Pregenerated sensors for ZNF479 (Homo sapiens)

Ensembl gene IDs: ENSG00000185177

Ensembl transcript IDs: ENST00000331162.8

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TCAGGGGAAATTGTAATGTATCTCTGGACCAATCATCAAAGGAAGTaGCTCTCCTTTTCTGCCTGGGTCCTGCCCTTAGTTGGGATTGTG	+
Preference number: 5 (lower is better) Translates to: SGEIVMYLWTNHQRK*LSFSAWVLPLVGIV Trigger: CACAATCCCAACTAAGGGCAGGACCCAGGCAGAAAAGGAGAGTCACTTCCTTTGATGATTGGTCCAGAGATACATTACAATTTCCCCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000331162.8
CDS TCA 90 bp	CTGCAGATACCTGGGCCATGCAGTATATTCAGTTCCTCTTCTGCATaGGAGCTGTCCTCAGGGGAAATTGTAATGTATCTCTGGACCAAT	+
Preference number: 5 (lower is better) Translates to: LQIPGPCSIFSSSSA*ELSSGEIVMYLWTN Trigger: ATTGGTCCAGAGATACATTACAATTTCCCCTGAGGACAGCTCTCATGCAGAAGAGGAACTGAATATACTGCATGGCCCAGGTATCTGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331162.8
CDS GCA 90 bp	AAATCTGCAGATACCTGGGCCATGCAGTATATTCAGTTCCTCTTCTaGATGAGAGCTGTCCTCAGGGGAAATTGTAATGTATCTCTGGAC	+
Preference number: 5 (lower is better) Translates to: KSADTWAMQYIQFLF*MRAVLRGNCNVSLD Trigger: GTCCAGAGATACATTACAATTTCCCCTGAGGACAGCTCTCATGCAGAAGAGGAACTGAATATACTGCATGGCCCAGGTATCTGCAGATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331162.8
CDS TCA 72 bp	CCTGGGCCATGCAGTATATTCAGTTCCTCTTCTGCATaGGAGCTGTCCTCAGGGGAAATTGTAATGTATCTC	+
Preference number: 6 (lower is better) Translates to: PGPCSIFSSSSA*ELSSGEIVMYL Trigger: GAGATACATTACAATTTCCCCTGAGGACAGCTCTCATGCAGAAGAGGAACTGAATATACTGCATGGCCCAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331162.8
CDS GCA 72 bp	GATACCTGGGCCATGCAGTATATTCAGTTCCTCTTCTaGATGAGAGCTGTCCTCAGGGGAAATTGTAATGTA	+
Preference number: 6 (lower is better) Translates to: DTWAMQYIQFLF*MRAVLRGNCNV Trigger: TACATTACAATTTCCCCTGAGGACAGCTCTCATGCAGAAGAGGAACTGAATATACTGCATGGCCCAGGTATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331162.8
CDS TCA 72 bp	ATTGTAATGTATCTCTGGACCAATCATCAAAGGAAGTaGCTCTCCTTTTCTGCCTGGGTCCTGCCCTTAGTT	+
Preference number: 6 (lower is better) Translates to: IVMYLWTNHQRK*LSFSAWVLPLV Trigger: AACTAAGGGCAGGACCCAGGCAGAAAAGGAGAGTCACTTCCTTTGATGATTGGTCCAGAGATACATTACAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331162.8

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu