Pregenerated sensors for ZNF564 (Homo sapiens)
Ensembl gene IDs: ENSG00000249709Ensembl transcript IDs: ENST00000339282.12, ENST00000427105.1, ENST00000596193.1
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATTCCTATCAGGAAACTAATCCCAATTACAAGGCCTCCATCTTCATaGTGTCCTCCAATCCTAAAAACCACCAGAGACAGGGCCTCCAAA | + |
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Preference number: 1 (lower is better) Translates to: IPIRKLIPITRPPSS*CPPILKTTRDRASK Trigger: TTTGGAGGCCCTGTCTCTGGTGGTTTTTAGGATTGGAGGACATCATGAAGATGGAGGCCTTGTAATTGGGATTAGTTTCCTGATAGGAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| 3UTR-3UTR TCA 90 bp | GGTTTGGGAGGCTGGGAAGTCCAATATCAAGGCACTGGCATAGTCCATGTCTGGTTCCTATTCCAAAAGTaGGAAACAGGAGAAAGGGGT | + |
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Preference number: 2 (lower is better) Translates to: GLGGWEVQYQGTGIVHVWFLFQK*ETGERG Trigger: ACCCCTTTCTCCTGTTTCTCACTTTTGGAATAGGAA...CCAGACATGGACTATGCCAGTGCCTTGATATTGGACTTCCCAGCCTCCCAAACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| 3UTR-3UTR TCA 90 bp | TCATGGTTTGGGAGGCTGGGAAGTCCAATATCAAGGCACTGGCATAGTCCATGTAGGCCTCCATCTTCATaGTGTCCTCCAATCCTAAAA | + |
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Preference number: 2 (lower is better) Translates to: SWFGRLGSPISRHWHSPCRPPSS*CPPILK Trigger: TTTTAGGATTGGAGGACATCATGAAGATGGAGGCCT...ACATGGACTATGCCAGTGCCTTGATATTGGACTTCCCAGCCTCCCAAACCATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| 3UTR-3UTR CCA 90 bp | TCATGGTTTGGGAGGCTGGGAAGTCCAATATCAAGGCACTGGCATAGTCCATGTCACATCACTCAGATATaGATGAGACTCAATTCATGC | + |
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Preference number: 2 (lower is better) Translates to: SWFGRLGSPISRHWHSPCHITQI*MRLNSC Trigger: GCATGAATTGAGTCTCATCCATATCTGAGTGATGTG...ACATGGACTATGCCAGTGCCTTGATATTGGACTTCCCAGCCTCCCAAACCATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| 3UTR-3UTR CCA 90 bp | TACATTCCCAGTGATAGTGCACAATGTTCTCCAACATTCCACATCCTTGACAGTCATATGAATCTGAGGTaGCATACACTCAGCCAAAAC | + |
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Preference number: 2 (lower is better) Translates to: YIPSDSAQCSPTFHILDSHMNLR*HTLSQN Trigger: GTTTTGGCTGAGTGTATGCCACCTCAGATTCATATG...ACTGTCAAGGATGTGGAATGTTGGAGAACATTGTGCACTATCACTGGGAATGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| 3UTR-3UTR TCA 90 bp | TGTACATTCCCAGTGATAGTGCACAATGTTCTCCAACATTCCACATCCTTGACAAGACTCAATTCATGCTaGGGCAAAATTCTTCTTCAG | + |
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Preference number: 2 (lower is better) Translates to: CTFPVIVHNVLQHSTSLTRLNSC*GKILLQ Trigger: CTGAAGAAGAATTTTGCCTCAGCATGAATTGAGTCT...TGTCAAGGATGTGGAATGTTGGAGAACATTGTGCACTATCACTGGGAATGTACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| 3UTR-3UTR TCA 90 bp | ATTCATGCTGAGGCAAAATTCTTCTTCAGCTCCGAACCGGTGAAAACCAAACTAACCCAGAAAGCAAACTaGAGACTTTCCATATTCTTT | + |
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Preference number: 2 (lower is better) Translates to: IHAEAKFFFSSEPVKTKLTQKAN*RLSIFF Trigger: AAAGAATATGGAAAGTCTTCAGTTTGCTTTCTGGGT...TAGTTTGGTTTTCACCGGTTCGGAGCTGAAGAAGAATTTTGCCTCAGCATGAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| 3UTR CAA 90 bp | AAATTGGAAAGCTTAATTAATCAACAAACATTTATTTCTCATGGTTaGGGAGGCTGGGAAGTCCAATATCAAGGCACTGGCATAGTCCAT | + |
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Preference number: 2 (lower is better) Translates to: KLESLINQQTFISHG*GGWEVQYQGTGIVH Trigger: ATGGACTATGCCAGTGCCTTGATATTGGACTTCCCAGCCTCCCAAACCATGAGAAATAAATGTTTGTTGATTAATTAAGCTTTCCAATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| 3UTR CCA 72 bp | TGGTTTGGGAGGCTGGGAAGTCCAATATCAAGGCACTaGCATAGTCCATGTCTGGTAAGGGCCTGCTTCCCG | + |
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Preference number: 3 (lower is better) Translates to: WFGRLGSPISRH*HSPCLVRACFP Trigger: CGGGAAGCAGGCCCTTACCAGACATGGACTATGCCAGTGCCTTGATATTGGACTTCCCAGCCTCCCAAACCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| 3UTR CCA 72 bp | GGCACGGGGGTAAGGTTTCAACATATGAATCTGAGGTaGCATACACTCAGCCAAAACATTACACCTCTGGCC | + |
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Preference number: 3 (lower is better) Translates to: GTGVRFQHMNLR*HTLSQNITPLA Trigger: GGCCAGAGGTGTAATGTTTTGGCTGAGTGTATGCCACCTCAGATTCATATGTTGAAACCTTACCCCCGTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| 3UTR TCA 72 bp | AGGAAACTAATCCCAATTACAAGGCCTCCATCTTCATaGTGTCCTCCAATCCTAAAAACCACCAGAGACAGG | + |
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Preference number: 3 (lower is better) Translates to: RKLIPITRPPSS*CPPILKTTRDR Trigger: CCTGTCTCTGGTGGTTTTTAGGATTGGAGGACATCATGAAGATGGAGGCCTTGTAATTGGGATTAGTTTCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| 3UTR-3UTR CAA 90 bp | GCATTGTTACGTGCTTATTGGCCATCTGGGTATCTTCTTTGGAGAAATGTCTATTTTATTTCTCATGGTTaGGGAGGCTGGGAAGTCCAA | + |
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Preference number: 3 (lower is better) Translates to: ALLRAYWPSGYLLWRNVYFISHG*GGWEVQ Trigger: TTGGACTTCCCAGCCTCCCAAACCATGAGAAATAAA...ATAGACATTTCTCCAAAGAAGATACCCAGATGGCCAATAAGCACGTAACAATGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| 3UTR CCA 72 bp | AATCAACAAACATTTATTTCTCATGGTTTGGGAGGCTaGGAAGTCCAATATCAAGGCACTGGCATAGTCCAT | + |
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Preference number: 3 (lower is better) Translates to: NQQTFISHGLGG*EVQYQGTGIVH Trigger: ATGGACTATGCCAGTGCCTTGATATTGGACTTCCCAGCCTCCCAAACCATGAGAAATAAATGTTTGTTGATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| 3UTR CCA 72 bp | AAGATGTCGAGCATTGTTACGTGCTTATTGGCCATCTaGGTATCTTCTTTGGAGAAATGTCTATTCAAGTCC | + |
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Preference number: 3 (lower is better) Translates to: KMSSIVTCLLAI*VSSLEKCLFKS Trigger: GGACTTGAATAGACATTTCTCCAAAGAAGATACCCAGATGGCCAATAAGCACGTAACAATGCTCGACATCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| 3UTR TCA 72 bp | TCCCAAAGGCCTCAAAAGTCTCAGTTAATTCCAGCATaGAGCCTAATGTTTAAACTCAAACTCCAAAGTGTC | + |
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Preference number: 3 (lower is better) Translates to: SQRPQKSQLIPA*SLMFKLKLQSV Trigger: GACACTTTGGAGTTTGAGTTTAAACATTAGGCTTCATGCTGGAATTAACTGAGACTTTTGAGGCCTTTGGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| 3UTR TCA 72 bp | AAGTGTCATCTCAATATCACATCACTCAGATATGGATaGGACTCAATTCATGCTGAGGCAAAATTCTTCTTC | + |
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Preference number: 3 (lower is better) Translates to: KCHLNITSLRYG*DSIHAEAKFFF Trigger: GAAGAAGAATTTTGCCTCAGCATGAATTGAGTCTCATCCATATCTGAGTGATGTGATATTGAGATGACACTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR CCA 90 bp | CACTCAGATATGGATGAGACTCAATTCATGCTGAGGCAAAATTCTTCTTCAGCTCGCCAGACGCTGCGGTaGAGCCACCGGGGCCACTGG | + |
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Preference number: 4 (lower is better) Translates to: HSDMDETQFMLRQNSSSARQTLR*SHRGHW Trigger: CCAGTGGCCCCGGTGGCTCCACCGCAGCGTCTGGCG...AGCTGAAGAAGAATTTTGCCTCAGCATGAATTGAGTCTCATCCATATCTGAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR CCA 90 bp | CACTCAGATATGGATGAGACTCAATTCATGCTGAGGCAAAATTCTTCTTCAGCTAGCCACCGGGGCCACTaGAGAAGCGGAGACCGGAAC | + |
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Preference number: 4 (lower is better) Translates to: HSDMDETQFMLRQNSSSASHRGH*RSGDRN Trigger: GTTCCGGTCTCCGCTTCTCCAGTGGCCCCGGTGGCT...AGCTGAAGAAGAATTTTGCCTCAGCATGAATTGAGTCTCATCCATATCTGAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR TCA 90 bp | GGTTTGGGAGGCTGGGAAGTCCAATATCAAGGCACTGGCATAGTCCATGTCTGGAGGCCTCCATCTTCATaGTGTCCTCCAATCCTAAAA | + |
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Preference number: 4 (lower is better) Translates to: GLGGWEVQYQGTGIVHVWRPPSS*CPPILK Trigger: TTTTAGGATTGGAGGACATCATGAAGATGGAGGCCT...CCAGACATGGACTATGCCAGTGCCTTGATATTGGACTTCCCAGCCTCCCAAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR GCA 90 bp | GTAAAATATATTCATCTCATCCCAAAGGCCTCAAAAGTCTCAGTTAATTCCAGCGCTCTCTCCGGCCTGTaGAGGTCCCAGCGCGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: VKYIHLIPKASKVSVNSSALSGL*RSQRAR Trigger: TCTGGCGCGCTGGGACCTGCACAGGCCGGAGAGAGC...GCTGGAATTAACTGAGACTTTTGAGGCCTTTGGGATGAGATGAATATATTTTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR TCA 90 bp | GGTTTGGGAGGCTGGGAAGTCCAATATCAAGGCACTGGCATAGTCCATGTCTGGAGTCCCTCTTCCATATaGTTTCTTAAAATTCTCCCC | + |
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Preference number: 4 (lower is better) Translates to: GLGGWEVQYQGTGIVHVWSPSSI*FLKILP Trigger: GGGGAGAATTTTAAGAAATCATATGGAAGAGGGACT...CCAGACATGGACTATGCCAGTGCCTTGATATTGGACTTCCCAGCCTCCCAAACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR TCA 90 bp | GGGGTGAGCTCCCAAACAAGTCTGAAACCCAGAAAGCAAACTGAAGACTTTCCAGCTCCCAAACAAGTCTaGAACCCAGAAAGCAAACTG | + |
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Preference number: 4 (lower is better) Translates to: GVSSQTSLKPRKQTEDFPAPKQV*NPESKL Trigger: CAGTTTGCTTTCTGGGTTTCAGACTTGTTTGGGAGC...TGGAAAGTCTTCAGTTTGCTTTCTGGGTTTCAGACTTGTTTGGGAGCTCACCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR CCA 90 bp | AGACAGGCACAGGATAGAGATTCCTATTCCAAAAGTGAGAAACAGGAGAAAGGGCCAATATCAAGGCACTaGCATAGTCCATGTCTGGTA | + |
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Preference number: 4 (lower is better) Translates to: RQAQDRDSYSKSEKQEKGPISRH*HSPCLV Trigger: TACCAGACATGGACTATGCCAGTGCCTTGATATTGG...CCCTTTCTCCTGTTTCTCACTTTTGGAATAGGAATCTCTATCCTGTGCCTGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR TCA 90 bp | GCATTGTTACGTGCTTATTGGCCATCTGGGTATCTTCTTTGGAGAAATGTCTATGGGATGAATGATGCATaGAGACTTTCCCACACAAAC | + |
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Preference number: 4 (lower is better) Translates to: ALLRAYWPSGYLLWRNVYGMNDA*RLSHTN Trigger: GTTTGTGTGGGAAAGTCTTCATGCATCATTCATCCC...ATAGACATTTCTCCAAAGAAGATACCCAGATGGCCAATAAGCACGTAACAATGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR TCA 90 bp | TGTACATTCCCAGTGATAGTGCACAATGTTCTCCAACATTCCACATCCTTGACATTCCTATTCCAAAAGTaGGAAACAGGAGAAAGGGGT | + |
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Preference number: 4 (lower is better) Translates to: CTFPVIVHNVLQHSTSLTFLFQK*ETGERG Trigger: ACCCCTTTCTCCTGTTTCTCACTTTTGGAATAGGAA...TGTCAAGGATGTGGAATGTTGGAGAACATTGTGCACTATCACTGGGAATGTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR CCA 90 bp | CACTGTACATTCCCAGTGATAGTGCACAATGTTCTCCAACATTCCACATCCTTGCACATCACTCAGATATaGATGAGACTCAATTCATGC | + |
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Preference number: 4 (lower is better) Translates to: HCTFPVIVHNVLQHSTSLHITQI*MRLNSC Trigger: GCATGAATTGAGTCTCATCCATATCTGAGTGATGTG...CAAGGATGTGGAATGTTGGAGAACATTGTGCACTATCACTGGGAATGTACAGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR CCA 90 bp | AGACAGGCACAGGATAGAGATTCCTATTCCAAAAGTGAGAAACAGGAGAAAGGGTTGTTACGTGCTTATTaGCCATCTGGGTATCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: RQAQDRDSYSKSEKQEKGLLRAY*PSGYLL Trigger: AAGAAGATACCCAGATGGCCAATAAGCACGTAACAA...CCCTTTCTCCTGTTTCTCACTTTTGGAATAGGAATCTCTATCCTGTGCCTGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR TCA 90 bp | TACATTCCCAGTGATAGTGCACAATGTTCTCCAACATTCCACATCCTTGACAGTAGACTCAATTCATGCTaGGGCAAAATTCTTCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: YIPSDSAQCSPTFHILDSRLNSC*GKILLQ Trigger: CTGAAGAAGAATTTTGCCTCAGCATGAATTGAGTCT...ACTGTCAAGGATGTGGAATGTTGGAGAACATTGTGCACTATCACTGGGAATGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR GCA 90 bp | CACTCAGATATGGATGAGACTCAATTCATGCTGAGGCAAAATTCTTCTTCAGCTTTTAATCTGGGGATCTaGCATACTGTTTTCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: HSDMDETQFMLRQNSSSAFNLGI*HTVFSR Trigger: CCTGCTGAAAACAGTATGGCAGATCCCCAGATTAAA...AGCTGAAGAAGAATTTTGCCTCAGCATGAATTGAGTCTCATCCATATCTGAGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR CCA 90 bp | ACTAATCCCAATTACAAGGCCTCCATCTTCATGATGTCCTCCAATCCTAAAAACCATATGAATCTGAGGTaGCATACACTCAGCCAAAAC | + |
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Preference number: 4 (lower is better) Translates to: TNPNYKASIFMMSSNPKNHMNLR*HTLSQN Trigger: GTTTTGGCTGAGTGTATGCCACCTCAGATTCATATG...GTTTTTAGGATTGGAGGACATCATGAAGATGGAGGCCTTGTAATTGGGATTAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR TCA 90 bp | TGTACATTCCCAGTGATAGTGCACAATGTTCTCCAACATTCCACATCCTTGACAACCCAGAAAGCAAACTaGAGACTTTCCATATTCTTT | + |
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Preference number: 4 (lower is better) Translates to: CTFPVIVHNVLQHSTSLTTQKAN*RLSIFF Trigger: AAAGAATATGGAAAGTCTTCAGTTTGCTTTCTGGGT...TGTCAAGGATGTGGAATGTTGGAGAACATTGTGCACTATCACTGGGAATGTACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR CCA 90 bp | GCATTGTTACGTGCTTATTGGCCATCTGGGTATCTTCTTTGGAGAAATGTCTATAACATTTATTTCTCATaGTTTGGGAGGCTGGGAAGT | + |
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Preference number: 4 (lower is better) Translates to: ALLRAYWPSGYLLWRNVYNIYFS*FGRLGS Trigger: ACTTCCCAGCCTCCCAAACCATGAGAAATAAATGTT...ATAGACATTTCTCCAAAGAAGATACCCAGATGGCCAATAAGCACGTAACAATGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR CCA 90 bp | GCATTGTTACGTGCTTATTGGCCATCTGGGTATCTTCTTTGGAGAAATGTCTATTGCTTATTGGCCATCTaGGTATCTTCTTTGGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: ALLRAYWPSGYLLWRNVYCLLAI*VSSLEK Trigger: TTTCTCCAAAGAAGATACCCAGATGGCCAATAAGCA...ATAGACATTTCTCCAAAGAAGATACCCAGATGGCCAATAAGCACGTAACAATGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| 3UTR CAA 72 bp | AGCTTAATTAATCAACAAACATTTATTTCTCATGGTTaGGGAGGCTGGGAAGTCCAATATCAAGGCACTGGC | + |
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Preference number: 4 (lower is better) Translates to: SLINQQTFISHG*GGWEVQYQGTG Trigger: GCCAGTGCCTTGATATTGGACTTCCCAGCCTCCCAAACCATGAGAAATAAATGTTTGTTGATTAATTAAGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR TCA 90 bp | CACTCAGATATGGATGAGACTCAATTCATGCTGAGGCAAAATTCTTCTTCAGCTAACATTCCACATCCTTaGCAGTATTTCTTGTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: HSDMDETQFMLRQNSSSANIPHP*QYFLFS Trigger: GGAAAACAAGAAATACTGTCAAGGATGTGGAATGTT...AGCTGAAGAAGAATTTTGCCTCAGCATGAATTGAGTCTCATCCATATCTGAGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR CCA 90 bp | ACTAATCCCAATTACAAGGCCTCCATCTTCATGATGTCCTCCAATCCTAAAAACGATTGTGTCTTAGCTTaGGTTGCTAAAACAAAATAC | + |
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Preference number: 4 (lower is better) Translates to: TNPNYKASIFMMSSNPKNDCVLA*VAKTKY Trigger: GTATTTTGTTTTAGCAACCCAAGCTAAGACACAATC...GTTTTTAGGATTGGAGGACATCATGAAGATGGAGGCCTTGTAATTGGGATTAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS CCA 90 bp | CAGGTCCCAGCGCGCCAGACGCTGCGGTGGAGCCACCGGGGCCACTaGAGAAGCGGAGACCGGAACCCAAACGCAGCGGACACGAAACAG | + |
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Preference number: 5 (lower is better) Translates to: QVPARQTLRWSHRGH*RSGDRNPNAADTKQ Trigger: CTGTTTCGTGTCCGCTGCGTTTGGGTTCCGGTCTCCGCTTCTCCAGTGGCCCCGGTGGCTCCACCGCAGCGTCTGGCGCGCTGGGACCTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000339282.12 ENST00000596193.1 |
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| CDS-3UTR CAA 90 bp | TGTACATTCCCAGTGATAGTGCACAATGTTCTCCAACATTCCACATCCTTGACATTTATTTCTCATGGTTaGGGAGGCTGGGAAGTCCAA | + |
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Preference number: 5 (lower is better) Translates to: CTFPVIVHNVLQHSTSLTFISHG*GGWEVQ Trigger: TTGGACTTCCCAGCCTCCCAAACCATGAGAAATAAA...TGTCAAGGATGTGGAATGTTGGAGAACATTGTGCACTATCACTGGGAATGTACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR CAA 90 bp | GGGGTGAGCTCCCAAACAAGTCTGAAACCCAGAAAGCAAACTGAAGACTTTCCAATCTGGGTATCTTCTTaGGAGAAATGTCTATTCAAG | + |
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Preference number: 5 (lower is better) Translates to: GVSSQTSLKPRKQTEDFPIWVSS*EKCLFK Trigger: CTTGAATAGACATTTCTCCAAAGAAGATACCCAGAT...TGGAAAGTCTTCAGTTTGCTTTCTGGGTTTCAGACTTGTTTGGGAGCTCACCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR CAA 90 bp | ACTAATCCCAATTACAAGGCCTCCATCTTCATGATGTCCTCCAATCCTAAAAACATGTCTTCGAAAGGATaGACAAGAACTGAAGGCTTT | + |
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Preference number: 5 (lower is better) Translates to: TNPNYKASIFMMSSNPKNMSSKG*TRTEGF Trigger: AAAGCCTTCAGTTCTTGTCAATCCTTTCGAAGACAT...GTTTTTAGGATTGGAGGACATCATGAAGATGGAGGCCTTGTAATTGGGATTAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR CAA 90 bp | CACTCAGATATGGATGAGACTCAATTCATGCTGAGGCAAAATTCTTCTTCAGCTCATTTTAAAATTGGATaGTGTCTTAGCTTGGGTTGC | + |
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Preference number: 5 (lower is better) Translates to: HSDMDETQFMLRQNSSSAHFKIG*CLSLGC Trigger: GCAACCCAAGCTAAGACACAATCCAATTTTAAAATG...AGCTGAAGAAGAATTTTGCCTCAGCATGAATTGAGTCTCATCCATATCTGAGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS-3UTR CAA 90 bp | CACTCAGATATGGATGAGACTCAATTCATGCTGAGGCAAAATTCTTCTTCAGCTCAACATTCCACATCCTaGACAGTATTTCTTGTTTTC | + |
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Preference number: 5 (lower is better) Translates to: HSDMDETQFMLRQNSSSAQHSTS*TVFLVF Trigger: GAAAACAAGAAATACTGTCAAGGATGTGGAATGTTG...AGCTGAAGAAGAATTTTGCCTCAGCATGAATTGAGTCTCATCCATATCTGAGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000339282.12 |
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| CDS CCA 72 bp | GCGCGCCAGACGCTGCGGTGGAGCCACCGGGGCCACTaGAGAAGCGGAGACCGGAACCCAAACGCAGCGGAC | + |
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Preference number: 6 (lower is better) Translates to: ARQTLRWSHRGH*RSGDRNPNAAD Trigger: GTCCGCTGCGTTTGGGTTCCGGTCTCCGCTTCTCCAGTGGCCCCGGTGGCTCCACCGCAGCGTCTGGCGCGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000339282.12 ENST00000427105.1 ENST00000596193.1 |
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| CDS GCA 72 bp | CACGAAACAGGAAGACCCCGCGGAGTTGTTGAACATTaGCCCTGTCCCCCTTGCAGAGTTCCTGATTGGATG | + |
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Preference number: 6 (lower is better) Translates to: HETGRPRGVVEH*PCPPCRVPDWM Trigger: CATCCAATCAGGAACTCTGCAAGGGGGACAGGGGCAATGTTCAACAACTCCGCGGGGTCTTCCTGTTTCGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000596193.1 |
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