGGAATCTCCCCAGTGGGAATGTCCATATCTATGAAGTTTCACTTCTTAACAGAGACAGCACATaGCTTAGACTGCTAAGGCCT +
Preference number: 5 (lower is better)
Translates to: LTGNLPSGNVHIYEVSLLNRDST*LRLLRP
Trigger: AGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT...AAGAAGTGAAACTTCATAGATATGGACATTCCCACTGGGGAGATTCCCTGTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000600125.5
ENST00000601584.1
CDS-3UTR CAA 90 bp CAAGGGGCTAACAAACTAGAAATGATATATCTTCGTGTCAAGAACAGGAAAGGAGTTTTGAACCCAGCTTaGACATCGTGCCCTTCCCCG +
Preference number: 5 (lower is better)
Translates to: QGANKLEMIYLRVKNRKGVLNPA*TSCPSP
Trigger: CGGGGAAGGGCACGATGTCAAAGCTGGGTTCAAAAC...TCCTTTCCTGTTCTTGACACGAAGATATATCATTTCTAGTTTGTTAGCCCCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000596939.1
CDS-3UTR CAA 90 bp AACAGAGACAGCACATTGCTTAGACTGCTAAGGCCTGTGTCCGGTGTGAAATTCTCCTTCTGTGTCCTCTaGAACAAAGCTGATTATTTC +
Preference number: 5 (lower is better)
Translates to: NRDSTLLRLLRPVSGVKFSFCVL*NKADYF
Trigger: GAAATAATCAGCTTTGTTCAAGAGGACACAGAAGGA...GAATTTCACACCGGACACAGGCCTTAGCAGTCTAAGCAATGTGCTGTCTCTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR CAA 90 bp CATATAGTAAGTCAGGGGCATTGGCCTAAGACTTTCCCCCACATTTGCTACACTTGGGTGACTTGGATATaGGATATATCCATAACGAGC +
Preference number: 5 (lower is better)
Translates to: HIVSQGHWPKTFPHICYTWVTWI*DISITS
Trigger: GCTCGTTATGGATATATCCAATATCCAAGTCACCCA...AGTGTAGCAAATGTGGGGGAAAGTCTTAGGCCAATGCCCCTGACTTACTATATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR CAA 90 bp CATATAGTAAGTCAGGGGCATTGGCCTAAGACTTTCCCCCACATTTGCTACACTTCCTTCTGTGTCCTCTaGAACAAAGCTGATTATTTC +
Preference number: 5 (lower is better)
Translates to: HIVSQGHWPKTFPHICYTSFCVL*NKADYF
Trigger: GAAATAATCAGCTTTGTTCAAGAGGACACAGAAGGA...AGTGTAGCAAATGTGGGGGAAAGTCTTAGGCCAATGCCCCTGACTTACTATATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS-3UTR CAA 90 bp CAGTTCCAGAGCTGGGTGACTTGGATATTGGATATATCCATAACGAGCATCATATGGGTGACTTGGATATaGGATATATCCATAACGAGC +
Preference number: 5 (lower is better)
Translates to: QFQSWVTWILDISITSIIWVTWI*DISITS
Trigger: GCTCGTTATGGATATATCCAATATCCAAGTCACCCA...TATGATGCTCGTTATGGATATATCCAATATCCAAGTCACCCAGCTCTGGAACTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317398.10
ENST00000600125.5
CDS CCA 72 bp CCCCGCGCGGAGTCCGTTAGCTCCGCCATAGGACCGTaGGCGCGGACAGCTGCCGGGAGCGGCAGGCGTCTC +
Preference number: 6 (lower is better)
Translates to: PRAESVSSAIGP*ARTAAGSGRRL
Trigger: GAGACGCCTGCCGCTCCCGGCAGCTGTCCGCGCCCACGGTCCTATGGCGGAGCTAACGGACTCCGCGCGGGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317398.10
ENST00000594803.1
ENST00000599961.1
CDS CCA 72 bp TCCCGCGCGGAGTCCGTTAGCTCCGCCATAGGACCGTaGGCGCGGACAGCTGCCGGGAGCGGCAGGCGTCTC +
Preference number: 6 (lower is better)
Translates to: SRAESVSSAIGP*ARTAAGSGRRL
Trigger: GAGACGCCTGCCGCTCCCGGCAGCTGTCCGCGCCCACGGTCCTATGGCGGAGCTAACGGACTCCGCGCGGGA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000596939.1
ENST00000601584.1
CDS CCA 72 bp ACCCGCGCGGAGTCCGTTAGCTCCGCCATAGGACCGTaGGCGCGGACAGCTGCCGGGAGCGGCAGGCGTCTC +
Preference number: 6 (lower is better)
Translates to: TRAESVSSAIGP*ARTAAGSGRRL
Trigger: GAGACGCCTGCCGCTCCCGGCAGCTGTCCGCGCCCACGGTCCTATGGCGGAGCTAACGGACTCCGCGCGGGT
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS TCA 72 bp AGGCACTTTACGATTCGGAGTCGGAGAAAGGGTGACTaGGGGCCCGGAGGACGCAGCACCCACCCGCGCGGA +
Preference number: 6 (lower is better)
Translates to: RHFTIRSRRKGD*GPGGRSTHPRG
Trigger: TCCGCGCGGGTGGGTGCTGCGTCCTCCGGGCCCTCAGTCACCCTTTCTCCGACTCCGAATCGTAAAGTGCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS TCA 72 bp CTGCAGGCACTTTACGATTCGGAGTCGGAGAAAGGGTaGCTGAGGGCCCGGAGGACGCAGCACCCACCCGCG +
Preference number: 6 (lower is better)
Translates to: LQALYDSESEKG*LRARRTQHPPA
Trigger: CGCGGGTGGGTGCTGCGTCCTCCGGGCCCTCAGTCACCCTTTCTCCGACTCCGAATCGTAAAGTGCCTGCAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS CCA 72 bp CCGTCCCTGCAGAGCATCAGACGCGTCTCGGGACACTaGGGACAACATCTCCTCCGCGCTTTCCCAACACCT +
Preference number: 6 (lower is better)
Translates to: PSLQSIRRVSGH*GQHLLRAFPTP
Trigger: AGGTGTTGGGAAAGCGCGGAGGAGATGTTGTCCCCAGTGTCCCGAGACGCGTCTGATGCTCTGCAGGGACGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000317398.10
ENST00000594803.1
ENST00000596939.1
ENST00000599961.1
ENST00000600125.5
ENST00000601584.1
CDS CAA 90 bp CTCAGCCTGCCATTCCAGTCACAGTTCCTCAAACTCTGCTCTGTGTaGATGAGAACCCTGTCTCCCAAATGTTTGGGGGTCAGCAGCACC +
Preference number: 6 (lower is better)
Translates to: LSLPFQSQFLKLCSV*MRTLSPKCLGVSST
Trigger: GGTGCTGCTGACCCCCAAACATTTGGGAGACAGGGTTCTCATCAACACAGAGCAGAGTTTGAGGAACTGTGACTGGAATGGCAGGCTGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000600125.5
CDS CAA 72 bp CCATTCCAGTCACAGTTCCTCAAACTCTGCTCTGTGTaGATGAGAACCCTGTCTCCCAAATGTTTGGGGGTC +
Preference number: 6 (lower is better)
Translates to: PFQSQFLKLCSV*MRTLSPKCLGV
Trigger: GACCCCCAAACATTTGGGAGACAGGGTTCTCATCAACACAGAGCAGAGTTTGAGGAACTGTGACTGGAATGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000600125.5