RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZNF568 (Homo sapiens)

Ensembl gene IDs: ENSG00000198453

Ensembl transcript IDs: ENST00000333987.12, ENST00000415168.5, ENST00000427117.5, ENST00000433993.5, ENST00000444991.5, ENST00000455427.6, ENST00000455817.5, ENST00000586353.5, ENST00000587130.5, ENST00000587857.5, ENST00000588596.1, ENST00000591887.1, ENST00000592567.1, ENST00000616085.1, ENST00000617745.4, ENST00000619231.4

Found 207 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGATGGCTATACAGTAGGATAAGTTTGCAATGTGAATGGATCTCTTaGACACTCGTTGGAGGACAAGTAATAGAGTTGCAGAAAAATCCA +
Preference number: 1 (lower is better)
Translates to: GWLYSRISLQCEWIS*TLVGGQVIELQKNP
Trigger: TGGATTTTTCTGCAACTCTATTACTTGTCCTCCAACGAGTGTTCAAGAGATCCATTCACATTGCAAACTTATCCTACTGTATAGCCATCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000427117.5
ENST00000586353.5
3UTR-3UTR TCA 90 bp CCTTGGCCTCAACGTCATAGACAATATCATCTATTTTCTCCCAATGGTTTCACATTCCCAGGCTGGTCTTaGACTCCTGACCTCAAGTTA +
Preference number: 2 (lower is better)
Translates to: PWPQRHRQYHLFSPNGFTFPGWS*TPDLKL
Trigger: TAACTTGAGGTCAGGAGTTCAAGACCAGCCTGGGAA...TGTGAAACCATTGGGAGAAAATAGATGATATTGTCTATGACGTTGAGGCCAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
3UTR-3UTR TCA 90 bp CCTTGGCCTCAACGTCATAGACAATATCATCTATTTTCTCCCAATGGTTTCACAGAGGGCGATCACTTTTaGAGTCAGGAGTTCAAGACT +
Preference number: 2 (lower is better)
Translates to: PWPQRHRQYHLFSPNGFTEGDHF*SQEFKT
Trigger: AGTCTTGAACTCCTGACTTCAAAAGTGATCGCCCTC...TGTGAAACCATTGGGAGAAAATAGATGATATTGTCTATGACGTTGAGGCCAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
3UTR-3UTR TCA 90 bp ATCCATGTTACACAATATGGATCTGGTTCACTGCTTTTAAGTGCTGTATACTATGAGGGCGATCACTTTTaGAGTCAGGAGTTCAAGACT +
Preference number: 2 (lower is better)
Translates to: IHVTQYGSGSLLLSAVYYEGDHF*SQEFKT
Trigger: AGTCTTGAACTCCTGACTTCAAAAGTGATCGCCCTC...ATAGTATACAGCACTTAAAAGCAGTGAACCAGATCCATATTGTGTAACATGGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
3UTR-3UTR TCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTGAGGGCGATCACTTTTaGAGTCAGGAGTTCAAGACT +
Preference number: 2 (lower is better)
Translates to: QSPETMLSIIGCVSFYSIEGDHF*SQEFKT
Trigger: AGTCTTGAACTCCTGACTTCAAAAGTGATCGCCCTC...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
3UTR-3UTR CCA 90 bp CCTTGGCCTCAACGTCATAGACAATATCATCTATTTTCTCCCAATGGTTTCACATACACAATATGGATCTaGTTCACTGCTTTTAAGTGC +
Preference number: 2 (lower is better)
Translates to: PWPQRHRQYHLFSPNGFTYTIWI*FTAFKC
Trigger: GCACTTAAAAGCAGTGAACCAGATCCATATTGTGTA...TGTGAAACCATTGGGAGAAAATAGATGATATTGTCTATGACGTTGAGGCCAAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
3UTR-3UTR CCA 90 bp TGCACAGCACATATAACCGGCAAGGACGACAATCCACAATATTTAAGAAATGCAACTTTAGAAAACAACTaGGCAATGTTGAGTAAGGCT +
Preference number: 2 (lower is better)
Translates to: CTAHITGKDDNPQYLRNATLENN*AMLSKA
Trigger: AGCCTTACTCAACATTGCCCAGTTGTTTTCTAAAGT...TGCATTTCTTAAATATTGTGGATTGTCGTCCTTGCCGGTTATATGTGCTGTGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000586353.5
3UTR-3UTR CCA 90 bp CCTTGGCCTCAACGTCATAGACAATATCATCTATTTTCTCCCAATGGTTTCACATCTATTTTCTCCCAATaGTTTCACAGTTTGGCTTTT +
Preference number: 2 (lower is better)
Translates to: PWPQRHRQYHLFSPNGFTSIFSQ*FHSLAF
Trigger: AAAAGCCAAACTGTGAAACCATTGGGAGAAAATAGA...TGTGAAACCATTGGGAGAAAATAGATGATATTGTCTATGACGTTGAGGCCAAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
3UTR-3UTR TCA 90 bp AACACTTTAGAAAACAACTGGGCAATGTTGAGTAAGGCTGAAAATGCATATAACAATAACAGATACCTCTaGCAGCTAAAGAAGGGGATT +
Preference number: 2 (lower is better)
Translates to: NTLENNWAMLSKAENAYNNNRYL*QLKKGI
Trigger: AATCCCCTTCTTTAGCTGTCAGAGGTATCTGTTATT...GTTATATGCATTTTCAGCCTTACTCAACATTGCCCAGTTGTTTTCTAAAGTGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000427117.5
ENST00000586353.5
3UTR-3UTR CCA 90 bp ATCCATGTTACACAATATGGATCTGGTTCACTGCTTTTAAGTGCTGTATACTATATGTGCCACTGCATCTaGCTATACATACATACATAT +
Preference number: 2 (lower is better)
Translates to: IHVTQYGSGSLLLSAVYYMCHCI*LYIHTY
Trigger: ATATGTATGTATGTATAGCCAGATGCAGTGGCACAT...ATAGTATACAGCACTTAAAAGCAGTGAACCAGATCCATATTGTGTAACATGGAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
3UTR-3UTR CCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTATGTGCCACTGCATCTaGCTATACATACATACATAT +
Preference number: 2 (lower is better)
Translates to: QSPETMLSIIGCVSFYSIMCHCI*LYIHTY
Trigger: ATATGTATGTATGTATAGCCAGATGCAGTGGCACAT...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
3UTR-3UTR CCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTTCTATTTTCTCCCAATaGTTTCACAGTTTGGCTTTT +
Preference number: 2 (lower is better)
Translates to: QSPETMLSIIGCVSFYSISIFSQ*FHSLAF
Trigger: AAAAGCCAAACTGTGAAACCATTGGGAGAAAATAGA...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
3UTR-3UTR CAA 90 bp ATGTCAGGTCTAACATACACTGAGTTCACATATATTCATGAATCTGCTTCTGGAAGAGGGCGATCACTTTaGAAGTCAGGAGTTCAAGAC +
Preference number: 3 (lower is better)
Translates to: MSGLTYTEFTYIHESASGRGRSL*KSGVQD
Trigger: GTCTTGAACTCCTGACTTCAAAAGTGATCGCCCTCT...TCCAGAAGCAGATTCATGAATATATGTGAACTCAGTGTATGTTAGACCTGACAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
3UTR-3UTR CAA 90 bp TGCACAGCACATATAACCGGCAAGGACGACAATCCACAATATTTAAGAAATGCAAACAACTGGGCAATGTaGAGTAAGGCTGAAAATGCA +
Preference number: 3 (lower is better)
Translates to: CTAHITGKDDNPQYLRNANNWAM*SKAENA
Trigger: TGCATTTTCAGCCTTACTCAACATTGCCCAGTTGTT...TGCATTTCTTAAATATTGTGGATTGTCGTCCTTGCCGGTTATATGTGCTGTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000586353.5
3UTR-3UTR CAA 90 bp AACACTTTAGAAAACAACTGGGCAATGTTGAGTAAGGCTGAAAATGCATATAACAGAAGGGGATTTAGATaGGGAAGATCAAAGCACACA +
Preference number: 3 (lower is better)
Translates to: NTLENNWAMLSKAENAYNRRGFR*GRSKHT
Trigger: TGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCT...GTTATATGCATTTTCAGCCTTACTCAACATTGCCCAGTTGTTTTCTAAAGTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000427117.5
ENST00000586353.5
3UTR-3UTR CAA 90 bp AGTGAGGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTAAGATCCTGGCTTTTTaGAGCTTATGCCAAGATATT +
Preference number: 3 (lower is better)
Translates to: SEGVSSILFKIVAAIHTLKILAF*SLCQDI
Trigger: AATATCTTGGCATAAGCTCAAAAAAGCCAGGATCTT...AAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCCTCACT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
3UTR-3UTR CAA 90 bp ATGTCAGGTCTAACATACACTGAGTTCACATATATTCATGAATCTGCTTCTGGAAAGATCCTGGCTTTTTaGAGCTTATGCCAAGATATT +
Preference number: 3 (lower is better)
Translates to: MSGLTYTEFTYIHESASGKILAF*SLCQDI
Trigger: AATATCTTGGCATAAGCTCAAAAAAGCCAGGATCTT...TCCAGAAGCAGATTCATGAATATATGTGAACTCAGTGTATGTTAGACCTGACAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
3UTR-3UTR CAA 90 bp ATGTCAGGTCTAACATACACTGAGTTCACATATATTCATGAATCTGCTTCTGGACAATGGTTTCACAGTTaGGCTTTTCAAATTCCAGTA +
Preference number: 3 (lower is better)
Translates to: MSGLTYTEFTYIHESASGQWFHS*AFQIPV
Trigger: TACTGGAATTTGAAAAGCCAAACTGTGAAACCATTG...TCCAGAAGCAGATTCATGAATATATGTGAACTCAGTGTATGTTAGACCTGACAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
3UTR-3UTR CAA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTAAGATCCTGGCTTTTTaGAGCTTATGCCAAGATATT +
Preference number: 3 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSIKILAF*SLCQDI
Trigger: AATATCTTGGCATAAGCTCAAAAAAGCCAGGATCTT...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
3UTR-3UTR CAA 90 bp ATCCATGTTACACAATATGGATCTGGTTCACTGCTTTTAAGTGCTGTATACTATAAGATCCTGGCTTTTTaGAGCTTATGCCAAGATATT +
Preference number: 3 (lower is better)
Translates to: IHVTQYGSGSLLLSAVYYKILAF*SLCQDI
Trigger: AATATCTTGGCATAAGCTCAAAAAAGCCAGGATCTT...ATAGTATACAGCACTTAAAAGCAGTGAACCAGATCCATATTGTGTAACATGGAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
3UTR-3UTR CAA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTCAATGGTTTCACAGTTaGGCTTTTCAAATTCCAGTA +
Preference number: 3 (lower is better)
Translates to: QSPETMLSIIGCVSFYSIQWFHS*AFQIPV
Trigger: TACTGGAATTTGAAAAGCCAAACTGTGAAACCATTG...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
3UTR-3UTR CAA 90 bp ATCCATGTTACACAATATGGATCTGGTTCACTGCTTTTAAGTGCTGTATACTATCAATGGTTTCACAGTTaGGCTTTTCAAATTCCAGTA +
Preference number: 3 (lower is better)
Translates to: IHVTQYGSGSLLLSAVYYQWFHS*AFQIPV
Trigger: TACTGGAATTTGAAAAGCCAAACTGTGAAACCATTG...ATAGTATACAGCACTTAAAAGCAGTGAACCAGATCCATATTGTGTAACATGGAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
3UTR-3UTR CAA 90 bp AACACTTTAGAAAACAACTGGGCAATGTTGAGTAAGGCTGAAAATGCATATAACTACAGTAGGATAAGTTaGCAATGTGAATGGATCTCT +
Preference number: 3 (lower is better)
Translates to: NTLENNWAMLSKAENAYNYSRIS*QCEWIS
Trigger: AGAGATCCATTCACATTGCAAACTTATCCTACTGTA...GTTATATGCATTTTCAGCCTTACTCAACATTGCCCAGTTGTTTTCTAAAGTGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427117.5
ENST00000586353.5
CDS-3UTR GCA 90 bp TGCACAGCACATATAACCGGCAAGGACGACAATCCACAATATTTAAGAAATGCACACCCACTCCCTGCCTaGGCGCGGCCCGACACTGCC +
Preference number: 4 (lower is better)
Translates to: CTAHITGKDDNPQYLRNAHPLPA*ARPDTA
Trigger: GGCAGTGTCGGGCCGCGCGCAGGCAGGGAGTGGGTG...TGCATTTCTTAAATATTGTGGATTGTCGTCCTTGCCGGTTATATGTGCTGTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000586353.5
CDS-3UTR GCA 90 bp GCTAAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACACCACACCCACTCCCTaGCTGCGCGCGGCCCGACAC +
Preference number: 4 (lower is better)
Translates to: AKEGDLDWEDQSTHGISNTTPTP*LRAARH
Trigger: GTGTCGGGCCGCGCGCAGGCAGGGAGTGGGTGTGGT...GTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000586353.5
CDS-3UTR GCA 90 bp AAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACATTCCCTTGCTCGCCCCCTaGTGCGGGGACTCGGCAGCG +
Preference number: 4 (lower is better)
Translates to: KEGDLDWEDQSTHGISNIPLLAP*CGDSAA
Trigger: CGCTGCCGAGTCCCCGCAGCAGGGGGCGAGCAAGGG...AATGTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR GCA 90 bp GGGAAGATCAAAGCACACATGGGATTTCTAACATTAGCATTCTACCTCTTAACACAACCGCGAGTCCCTTaGTCGCCCCCTGCTGCGGGG +
Preference number: 4 (lower is better)
Translates to: GKIKAHMGFLTLAFYLLTQPRVP*SPPAAG
Trigger: CCCCGCAGCAGGGGGCGAGCAAGGGACTCGCGGTTG...TGTTAAGAGGTAGAATGCTAATGTTAGAAATCCCATGTGTGCTTTGATCTTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR GCA 90 bp GGGAAGATCAAAGCACACATGGGATTTCTAACATTAGCATTCTACCTCTTAACACCCGACACTGCCCTCTaGCGAGCTGGGGGCCAGTGG +
Preference number: 4 (lower is better)
Translates to: GKIKAHMGFLTLAFYLLTPDTAL*RAGGQW
Trigger: CCACTGGCCCCCAGCTCGGCAGAGGGCAGTGTCGGG...TGTTAAGAGGTAGAATGCTAATGTTAGAAATCCCATGTGTGCTTTGATCTTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000586353.5
CDS-3UTR TCA 90 bp AAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACATTGGGGGCCAGTGGCCCTaGCACCCTTCTCCCATCCCG +
Preference number: 4 (lower is better)
Translates to: KEGDLDWEDQSTHGISNIGGQWP*HPSPIP
Trigger: CGGGATGGGAGAAGGGTGTCAGGGCCACTGGCCCCC...AATGTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000586353.5
CDS-3UTR GCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTCCCTTGCTCGCCCCCTaGTGCGGGGACTCGGCAGCG +
Preference number: 4 (lower is better)
Translates to: QSPETMLSIIGCVSFYSIPLLAP*CGDSAA
Trigger: CGCTGCCGAGTCCCCGCAGCAGGGGGCGAGCAAGGG...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS-3UTR GCA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTCCCTTGCTCGCCCCCTaGTGCGGGGACTCGGCAGCG +
Preference number: 4 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSIPLLAP*CGDSAA
Trigger: CGCTGCCGAGTCCCCGCAGCAGGGGGCGAGCAAGGG...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS-3UTR GCA 90 bp AGTGAGGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCAACCGCGAGTCCCTTaGTCGCCCCCTGCTGCGGGG +
Preference number: 4 (lower is better)
Translates to: SEGVSSILFKIVAAIHTLQPRVP*SPPAAG
Trigger: CCCCGCAGCAGGGGGCGAGCAAGGGACTCGCGGTTG...AAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCCTCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS-3UTR GCA 90 bp ATGTCAGGTCTAACATACACTGAGTTCACATATATTCATGAATCTGCTTCTGGATTGCTCGCCCCCTGCTaGGGGGACTCGGCAGCGTCA +
Preference number: 4 (lower is better)
Translates to: MSGLTYTEFTYIHESASGLLAPC*GDSAAS
Trigger: TGACGCTGCCGAGTCCCCGCAGCAGGGGGCGAGCAA...TCCAGAAGCAGATTCATGAATATATGTGAACTCAGTGTATGTTAGACCTGACAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS-3UTR GCA 90 bp AAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACATTTTGCTCGCCCCCTGCTaGGGGGACTCGGCAGCGTCA +
Preference number: 4 (lower is better)
Translates to: KEGDLDWEDQSTHGISNILLAPC*GDSAAS
Trigger: TGACGCTGCCGAGTCCCCGCAGCAGGGGGCGAGCAA...AATGTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR GCA 90 bp ACAGCTAAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTTCGGGAGGCAGAGGTTaGGGTGAGCTGAGATCGCGC +
Preference number: 4 (lower is better)
Translates to: TAKEGDLDWEDQSTHGISSGGRG*GELRSR
Trigger: GCGCGATCTCAGCTCACCGCAACCTCTGCCTCCCGA...AGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTTAGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427117.5
ENST00000586353.5
CDS-3UTR CCA 90 bp AAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACATTTGCCCTCTGCCGAGCTaGGGGCCAGTGGCCCTGACA +
Preference number: 4 (lower is better)
Translates to: KEGDLDWEDQSTHGISNICPLPS*GPVALT
Trigger: TGTCAGGGCCACTGGCCCCCAGCTCGGCAGAGGGCA...AATGTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000586353.5
CDS-3UTR CCA 90 bp GCTAAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACCCAAGCACCTGTCGCTaGGCCCACAATCCAGGTCCG +
Preference number: 4 (lower is better)
Translates to: AKEGDLDWEDQSTHGISNPSTCR*AHNPGP
Trigger: CGGACCTGGATTGTGGGCCCAGCGACAGGTGCTTGG...GTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000586353.5
CDS-3UTR TCA 90 bp CCTTGGCCTCAACGTCATAGACAATATCATCTATTTTCTCCCAATGGTTTCACACCGCAGATAGGTCTGTaGCAGACGCCTAAAGCGCCG +
Preference number: 4 (lower is better)
Translates to: PWPQRHRQYHLFSPNGFTPQIGL*QTPKAP
Trigger: CGGCGCTTTAGGCGTCTGTCACAGACCTATCTGCGG...TGTGAAACCATTGGGAGAAAATAGATGATATTGTCTATGACGTTGAGGCCAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS-3UTR TCA 90 bp GCTAAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACCCGCAGATAGGTCTGTaGCAGACGCCTAAAGCGCCG +
Preference number: 4 (lower is better)
Translates to: AKEGDLDWEDQSTHGISNPQIGL*QTPKAP
Trigger: CGGCGCTTTAGGCGTCTGTCACAGACCTATCTGCGG...GTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR TCA 90 bp AAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACATTCCCATCGCACAGCCCTaGCCTCCCCTAGCGGTGAAG +
Preference number: 4 (lower is better)
Translates to: KEGDLDWEDQSTHGISNIPIAQP*PPLAVK
Trigger: CTTCACCGCTAGGGGAGGTCAGGGCTGTGCGATGGG...AATGTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000586353.5
CDS-3UTR GCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTTTGCTCGCCCCCTGCTaGGGGGACTCGGCAGCGTCA +
Preference number: 4 (lower is better)
Translates to: QSPETMLSIIGCVSFYSILLAPC*GDSAAS
Trigger: TGACGCTGCCGAGTCCCCGCAGCAGGGGGCGAGCAA...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS-3UTR GCA 90 bp TGGGAAGATCAAAGCACACATGGGATTTCTAACATTAGCATTCTACCTCTTAACTCGGGAGGCAGAGGTTaGGGTGAGCTGAGATCGCGC +
Preference number: 4 (lower is better)
Translates to: WEDQSTHGISNISILPLNSGGRG*GELRSR
Trigger: GCGCGATCTCAGCTCACCGCAACCTCTGCCTCCCGA...GTTAAGAGGTAGAATGCTAATGTTAGAAATCCCATGTGTGCTTTGATCTTCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000427117.5
ENST00000586353.5
CDS-3UTR GCA 90 bp AGCATTCTACCTCTTAACATGGGTGTTCAGTCCCCCTTAATATATTACACATGTGGTGAAGCGTGGGCATaGAGCCCGCACATCTCCGAG +
Preference number: 4 (lower is better)
Translates to: SILPLNMGVQSPLIYYTCGEAWA*SPHISE
Trigger: CTCGGAGATGTGCGGGCTGCATGCCCACGCTTCACC...ACATGTGTAATATATTAAGGGGGACTGAACACCCATGTTAAGAGGTAGAATGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000586353.5
CDS-3UTR GCA 90 bp GGGAAGATCAAAGCACACATGGGATTTCTAACATTAGCATTCTACCTCTTAACAGCGCAGTTTCTGAGATaGTGGGTGAAGGCGACCCGC +
Preference number: 4 (lower is better)
Translates to: GKIKAHMGFLTLAFYLLTAQFLR*WVKATR
Trigger: GCGGGTCGCCTTCACCCAGCATCTCAGAAACTGCGC...TGTTAAGAGGTAGAATGCTAATGTTAGAAATCCCATGTGTGCTTTGATCTTCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR GCA 90 bp TGGGAAGATCAAAGCACACATGGGATTTCTAACATTAGCATTCTACCTCTTAACCTGAGCACTCCCCACTaGCGCTACTCGGGACACTCT +
Preference number: 4 (lower is better)
Translates to: WEDQSTHGISNISILPLNLSTPH*RYSGHS
Trigger: AGAGTGTCCCGAGTAGCGGCAGTGGGGAGTGCTCAG...GTTAAGAGGTAGAATGCTAATGTTAGAAATCCCATGTGTGCTTTGATCTTCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR GCA 90 bp AGCATTCTACCTCTTAACATGGGTGTTCAGTCCCCCTTAATATATTACACATGTTTCTCCCATCCCGACTaGACCGCCCCGACACTCTCT +
Preference number: 4 (lower is better)
Translates to: SILPLNMGVQSPLIYYTCFSHPD*TAPTLS
Trigger: AGAGAGTGTCGGGGCGGTGCAGTCGGGATGGGAGAA...ACATGTGTAATATATTAAGGGGGACTGAACACCCATGTTAAGAGGTAGAATGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000586353.5
CDS-3UTR CCA 90 bp AAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACATTCCTAGCGGTGAAGCGTaGGCATGCAGCCCGCACATC +
Preference number: 4 (lower is better)
Translates to: KEGDLDWEDQSTHGISNIPSGEA*ACSPHI
Trigger: GATGTGCGGGCTGCATGCCCACGCTTCACCGCTAGG...AATGTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000586353.5
CDS-3UTR GCA 90 bp GGGAAGATCAAAGCACACATGGGATTTCTAACATTAGCATTCTACCTCTTAACACTCGGCAGCGTCACCTaGCGGAAACACCCGAATGTT +
Preference number: 4 (lower is better)
Translates to: GKIKAHMGFLTLAFYLLTLGSVT*RKHPNV
Trigger: AACATTCGGGTGTTTCCGGCAGGTGACGCTGCCGAG...TGTTAAGAGGTAGAATGCTAATGTTAGAAATCCCATGTGTGCTTTGATCTTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR GCA 90 bp ATGTCAGGTCTAACATACACTGAGTTCACATATATTCATGAATCTGCTTCTGGACTGAGCACTCCCCACTaGCGCTACTCGGGACACTCT +
Preference number: 4 (lower is better)
Translates to: MSGLTYTEFTYIHESASGLSTPH*RYSGHS
Trigger: AGAGTGTCCCGAGTAGCGGCAGTGGGGAGTGCTCAG...TCCAGAAGCAGATTCATGAATATATGTGAACTCAGTGTATGTTAGACCTGACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS-3UTR GCA 90 bp ACAGCTAAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTCCACACAGAATACCGTaGAGACAGGACTCCCACCAC +
Preference number: 4 (lower is better)
Translates to: TAKEGDLDWEDQSTHGISPHRIP*RQDSHH
Trigger: GTGGTGGGAGTCCTGTCTGCACGGTATTCTGTGTGG...AGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTTAGCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000586353.5
CDS-3UTR CCA 90 bp GCTAAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACCAGTTTCTGAGATGCTaGGTGAAGGCGACCCGCAGA +
Preference number: 4 (lower is better)
Translates to: AKEGDLDWEDQSTHGISNQFLRC*VKATRR
Trigger: TCTGCGGGTCGCCTTCACCCAGCATCTCAGAAACTG...GTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR CCA 90 bp ACAGCTAAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAGACCCTGCCTGCTCTaGGCAGAAGGGTCAAGACAA +
Preference number: 4 (lower is better)
Translates to: TAKEGDLDWEDQSTHGISRPCLL*AEGSRQ
Trigger: TTGTCTTGACCCTTCTGCCCAGAGCAGGCAGGGTCT...AGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTTAGCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR TCA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTCCGCAGATAGGTCTGTaGCAGACGCCTAAAGCGCCG +
Preference number: 4 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSIPQIGL*QTPKAP
Trigger: CGGCGCTTTAGGCGTCTGTCACAGACCTATCTGCGG...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS-3UTR TCA 90 bp ATGTCAGGTCTAACATACACTGAGTTCACATATATTCATGAATCTGCTTCTGGAATCATTAGCGTACCCTaGGCACTCCCCACTGCCGCT +
Preference number: 4 (lower is better)
Translates to: MSGLTYTEFTYIHESASGIISVP*ALPTAA
Trigger: AGCGGCAGTGGGGAGTGCTCAGGGTACGCTAATGAT...TCCAGAAGCAGATTCATGAATATATGTGAACTCAGTGTATGTTAGACCTGACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS-3UTR TCA 90 bp AAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACATTCCTAGCACTCAGGTCTaGACGAGTCCATCCCAACCC +
Preference number: 4 (lower is better)
Translates to: KEGDLDWEDQSTHGISNIPSTQV*TSPSQP
Trigger: GGGTTGGGATGGACTCGTTCAGACCTGAGTGCTAGG...AATGTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000586353.5
CDS-3UTR GCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTGCGCAGTTTCTGAGATaGTGGGTGAAGGCGACCCGC +
Preference number: 4 (lower is better)
Translates to: QSPETMLSIIGCVSFYSIAQFLR*WVKATR
Trigger: GCGGGTCGCCTTCACCCAGCATCTCAGAAACTGCGC...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS-3UTR GCA 90 bp AGTGAGGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTCGGCAGCGTCACCTaGCGGAAACACCCGAATGTT +
Preference number: 4 (lower is better)
Translates to: SEGVSSILFKIVAAIHTLLGSVT*RKHPNV
Trigger: AACATTCGGGTGTTTCCGGCAGGTGACGCTGCCGAG...AAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCCTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS-3UTR GCA 90 bp ATCCATGTTACACAATATGGATCTGGTTCACTGCTTTTAAGTGCTGTATACTATCTGAGCACTCCCCACTaGCGCTACTCGGGACACTCT +
Preference number: 4 (lower is better)
Translates to: IHVTQYGSGSLLLSAVYYLSTPH*RYSGHS
Trigger: AGAGTGTCCCGAGTAGCGGCAGTGGGGAGTGCTCAG...ATAGTATACAGCACTTAAAAGCAGTGAACCAGATCCATATTGTGTAACATGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS-3UTR GCA 90 bp GGGAAGATCAAAGCACACATGGGATTTCTAACATTAGCATTCTACCTCTTAACAATGTCATTCAGACCCTaGCTGCTCTGGGCAGAAGGG +
Preference number: 4 (lower is better)
Translates to: GKIKAHMGFLTLAFYLLTMSFRP*LLWAEG
Trigger: CCCTTCTGCCCAGAGCAGGCAGGGTCTGAATGACAT...TGTTAAGAGGTAGAATGCTAATGTTAGAAATCCCATGTGTGCTTTGATCTTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR CCA 90 bp ACAGCTAAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAGTTCTCTCCTCTTCTaGGTTCTGGACAGTGCCTCC +
Preference number: 4 (lower is better)
Translates to: TAKEGDLDWEDQSTHGISSSLLF*VLDSAS
Trigger: GGAGGCACTGTCCAGAACCCAGAAGAGGAGAGAACT...AGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTTAGCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR TCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTATCATTAGCGTACCCTaGGCACTCCCCACTGCCGCT +
Preference number: 4 (lower is better)
Translates to: QSPETMLSIIGCVSFYSIIISVP*ALPTAA
Trigger: AGCGGCAGTGGGGAGTGCTCAGGGTACGCTAATGAT...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS-3UTR TCA 90 bp GCTAAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACCTTGACAGCCCACTGTaGCTAGGTTGCTGTAGTTCT +
Preference number: 4 (lower is better)
Translates to: AKEGDLDWEDQSTHGISNLDSPL*LGCCSS
Trigger: AGAACTACAGCAACCTAGTCACAGTGGGCTGTCAAG...GTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR GCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTCTCGGCAGCGTCACCTaGCGGAAACACCCGAATGTT +
Preference number: 4 (lower is better)
Translates to: QSPETMLSIIGCVSFYSILGSVT*RKHPNV
Trigger: AACATTCGGGTGTTTCCGGCAGGTGACGCTGCCGAG...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS-3UTR GCA 90 bp AGTGAGGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCATTCAGACCCTGCCTaGTCTGGGCAGAAGGGTCAA +
Preference number: 4 (lower is better)
Translates to: SEGVSSILFKIVAAIHTLHSDPA*SGQKGQ
Trigger: TTGACCCTTCTGCCCAGAGCAGGCAGGGTCTGAATG...AAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCCTCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR GCA 90 bp ATGTCAGGTCTAACATACACTGAGTTCACATATATTCATGAATCTGCTTCTGGAATGTCATTCAGACCCTaGCTGCTCTGGGCAGAAGGG +
Preference number: 4 (lower is better)
Translates to: MSGLTYTEFTYIHESASGMSFRP*LLWAEG
Trigger: CCCTTCTGCCCAGAGCAGGCAGGGTCTGAATGACAT...TCCAGAAGCAGATTCATGAATATATGTGAACTCAGTGTATGTTAGACCTGACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR GCA 90 bp GCTAAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACCTGGGTTCTGGACAGTaGCTCCCAAACATTTCTTCC +
Preference number: 4 (lower is better)
Translates to: AKEGDLDWEDQSTHGISNLGSGQ*LPNISS
Trigger: GGAAGAAATGTTTGGGAGGCACTGTCCAGAACCCAG...GTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR CCA 90 bp AGTGAGGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCAGTTTCTGAGATGCTaGGTGAAGGCGACCCGCAGA +
Preference number: 4 (lower is better)
Translates to: SEGVSSILFKIVAAIHTLQFLRC*VKATRR
Trigger: TCTGCGGGTCGCCTTCACCCAGCATCTCAGAAACTG...AAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCCTCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS-3UTR CCA 90 bp ATGTCAGGTCTAACATACACTGAGTTCACATATATTCATGAATCTGCTTCTGGACAGTTTCTGAGATGCTaGGTGAAGGCGACCCGCAGA +
Preference number: 4 (lower is better)
Translates to: MSGLTYTEFTYIHESASGQFLRC*VKATRR
Trigger: TCTGCGGGTCGCCTTCACCCAGCATCTCAGAAACTG...TCCAGAAGCAGATTCATGAATATATGTGAACTCAGTGTATGTTAGACCTGACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS-3UTR CCA 90 bp AGTGAGGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTACTCGGGACACTCTaGGCCTTAGAGGATCCGTGT +
Preference number: 4 (lower is better)
Translates to: SEGVSSILFKIVAAIHTLLLGTL*ALEDPC
Trigger: ACACGGATCCTCTAAGGCCCAGAGTGTCCCGAGTAG...AAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCCTCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS-3UTR CCA 90 bp ATGTCAGGTCTAACATACACTGAGTTCACATATATTCATGAATCTGCTTCTGGACTACTCGGGACACTCTaGGCCTTAGAGGATCCGTGT +
Preference number: 4 (lower is better)
Translates to: MSGLTYTEFTYIHESASGLLGTL*ALEDPC
Trigger: ACACGGATCCTCTAAGGCCCAGAGTGTCCCGAGTAG...TCCAGAAGCAGATTCATGAATATATGTGAACTCAGTGTATGTTAGACCTGACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS-3UTR TCA 90 bp ACAGCTAAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTGAAAGGGCAGACTCTTaGGAACACCAAGCTTTCCTT +
Preference number: 4 (lower is better)
Translates to: TAKEGDLDWEDQSTHGISERADS*EHQAFL
Trigger: AAGGAAAGCTTGGTGTTCTCAAGAGTCTGCCCTTTC...AGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTTAGCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR TCA 90 bp CCTTGGCCTCAACGTCATAGACAATATCATCTATTTTCTCCCAATGGTTTCACAGAAAGGGCAGACTCTTaGGAACACCAAGCTTTCCTT +
Preference number: 4 (lower is better)
Translates to: PWPQRHRQYHLFSPNGFTERADS*EHQAFL
Trigger: AAGGAAAGCTTGGTGTTCTCAAGAGTCTGCCCTTTC...TGTGAAACCATTGGGAGAAAATAGATGATATTGTCTATGACGTTGAGGCCAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR GCA 90 bp AACACTTTAGAAAACAACTGGGCAATGTTGAGTAAGGCTGAAAATGCATATAACCATTCAGACCCTGCCTaGTCTGGGCAGAAGGGTCAA +
Preference number: 4 (lower is better)
Translates to: NTLENNWAMLSKAENAYNHSDPA*SGQKGQ
Trigger: TTGACCCTTCTGCCCAGAGCAGGCAGGGTCTGAATG...GTTATATGCATTTTCAGCCTTACTCAACATTGCCCAGTTGTTTTCTAAAGTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR GCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTCATTCAGACCCTGCCTaGTCTGGGCAGAAGGGTCAA +
Preference number: 4 (lower is better)
Translates to: QSPETMLSIIGCVSFYSIHSDPA*SGQKGQ
Trigger: TTGACCCTTCTGCCCAGAGCAGGCAGGGTCTGAATG...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR GCA 90 bp ATCCATGTTACACAATATGGATCTGGTTCACTGCTTTTAAGTGCTGTATACTATATGTCATTCAGACCCTaGCTGCTCTGGGCAGAAGGG +
Preference number: 4 (lower is better)
Translates to: IHVTQYGSGSLLLSAVYYMSFRP*LLWAEG
Trigger: CCCTTCTGCCCAGAGCAGGCAGGGTCTGAATGACAT...ATAGTATACAGCACTTAAAAGCAGTGAACCAGATCCATATTGTGTAACATGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR GCA 90 bp GCTAAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACTCCTCTTCTGGGTTATaGACAGCCACACAGAATACC +
Preference number: 4 (lower is better)
Translates to: AKEGDLDWEDQSTHGISNSSSGL*TATQNT
Trigger: GGTATTCTGTGTGGCTGTGCATAACCCAGAAGAGGA...GTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000586353.5
CDS-3UTR CCA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTAGACCCTGCCTGCTCTaGGCAGAAGGGTCAAGACAA +
Preference number: 4 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSIRPCLL*AEGSRQ
Trigger: TTGTCTTGACCCTTCTGCCCAGAGCAGGCAGGGTCT...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR CCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTAGACCCTGCCTGCTCTaGGCAGAAGGGTCAAGACAA +
Preference number: 4 (lower is better)
Translates to: QSPETMLSIIGCVSFYSIRPCLL*AEGSRQ
Trigger: TTGTCTTGACCCTTCTGCCCAGAGCAGGCAGGGTCT...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR CCA 90 bp AGCATTCTACCTCTTAACATGGGTGTTCAGTCCCCCTTAATATATTACACATGTTCCTCTTCTGGGTTCTaGACAGTGCCTCCCAAACAT +
Preference number: 4 (lower is better)
Translates to: SILPLNMGVQSPLIYYTCSSSGF*TVPPKH
Trigger: ATGTTTGGGAGGCACTGTCCAGAACCCAGAAGAGGA...ACATGTGTAATATATTAAGGGGGACTGAACACCCATGTTAAGAGGTAGAATGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR GCA 90 bp CCTTGGCCTCAACGTCATAGACAATATCATCTATTTTCTCCCAATGGTTTCACACAAACTTCTGGACAGTaGCTCCCAAACATTTCTTCC +
Preference number: 4 (lower is better)
Translates to: PWPQRHRQYHLFSPNGFTQTSGQ*LPNISS
Trigger: GGAAGAAATGTTTGGGAGGCACTGTCCAGAAGTTTG...TGTGAAACCATTGGGAGAAAATAGATGATATTGTCTATGACGTTGAGGCCAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CCA 90 bp GCTAAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACTTCCTTTCCATCATGTaGCTCAAACGCTCCATTGTC +
Preference number: 4 (lower is better)
Translates to: AKEGDLDWEDQSTHGISNFLSIM*LKRSIV
Trigger: GACAATGGAGCGTTTGAGCCACATGATGGAAAGGAA...GTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTTAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR CCA 90 bp CCTTGGCCTCAACGTCATAGACAATATCATCTATTTTCTCCCAATGGTTTCACAAACTTCCCAAACTTCTaGACAGTGCCTCCCAAACAT +
Preference number: 4 (lower is better)
Translates to: PWPQRHRQYHLFSPNGFTNFPNF*TVPPKH
Trigger: ATGTTTGGGAGGCACTGTCCAGAAGTTTGGGAAGTT...TGTGAAACCATTGGGAGAAAATAGATGATATTGTCTATGACGTTGAGGCCAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR TCA 90 bp AGCATTCTACCTCTTAACATGGGTGTTCAGTCCCCCTTAATATATTACACATGTCTGATCACTGAAGATTaGGATGTCATTCAGACCCTG +
Preference number: 4 (lower is better)
Translates to: SILPLNMGVQSPLIYYTCLITED*DVIQTL
Trigger: CAGGGTCTGAATGACATCTCAATCTTCAGTGATCAG...ACATGTGTAATATATTAAGGGGGACTGAACACCCATGTTAAGAGGTAGAATGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR TCA 90 bp ATCCATGTTACACAATATGGATCTGGTTCACTGCTTTTAAGTGCTGTATACTATCTTGACAGCCCACTGTaGCTAGGTTGCTGTAGTTCT +
Preference number: 4 (lower is better)
Translates to: IHVTQYGSGSLLLSAVYYLDSPL*LGCCSS
Trigger: AGAACTACAGCAACCTAGTCACAGTGGGCTGTCAAG...ATAGTATACAGCACTTAAAAGCAGTGAACCAGATCCATATTGTGTAACATGGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR TCA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTCTTGACAGCCCACTGTaGCTAGGTTGCTGTAGTTCT +
Preference number: 4 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSILDSPL*LGCCSS
Trigger: AGAACTACAGCAACCTAGTCACAGTGGGCTGTCAAG...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR TCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTCTTGACAGCCCACTGTaGCTAGGTTGCTGTAGTTCT +
Preference number: 4 (lower is better)
Translates to: QSPETMLSIIGCVSFYSILDSPL*LGCCSS
Trigger: AGAACTACAGCAACCTAGTCACAGTGGGCTGTCAAG...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR TCA 90 bp CCTTGGCCTCAACGTCATAGACAATATCATCTATTTTCTCCCAATGGTTTCACATCTTGGAGATGGATGTaGCTTTCCTCACAAGTGTTT +
Preference number: 4 (lower is better)
Translates to: PWPQRHRQYHLFSPNGFTSWRWM*LSSQVF
Trigger: AAACACTTGTGAGGAAAGTCACATCCATCTCCAAGA...TGTGAAACCATTGGGAGAAAATAGATGATATTGTCTATGACGTTGAGGCCAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR TCA 90 bp CCTTGGCCTCAACGTCATAGACAATATCATCTATTTTCTCCCAATGGTTTCACACAAACCCTTATCAAGTaGGTCACAGTCATAGAAGCT +
Preference number: 4 (lower is better)
Translates to: PWPQRHRQYHLFSPNGFTQTLIK*VTVIEA
Trigger: AGCTTCTATGACTGTGACTCACTTGATAAGGGTTTG...TGTGAAACCATTGGGAGAAAATAGATGATATTGTCTATGACGTTGAGGCCAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR TCA 90 bp ATGTCAGGTCTAACATACACTGAGTTCACATATATTCATGAATCTGCTTCTGGAGAGGGCGATCACTTTTaGAGTCAGGAGTTCAAGACT +
Preference number: 4 (lower is better)
Translates to: MSGLTYTEFTYIHESASGEGDHF*SQEFKT
Trigger: AGTCTTGAACTCCTGACTTCAAAAGTGATCGCCCTC...TCCAGAAGCAGATTCATGAATATATGTGAACTCAGTGTATGTTAGACCTGACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR TCA 90 bp ATCCATGTTACACAATATGGATCTGGTTCACTGCTTTTAAGTGCTGTATACTATTTCCCAGGCTGGTCTTaGACTCCTGACCTCAAGTTA +
Preference number: 4 (lower is better)
Translates to: IHVTQYGSGSLLLSAVYYFPGWS*TPDLKL
Trigger: TAACTTGAGGTCAGGAGTTCAAGACCAGCCTGGGAA...ATAGTATACAGCACTTAAAAGCAGTGAACCAGATCCATATTGTGTAACATGGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR TCA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTTTCCCAGGCTGGTCTTaGACTCCTGACCTCAAGTTA +
Preference number: 4 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSIFPGWS*TPDLKL
Trigger: TAACTTGAGGTCAGGAGTTCAAGACCAGCCTGGGAA...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR TCA 90 bp TGCACAGCACATATAACCGGCAAGGACGACAATCCACAATATTTAAGAAATGCAACAACTGGGCAATGTTaGGTAAGGCTGAAAATGCAT +
Preference number: 4 (lower is better)
Translates to: CTAHITGKDDNPQYLRNATTGQC*VRLKMH
Trigger: ATGCATTTTCAGCCTTACTCAACATTGCCCAGTTGT...TGCATTTCTTAAATATTGTGGATTGTCGTCCTTGCCGGTTATATGTGCTGTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000586353.5
CDS-3UTR TCA 90 bp AGTGAGGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTGATCACTGAAGATTaGGATGTCATTCAGACCCTG +
Preference number: 4 (lower is better)
Translates to: SEGVSSILFKIVAAIHTLLITED*DVIQTL
Trigger: CAGGGTCTGAATGACATCTCAATCTTCAGTGATCAG...AAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCCTCACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR TCA 90 bp GCTAAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACGCTATTGCTGATCACTaGAGATTGAGATGTCATTCA +
Preference number: 4 (lower is better)
Translates to: AKEGDLDWEDQSTHGISNAIADH*RLRCHS
Trigger: TGAATGACATCTCAATCTTCAGTGATCAGCAATAGC...GTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTTAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR TCA 90 bp TGGGAAGATCAAAGCACACATGGGATTTCTAACATTAGCATTCTACCTCTTAACTCACACAGCTATTGCTaGTCACTGAAGATTGAGATG +
Preference number: 4 (lower is better)
Translates to: WEDQSTHGISNISILPLNSHSYC*SLKIEM
Trigger: CATCTCAATCTTCAGTGATCAGCAATAGCTGTGTGA...GTTAAGAGGTAGAATGCTAATGTTAGAAATCCCATGTGTGCTTTGATCTTCCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR TCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTGAAAGGGCAGACTCTTaGGAACACCAAGCTTTCCTT +
Preference number: 4 (lower is better)
Translates to: QSPETMLSIIGCVSFYSIERADS*EHQAFL
Trigger: AAGGAAAGCTTGGTGTTCTCAAGAGTCTGCCCTTTC...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR TCA 90 bp CCTTGGCCTCAACGTCATAGACAATATCATCTATTTTCTCCCAATGGTTTCACAATGAGGTCAAATTTATaGCTGAAGTCTTGTCCACAC +
Preference number: 4 (lower is better)
Translates to: PWPQRHRQYHLFSPNGFTMRSNL*LKSCPH
Trigger: GTGTGGACAAGACTTCAGTCATAAATTTGACCTCAT...TGTGAAACCATTGGGAGAAAATAGATGATATTGTCTATGACGTTGAGGCCAAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR TCA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTGAGGGCGATCACTTTTaGAGTCAGGAGTTCAAGACT +
Preference number: 4 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSIEGDHF*SQEFKT
Trigger: AGTCTTGAACTCCTGACTTCAAAAGTGATCGCCCTC...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR TCA 90 bp ACAGCTAAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAATAACAGATACCTCTaGCAGCTAAAGAAGGGGATT +
Preference number: 4 (lower is better)
Translates to: TAKEGDLDWEDQSTHGISNNRYL*QLKKGI
Trigger: AATCCCCTTCTTTAGCTGTCAGAGGTATCTGTTATT...AGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTTAGCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427117.5
ENST00000586353.5
CDS-3UTR TCA 90 bp TGCACAGCACATATAACCGGCAAGGACGACAATCCACAATATTTAAGAAATGCAAATAACAGATACCTCTaGCAGCTAAAGAAGGGGATT +
Preference number: 4 (lower is better)
Translates to: CTAHITGKDDNPQYLRNANNRYL*QLKKGI
Trigger: AATCCCCTTCTTTAGCTGTCAGAGGTATCTGTTATT...TGCATTTCTTAAATATTGTGGATTGTCGTCCTTGCCGGTTATATGTGCTGTGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000586353.5
CDS-3UTR TCA 90 bp GGGAAGATCAAAGCACACATGGGATTTCTAACATTAGCATTCTACCTCTTAACAACAACTGGGCAATGTTaGGTAAGGCTGAAAATGCAT +
Preference number: 4 (lower is better)
Translates to: GKIKAHMGFLTLAFYLLTTTGQC*VRLKMH
Trigger: ATGCATTTTCAGCCTTACTCAACATTGCCCAGTTGT...TGTTAAGAGGTAGAATGCTAATGTTAGAAATCCCATGTGTGCTTTGATCTTCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427117.5
ENST00000586353.5
CDS-3UTR CCA 90 bp AGTGAGGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTAACTTCCCAAACTTCTaGACAGTGCCTCCCAAACAT +
Preference number: 4 (lower is better)
Translates to: SEGVSSILFKIVAAIHTLNFPNF*TVPPKH
Trigger: ATGTTTGGGAGGCACTGTCCAGAAGTTTGGGAAGTT...AAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCCTCACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CCA 90 bp ATGTCAGGTCTAACATACACTGAGTTCACATATATTCATGAATCTGCTTCTGGAAACTTCCCAAACTTCTaGACAGTGCCTCCCAAACAT +
Preference number: 4 (lower is better)
Translates to: MSGLTYTEFTYIHESASGNFPNF*TVPPKH
Trigger: ATGTTTGGGAGGCACTGTCCAGAAGTTTGGGAAGTT...TCCAGAAGCAGATTCATGAATATATGTGAACTCAGTGTATGTTAGACCTGACAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CCA 90 bp GCTAAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACGAAGGGGATTTAGATTaGGAAGATCAAAGCACACAT +
Preference number: 4 (lower is better)
Translates to: AKEGDLDWEDQSTHGISNEGDLD*EDQSTH
Trigger: ATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTC...GTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTTAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427117.5
ENST00000586353.5
CDS-3UTR TCA 90 bp ATCCATGTTACACAATATGGATCTGGTTCACTGCTTTTAAGTGCTGTATACTATCTGATCACTGAAGATTaGGATGTCATTCAGACCCTG +
Preference number: 4 (lower is better)
Translates to: IHVTQYGSGSLLLSAVYYLITED*DVIQTL
Trigger: CAGGGTCTGAATGACATCTCAATCTTCAGTGATCAG...ATAGTATACAGCACTTAAAAGCAGTGAACCAGATCCATATTGTGTAACATGGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR TCA 90 bp AGTGAGGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTTCACACAGCTATTGCTaGTCACTGAAGATTGAGATG +
Preference number: 4 (lower is better)
Translates to: SEGVSSILFKIVAAIHTLSHSYC*SLKIEM
Trigger: CATCTCAATCTTCAGTGATCAGCAATAGCTGTGTGA...AAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCCTCACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR TCA 90 bp ATGTCAGGTCTAACATACACTGAGTTCACATATATTCATGAATCTGCTTCTGGATCTTGGAGATGGATGTaGCTTTCCTCACAAGTGTTT +
Preference number: 4 (lower is better)
Translates to: MSGLTYTEFTYIHESASGSWRWM*LSSQVF
Trigger: AAACACTTGTGAGGAAAGTCACATCCATCTCCAAGA...TCCAGAAGCAGATTCATGAATATATGTGAACTCAGTGTATGTTAGACCTGACAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR TCA 90 bp AGTGAGGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTTCTTGGAGATGGATGTaGCTTTCCTCACAAGTGTTT +
Preference number: 4 (lower is better)
Translates to: SEGVSSILFKIVAAIHTLSWRWM*LSSQVF
Trigger: AAACACTTGTGAGGAAAGTCACATCCATCTCCAAGA...AAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCCTCACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR GCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTCAAACTTCTGGACAGTaGCTCCCAAACATTTCTTCC +
Preference number: 4 (lower is better)
Translates to: QSPETMLSIIGCVSFYSIQTSGQ*LPNISS
Trigger: GGAAGAAATGTTTGGGAGGCACTGTCCAGAAGTTTG...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR GCA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTCAAACTTCTGGACAGTaGCTCCCAAACATTTCTTCC +
Preference number: 4 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSIQTSGQ*LPNISS
Trigger: GGAAGAAATGTTTGGGAGGCACTGTCCAGAAGTTTG...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CCA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTTTCCTTTCCATCATGTaGCTCAAACGCTCCATTGTC +
Preference number: 4 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSIFLSIM*LKRSIV
Trigger: GACAATGGAGCGTTTGAGCCACATGATGGAAAGGAA...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR CCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTAACTTCCCAAACTTCTaGACAGTGCCTCCCAAACAT +
Preference number: 4 (lower is better)
Translates to: QSPETMLSIIGCVSFYSINFPNF*TVPPKH
Trigger: ATGTTTGGGAGGCACTGTCCAGAAGTTTGGGAAGTT...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CCA 90 bp GGGAAGATCAAAGCACACATGGGATTTCTAACATTAGCATTCTACCTCTTAACAGAAGGGGATTTAGATTaGGAAGATCAAAGCACACAT +
Preference number: 4 (lower is better)
Translates to: GKIKAHMGFLTLAFYLLTEGDLD*EDQSTH
Trigger: ATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTC...TGTTAAGAGGTAGAATGCTAATGTTAGAAATCCCATGTGTGCTTTGATCTTCCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427117.5
ENST00000586353.5
CDS-3UTR TCA 90 bp AGTGAGGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTGCTATTGCTGATCACTaGAGATTGAGATGTCATTCA +
Preference number: 4 (lower is better)
Translates to: SEGVSSILFKIVAAIHTLAIADH*RLRCHS
Trigger: TGAATGACATCTCAATCTTCAGTGATCAGCAATAGC...AAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCCTCACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR TCA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTTCACACAGCTATTGCTaGTCACTGAAGATTGAGATG +
Preference number: 4 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSISHSYC*SLKIEM
Trigger: CATCTCAATCTTCAGTGATCAGCAATAGCTGTGTGA...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR TCA 90 bp ATCCATGTTACACAATATGGATCTGGTTCACTGCTTTTAAGTGCTGTATACTATTCTTGGAGATGGATGTaGCTTTCCTCACAAGTGTTT +
Preference number: 4 (lower is better)
Translates to: IHVTQYGSGSLLLSAVYYSWRWM*LSSQVF
Trigger: AAACACTTGTGAGGAAAGTCACATCCATCTCCAAGA...ATAGTATACAGCACTTAAAAGCAGTGAACCAGATCCATATTGTGTAACATGGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR TCA 90 bp ATCCATGTTACACAATATGGATCTGGTTCACTGCTTTTAAGTGCTGTATACTATCAAACCCTTATCAAGTaGGTCACAGTCATAGAAGCT +
Preference number: 4 (lower is better)
Translates to: IHVTQYGSGSLLLSAVYYQTLIK*VTVIEA
Trigger: AGCTTCTATGACTGTGACTCACTTGATAAGGGTTTG...ATAGTATACAGCACTTAAAAGCAGTGAACCAGATCCATATTGTGTAACATGGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR TCA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTCAAACCCTTATCAAGTaGGTCACAGTCATAGAAGCT +
Preference number: 4 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSIQTLIK*VTVIEA
Trigger: AGCTTCTATGACTGTGACTCACTTGATAAGGGTTTG...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR TCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTCAAACCCTTATCAAGTaGGTCACAGTCATAGAAGCT +
Preference number: 4 (lower is better)
Translates to: QSPETMLSIIGCVSFYSIQTLIK*VTVIEA
Trigger: AGCTTCTATGACTGTGACTCACTTGATAAGGGTTTG...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR TCA 90 bp AGTGAGGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTATGAGGTCAAATTTATaGCTGAAGTCTTGTCCACAC +
Preference number: 4 (lower is better)
Translates to: SEGVSSILFKIVAAIHTLMRSNL*LKSCPH
Trigger: GTGTGGACAAGACTTCAGTCATAAATTTGACCTCAT...AAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCCTCACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR TCA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTGGTTTCTCAGCTGTATaGTTTCGCATATGTACGGTT +
Preference number: 4 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSIGFSAV*FRICTV
Trigger: AACCGTACATATGCGAAATCATACAGCTGAGAAACC...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000619231.4
CDS-3UTR TCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTGGTTTCTCAGCTGTATaGTTTCGCATATGTACGGTT +
Preference number: 4 (lower is better)
Translates to: QSPETMLSIIGCVSFYSIGFSAV*FRICTV
Trigger: AACCGTACATATGCGAAATCATACAGCTGAGAAACC...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000619231.4
CDS-3UTR CCA 90 bp CCTTGGCCTCAACGTCATAGACAATATCATCTATTTTCTCCCAATGGTTTCACATGCACAATGGTAAAATaGTTTCCCAAACTCATTACT +
Preference number: 4 (lower is better)
Translates to: PWPQRHRQYHLFSPNGFTCTMVK*FPKLIT
Trigger: AGTAATGAGTTTGGGAAACCATTTTACCATTGTGCA...TGTGAAACCATTGGGAGAAAATAGATGATATTGTCTATGACGTTGAGGCCAAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CCA 90 bp AGCATTCTACCTCTTAACATGGGTGTTCAGTCCCCCTTAATATATTACACATGTACTTTAGAAAACAACTaGGCAATGTTGAGTAAGGCT +
Preference number: 4 (lower is better)
Translates to: SILPLNMGVQSPLIYYTCTLENN*AMLSKA
Trigger: AGCCTTACTCAACATTGCCCAGTTGTTTTCTAAAGT...ACATGTGTAATATATTAAGGGGGACTGAACACCCATGTTAAGAGGTAGAATGCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427117.5
ENST00000586353.5
CDS-3UTR CCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTTGTGTTTTATCCTTGTaGAACCAGGACCTGTGGATT +
Preference number: 4 (lower is better)
Translates to: QSPETMLSIIGCVSFYSICVLSL*NQDLWI
Trigger: AATCCACAGGTCCTGGTTCCACAAGGATAAAACACA...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000619231.4
CDS-3UTR TCA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTGCTATTGCTGATCACTaGAGATTGAGATGTCATTCA +
Preference number: 4 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSIAIADH*RLRCHS
Trigger: TGAATGACATCTCAATCTTCAGTGATCAGCAATAGC...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR TCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTATGAGGTCAAATTTATaGCTGAAGTCTTGTCCACAC +
Preference number: 4 (lower is better)
Translates to: QSPETMLSIIGCVSFYSIMRSNL*LKSCPH
Trigger: GTGTGGACAAGACTTCAGTCATAAATTTGACCTCAT...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR GCA 90 bp AAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACATTGACTTCTATTTGCACTaGAGATGTGTTTTATCCTTG +
Preference number: 4 (lower is better)
Translates to: KEGDLDWEDQSTHGISNIDFYLH*RCVLSL
Trigger: CAAGGATAAAACACATCTGCAGTGCAAATAGAAGTC...AATGTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR GCA 90 bp AGTGAGGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTACAAGTGTTTCCTGTTaGTTCTTGATCTGTTCATCA +
Preference number: 4 (lower is better)
Translates to: SEGVSSILFKIVAAIHTLTSVSC*FLICSS
Trigger: TGATGAACAGATCAAGAAGCAACAGGAAACACTTGT...AAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCCTCACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR GCA 90 bp ATGTCAGGTCTAACATACACTGAGTTCACATATATTCATGAATCTGCTTCTGGAACAAGTGTTTCCTGTTaGTTCTTGATCTGTTCATCA +
Preference number: 4 (lower is better)
Translates to: MSGLTYTEFTYIHESASGTSVSC*FLICSS
Trigger: TGATGAACAGATCAAGAAGCAACAGGAAACACTTGT...TCCAGAAGCAGATTCATGAATATATGTGAACTCAGTGTATGTTAGACCTGACAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CCA 90 bp GGGAAGATCAAAGCACACATGGGATTTCTAACATTAGCATTCTACCTCTTAACATGTGTTTTATCCTTGTaGAACCAGGACCTATTAAAA +
Preference number: 4 (lower is better)
Translates to: GKIKAHMGFLTLAFYLLTCVLSL*NQDLLK
Trigger: TTTTAATAGGTCCTGGTTCCACAAGGATAAAACACA...TGTTAAGAGGTAGAATGCTAATGTTAGAAATCCCATGTGTGCTTTGATCTTCCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR CCA 90 bp AGTGAGGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTATGTGCCACTGCATCTaGCTATACATACATACATAT +
Preference number: 4 (lower is better)
Translates to: SEGVSSILFKIVAAIHTLMCHCI*LYIHTY
Trigger: ATATGTATGTATGTATAGCCAGATGCAGTGGCACAT...AAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCCTCACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CCA 90 bp AGTGAGGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTTACACAATATGGATCTaGTTCACTGCTTTTAAGTGC +
Preference number: 4 (lower is better)
Translates to: SEGVSSILFKIVAAIHTLYTIWI*FTAFKC
Trigger: GCACTTAAAAGCAGTGAACCAGATCCATATTGTGTA...AAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCCTCACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR GCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTGACTTCTATTTGCACTaGAGATGTGTTTTATCCTTG +
Preference number: 4 (lower is better)
Translates to: QSPETMLSIIGCVSFYSIDFYLH*RCVLSL
Trigger: CAAGGATAAAACACATCTGCAGTGCAAATAGAAGTC...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR GCA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTGACTTCTATTTGCACTaGAGATGTGTTTTATCCTTG +
Preference number: 4 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSIDFYLH*RCVLSL
Trigger: CAAGGATAAAACACATCTGCAGTGCAAATAGAAGTC...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR GCA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTACAAGTGTTTCCTGTTaGTTCTTGATCTGTTCATCA +
Preference number: 4 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSITSVSC*FLICSS
Trigger: TGATGAACAGATCAAGAAGCAACAGGAAACACTTGT...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR GCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTACAAGTGTTTCCTGTTaGTTCTTGATCTGTTCATCA +
Preference number: 4 (lower is better)
Translates to: QSPETMLSIIGCVSFYSITSVSC*FLICSS
Trigger: TGATGAACAGATCAAGAAGCAACAGGAAACACTTGT...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CCA 90 bp ATGTCAGGTCTAACATACACTGAGTTCACATATATTCATGAATCTGCTTCTGGATGTGTTTTATCCTTGTaGAACCAGGACCTATTAAAA +
Preference number: 4 (lower is better)
Translates to: MSGLTYTEFTYIHESASGCVLSL*NQDLLK
Trigger: TTTTAATAGGTCCTGGTTCCACAAGGATAAAACACA...TCCAGAAGCAGATTCATGAATATATGTGAACTCAGTGTATGTTAGACCTGACAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333987.12
CDS-3UTR CCA 90 bp AGTGAGGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTTGCACAATGGTAAAATaGTTTCCCAAACTCATTACT +
Preference number: 4 (lower is better)
Translates to: SEGVSSILFKIVAAIHTLCTMVK*FPKLIT
Trigger: AGTAATGAGTTTGGGAAACCATTTTACCATTGTGCA...AAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCCTCACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CCA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTATGTGCCACTGCATCTaGCTATACATACATACATAT +
Preference number: 4 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSIMCHCI*LYIHTY
Trigger: ATATGTATGTATGTATAGCCAGATGCAGTGGCACAT...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CCA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTTACACAATATGGATCTaGTTCACTGCTTTTAAGTGC +
Preference number: 4 (lower is better)
Translates to: QSPETMLSIIGCVSFYSIYTIWI*FTAFKC
Trigger: GCACTTAAAAGCAGTGAACCAGATCCATATTGTGTA...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CCA 90 bp ATCCATGTTACACAATATGGATCTGGTTCACTGCTTTTAAGTGCTGTATACTATTACACAATATGGATCTaGTTCACTGCTTTTAAGTGC +
Preference number: 4 (lower is better)
Translates to: IHVTQYGSGSLLLSAVYYYTIWI*FTAFKC
Trigger: GCACTTAAAAGCAGTGAACCAGATCCATATTGTGTA...ATAGTATACAGCACTTAAAAGCAGTGAACCAGATCCATATTGTGTAACATGGAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CCA 90 bp ATCCATGTTACACAATATGGATCTGGTTCACTGCTTTTAAGTGCTGTATACTATTGCACAATGGTAAAATaGTTTCCCAAACTCATTACT +
Preference number: 4 (lower is better)
Translates to: IHVTQYGSGSLLLSAVYYCTMVK*FPKLIT
Trigger: AGTAATGAGTTTGGGAAACCATTTTACCATTGTGCA...ATAGTATACAGCACTTAAAAGCAGTGAACCAGATCCATATTGTGTAACATGGAT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CCA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTTCTATTTTCTCCCAATaGTTTCACAGTTTGGCTTTT +
Preference number: 4 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSISIFSQ*FHSLAF
Trigger: AAAAGCCAAACTGTGAAACCATTGGGAGAAAATAGA...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS CCA 90 bp CCCACTCCCTGCCTGCGCGCGGCCCGACACTGCCCTCTGCCGAGCTaGGGGCCAGTGGCCCTGACACCCTTCTCCCATCCCGACTGCACC +
Preference number: 5 (lower is better)
Translates to: PTPCLRAARHCPLPS*GPVALTPFSHPDCT
Trigger: GGTGCAGTCGGGATGGGAGAAGGGTGTCAGGGCCACTGGCCCCCAGCTCGGCAGAGGGCAGTGTCGGGCCGCGCGCAGGCAGGGAGTGGG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000433993.5
ENST00000586353.5
CDS TCA 90 bp GCCGGGACGCCTCACCGCCCCCTTCGGCGTCCTAGCACTCAGGTCTaGACGAGTCCATCCCAACCCAGCGAGCTCCGCAGCCCGGGACGT +
Preference number: 5 (lower is better)
Translates to: AGTPHRPLRRPSTQV*TSPSQPSELRSPGR
Trigger: ACGTCCCGGGCTGCGGAGCTCGCTGGGTTGGGATGGACTCGTTCAGACCTGAGTGCTAGGACGCCGAAGGGGGCGGTGAGGCGTCCCGGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000433993.5
ENST00000586353.5
ENST00000592567.1
CDS GCA 90 bp ACTCTGGGCCTTAGAGGATCCGTGTCCCGTCAACCGCGAGTCCCTTaGTCGCCCCCTGCTGCGGGGACTCGGCAGCGTCACCTGCCGGAA +
Preference number: 5 (lower is better)
Translates to: TLGLRGSVSRQPRVP*SPPAAGTRQRHLPE
Trigger: TTCCGGCAGGTGACGCTGCCGAGTCCCCGCAGCAGGGGGCGAGCAAGGGACTCGCGGTTGACGGGACACGGATCCTCTAAGGCCCAGAGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000427117.5
ENST00000444991.5
ENST00000455427.6
ENST00000587130.5
ENST00000587857.5
CDS GCA 90 bp AGGATCCGTGTCCCGTCAACCGCGAGTCCCTTGCTCGCCCCCTGCTaGGGGGACTCGGCAGCGTCACCTGCCGGAAACACCCGAATGTTC +
Preference number: 5 (lower is better)
Translates to: RIRVPSTASPLLAPC*GDSAASPAGNTRMF
Trigger: GAACATTCGGGTGTTTCCGGCAGGTGACGCTGCCGAGTCCCCGCAGCAGGGGGCGAGCAAGGGACTCGCGGTTGACGGGACACGGATCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000427117.5
ENST00000444991.5
ENST00000587130.5
CDS TCA 90 bp GCAGTTTCTGAGATGCTGGGTGAAGGCGACCCGCAGATAGGTCTGTaGCAGACGCCTAAAGCGCCGAACCATCCCTCCGCGCCAGCGACG +
Preference number: 5 (lower is better)
Translates to: AVSEMLGEGDPQIGL*QTPKAPNHPSAPAT
Trigger: CGTCGCTGGCGCGGAGGGATGGTTCGGCGCTTTAGGCGTCTGTCACAGACCTATCTGCGGGTCGCCTTCACCCAGCATCTCAGAAACTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000427117.5
ENST00000587130.5
CDS CCA 90 bp TTAGCGTACCCTGAGCACTCCCCACTGCCGCTACTCGGGACACTCTaGGCCTTAGAGGATCCGTGTCCCGTCAACCGCGAGTCCCTTGCT +
Preference number: 5 (lower is better)
Translates to: LAYPEHSPLPLLGTL*ALEDPCPVNRESLA
Trigger: AGCAAGGGACTCGCGGTTGACGGGACACGGATCCTCTAAGGCCCAGAGTGTCCCGAGTAGCGGCAGTGGGGAGTGCTCAGGGTACGCTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000427117.5
ENST00000444991.5
ENST00000455427.6
ENST00000587130.5
ENST00000587857.5
CDS GCA 90 bp GTTCTCTCCTCTTCTGGGTTCTCCCCTAGCGGTGAAGCGTGGGCATaGAGCCCGCACATCTCCGAGAGCCACCTGTCTTTTAAACTCCAG +
Preference number: 5 (lower is better)
Translates to: VLSSSGFSPSGEAWA*SPHISESHLSFKLQ
Trigger: CTGGAGTTTAAAAGACAGGTGGCTCTCGGAGATGTGCGGGCTGCATGCCCACGCTTCACCGCTAGGGGAGAACCCAGAAGAGGAGAGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000592567.1
CDS TCA 90 bp GCCCAGCAATATGCTCTTTACAAGACACAGATCATTAGCGTACCCTaGGCACTCCCCACTGCCGCTACTCGGGACACTCTGGGCCTTAGA +
Preference number: 5 (lower is better)
Translates to: AQQYALYKTQIISVP*ALPTAATRDTLGLR
Trigger: TCTAAGGCCCAGAGTGTCCCGAGTAGCGGCAGTGGGGAGTGCTCAGGGTACGCTAATGATCTGTGTCTTGTAAAGAGCATATTGCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000427117.5
ENST00000444991.5
ENST00000455427.6
ENST00000587130.5
ENST00000587857.5
CDS-3UTR CAA 90 bp CCTTGGCCTCAACGTCATAGACAATATCATCTATTTTCTCCCAATGGTTTCACATCAACCGCGAGTCCCTaGCTCGCCCCCTGCTGCGGG +
Preference number: 5 (lower is better)
Translates to: PWPQRHRQYHLFSPNGFTSTASP*LAPCCG
Trigger: CCCGCAGCAGGGGGCGAGCAAGGGACTCGCGGTTGA...TGTGAAACCATTGGGAGAAAATAGATGATATTGTCTATGACGTTGAGGCCAAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS-3UTR CAA 90 bp ACAGCTAAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTTCAACCGCGAGTCCCTaGCTCGCCCCCTGCTGCGGG +
Preference number: 5 (lower is better)
Translates to: TAKEGDLDWEDQSTHGISSTASP*LAPCCG
Trigger: CCCGCAGCAGGGGGCGAGCAAGGGACTCGCGGTTGA...AGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTTAGCTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR CAA 90 bp AGTGAGGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTTCAACCGCGAGTCCCTaGCTCGCCCCCTGCTGCGGG +
Preference number: 5 (lower is better)
Translates to: SEGVSSILFKIVAAIHTLSTASP*LAPCCG
Trigger: CCCGCAGCAGGGGGCGAGCAAGGGACTCGCGGTTGA...AAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCCTCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000415168.5
CDS TCA 90 bp CATGTGGCTCAAACGCTCCATTGTCACACAGCTATTGCTGATCACTaGAGATTGAGATGTCATTCAGACCCTGCCTGCTCTGGGCAGAAG +
Preference number: 5 (lower is better)
Translates to: HVAQTLHCHTAIADH*RLRCHSDPACSGQK
Trigger: CTTCTGCCCAGAGCAGGCAGGGTCTGAATGACATCTCAATCTTCAGTGATCAGCAATAGCTGTGTGACAATGGAGCGTTTGAGCCACATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000333987.12
ENST00000427117.5
ENST00000444991.5
ENST00000617745.4
ENST00000619231.4
CDS TCA 90 bp TTTCCATCATGTGGCTCAAACGCTCCATTGTCACACAGCTATTGCTaGTCACTGAAGATTGAGATGTCATTCAGACCCTGCCTGCTCTGG +
Preference number: 5 (lower is better)
Translates to: FPSCGSNAPLSHSYC*SLKIEMSFRPCLLW
Trigger: CCAGAGCAGGCAGGGTCTGAATGACATCTCAATCTTCAGTGATCAGCAATAGCTGTGTGACAATGGAGCGTTTGAGCCACATGATGGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000333987.12
ENST00000427117.5
ENST00000444991.5
ENST00000617745.4
ENST00000619231.4
CDS CCA 90 bp AAGCCACTGATATTCTCTATGGGCTGTGCACTGCATGGAAGTAAATaGTATTACAGCTGGTCTGAAATGTCCCTCCTGATGACCCTGTTG +
Preference number: 5 (lower is better)
Translates to: KPLIFSMGCALHGSK*YYSWSEMSLLMTLL
Trigger: CAACAGGGTCATCAGGAGGGACATTTCAGACCAGCTGTAATACCATTTACTTCCATGCAGTGCACAGCCCATAGAGAATATCAGTGGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000433993.5
ENST00000444991.5
ENST00000455427.6
ENST00000591887.1
ENST00000617745.4
CDS-3UTR CAA 90 bp CCTTGGCCTCAACGTCATAGACAATATCATCTATTTTCTCCCAATGGTTTCACAGGAAAGGGCAGACTCTaGAGAACACCAAGCTTTCCT +
Preference number: 5 (lower is better)
Translates to: PWPQRHRQYHLFSPNGFTGKGRL*RTPSFP
Trigger: AGGAAAGCTTGGTGTTCTCAAGAGTCTGCCCTTTCC...TGTGAAACCATTGGGAGAAAATAGATGATATTGTCTATGACGTTGAGGCCAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR CAA 90 bp GCTAAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACTTTCAAGAGGCCTGGTaGTATCCTCTTCTTCCTCGG +
Preference number: 5 (lower is better)
Translates to: AKEGDLDWEDQSTHGISNFQEAW*YPLLPR
Trigger: CCGAGGAAGAAGAGGATACAACCAGGCCTCTTGAAA...GTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR CAA 90 bp CCTTGGCCTCAACGTCATAGACAATATCATCTATTTTCTCCCAATGGTTTCACATTTCAAGAGGCCTGGTaGTATCCTCTTCTTCCTCGG +
Preference number: 5 (lower is better)
Translates to: PWPQRHRQYHLFSPNGFTFQEAW*YPLLPR
Trigger: CCGAGGAAGAAGAGGATACAACCAGGCCTCTTGAAA...TGTGAAACCATTGGGAGAAAATAGATGATATTGTCTATGACGTTGAGGCCAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR CAA 90 bp AAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACATTGGAAAGGGCAGACTCTaGAGAACACCAAGCTTTCCT +
Preference number: 5 (lower is better)
Translates to: KEGDLDWEDQSTHGISNIGKGRL*RTPSFP
Trigger: AGGAAAGCTTGGTGTTCTCAAGAGTCTGCCCTTTCC...AATGTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR CAA 90 bp AGTGAGGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTTTTCAAGAGGCCTGGTaGTATCCTCTTCTTCCTCGG +
Preference number: 5 (lower is better)
Translates to: SEGVSSILFKIVAAIHTLFQEAW*YPLLPR
Trigger: CCGAGGAAGAAGAGGATACAACCAGGCCTCTTGAAA...AAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCCTCACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR CAA 90 bp ATCCATGTTACACAATATGGATCTGGTTCACTGCTTTTAAGTGCTGTATACTATGGAAAGGGCAGACTCTaGAGAACACCAAGCTTTCCT +
Preference number: 5 (lower is better)
Translates to: IHVTQYGSGSLLLSAVYYGKGRL*RTPSFP
Trigger: AGGAAAGCTTGGTGTTCTCAAGAGTCTGCCCTTTCC...ATAGTATACAGCACTTAAAAGCAGTGAACCAGATCCATATTGTGTAACATGGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333987.12
ENST00000619231.4
CDS-3UTR CAA 90 bp CCTTGGCCTCAACGTCATAGACAATATCATCTATTTTCTCCCAATGGTTTCACAACAACATACAAGAACTaGTTTAGCTGGTACTCAGGG +
Preference number: 5 (lower is better)
Translates to: PWPQRHRQYHLFSPNGFTTTYKN*FSWYSG
Trigger: CCCTGAGTACCAGCTAAACAAGTTCTTGTATGTTGT...TGTGAAACCATTGGGAGAAAATAGATGATATTGTCTATGACGTTGAGGCCAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000616085.1
CDS TCA 90 bp GAACAGCCAATTTCCAACTTCACAAGAGACAAACCATTCTTTTGGTaGGCAAGAAACATTAACTCATCCAGGTACTTGAAAAGCACTTGG +
Preference number: 5 (lower is better)
Translates to: EQPISNFTRDKPFFW*ARNINSSRYLKSTW
Trigger: CCAAGTGCTTTTCAAGTACCTGGATGAGTTAATGTTTCTTGCTCACCAAAAGAATGGTTTGTCTCTTGTGAAGTTGGAAATTGGCTGTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000591887.1
CDS-3UTR CAA 90 bp CCTTGGCCTCAACGTCATAGACAATATCATCTATTTTCTCCCAATGGTTTCACATCGATACAAGTTTCTTaGAGCAGGTTTCATTTGCTC +
Preference number: 5 (lower is better)
Translates to: PWPQRHRQYHLFSPNGFTSIQVS*SRFHLL
Trigger: GAGCAAATGAAACCTGCTCAAAGAAACTTGTATCGA...TGTGAAACCATTGGGAGAAAATAGATGATATTGTCTATGACGTTGAGGCCAAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CAA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTAGAGGGCGATCACTTTaGAAGTCAGGAGTTCAAGAC +
Preference number: 5 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSIRGRSL*KSGVQD
Trigger: GTCTTGAACTCCTGACTTCAAAAGTGATCGCCCTCT...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CAA 90 bp CAATCTCCAGAGACAATGCTATCAATAATTGGGTGTGTATCCTTCTATTCTATTAGAGGGCGATCACTTTaGAAGTCAGGAGTTCAAGAC +
Preference number: 5 (lower is better)
Translates to: QSPETMLSIIGCVSFYSIRGRSL*KSGVQD
Trigger: GTCTTGAACTCCTGACTTCAAAAGTGATCGCCCTCT...AATAGAATAGAAGGATACACACCCAATTATTGATAGCATTGTCTCTGGAGATTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CAA 90 bp ATCCATGTTACACAATATGGATCTGGTTCACTGCTTTTAAGTGCTGTATACTATAGAGGGCGATCACTTTaGAAGTCAGGAGTTCAAGAC +
Preference number: 5 (lower is better)
Translates to: IHVTQYGSGSLLLSAVYYRGRSL*KSGVQD
Trigger: GTCTTGAACTCCTGACTTCAAAAGTGATCGCCCTCT...ATAGTATACAGCACTTAAAAGCAGTGAACCAGATCCATATTGTGTAACATGGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CAA 90 bp GGGAAGATCAAAGCACACATGGGATTTCTAACATTAGCATTCTACCTCTTAACAAGAAGGGGATTTAGATaGGGAAGATCAAAGCACACA +
Preference number: 5 (lower is better)
Translates to: GKIKAHMGFLTLAFYLLTRRGFR*GRSKHT
Trigger: TGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCT...TGTTAAGAGGTAGAATGCTAATGTTAGAAATCCCATGTGTGCTTTGATCTTCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427117.5
ENST00000586353.5
CDS-3UTR CAA 90 bp AGCATTCTACCTCTTAACATGGGTGTTCAGTCCCCCTTAATATATTACACATGTAACAACTGGGCAATGTaGAGTAAGGCTGAAAATGCA +
Preference number: 5 (lower is better)
Translates to: SILPLNMGVQSPLIYYTCNNWAM*SKAENA
Trigger: TGCATTTTCAGCCTTACTCAACATTGCCCAGTTGTT...ACATGTGTAATATATTAAGGGGGACTGAACACCCATGTTAAGAGGTAGAATGCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427117.5
ENST00000586353.5
CDS-3UTR CAA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTAGATGTGTTTTATCCTaGTGGAACCAGGACCTGTGG +
Preference number: 5 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSIRCVLS*WNQDLW
Trigger: CCACAGGTCCTGGTTCCACAAGGATAAAACACATCT...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000619231.4
CDS-3UTR CAA 90 bp CCTTGGCCTCAACGTCATAGACAATATCATCTATTTTCTCCCAATGGTTTCACAAAGATCCTGGCTTTTTaGAGCTTATGCCAAGATATT +
Preference number: 5 (lower is better)
Translates to: PWPQRHRQYHLFSPNGFTKILAF*SLCQDI
Trigger: AATATCTTGGCATAAGCTCAAAAAAGCCAGGATCTT...TGTGAAACCATTGGGAGAAAATAGATGATATTGTCTATGACGTTGAGGCCAAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CAA 90 bp AAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACATTAGAAGGGGATTTAGATaGGGAAGATCAAAGCACACA +
Preference number: 5 (lower is better)
Translates to: KEGDLDWEDQSTHGISNIRRGFR*GRSKHT
Trigger: TGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCT...AATGTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427117.5
ENST00000586353.5
CDS-3UTR CAA 90 bp TGCACAGCACATATAACCGGCAAGGACGACAATCCACAATATTTAAGAAATGCATACAGTAGGATAAGTTaGCAATGTGAATGGATCTCT +
Preference number: 5 (lower is better)
Translates to: CTAHITGKDDNPQYLRNAYSRIS*QCEWIS
Trigger: AGAGATCCATTCACATTGCAAACTTATCCTACTGTA...TGCATTTCTTAAATATTGTGGATTGTCGTCCTTGCCGGTTATATGTGCTGTGCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000586353.5
CDS-3UTR CAA 90 bp AAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACATTAACAACTGGGCAATGTaGAGTAAGGCTGAAAATGCA +
Preference number: 5 (lower is better)
Translates to: KEGDLDWEDQSTHGISNINNWAM*SKAENA
Trigger: TGCATTTTCAGCCTTACTCAACATTGCCCAGTTGTT...AATGTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427117.5
ENST00000586353.5
CDS CCA 90 bp ATTACACTTAAAGGGGGTTACAACATAGGATGCACAATGGTAAAATaGTTTCCCAAACTCATTACTCTGTTTCTCTCTTACACAGCCTTT +
Preference number: 5 (lower is better)
Translates to: ITLKGGYNIGCTMVK*FPKLITLFLSYTAF
Trigger: AAAGGCTGTGTAAGAGAGAAACAGAGTAATGAGTTTGGGAAACCATTTTACCATTGTGCATCCTATGTTGTAACCCCCTTTAAGTGTAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000587857.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CAA 90 bp AAAGAAGGGGATTTAGATTGGGAAGATCAAAGCACACATGGGATTTCTAACATTTCGATACAAGTTTCTTaGAGCAGGTTTCATTTGCTC +
Preference number: 5 (lower is better)
Translates to: KEGDLDWEDQSTHGISNISIQVS*SRFHLL
Trigger: GAGCAAATGAAACCTGCTCAAAGAAACTTGTATCGA...AATGTTAGAAATCCCATGTGTGCTTTGATCTTCCCAATCTAAATCCCCTTCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR CAA 90 bp GGGAAGATCAAAGCACACATGGGATTTCTAACATTAGCATTCTACCTCTTAACATACAGTAGGATAAGTTaGCAATGTGAATGGATCTCT +
Preference number: 5 (lower is better)
Translates to: GKIKAHMGFLTLAFYLLTYSRIS*QCEWIS
Trigger: AGAGATCCATTCACATTGCAAACTTATCCTACTGTA...TGTTAAGAGGTAGAATGCTAATGTTAGAAATCCCATGTGTGCTTTGATCTTCCC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000427117.5
ENST00000586353.5
CDS-3UTR CAA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTAGATGTGTTTTATCCTaGTGGAACCAGGACCTATTA +
Preference number: 5 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSIRCVLS*WNQDLL
Trigger: TAATAGGTCCTGGTTCCACAAGGATAAAACACATCT...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000333987.12
CDS-3UTR CAA 90 bp AACACTTTAGAAAACAACTGGGCAATGTTGAGTAAGGCTGAAAATGCATATAACAGATGTGTTTTATCCTaGTGGAACCAGGACCTATTA +
Preference number: 5 (lower is better)
Translates to: NTLENNWAMLSKAENAYNRCVLS*WNQDLL
Trigger: TAATAGGTCCTGGTTCCACAAGGATAAAACACATCT...GTTATATGCATTTTCAGCCTTACTCAACATTGCCCAGTTGTTTTCTAAAGTGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000427117.5
CDS-3UTR CAA 90 bp ATCCATGTTACACAATATGGATCTGGTTCACTGCTTTTAAGTGCTGTATACTATTCGATACAAGTTTCTTaGAGCAGGTTTCATTTGCTC +
Preference number: 5 (lower is better)
Translates to: IHVTQYGSGSLLLSAVYYSIQVS*SRFHLL
Trigger: GAGCAAATGAAACCTGCTCAAAGAAACTTGTATCGA...ATAGTATACAGCACTTAAAAGCAGTGAACCAGATCCATATTGTGTAACATGGAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CAA 90 bp GGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCTATTTCGATACAAGTTTCTTaGAGCAGGTTTCATTTGCTC +
Preference number: 5 (lower is better)
Translates to: GCFLYSFQNCRSNSYTSISIQVS*SRFHLL
Trigger: GAGCAAATGAAACCTGCTCAAAGAAACTTGTATCGA...AATAGAAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS-3UTR CAA 90 bp AGTGAGGGTGTTTCCTCTATTCTTTTCAAAATTGTCGCAGCAATTCATACACTTCAATGGTTTCACAGTTaGGCTTTTCAAATTCCAGTA +
Preference number: 5 (lower is better)
Translates to: SEGVSSILFKIVAAIHTLQWFHS*AFQIPV
Trigger: TACTGGAATTTGAAAAGCCAAACTGTGAAACCATTG...AAGTGTATGAATTGCTGCGACAATTTTGAAAAGAATAGAGGAAACACCCTCACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000616085.1
ENST00000619231.4
CDS GCA 72 bp CCGCTCCAGCGCCAGCCTCACACCACACCCACTCCCTaGCTGCGCGCGGCCCGACACTGCCCTCTGCCGAGC +
Preference number: 6 (lower is better)
Translates to: PLQRQPHTTPTP*LRAARHCPLPS
Trigger: GCTCGGCAGAGGGCAGTGTCGGGCCGCGCGCAGGCAGGGAGTGGGTGTGGTGTGAGGCTGGCGCTGGAGCGG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000433993.5
ENST00000586353.5
CDS GCA 72 bp GTCCCGTCAACCGCGAGTCCCTTGCTCGCCCCCTGCTaGGGGGACTCGGCAGCGTCACCTGCCGGAAACACC +
Preference number: 6 (lower is better)
Translates to: VPSTASPLLAPC*GDSAASPAGNT
Trigger: GGTGTTTCCGGCAGGTGACGCTGCCGAGTCCCCGCAGCAGGGGGCGAGCAAGGGACTCGCGGTTGACGGGAC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000427117.5
ENST00000444991.5
ENST00000455427.6
ENST00000587130.5
CDS GCA 72 bp CGTGTCCCGTCAACCGCGAGTCCCTTGCTCGCCCCCTaGTGCGGGGACTCGGCAGCGTCACCTGCCGGAAAC +
Preference number: 6 (lower is better)
Translates to: RVPSTASPLLAP*CGDSAASPAGN
Trigger: GTTTCCGGCAGGTGACGCTGCCGAGTCCCCGCAGCAGGGGGCGAGCAAGGGACTCGCGGTTGACGGGACACG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000427117.5
ENST00000444991.5
ENST00000455427.6
ENST00000587130.5
ENST00000587857.5
CDS CCA 72 bp AGGCACAGCGGGCACAGATCGCCAAGCACCTGTCGCTaGGCCCACAATCCAGGTCCGGGGAGAACTGCCCGG +
Preference number: 6 (lower is better)
Translates to: RHSGHRSPSTCR*AHNPGPGRTAR
Trigger: CCGGGCAGTTCTCCCCGGACCTGGATTGTGGGCCCAGCGACAGGTGCTTGGCGATCTGTGCCCGCTGTGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000433993.5
ENST00000455817.5
ENST00000586353.5
ENST00000588596.1
CDS TCA 72 bp CCTCACCGCCCCCTTCGGCGTCCTAGCACTCAGGTCTaGACGAGTCCATCCCAACCCAGCGAGCTCCGCAGC +
Preference number: 6 (lower is better)
Translates to: PHRPLRRPSTQV*TSPSQPSELRS
Trigger: GCTGCGGAGCTCGCTGGGTTGGGATGGACTCGTTCAGACCTGAGTGCTAGGACGCCGAAGGGGGCGGTGAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000433993.5
ENST00000586353.5
ENST00000592567.1
CDS CCA 72 bp CATCGCACAGCCCTGACCTCCCCTAGCGGTGAAGCGTaGGCATGCAGCCCGCACATCTCCGAGAGCCACCTG +
Preference number: 6 (lower is better)
Translates to: HRTALTSPSGEA*ACSPHISESHL
Trigger: CAGGTGGCTCTCGGAGATGTGCGGGCTGCATGCCCACGCTTCACCGCTAGGGGAGGTCAGGGCTGTGCGATG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000433993.5
ENST00000586353.5
CDS CCA 72 bp CCTGAGCACTCCCCACTGCCGCTACTCGGGACACTCTaGGCCTTAGAGGATCCGTGTCCCGTCAACCGCGAG +
Preference number: 6 (lower is better)
Translates to: PEHSPLPLLGTL*ALEDPCPVNRE
Trigger: CTCGCGGTTGACGGGACACGGATCCTCTAAGGCCCAGAGTGTCCCGAGTAGCGGCAGTGGGGAGTGCTCAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000427117.5
ENST00000444991.5
ENST00000455427.6
ENST00000587130.5
ENST00000587857.5
CDS CCA 72 bp CTCTCCTCTTCTGGGTTCTCCCCTAGCGGTGAAGCGTaGGCATGCAGCCCGCACATCTCCGAGAGCCACCTG +
Preference number: 6 (lower is better)
Translates to: LSSSGFSPSGEA*ACSPHISESHL
Trigger: CAGGTGGCTCTCGGAGATGTGCGGGCTGCATGCCCACGCTTCACCGCTAGGGGAGAACCCAGAAGAGGAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000592567.1
CDS TCA 72 bp GAGATGCTGGGTGAAGGCGACCCGCAGATAGGTCTGTaGCAGACGCCTAAAGCGCCGAACCATCCCTCCGCG +
Preference number: 6 (lower is better)
Translates to: EMLGEGDPQIGL*QTPKAPNHPSA
Trigger: CGCGGAGGGATGGTTCGGCGCTTTAGGCGTCTGTCACAGACCTATCTGCGGGTCGCCTTCACCCAGCATCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000427117.5
ENST00000587130.5
CDS GCA 72 bp ACAGCCCTGACCTCCCCTAGCGGTGAAGCGTGGGCATaGAGCCCGCACATCTCCGAGAGCCACCTGTCTTTT +
Preference number: 6 (lower is better)
Translates to: TALTSPSGEAWA*SPHISESHLSF
Trigger: AAAAGACAGGTGGCTCTCGGAGATGTGCGGGCTGCATGCCCACGCTTCACCGCTAGGGGAGGTCAGGGCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000433993.5
ENST00000586353.5
CDS GCA 72 bp TCTTCTGGGTTCTCCCCTAGCGGTGAAGCGTGGGCATaGAGCCCGCACATCTCCGAGAGCCACCTGTCTTTT +
Preference number: 6 (lower is better)
Translates to: SSGFSPSGEAWA*SPHISESHLSF
Trigger: AAAAGACAGGTGGCTCTCGGAGATGTGCGGGCTGCATGCCCACGCTTCACCGCTAGGGGAGAACCCAGAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000592567.1
CDS TCA 72 bp TATGCTCTTTACAAGACACAGATCATTAGCGTACCCTaGGCACTCCCCACTGCCGCTACTCGGGACACTCTG +
Preference number: 6 (lower is better)
Translates to: YALYKTQIISVP*ALPTAATRDTL
Trigger: CAGAGTGTCCCGAGTAGCGGCAGTGGGGAGTGCTCAGGGTACGCTAATGATCTGTGTCTTGTAAAGAGCATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000333987.12
ENST00000415168.5
ENST00000427117.5
ENST00000444991.5
ENST00000455427.6
ENST00000587130.5
ENST00000587857.5
CDS CCA 72 bp CTGAAGATTGAGATGTCATTCAGACCCTGCCTGCTCTaGGCAGAAGGGTCAAGACAAGCTCCAGCAACTCCA +
Preference number: 6 (lower is better)
Translates to: LKIEMSFRPCLL*AEGSRQAPATP
Trigger: TGGAGTTGCTGGAGCTTGTCTTGACCCTTCTGCCCAGAGCAGGCAGGGTCTGAATGACATCTCAATCTTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000333987.12
ENST00000427117.5
ENST00000444991.5
ENST00000617745.4
ENST00000619231.4
CDS TCA 72 bp GTTGTATCCTCTTCTTCCTCGGAAAGGGCAGACTCTTaGGAACACCAAGCTTTCCTTTCCATCATGTGGCTC +
Preference number: 6 (lower is better)
Translates to: VVSSSSSERADS*EHQAFLSIMWL
Trigger: GAGCCACATGATGGAAAGGAAAGCTTGGTGTTCTCAAGAGTCTGCCCTTTCCGAGGAAGAAGAGGATACAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000333987.12
ENST00000427117.5
ENST00000444991.5
ENST00000617745.4
ENST00000619231.4
CDS CCA 72 bp GGCTGTGCACTGCATGGAAGTAAATGGTATTACAGCTaGTCTGAAATGTCCCTCCTGATGACCCTGTTGTCT +
Preference number: 6 (lower is better)
Translates to: GCALHGSKWYYS*SEMSLLMTLLS
Trigger: AGACAACAGGGTCATCAGGAGGGACATTTCAGACCAGCTGTAATACCATTTACTTCCATGCAGTGCACAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000433993.5
ENST00000444991.5
ENST00000455427.6
ENST00000455817.5
ENST00000591887.1
ENST00000617745.4
CDS CAA 72 bp GGTTGTATCCTCTTCTTCCTCGGAAAGGGCAGACTCTaGAGAACACCAAGCTTTCCTTTCCATCATGTGGCT +
Preference number: 6 (lower is better)
Translates to: GCILFFLGKGRL*RTPSFPFHHVA
Trigger: AGCCACATGATGGAAAGGAAAGCTTGGTGTTCTCAAGAGTCTGCCCTTTCCGAGGAAGAAGAGGATACAACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000333987.12
ENST00000427117.5
ENST00000444991.5
ENST00000617745.4
ENST00000619231.4
CDS TCA 72 bp CAAACGCTCCATTGTCACACAGCTATTGCTGATCACTaGAGATTGAGATGTCATTCAGACCCTGCCTGCTCT +
Preference number: 6 (lower is better)
Translates to: QTLHCHTAIADH*RLRCHSDPACS
Trigger: AGAGCAGGCAGGGTCTGAATGACATCTCAATCTTCAGTGATCAGCAATAGCTGTGTGACAATGGAGCGTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000333987.12
ENST00000427117.5
ENST00000444991.5
ENST00000617745.4
ENST00000619231.4
CDS TCA 72 bp TGTGGCTCAAACGCTCCATTGTCACACAGCTATTGCTaGTCACTGAAGATTGAGATGTCATTCAGACCCTGC +
Preference number: 6 (lower is better)
Translates to: CGSNAPLSHSYC*SLKIEMSFRPC
Trigger: GCAGGGTCTGAATGACATCTCAATCTTCAGTGATCAGCAATAGCTGTGTGACAATGGAGCGTTTGAGCCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000333987.12
ENST00000427117.5
ENST00000444991.5
ENST00000617745.4
ENST00000619231.4
CDS TCA 72 bp CTCCCCCATTTGAATTCCCTGAGGTTGACTTCGTTCTaGGCCACCAAAAAGGCCTCCCTACTTTCTTTACAT +
Preference number: 6 (lower is better)
Translates to: LPHLNSLRLTSF*ATKKASLLSLH
Trigger: ATGTAAAGAAAGTAGGGAGGCCTTTTTGGTGGCTCAGAACGAAGTCAACCTCAGGGAATTCAAATGGGGGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000591887.1
CDS TCA 72 bp GTTGTATCCTCTTCTTCCTCGGAAAGGGCAGACTCTTaGGAACACCAAGCTATTAAAATAACAGTCAAACAA +
Preference number: 6 (lower is better)
Translates to: VVSSSSSERADS*EHQAIKITVKQ
Trigger: TTGTTTGACTGTTATTTTAATAGCTTGGTGTTCTCAAGAGTCTGCCCTTTCCGAGGAAGAAGAGGATACAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000455427.6
ENST00000587130.5
ENST00000587857.5
CDS CAA 72 bp ATTTGGCTTAGTATCAGAAAGCCCTGTCTAATAGGGTaGTTATGTGGATTAAACAAGATCACATCTCCGCCA +
Preference number: 6 (lower is better)
Translates to: IWLSIRKPCLIG*LCGLNKITSPP
Trigger: TGGCGGAGATGTGATCTTGTTTAATCCACATAACAACCCTATTAGACAGGGCTTTCTGATACTAAGCCAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000588596.1
CDS TCA 72 bp TTTGCTTTCATGAAGCGTCTGATGCTTAATCAAGTCTaGTCCACTATTAAAGATTTTCCTACATTCTCCACA +
Preference number: 6 (lower is better)
Translates to: FAFMKRLMLNQV*STIKDFPTFST
Trigger: TGTGGAGAATGTAGGAAAATCTTTAATAGTGGATCAGACTTGATTAAGCATCAGACGCTTCATGAAAGCAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000433993.5
ENST00000444991.5
ENST00000455427.6
ENST00000591887.1
ENST00000617745.4