Pregenerated sensors for ZNF440 (Homo sapiens)
Ensembl gene IDs: ENSG00000171295Ensembl transcript IDs: ENST00000304060.10, ENST00000587795.1, ENST00000588954.5
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 72 bp | AGCCACCATGCCCAGCCAAGGCCAAGTCTTTTATTGTaGGAGAGACACGTGTCACATACCAGGCATATGAGA | + |
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Preference number: 4 (lower is better) Translates to: SHHAQPRPSLLL*ERHVSHTRHMR Trigger: TCTCATATGCCTGGTATGTGACACGTGTCTCTCCAACAATAAAAGACTTGGCCTTGGCTGGGCATGGTGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000304060.10 |
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| CDS TCA 90 bp | CCCTGCAATTCCTGTCTCTCTGAAATGAATAAAACCAAACTGTCTTaGGCTGCCTCGGGACCACTTACTCCAGGCTGCTTGGGGTTGTGT | + |
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Preference number: 5 (lower is better) Translates to: PCNSCLSEMNKTKLS*AASGPLTPGCLGLC Trigger: ACACAACCCCAAGCAGCCTGGAGTAAGTGGTCCCGAGGCAGCTCAAGACAGTTTGGTTTTATTCATTTCAGAGAGACAGGAATTGCAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000587795.1 |
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| CDS CCA 90 bp | TCATGTAAAAACAGACATTATCTGACTGGAAAAACAGACTCCTTGTaGCAACAAGATACCAAATTACAAACAAGACCTAAGGCCACGCAA | + |
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Preference number: 5 (lower is better) Translates to: SCKNRHYLTGKTDSL*QQDTKLQTRPKATQ Trigger: TTGCGTGGCCTTAGGTCTTGTTTGTAATTTGGTATCTTGTTGCCACAAGGAGTCTGTTTTTCCAGTCAGATAATGTCTGTTTTTACATGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000587795.1 |
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| CDS CAA 72 bp | CACAACACAAAAAGCATGATTCCAGGCTGCTTGGGGTaGTGTTTCCCTCGGCCAACGGCTCTCCTATTCGGC | + |
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Preference number: 6 (lower is better) Translates to: HNTKSMIPGCLG*CFPRPTALLFG Trigger: GCCGAATAGGAGAGCCGTTGGCCGAGGGAAACACAACCCCAAGCAGCCTGGAATCATGCTTTTTGTGTTGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000588954.5 |
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| CDS GCA 72 bp | GATTTCACACACAACACAAAAAGCATGATTCCAGGCTaGTTGGGGTTGTGTTTCCCTCGGCCAACGGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: DFTHNTKSMIPG*LGLCFPRPTAL Trigger: GAGAGCCGTTGGCCGAGGGAAACACAACCCCAAGCAGCCTGGAATCATGCTTTTTGTGTTGTGTGTGAAATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000588954.5 |
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| CDS CAA 72 bp | TTCACACACAACACAAAAAGCATGATTCCAGGCTGCTaGGGGTTGTGTTTCCCTCGGCCAACGGCTCTCCTA | + |
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Preference number: 6 (lower is better) Translates to: FTHNTKSMIPGC*GLCFPRPTALL Trigger: TAGGAGAGCCGTTGGCCGAGGGAAACACAACCCCAAGCAGCCTGGAATCATGCTTTTTGTGTTGTGTGTGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000588954.5 |
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| CDS CCA 72 bp | AAAACCCTGAAAATTGAGTGCCTCTGTATGACAGGATaGGAGGTGAGACAGGTCTCCTTATACCCTCTCCCT | + |
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Preference number: 6 (lower is better) Translates to: KTLKIECLCMTG*EVRQVSLYPLP Trigger: AGGGAGAGGGTATAAGGAGACCTGTCTCACCTCCCATCCTGTCATACAGAGGCACTCAATTTTCAGGGTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000587795.1 |
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| CDS TCA 72 bp | CCCTTTCTGCCAATGGAACTTACACCTTCCAGGCACTaGTTCATGATTTTCCCTGCAATTCCTGTCTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: PFLPMELTPSRH*FMIFPAIPVSL Trigger: CAGAGAGACAGGAATTGCAGGGAAAATCATGAATCAGTGCCTGGAAGGTGTAAGTTCCATTGGCAGAAAGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000587795.1 |
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| CDS CAA 90 bp | CCTAAGCCATCATGCTGGCCCAGAGTAGCTTTCAATAAACTCTCTTaGCACTGTACTTTCCGACTCGTCTTGAATTCCTTCCTGTATGAG | + |
|
Preference number: 6 (lower is better) Translates to: PKPSCWPRVAFNKLS*HCTFRLVLNSFLYE Trigger: CTCATACAGGAAGGAATTCAAGACGAGTCGGAAAGTACAGTGCAAAGAGAGTTTATTGAAAGCTACTCTGGGCCAGCATGATGGCTTAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000587795.1 |
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| CDS TCA 72 bp | TTTGGCAATAAGATTTCACACACAACACAAAAAGCATaGTTCCAGGCTGCTTGGGGTTGTGTTTCCCTCGGC | + |
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Preference number: 6 (lower is better) Translates to: FGNKISHTTQKA*FQAAWGCVSLG Trigger: GCCGAGGGAAACACAACCCCAAGCAGCCTGGAATCATGCTTTTTGTGTTGTGTGTGAAATCTTATTGCCAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000588954.5 |
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| CDS CAA 90 bp | GGCTCTCCTATTCGGCTCCTAATAAACTTCTTTATTTTACATAGCTaGGCTTTTTCCGTTGACAAACCACAAGCCAGGACTGGGTGTTTC | + |
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Preference number: 6 (lower is better) Translates to: GSPIRLLINFFILHS*AFSVDKPQARTGCF Trigger: GAAACACCCAGTCCTGGCTTGTGGTTTGTCAACGGAAAAAGCCAAGCTATGTAAAATAAAGAAGTTTATTAGGAGCCGAATAGGAGAGCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000588954.5 |
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| CDS CCA 72 bp | TTAACTTCCAATTTTGGAGTACTGAGTCCATTTCTCTaGAGTCTGTGTTTTTCCCAAATGGGCCATTGCTAT | + |
|
Preference number: 6 (lower is better) Translates to: LTSNFGVLSPFL*SLCFSQMGHCY Trigger: ATAGCAATGGCCCATTTGGGAAAAACACAGACTCCAGAGAAATGGACTCAGTACTCCAAAATTGGAAGTTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000587795.1 |
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| CDS TCA 72 bp | CAACTGACGCACATTCATGTAAAAACAGACATTATCTaGCTGGAAAAACAGACTCCTTGTGGCAACAAGATA | + |
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Preference number: 6 (lower is better) Translates to: QLTHIHVKTDII*LEKQTPCGNKI Trigger: TATCTTGTTGCCACAAGGAGTCTGTTTTTCCAGTCAGATAATGTCTGTTTTTACATGAATGTGCGTCAGTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000587795.1 |
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| CDS GCA 72 bp | ACTTACACCTTCCAGGCACTGATTCATGATTTTCCCTaGAATTCCTGTCTCTCTGAAATGAATAAAACCAAA | + |
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Preference number: 6 (lower is better) Translates to: TYTFQALIHDFP*NSCLSEMNKTK Trigger: TTTGGTTTTATTCATTTCAGAGAGACAGGAATTGCAGGGAAAATCATGAATCAGTGCCTGGAAGGTGTAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000587795.1 |
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| CDS CAA 72 bp | ATTCGGCTCCTAATAAACTTCTTTATTTTACATAGCTaGGCTTTTTCCGTTGACAAACCACAAGCCAGGACT | + |
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Preference number: 6 (lower is better) Translates to: IRLLINFFILHS*AFSVDKPQART Trigger: AGTCCTGGCTTGTGGTTTGTCAACGGAAAAAGCCAAGCTATGTAAAATAAAGAAGTTTATTAGGAGCCGAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000588954.5 |
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| CDS TCA 72 bp | GGGTCAATTTCACACTTGTCAAAACCAAGACGACCTTaGTTTGGCAATAAGATTTCACACACAACACAAAAA | + |
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Preference number: 6 (lower is better) Translates to: GSISHLSKPRRP*FGNKISHTTQK Trigger: TTTTTGTGTTGTGTGTGAAATCTTATTGCCAAATCAAGGTCGTCTTGGTTTTGACAAGTGTGAAATTGACCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588954.5 |
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| CDS CCA 72 bp | AACAGACATTATCTGACTGGAAAAACAGACTCCTTGTaGCAACAAGATACCAAATTACAAACAAGACCTAAG | + |
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Preference number: 6 (lower is better) Translates to: NRHYLTGKTDSL*QQDTKLQTRPK Trigger: CTTAGGTCTTGTTTGTAATTTGGTATCTTGTTGCCACAAGGAGTCTGTTTTTCCAGTCAGATAATGTCTGTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000587795.1 |
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| CDS CAA 90 bp | CCAAATGGGCCATTGCTATCTTTTTGCTTGAATAAACTCTTCCAGTaGAAATCTGAAACTTTCGATTATTTCGGGTTGACAAGTCCAAAT | + |
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Preference number: 6 (lower is better) Translates to: PNGPLLSFCLNKLFQ*KSETFDYFGLTSPN Trigger: ATTTGGACTTGTCAACCCGAAATAATCGAAAGTTTCAGATTTCAACTGGAAGAGTTTATTCAAGCAAAAAGATAGCAATGGCCCATTTGG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000587795.1 |
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| CDS CAA 72 bp | AAAAACAGACATTATCTGACTGGAAAAACAGACTCCTaGTGGCAACAAGATACCAAATTACAAACAAGACCT | + |
|
Preference number: 6 (lower is better) Translates to: KNRHYLTGKTDS*WQQDTKLQTRP Trigger: AGGTCTTGTTTGTAATTTGGTATCTTGTTGCCACAAGGAGTCTGTTTTTCCAGTCAGATAATGTCTGTTTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000587795.1 |
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| CDS CAA 72 bp | CAATTTCACACTTGTCAAAACCAAGACGACCTTGATTaGGCAATAAGATTTCACACACAACACAAAAAGCAT | + |
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Preference number: 6 (lower is better) Translates to: QFHTCQNQDDLD*AIRFHTQHKKH Trigger: ATGCTTTTTGTGTTGTGTGTGAAATCTTATTGCCAAATCAAGGTCGTCTTGGTTTTGACAAGTGTGAAATTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000588954.5 |
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| CDS CAA 72 bp | CCATTGCTATCTTTTTGCTTGAATAAACTCTTCCAGTaGAAATCTGAAACTTTCGATTATTTCGGGTTGACA | + |
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Preference number: 6 (lower is better) Translates to: PLLSFCLNKLFQ*KSETFDYFGLT Trigger: TGTCAACCCGAAATAATCGAAAGTTTCAGATTTCAACTGGAAGAGTTTATTCAAGCAAAAAGATAGCAATGG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000587795.1 |
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