RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZNF300 (Homo sapiens)

Ensembl gene IDs: ENSG00000145908

Ensembl transcript IDs: ENST00000274599.10, ENST00000274599.9, ENST00000394226.2, ENST00000418587.6, ENST00000427179.5, ENST00000446148.6

Found 182 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTAGGAGAAGTATGTTTGCCTAAAGTCACACAATCTGTGAGGCACTaGGCCAGGATTAAACCCAAGGCCATCTGGCCTCAGTGCCAATGT +
Preference number: 1 (lower is better)
Translates to: LGEVCLPKVTQSVRH*ARIKPKAIWPQCQC
Trigger: ACATTGGCACTGAGGCCAGATGGCCTTGGGTTTAATCCTGGCTCAGTGCCTCACAGATTGTGTGACTTTAGGCAAACATACTTCTCCTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR GCA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATaGAGGTCAACTTATATGCTTGAGATGGGAAAATGCATACAGATC +
Preference number: 1 (lower is better)
Translates to: GRPAQNASISRSFQR*RSTYMLEMGKCIQI
Trigger: GATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR GCA 90 bp TCCAAGTTCCCAGTTGGGAAGAGTAAAAGGGAGACCTGCTCAAAATaGATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATAT +
Preference number: 1 (lower is better)
Translates to: SKFPVGKSKRETCSK*INLKVLPEMQVNLY
Trigger: ATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR GCA 90 bp ATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATaGTTGAGATGGGAAAATGCATACAGATCAACTTTACTGAATCTG +
Preference number: 1 (lower is better)
Translates to: MHQSQGPSRDAGQLI*LRWENAYRSTLLNL
Trigger: CAGATTCAGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR CCA 90 bp TCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATaGGAAAATGCATACAGATCAACTTTACTGAATCTGATCAACCTA +
Preference number: 1 (lower is better)
Translates to: SQGPSRDAGQLICLR*ENAYRSTLLNLINL
Trigger: TAGGTTGATCAGATTCAGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR GCA 90 bp TCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAAATaGATACAGATCAACTTTACTGAATCTGATCAACCTATCATTCCA +
Preference number: 1 (lower is better)
Translates to: SFQRCRSTYMLEMGK*IQINFTESDQPIIP
Trigger: TGGAATGATAGGTTGATCAGATTCAGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR TCA 90 bp AGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTCAATCTGTGAGGCACTaGGCCAGGATTAAACCCAAG +
Preference number: 2 (lower is better)
Translates to: RPAQNASISRSFQRCRSTQSVRH*ARIKPK
Trigger: CTTGGGTTTAATCCTGGCTCAGTGCCTCACAGATTG...AGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR TCA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCATGTCCCCAAAATACATaGCTGGGAGTTGTGAAGGTT +
Preference number: 2 (lower is better)
Translates to: GRPAQNASISRSFQRCRSCPQNT*LGVVKV
Trigger: AACCTTCACAACTCCCAGTCATGTATTTTGGGGACA...TGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000427179.5
3UTR-3UTR TCA 90 bp AAGCAGAGTGTCCAGAGGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCAATCTGTGAGGCACTaGGCCAGGATTAAACCCAAG +
Preference number: 2 (lower is better)
Translates to: KQSVQREKQAQTWFLHISQSVRH*ARIKPK
Trigger: CTTGGGTTTAATCCTGGCTCAGTGCCTCACAGATTG...ACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR TCA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCACAGAAGACAGTAAAATaGGCCACTTATAGGGATAGG +
Preference number: 2 (lower is better)
Translates to: GRPAQNASISRSFQRCRSQKTVK*ATYRDR
Trigger: CCTATCCCTATAAGTGGCTCATTTTACTGTCTTCTG...TGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR TCA 90 bp AAGCAGAGTGTCCAGAGGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTAAGTCACACAATCTGTaGGGCACTGAGCCAGGATTA +
Preference number: 2 (lower is better)
Translates to: KQSVQREKQAQTWFLHISKSHNL*GTEPGL
Trigger: TAATCCTGGCTCAGTGCCTCACAGATTGTGTGACTT...ACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR TCA 90 bp CAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAAAGTCACACAATCTGTaGGGCACTGAGCCAGGATTA +
Preference number: 2 (lower is better)
Translates to: QSQGPSRDAGQLICLRWEKSHNL*GTEPGL
Trigger: TAATCCTGGCTCAGTGCCTCACAGATTGTGTGACTT...TTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR TCA 90 bp CAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAACATGACTGGGAGTTGTaGAGGTTACTCTTCCTGTCT +
Preference number: 2 (lower is better)
Translates to: QSQGPSRDAGQLICLRWEHDWEL*RLLFLS
Trigger: AGACAGGAAGAGTAACCTTCACAACTCCCAGTCATG...TTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427179.5
3UTR-3UTR TCA 90 bp AGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTCCTTTCAGTATCTTATaGTGGAAGGAAACTGTCCCC +
Preference number: 2 (lower is better)
Translates to: RPAQNASISRSFQRCRSTPFSIL*WKETVP
Trigger: GGGGACAGTTTCCTTCCATCATAAGATACTGAAAGG...AGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427179.5
3UTR-3UTR CCA 90 bp AACCCAAGGCCATCTGGCCTCAGTGCCAATGTTTTTCAGCTCCAAGTTCCCAGTCTTATATGCTTGAGATaGGAAAATGCATACAGATCA +
Preference number: 2 (lower is better)
Translates to: NPRPSGLSANVFQLQVPSLICLR*ENAYRS
Trigger: TGATCTGTATGCATTTTCCCATCTCAAGCATATAAG...ACTGGGAACTTGGAGCTGAAAAACATTGGCACTGAGGCCAGATGGCCTTGGGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR TCA 90 bp AGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTGCTGTGCTGATCACTaGGTTCATAACTTTAAAAGC +
Preference number: 2 (lower is better)
Translates to: RPAQNASISRSFQRCRSTCCADH*VHNFKS
Trigger: GCTTTTAAAGTTATGAACTCAGTGATCAGCACAGCA...AGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR TCA 90 bp TCCAAGTTCCCAGTTGGGAAGAGTAAAAGGGAGACCTGCTCAAAATGCATCAATCAGAAGACAGTAAAATaGGCCACTTATAGGGATAGG +
Preference number: 2 (lower is better)
Translates to: SKFPVGKSKRETCSKCINQKTVK*ATYRDR
Trigger: CCTATCCCTATAAGTGGCTCATTTTACTGTCTTCTG...ATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR TCA 90 bp TGCCTCAGTCACTGTTTTGCTGTTAACAAATGTGACCTGCCTGAAGAGTTTGTCCAGAAGACAGTAAAATaGGCCACTTATAGGGATAGG +
Preference number: 2 (lower is better)
Translates to: CLSHCFAVNKCDLPEEFVQKTVK*ATYRDR
Trigger: CCTATCCCTATAAGTGGCTCATTTTACTGTCTTCTG...GACAAACTCTTCAGGCAGGTCACATTTGTTAACAGCAAAACAGTGACTGAGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427179.5
3UTR-3UTR GCA 90 bp AAGCAGAGTGTCCAGAGGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTGAGACCTGCTCAAAATaGATCAATCTCAAGGTCCTT +
Preference number: 2 (lower is better)
Translates to: KQSVQREKQAQTWFLHISETCSK*INLKVL
Trigger: AAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTC...ACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR GCA 90 bp TCCAAGTTCCCAGTTGGGAAGAGTAAAAGGGAGACCTGCTCAAAATGCATCAATGAGACCTGCTCAAAATaGATCAATCTCAAGGTCCTT +
Preference number: 2 (lower is better)
Translates to: SKFPVGKSKRETCSKCINETCSK*INLKVL
Trigger: AAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTC...ATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR GCA 90 bp CAACTTATATGCTTGAGATGGGAAAATGCATACAGATCAACTTTACTGAATCTGCTCTCTCTCCAACACTaGTTGCCTTCACCCTCCTCC +
Preference number: 2 (lower is better)
Translates to: QLICLRWENAYRSTLLNLLSLQH*LPSPSS
Trigger: GGAGGAGGGTGAAGGCAAGCAGTGTTGGAGAGAGAG...CAGATTCAGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427179.5
3UTR-3UTR CCA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCACTTATATGCTTGAGATaGGAAAATGCATACAGATCA +
Preference number: 2 (lower is better)
Translates to: GRPAQNASISRSFQRCRSLICLR*ENAYRS
Trigger: TGATCTGTATGCATTTTCCCATCTCAAGCATATAAG...TGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR TCA 90 bp CAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAATGCTGTGCTGATCACTaGGTTCATAACTTTAAAAGC +
Preference number: 2 (lower is better)
Translates to: QSQGPSRDAGQLICLRWECCADH*VHNFKS
Trigger: GCTTTTAAAGTTATGAACTCAGTGATCAGCACAGCA...TTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR TCA 90 bp TCCAAGTTCCCAGTTGGGAAGAGTAAAAGGGAGACCTGCTCAAAATGCATCAATGTGGCCAGTTCATTATaGTTTTACCACTGTGTGAAT +
Preference number: 2 (lower is better)
Translates to: SKFPVGKSKRETCSKCINVASSL*FYHCVN
Trigger: ATTCACACAGTGGTAAAATCATAATGAACTGGCCAC...ATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000427179.5
3UTR-3UTR TCA 90 bp AAGCAGAGTGTCCAGAGGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCAAATAGAACTCCTCTaGAAGGCTTCACAATTACTT +
Preference number: 2 (lower is better)
Translates to: KQSVQREKQAQTWFLHISQIELL*KASQLL
Trigger: AAGTAATTGTGAAGCCTTTCAGAGGAGTTCTATTTG...ACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427179.5
3UTR-3UTR GCA 90 bp AGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTCTTGAGATGGGAAAATaGATACAGATCAACTTTACT +
Preference number: 2 (lower is better)
Translates to: RPAQNASISRSFQRCRSTLEMGK*IQINFT
Trigger: AGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAG...AGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR CCA 90 bp AGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTCTTATATGCTTGAGATaGGAAAATGCATACAGATCA +
Preference number: 2 (lower is better)
Translates to: RPAQNASISRSFQRCRSTLICLR*ENAYRS
Trigger: TGATCTGTATGCATTTTCCCATCTCAAGCATATAAG...AGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR CCA 90 bp TCCAAGTTCCCAGTTGGGAAGAGTAAAAGGGAGACCTGCTCAAAATGCATCAATAAGCAAGCTCAGACGTaGTTTTTACACATTAGTCTT +
Preference number: 2 (lower is better)
Translates to: SKFPVGKSKRETCSKCINKQAQT*FLHISL
Trigger: AAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTT...ATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR CAA 90 bp CATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTaGAGATGGGAAAATGCATACAGATCAACTTTACTGAATCTGATC +
Preference number: 2 (lower is better)
Translates to: HQSQGPSRDAGQLIC*RWENAYRSTLLNLI
Trigger: GATCAGATTCAGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR GCA 90 bp AAGCAGAGTGTCCAGAGGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCTTGAGATGGGAAAATaGATACAGATCAACTTTACT +
Preference number: 2 (lower is better)
Translates to: KQSVQREKQAQTWFLHISLEMGK*IQINFT
Trigger: AGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAG...ACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR GCA 90 bp GGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCTTAACATCTAATGCTGAGACCTGCTCAAAATaGATCAATCTCAAGGTCCTT +
Preference number: 2 (lower is better)
Translates to: GKSKLRRGFYTLVLTSNAETCSK*INLKVL
Trigger: AAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTC...AGCATTAGATGTTAAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR GCA 90 bp TCCAAGTTCCCAGTTGGGAAGAGTAAAAGGGAGACCTGCTCAAAATGCATCAATTTTATCTGGGAATATTaGCTTTTAAAGCACAGCTTG +
Preference number: 2 (lower is better)
Translates to: SKFPVGKSKRETCSKCINFIWEY*LLKHSL
Trigger: CAAGCTGTGCTTTAAAAGGCAATATTCCCAGATAAA...ATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000427179.5
3UTR-3UTR CCA 90 bp TCCAAGTTCCCAGTTGGGAAGAGTAAAAGGGAGACCTGCTCAAAATGCATCAATCTTATATGCTTGAGATaGGAAAATGCATACAGATCA +
Preference number: 2 (lower is better)
Translates to: SKFPVGKSKRETCSKCINLICLR*ENAYRS
Trigger: TGATCTGTATGCATTTTCCCATCTCAAGCATATAAG...ATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR TCA 90 bp GGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCTTAACATCTAATGCTTGCTGTGCTGATCACTaGGTTCATAACTTTAAAAGC +
Preference number: 2 (lower is better)
Translates to: GKSKLRRGFYTLVLTSNACCADH*VHNFKS
Trigger: GCTTTTAAAGTTATGAACTCAGTGATCAGCACAGCA...AGCATTAGATGTTAAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR TCA 90 bp TATTACTCCATTGTGAATCTTCTCAAGATTAGAATTGGGCTCACTCTGGCTAGAATGAACCATCCCTTGTaGCTCCTTTCAGTATCTTAT +
Preference number: 2 (lower is better)
Translates to: YYSIVNLLKIRIGLTLARMNHPL*LLSVSY
Trigger: ATAAGATACTGAAAGGAGTCACAAGGGATGGTTCAT...TCTAGCCAGAGTGAGCCCAATTCTAATCTTGAGAAGATTCACAATGGAGTAATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427179.5
3UTR-3UTR TCA 90 bp GGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCTTAACATCTAATGCTGTATCAGAGTCAAACTaGGAATACAGACGTAAATTC +
Preference number: 2 (lower is better)
Translates to: GKSKLRRGFYTLVLTSNAVSESN*EYRRKF
Trigger: GAATTTACGTCTGTATTCTCAGTTTGACTCTGATAC...AGCATTAGATGTTAAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427179.5
3UTR CAA 90 bp TACAGATCAACTTTACTGAATCTGATCAACCTATCATTCCATTTTTaGTACAAGAACTTTACATGTAGCTTTAGGGGTCATGCTCAAGCC +
Preference number: 2 (lower is better)
Translates to: YRSTLLNLINLSFHF*YKNFTCSFRGHAQA
Trigger: GGCTTGAGCATGACCCCTAAAGCTACATGTAAAGTTCTTGTACAAAAAATGGAATGATAGGTTGATCAGATTCAGTAAAGTTGATCTGTA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR CAA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAGCTCCAAGTTCCCAGTaGGGAAGAGTAAAAGGGAGA +
Preference number: 3 (lower is better)
Translates to: GRPAQNASISRSFQRCRSAPSSQ*GRVKGR
Trigger: TCTCCCTTTTACTCTTCCCAACTGGGAACTTGGAGC...TGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR TCA 72 bp GTATGTTTGCCTAAAGTCACACAATCTGTGAGGCACTaGGCCAGGATTAAACCCAAGGCCATCTGGCCTCAG +
Preference number: 3 (lower is better)
Translates to: VCLPKVTQSVRH*ARIKPKAIWPQ
Trigger: CTGAGGCCAGATGGCCTTGGGTTTAATCCTGGCTCAGTGCCTCACAGATTGTGTGACTTTAGGCAAACATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR CAA 90 bp AACCCAAGGCCATCTGGCCTCAGTGCCAATGTTTTTCAGCTCCAAGTTCCCAGTCCTGACCCTAAGGTTTaGTTCATATACTCTCTCTCC +
Preference number: 3 (lower is better)
Translates to: NPRPSGLSANVFQLQVPSPDPKV*FIYSLS
Trigger: GGAGAGAGAGTATATGAACAAAACCTTAGGGTCAGG...ACTGGGAACTTGGAGCTGAAAAACATTGGCACTGAGGCCAGATGGCCTTGGGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000427179.5
3UTR GCA 72 bp CCAGTTGGGAAGAGTAAAAGGGAGACCTGCTCAAAATaGATCAATCTCAAGGTCCTTCCAGAGATGCAGGTC +
Preference number: 3 (lower is better)
Translates to: PVGKSKRETCSK*INLKVLPEMQV
Trigger: GACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR CAA 90 bp AGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTGCTCCAAGTTCCCAGTaGGGAAGAGTAAAAGGGAGA +
Preference number: 3 (lower is better)
Translates to: RPAQNASISRSFQRCRSTAPSSQ*GRVKGR
Trigger: TCTCCCTTTTACTCTTCCCAACTGGGAACTTGGAGC...AGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR CAA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAGCACAGCTTGTGTTCTaGAAAGGAATTTGCCTTCTA +
Preference number: 3 (lower is better)
Translates to: GRPAQNASISRSFQRCRSAQLVF*KGICLL
Trigger: TAGAAGGCAAATTCCTTTCAAGAACACAAGCTGTGC...TGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427179.5
3UTR GCA 72 bp TCCAAGTTCCCAGTTGGGAAGAGTAAAAGGGAGACCTaGTCAAAATGCATCAATCTCAAGGTCCTTCCAGAG +
Preference number: 3 (lower is better)
Translates to: SKFPVGKSKRET*SKCINLKVLPE
Trigger: CTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR CAA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCACTAGGAGAAGTATGTTaGCCTAAAGTCACACAATCT +
Preference number: 3 (lower is better)
Translates to: GRPAQNASISRSFQRCRSLGEVC*PKVTQS
Trigger: AGATTGTGTGACTTTAGGCAAACATACTTCTCCTAG...TGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR CAA 90 bp AGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTGCCTCAGTCACTGTTTaGCTGTTAACAAATGTGACC +
Preference number: 3 (lower is better)
Translates to: RPAQNASISRSFQRCRSTASVTV*LLTNVT
Trigger: GGTCACATTTGTTAACAGCAAAACAGTGACTGAGGC...AGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427179.5
3UTR-3UTR CAA 90 bp CAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAATGATGAGCTGTGACTaGCGGGAGAATGTCTTTCCA +
Preference number: 3 (lower is better)
Translates to: QSQGPSRDAGQLICLRWEMMSCD*RENVFP
Trigger: TGGAAAGACATTCTCCCGCAAGTCACAGCTCATCAT...TTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427179.5
3UTR-3UTR CAA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCATTATCTATTGGGATGTaGTCCCCAAGCTTATCAAAT +
Preference number: 3 (lower is better)
Translates to: GRPAQNASISRSFQRCRSLSIGM*SPSLSN
Trigger: ATTTGATAAGCTTGGGGACAACATCCCAATAGATAA...TGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR CAA 90 bp GGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCTTAACATCTAATGCTGCTCCAAGTTCCCAGTaGGGAAGAGTAAAAGGGAGA +
Preference number: 3 (lower is better)
Translates to: GKSKLRRGFYTLVLTSNAAPSSQ*GRVKGR
Trigger: TCTCCCTTTTACTCTTCCCAACTGGGAACTTGGAGC...AGCATTAGATGTTAAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR CAA 90 bp AGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTCTAGGAGAAGTATGTTaGCCTAAAGTCACACAATCT +
Preference number: 3 (lower is better)
Translates to: RPAQNASISRSFQRCRSTLGEVC*PKVTQS
Trigger: AGATTGTGTGACTTTAGGCAAACATACTTCTCCTAG...AGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR CAA 90 bp AGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTCAGAGCAGTTACAGTaGCATGCTCTGAAAAATGTT +
Preference number: 3 (lower is better)
Translates to: RPAQNASISRSFQRCRSTSEQLQ*HALKNV
Trigger: AACATTTTTCAGAGCATGCAACTGTAACTGCTCTGA...AGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427179.5
3UTR-3UTR CAA 90 bp CAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAATTCTCAAGATTAGAATaGGGCTCACTCTGGCTAGAT +
Preference number: 3 (lower is better)
Translates to: QSQGPSRDAGQLICLRWEFSRLE*GSLWLD
Trigger: ATCTAGCCAGAGTGAGCCCAATTCTAATCTTGAGAA...TTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427179.5
3UTR-3UTR CAA 90 bp TCCAAGTTCCCAGTTGGGAAGAGTAAAAGGGAGACCTGCTCAAAATGCATCAATGGTCAACTTATATGCTaGAGATGGGAAAATGCATAC +
Preference number: 3 (lower is better)
Translates to: SKFPVGKSKRETCSKCINGQLIC*RWENAY
Trigger: GTATGCATTTTCCCATCTCAAGCATATAAGTTGACC...ATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR CAA 90 bp CAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAGGTCAACTTATATGCTaGAGATGGGAAAATGCATAC +
Preference number: 3 (lower is better)
Translates to: QSQGPSRDAGQLICLRWEGQLIC*RWENAY
Trigger: GTATGCATTTTCCCATCTCAAGCATATAAGTTGACC...TTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR CAA 90 bp TGCCTCAGTCACTGTTTTGCTGTTAACAAATGTGACCTGCCTGAAGAGTTTGTCCTAGGAGAAGTATGTTaGCCTAAAGTCACACAATCT +
Preference number: 3 (lower is better)
Translates to: CLSHCFAVNKCDLPEEFVLGEVC*PKVTQS
Trigger: AGATTGTGTGACTTTAGGCAAACATACTTCTCCTAG...GACAAACTCTTCAGGCAGGTCACATTTGTTAACAGCAAAACAGTGACTGAGGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427179.5
3UTR-3UTR CAA 90 bp CAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAATTATCTATTGGGATGTaGTCCCCAAGCTTATCAAAT +
Preference number: 3 (lower is better)
Translates to: QSQGPSRDAGQLICLRWELSIGM*SPSLSN
Trigger: ATTTGATAAGCTTGGGGACAACATCCCAATAGATAA...TTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR CAA 90 bp AAGCAGAGTGTCCAGAGGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTTTATCTATTGGGATGTaGTCCCCAAGCTTATCAAAT +
Preference number: 3 (lower is better)
Translates to: KQSVQREKQAQTWFLHISLSIGM*SPSLSN
Trigger: ATTTGATAAGCTTGGGGACAACATCCCAATAGATAA...ACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR GCA 72 bp TCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATaGTTGAGATGGGAAAATGCATACAGATCAACTTTA +
Preference number: 3 (lower is better)
Translates to: SQGPSRDAGQLI*LRWENAYRSTL
Trigger: TAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR CAA 90 bp GGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCTTAACATCTAATGCTGGTCAACTTATATGCTaGAGATGGGAAAATGCATAC +
Preference number: 3 (lower is better)
Translates to: GKSKLRRGFYTLVLTSNAGQLIC*RWENAY
Trigger: GTATGCATTTTCCCATCTCAAGCATATAAGTTGACC...AGCATTAGATGTTAAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR CAA 90 bp GGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCTTAACATCTAATGCTTTATCTATTGGGATGTaGTCCCCAAGCTTATCAAAT +
Preference number: 3 (lower is better)
Translates to: GKSKLRRGFYTLVLTSNALSIGM*SPSLSN
Trigger: ATTTGATAAGCTTGGGGACAACATCCCAATAGATAA...AGCATTAGATGTTAAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR-3UTR CAA 90 bp TATTACTCCATTGTGAATCTTCTCAAGATTAGAATTGGGCTCACTCTGGCTAGATTATCTATTGGGATGTaGTCCCCAAGCTTATCAAAT +
Preference number: 3 (lower is better)
Translates to: YYSIVNLLKIRIGLTLARLSIGM*SPSLSN
Trigger: ATTTGATAAGCTTGGGGACAACATCCCAATAGATAA...TCTAGCCAGAGTGAGCCCAATTCTAATCTTGAGAAGATTCACAATGGAGTAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427179.5
3UTR GCA 72 bp AGATGCAGGTCAACTTATATGCTTGAGATGGGAAAATaGATACAGATCAACTTTACTGAATCTGATCAACCT +
Preference number: 3 (lower is better)
Translates to: RCRSTYMLEMGK*IQINFTESDQP
Trigger: AGGTTGATCAGATTCAGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTGACCTGCATCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR TCA 72 bp ATTTATGTCATTCAGAGCAGTTACAGTTGCATGCTCTaGAAAATGTTTCTCAAATACGCTCACATCTCTTTA +
Preference number: 3 (lower is better)
Translates to: IYVIQSSYSCML*KMFLKYAHISL
Trigger: TAAAGAGATGTGAGCGTATTTGAGAAACATTTTTCAGAGCATGCAACTGTAACTGCTCTGAATGACATAAAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427179.5
CDS-3UTR CCA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCATGCGCCGTTCCGTACTaGGCGGTTTTGCCCGTTCCG +
Preference number: 4 (lower is better)
Translates to: GRPAQNASISRSFQRCRSCAVPY*AVLPVP
Trigger: CGGAACGGGCAAAACCGCCCAGTACGGAACGGCGCA...TGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000446148.6
CDS-3UTR TCA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCACACACATCCCGCCTCTaGCTCCCAGCTCGATTATCA +
Preference number: 4 (lower is better)
Translates to: GRPAQNASISRSFQRCRSHTSRL*LPARLS
Trigger: TGATAATCGAGCTGGGAGTCAGAGGCGGGATGTGTG...TGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR GCA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAAGGAAGCAACATGGCTaGTCCCTGGAGCTGTTTCCG +
Preference number: 4 (lower is better)
Translates to: GRPAQNASISRSFQRCRSRKQHG*SLELFP
Trigger: CGGAAACAGCTCCAGGGAGCAGCCATGTTGCTTCCT...TGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000446148.6
CDS-3UTR CCA 90 bp AACCCAAGGCCATCTGGCCTCAGTGCCAATGTTTTTCAGCTCCAAGTTCCCAGTGTTCAGGAAGCAACATaGCTGCTCCCTGGAGCTGTT +
Preference number: 4 (lower is better)
Translates to: NPRPSGLSANVFQLQVPSVQEAT*LLPGAV
Trigger: AACAGCTCCAGGGAGCAGCCATGTTGCTTCCTGAAC...ACTGGGAACTTGGAGCTGAAAAACATTGGCACTGAGGCCAGATGGCCTTGGGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000446148.6
CDS-3UTR TCA 90 bp ATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAAAATGGGGCCGCCATCTTaGGAGCCCGGTCGTCTTCGT +
Preference number: 4 (lower is better)
Translates to: ISRSFQRCRSTYMLEMGKMGPPS*EPGRLR
Trigger: ACGAAGACGACCGGGCTCTCAAGATGGCGGCCCCAT...TTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000418587.6
ENST00000446148.6
CDS-3UTR TCA 90 bp AACCCAAGGCCATCTGGCCTCAGTGCCAATGTTTTTCAGCTCCAAGTTCCCAGTAACTGGATACCCCATTaGGACCAGGTGGCTGTAGTT +
Preference number: 4 (lower is better)
Translates to: NPRPSGLSANVFQLQVPSNWIPH*DQVAVV
Trigger: AACTACAGCCACCTGGTCTCAATGGGGTATCCAGTT...ACTGGGAACTTGGAGCTGAAAAACATTGGCACTGAGGCCAGATGGCCTTGGGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp AACCCAAGGCCATCTGGCCTCAGTGCCAATGTTTTTCAGCTCCAAGTTCCCAGTGATGAAACTTCTCACTaGAGGCTTTTCCGCATGCAC +
Preference number: 4 (lower is better)
Translates to: NPRPSGLSANVFQLQVPSDETSH*RLFRMH
Trigger: GTGCATGCGGAAAAGCCTTCAGTGAGAAGTTTCATC...ACTGGGAACTTGGAGCTGAAAAACATTGGCACTGAGGCCAGATGGCCTTGGGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR GCA 90 bp AGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTCGTACTGGGCGGTTTTaGCCGTTCCGCATCTTCAGA +
Preference number: 4 (lower is better)
Translates to: RPAQNASISRSFQRCRSTRTGRF*PFRIFR
Trigger: TCTGAAGATGCGGAACGGGCAAAACCGCCCAGTACG...AGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000446148.6
CDS-3UTR TCA 90 bp TCCAAGTTCCCAGTTGGGAAGAGTAAAAGGGAGACCTGCTCAAAATGCATCAATCACACATCCCGCCTCTaGCTCCCAGCTCGATTATCA +
Preference number: 4 (lower is better)
Translates to: SKFPVGKSKRETCSKCINHTSRL*LPARLS
Trigger: TGATAATCGAGCTGGGAGTCAGAGGCGGGATGTGTG...ATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCACATGACTGGGAGTTGTaGAGGTTACTCTTCCTGTCT +
Preference number: 4 (lower is better)
Translates to: GRPAQNASISRSFQRCRSHDWEL*RLLFLS
Trigger: AGACAGGAAGAGTAACCTTCACAACTCCCAGTCATG...TGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp AACCCAAGGCCATCTGGCCTCAGTGCCAATGTTTTTCAGCTCCAAGTTCCCAGTTGTCCCCAAAATACATaGCTGGGAGTTGTGAAGGTT +
Preference number: 4 (lower is better)
Translates to: NPRPSGLSANVFQLQVPSCPQNT*LGVVKV
Trigger: AACCTTCACAACTCCCAGTCATGTATTTTGGGGACA...ACTGGGAACTTGGAGCTGAAAAACATTGGCACTGAGGCCAGATGGCCTTGGGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAAAGTCACACAATCTGTaGGGCACTGAGCCAGGATTA +
Preference number: 4 (lower is better)
Translates to: GRPAQNASISRSFQRCRSKSHNL*GTEPGL
Trigger: TAATCCTGGCTCAGTGCCTCACAGATTGTGTGACTT...TGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR GCA 90 bp CAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAACTCTCTCTCCAACACTaGTTGCCTTCACCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: QSQGPSRDAGQLICLRWELSLQH*LPSPSS
Trigger: GGAGGAGGGTGAAGGCAAGCAGTGTTGGAGAGAGAG...TTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427179.5
CDS-3UTR CCA 90 bp GGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCTTAACATCTAATGCTTGCGCCGTTCCGTACTaGGCGGTTTTGCCCGTTCCG +
Preference number: 4 (lower is better)
Translates to: GKSKLRRGFYTLVLTSNACAVPY*AVLPVP
Trigger: CGGAACGGGCAAAACCGCCCAGTACGGAACGGCGCA...AGCATTAGATGTTAAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000446148.6
CDS-3UTR TCA 90 bp AACCCAAGGCCATCTGGCCTCAGTGCCAATGTTTTTCAGCTCCAAGTTCCCAGTTTCCAAAAGGCCAGATaGCTGGTAAATTTTCCTCAG +
Preference number: 4 (lower is better)
Translates to: NPRPSGLSANVFQLQVPSFQKAR*LVNFPQ
Trigger: CTGAGGAAAATTTACCAGTCATCTGGCCTTTTGGAA...ACTGGGAACTTGGAGCTGAAAAACATTGGCACTGAGGCCAGATGGCCTTGGGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000394226.2
ENST00000427179.5
CDS-3UTR TCA 90 bp AGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTAACTGGATACCCCATTaGGACCAGGTGGCTGTAGTT +
Preference number: 4 (lower is better)
Translates to: RPAQNASISRSFQRCRSTNWIPH*DQVAVV
Trigger: AACTACAGCCACCTGGTCTCAATGGGGTATCCAGTT...AGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp AACCCAAGGCCATCTGGCCTCAGTGCCAATGTTTTTCAGCTCCAAGTTCCCAGTCAGAAGACAGTAAAATaGGCCACTTATAGGGATAGG +
Preference number: 4 (lower is better)
Translates to: NPRPSGLSANVFQLQVPSQKTVK*ATYRDR
Trigger: CCTATCCCTATAAGTGGCTCATTTTACTGTCTTCTG...ACTGGGAACTTGGAGCTGAAAAACATTGGCACTGAGGCCAGATGGCCTTGGGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR GCA 90 bp ATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAAAAGGAAGCAACATGGCTaGTCCCTGGAGCTGTTTCCG +
Preference number: 4 (lower is better)
Translates to: ISRSFQRCRSTYMLEMGKRKQHG*SLELFP
Trigger: CGGAAACAGCTCCAGGGAGCAGCCATGTTGCTTCCT...TTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000446148.6
CDS-3UTR GCA 90 bp ATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAAACGTACTGGGCGGTTTTaGCCGTTCCGCATCTTCAGA +
Preference number: 4 (lower is better)
Translates to: ISRSFQRCRSTYMLEMGKRTGRF*PFRIFR
Trigger: TCTGAAGATGCGGAACGGGCAAAACCGCCCAGTACG...TTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000446148.6
CDS-3UTR CCA 90 bp TCCAAGTTCCCAGTTGGGAAGAGTAAAAGGGAGACCTGCTCAAAATGCATCAATGTTCAGGAAGCAACATaGCTGCTCCCTGGAGCTGTT +
Preference number: 4 (lower is better)
Translates to: SKFPVGKSKRETCSKCINVQEAT*LLPGAV
Trigger: AACAGCTCCAGGGAGCAGCCATGTTGCTTCCTGAAC...ATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000446148.6
CDS-3UTR CCA 90 bp CAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAGTTCAGGAAGCAACATaGCTGCTCCCTGGAGCTGTT +
Preference number: 4 (lower is better)
Translates to: QSQGPSRDAGQLICLRWEVQEAT*LLPGAV
Trigger: AACAGCTCCAGGGAGCAGCCATGTTGCTTCCTGAAC...TTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000446148.6
CDS-3UTR TCA 90 bp CAACTTATATGCTTGAGATGGGAAAATGCATACAGATCAACTTTACTGAATCTGATGGGGCCGCCATCTTaGGAGCCCGGTCGTCTTCGT +
Preference number: 4 (lower is better)
Translates to: QLICLRWENAYRSTLLNLMGPPS*EPGRLR
Trigger: ACGAAGACGACCGGGCTCTCAAGATGGCGGCCCCAT...CAGATTCAGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000418587.6
ENST00000446148.6
CDS-3UTR TCA 90 bp TCCAAGTTCCCAGTTGGGAAGAGTAAAAGGGAGACCTGCTCAAAATGCATCAATAACTGGATACCCCATTaGGACCAGGTGGCTGTAGTT +
Preference number: 4 (lower is better)
Translates to: SKFPVGKSKRETCSKCINNWIPH*DQVAVV
Trigger: AACTACAGCCACCTGGTCTCAATGGGGTATCCAGTT...ATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp AACCCAAGGCCATCTGGCCTCAGTGCCAATGTTTTTCAGCTCCAAGTTCCCAGTATGAACCATCCCTTGTaGCTCCTTTCAGTATCTTAT +
Preference number: 4 (lower is better)
Translates to: NPRPSGLSANVFQLQVPSMNHPL*LLSVSY
Trigger: ATAAGATACTGAAAGGAGTCACAAGGGATGGTTCAT...ACTGGGAACTTGGAGCTGAAAAACATTGGCACTGAGGCCAGATGGCCTTGGGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR GCA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAGAGACCTGCTCAAAATaGATCAATCTCAAGGTCCTT +
Preference number: 4 (lower is better)
Translates to: GRPAQNASISRSFQRCRSETCSK*INLKVL
Trigger: AAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTC...TGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp AAGCAGAGTGTCCAGAGGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCATGACTGGGAGTTGTaGAGGTTACTCTTCCTGTCT +
Preference number: 4 (lower is better)
Translates to: KQSVQREKQAQTWFLHISHDWEL*RLLFLS
Trigger: AGACAGGAAGAGTAACCTTCACAACTCCCAGTCATG...ACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAGTTTCTATGCACTCTTaGAATATTTTCCCCAGTGGA +
Preference number: 4 (lower is better)
Translates to: GRPAQNASISRSFQRCRSVSMHS*NIFPSG
Trigger: TCCACTGGGGAAAATATTTCAAGAGTGCATAGAAAC...TGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp AAGCAGAGTGTCCAGAGGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTGATGAAACTTCTCACTaGAGGCTTTTCCGCATGCAC +
Preference number: 4 (lower is better)
Translates to: KQSVQREKQAQTWFLHISDETSH*RLFRMH
Trigger: GTGCATGCGGAAAAGCCTTCAGTGAGAAGTTTCATC...ACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp TCCAAGTTCCCAGTTGGGAAGAGTAAAAGGGAGACCTGCTCAAAATGCATCAATGATGAAACTTCTCACTaGAGGCTTTTCCGCATGCAC +
Preference number: 4 (lower is better)
Translates to: SKFPVGKSKRETCSKCINDETSH*RLFRMH
Trigger: GTGCATGCGGAAAAGCCTTCAGTGAGAAGTTTCATC...ATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAGTGGCCAGTTCATTATaGTTTTACCACTGTGTGAAT +
Preference number: 4 (lower is better)
Translates to: GRPAQNASISRSFQRCRSVASSL*FYHCVN
Trigger: ATTCACACAGTGGTAAAATCATAATGAACTGGCCAC...TGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR GCA 90 bp GGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCTTAACATCTAATGCTATTGGCAAACTCTCCTaGTTCCTGTCCGCGAGCACC +
Preference number: 4 (lower is better)
Translates to: GKSKLRRGFYTLVLTSNAIGKLS*FLSAST
Trigger: GGTGCTCGCGGACAGGAAGCAGGAGAGTTTGCCAAT...AGCATTAGATGTTAAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000446148.6
CDS-3UTR CCA 90 bp AACCCAAGGCCATCTGGCCTCAGTGCCAATGTTTTTCAGCTCCAAGTTCCCAGTAAGCAAGCTCAGACGTaGTTTTTACACATTAGTCTT +
Preference number: 4 (lower is better)
Translates to: NPRPSGLSANVFQLQVPSKQAQT*FLHISL
Trigger: AAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTT...ACTGGGAACTTGGAGCTGAAAAACATTGGCACTGAGGCCAGATGGCCTTGGGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp CAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAACGTGGGGGCTCCCATaGCAGACAGATTATTTTATA +
Preference number: 4 (lower is better)
Translates to: QSQGPSRDAGQLICLRWETWGLP*QTDYFI
Trigger: TATAAAATAATCTGTCTGTCATGGGAGCCCCCACGT...TTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp ATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAAACATGACTGGGAGTTGTaGAGGTTACTCTTCCTGTCT +
Preference number: 4 (lower is better)
Translates to: ISRSFQRCRSTYMLEMGKHDWEL*RLLFLS
Trigger: AGACAGGAAGAGTAACCTTCACAACTCCCAGTCATG...TTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp TCCAAGTTCCCAGTTGGGAAGAGTAAAAGGGAGACCTGCTCAAAATGCATCAATTGTCCCCAAAATACATaGCTGGGAGTTGTGAAGGTT +
Preference number: 4 (lower is better)
Translates to: SKFPVGKSKRETCSKCINCPQNT*LGVVKV
Trigger: AACCTTCACAACTCCCAGTCATGTATTTTGGGGACA...ATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp CAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAATGTCCCCAAAATACATaGCTGGGAGTTGTGAAGGTT +
Preference number: 4 (lower is better)
Translates to: QSQGPSRDAGQLICLRWECPQNT*LGVVKV
Trigger: AACCTTCACAACTCCCAGTCATGTATTTTGGGGACA...TTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAATTATATTTATGCCCTaGTGCCTCAGTCACTGTTTT +
Preference number: 4 (lower is better)
Translates to: GRPAQNASISRSFQRCRSIIFMP*CLSHCF
Trigger: AAAACAGTGACTGAGGCATCAGGGCATAAATATAAT...TGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp ATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAAAAAGTCACACAATCTGTaGGGCACTGAGCCAGGATTA +
Preference number: 4 (lower is better)
Translates to: ISRSFQRCRSTYMLEMGKKSHNL*GTEPGL
Trigger: TAATCCTGGCTCAGTGCCTCACAGATTGTGTGACTT...TTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGAT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR CCA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAAAGCAAGCTCAGACGTaGTTTTTACACATTAGTCTT +
Preference number: 4 (lower is better)
Translates to: GRPAQNASISRSFQRCRSKQAQT*FLHISL
Trigger: AAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTT...TGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp CAACTTATATGCTTGAGATGGGAAAATGCATACAGATCAACTTTACTGAATCTGCACACATCCCGCCTCTaGCTCCCAGCTCGATTATCA +
Preference number: 4 (lower is better)
Translates to: QLICLRWENAYRSTLLNLHTSRL*LPARLS
Trigger: TGATAATCGAGCTGGGAGTCAGAGGCGGGATGTGTG...CAGATTCAGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp ATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAAATGTCCCCAAAATACATaGCTGGGAGTTGTGAAGGTT +
Preference number: 4 (lower is better)
Translates to: ISRSFQRCRSTYMLEMGKCPQNT*LGVVKV
Trigger: AACCTTCACAACTCCCAGTCATGTATTTTGGGGACA...TTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp AGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTGATTTTACCACTGTGTaGATTCTCTGGTGTACAGTT +
Preference number: 4 (lower is better)
Translates to: RPAQNASISRSFQRCRSTDFTTV*ILWCTV
Trigger: AACTGTACACCAGAGAATTCACACAGTGGTAAAATC...AGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp AGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTGTGGCCAGTTCATTATaGTTTTACCACTGTGTGAAT +
Preference number: 4 (lower is better)
Translates to: RPAQNASISRSFQRCRSTVASSL*FYHCVN
Trigger: ATTCACACAGTGGTAAAATCATAATGAACTGGCCAC...AGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp GGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCTTAACATCTAATGCTCAATCTGTGAGGCACTaGGCCAGGATTAAACCCAAG +
Preference number: 4 (lower is better)
Translates to: GKSKLRRGFYTLVLTSNAQSVRH*ARIKPK
Trigger: CTTGGGTTTAATCCTGGCTCAGTGCCTCACAGATTG...AGCATTAGATGTTAAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp CAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAACAGAAGACAGTAAAATaGGCCACTTATAGGGATAGG +
Preference number: 4 (lower is better)
Translates to: QSQGPSRDAGQLICLRWEQKTVK*ATYRDR
Trigger: CCTATCCCTATAAGTGGCTCATTTTACTGTCTTCTG...TTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp AAGCAGAGTGTCCAGAGGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCAGAAGACAGTAAAATaGGCCACTTATAGGGATAGG +
Preference number: 4 (lower is better)
Translates to: KQSVQREKQAQTWFLHISQKTVK*ATYRDR
Trigger: CCTATCCCTATAAGTGGCTCATTTTACTGTCTTCTG...ACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR GCA 90 bp AGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTAGTGGATTATATTTATaGCCTGATGCCTCAGTCACT +
Preference number: 4 (lower is better)
Translates to: RPAQNASISRSFQRCRSTSGLYL*PDASVT
Trigger: AGTGACTGAGGCATCAGGGCATAAATATAATCCACT...AGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR GCA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCACTTGAGATGGGAAAATaGATACAGATCAACTTTACT +
Preference number: 4 (lower is better)
Translates to: GRPAQNASISRSFQRCRSLEMGK*IQINFT
Trigger: AGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAG...TGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp CAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAATGAACCATCCCTTGTaGCTCCTTTCAGTATCTTAT +
Preference number: 4 (lower is better)
Translates to: QSQGPSRDAGQLICLRWEMNHPL*LLSVSY
Trigger: ATAAGATACTGAAAGGAGTCACAAGGGATGGTTCAT...TTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp AGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTATTATATTTATGCCCTaGTGCCTCAGTCACTGTTTT +
Preference number: 4 (lower is better)
Translates to: RPAQNASISRSFQRCRSTIIFMP*CLSHCF
Trigger: AAAACAGTGACTGAGGCATCAGGGCATAAATATAAT...AGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp AAGCAGAGTGTCCAGAGGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTGTTTCTATGCACTCTTaGAATATTTTCCCCAGTGGA +
Preference number: 4 (lower is better)
Translates to: KQSVQREKQAQTWFLHISVSMHS*NIFPSG
Trigger: TCCACTGGGGAAAATATTTCAAGAGTGCATAGAAAC...ACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp GGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCTTAACATCTAATGCTGATGAAACTTCTCACTaGAGGCTTTTCCGCATGCAC +
Preference number: 4 (lower is better)
Translates to: GKSKLRRGFYTLVLTSNADETSH*RLFRMH
Trigger: GTGCATGCGGAAAAGCCTTCAGTGAGAAGTTTCATC...AGCATTAGATGTTAAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp AAGCAGAGTGTCCAGAGGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTGATTTTACCACTGTGTaGATTCTCTGGTGTACAGTT +
Preference number: 4 (lower is better)
Translates to: KQSVQREKQAQTWFLHISDFTTV*ILWCTV
Trigger: AACTGTACACCAGAGAATTCACACAGTGGTAAAATC...ACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp CAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAGATTTTACCACTGTGTaGATTCTCTGGTGTACAGTT +
Preference number: 4 (lower is better)
Translates to: QSQGPSRDAGQLICLRWEDFTTV*ILWCTV
Trigger: AACTGTACACCAGAGAATTCACACAGTGGTAAAATC...TTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp AAGCAGAGTGTCCAGAGGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTGTGGCCAGTTCATTATaGTTTTACCACTGTGTGAAT +
Preference number: 4 (lower is better)
Translates to: KQSVQREKQAQTWFLHISVASSL*FYHCVN
Trigger: ATTCACACAGTGGTAAAATCATAATGAACTGGCCAC...ACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp AAGCAGAGTGTCCAGAGGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTTGCTGTGCTGATCACTaGGTTCATAACTTTAAAAGC +
Preference number: 4 (lower is better)
Translates to: KQSVQREKQAQTWFLHISCCADH*VHNFKS
Trigger: GCTTTTAAAGTTATGAACTCAGTGATCAGCACAGCA...ACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR GCA 90 bp CAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAAGTGGATTATATTTATaGCCTGATGCCTCAGTCACT +
Preference number: 4 (lower is better)
Translates to: QSQGPSRDAGQLICLRWESGLYL*PDASVT
Trigger: AGTGACTGAGGCATCAGGGCATAAATATAATCCACT...TTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR CAA 72 bp CAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTaGAGATGGGAAAATGCATACAGATCAACTTTACTG +
Preference number: 4 (lower is better)
Translates to: QGPSRDAGQLIC*RWENAYRSTLL
Trigger: CAGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000274599.9
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp GGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCTTAACATCTAATGCTACGTGGGGGCTCCCATaGCAGACAGATTATTTTATA +
Preference number: 4 (lower is better)
Translates to: GKSKLRRGFYTLVLTSNATWGLP*QTDYFI
Trigger: TATAAAATAATCTGTCTGTCATGGGAGCCCCCACGT...AGCATTAGATGTTAAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp CAACTTATATGCTTGAGATGGGAAAATGCATACAGATCAACTTTACTGAATCTGAACTGGATACCCCATTaGGACCAGGTGGCTGTAGTT +
Preference number: 4 (lower is better)
Translates to: QLICLRWENAYRSTLLNLNWIPH*DQVAVV
Trigger: AACTACAGCCACCTGGTCTCAATGGGGTATCCAGTT...CAGATTCAGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp GGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCTTAACATCTAATGCTCCTTTCAGTATCTTATaGTGGAAGGAAACTGTCCCC +
Preference number: 4 (lower is better)
Translates to: GKSKLRRGFYTLVLTSNAPFSIL*WKETVP
Trigger: GGGGACAGTTTCCTTCCATCATAAGATACTGAAAGG...AGCATTAGATGTTAAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp ATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAAAATGAACCATCCCTTGTaGCTCCTTTCAGTATCTTAT +
Preference number: 4 (lower is better)
Translates to: ISRSFQRCRSTYMLEMGKMNHPL*LLSVSY
Trigger: ATAAGATACTGAAAGGAGTCACAAGGGATGGTTCAT...TTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp TGCCTCAGTCACTGTTTTGCTGTTAACAAATGTGACCTGCCTGAAGAGTTTGTCATTATATTTATGCCCTaGTGCCTCAGTCACTGTTTT +
Preference number: 4 (lower is better)
Translates to: CLSHCFAVNKCDLPEEFVIIFMP*CLSHCF
Trigger: AAAACAGTGACTGAGGCATCAGGGCATAAATATAAT...GACAAACTCTTCAGGCAGGTCACATTTGTTAACAGCAAAACAGTGACTGAGGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427179.5
CDS-3UTR TCA 90 bp ATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAAAGATTTTACCACTGTGTaGATTCTCTGGTGTACAGTT +
Preference number: 4 (lower is better)
Translates to: ISRSFQRCRSTYMLEMGKDFTTV*ILWCTV
Trigger: AACTGTACACCAGAGAATTCACACAGTGGTAAAATC...TTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp ATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAAATGCTGTGCTGATCACTaGGTTCATAACTTTAAAAGC +
Preference number: 4 (lower is better)
Translates to: ISRSFQRCRSTYMLEMGKCCADH*VHNFKS
Trigger: GCTTTTAAAGTTATGAACTCAGTGATCAGCACAGCA...TTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp CAACTTATATGCTTGAGATGGGAAAATGCATACAGATCAACTTTACTGAATCTGCAATCTGTGAGGCACTaGGCCAGGATTAAACCCAAG +
Preference number: 4 (lower is better)
Translates to: QLICLRWENAYRSTLLNLQSVRH*ARIKPK
Trigger: CTTGGGTTTAATCCTGGCTCAGTGCCTCACAGATTG...CAGATTCAGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp CAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAACAAATAGAACTCCTCTaGAAGGCTTCACAATTACTT +
Preference number: 4 (lower is better)
Translates to: QSQGPSRDAGQLICLRWEQIELL*KASQLL
Trigger: AAGTAATTGTGAAGCCTTTCAGAGGAGTTCTATTTG...TTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427179.5
CDS-3UTR TCA 90 bp TGCCTCAGTCACTGTTTTGCTGTTAACAAATGTGACCTGCCTGAAGAGTTTGTCGTATCAGAGTCAAACTaGGAATACAGACGTAAATTC +
Preference number: 4 (lower is better)
Translates to: CLSHCFAVNKCDLPEEFVVSESN*EYRRKF
Trigger: GAATTTACGTCTGTATTCTCAGTTTGACTCTGATAC...GACAAACTCTTCAGGCAGGTCACATTTGTTAACAGCAAAACAGTGACTGAGGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427179.5
CDS-3UTR GCA 90 bp ATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAAAAGTGGATTATATTTATaGCCTGATGCCTCAGTCACT +
Preference number: 4 (lower is better)
Translates to: ISRSFQRCRSTYMLEMGKSGLYL*PDASVT
Trigger: AGTGACTGAGGCATCAGGGCATAAATATAATCCACT...TTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR CCA 90 bp AAGCAGAGTGTCCAGAGGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTAAGCAAGCTCAGACGTaGTTTTTACACATTAGTCTT +
Preference number: 4 (lower is better)
Translates to: KQSVQREKQAQTWFLHISKQAQT*FLHISL
Trigger: AAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTT...ACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp TATTACTCCATTGTGAATCTTCTCAAGATTAGAATTGGGCTCACTCTGGCTAGATTCCAAAAGGCCAGATaGCTGGTAAATTTTCCTCAG +
Preference number: 4 (lower is better)
Translates to: YYSIVNLLKIRIGLTLARFQKAR*LVNFPQ
Trigger: CTGAGGAAAATTTACCAGTCATCTGGCCTTTTGGAA...TCTAGCCAGAGTGAGCCCAATTCTAATCTTGAGAAGATTCACAATGGAGTAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427179.5
CDS-3UTR TCA 90 bp ATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAAAATTATATTTATGCCCTaGTGCCTCAGTCACTGTTTT +
Preference number: 4 (lower is better)
Translates to: ISRSFQRCRSTYMLEMGKIIFMP*CLSHCF
Trigger: AAAACAGTGACTGAGGCATCAGGGCATAAATATAAT...TTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR GCA 90 bp TCCAAGTTCCCAGTTGGGAAGAGTAAAAGGGAGACCTGCTCAAAATGCATCAATCTTGAGATGGGAAAATaGATACAGATCAACTTTACT +
Preference number: 4 (lower is better)
Translates to: SKFPVGKSKRETCSKCINLEMGK*IQINFT
Trigger: AGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAG...ATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR GCA 90 bp CAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAATTTATCTGGGAATATTaGCTTTTAAAGCACAGCTTG +
Preference number: 4 (lower is better)
Translates to: QSQGPSRDAGQLICLRWEFIWEY*LLKHSL
Trigger: CAAGCTGTGCTTTAAAAGGCAATATTCCCAGATAAA...TTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427179.5
CDS-3UTR CCA 90 bp CAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAACTTATATGCTTGAGATaGGAAAATGCATACAGATCA +
Preference number: 4 (lower is better)
Translates to: QSQGPSRDAGQLICLRWELICLR*ENAYRS
Trigger: TGATCTGTATGCATTTTCCCATCTCAAGCATATAAG...TTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR CCA 90 bp CAACTTATATGCTTGAGATGGGAAAATGCATACAGATCAACTTTACTGAATCTGTCAGCAGGCACCATGTaGAGGAGGGATCATTCTTTA +
Preference number: 4 (lower is better)
Translates to: QLICLRWENAYRSTLLNLSAGTM*RRDHSL
Trigger: TAAAGAATGATCCCTCCTCCACATGGTGCCTGCTGA...CAGATTCAGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000446148.6
CDS-3UTR TCA 90 bp GGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCTTAACATCTAATGCTGTTTCTATGCACTCTTaGAATATTTTCCCCAGTGGA +
Preference number: 4 (lower is better)
Translates to: GKSKLRRGFYTLVLTSNAVSMHS*NIFPSG
Trigger: TCCACTGGGGAAAATATTTCAAGAGTGCATAGAAAC...AGCATTAGATGTTAAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp GGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCTTAACATCTAATGCTGTGGCCAGTTCATTATaGTTTTACCACTGTGTGAAT +
Preference number: 4 (lower is better)
Translates to: GKSKLRRGFYTLVLTSNAVASSL*FYHCVN
Trigger: ATTCACACAGTGGTAAAATCATAATGAACTGGCCAC...AGCATTAGATGTTAAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR GCA 90 bp GGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCTTAACATCTAATGCTAGTGGATTATATTTATaGCCTGATGCCTCAGTCACT +
Preference number: 4 (lower is better)
Translates to: GKSKLRRGFYTLVLTSNASGLYL*PDASVT
Trigger: AGTGACTGAGGCATCAGGGCATAAATATAATCCACT...AGCATTAGATGTTAAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR CCA 90 bp ATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAAACTTATATGCTTGAGATaGGAAAATGCATACAGATCA +
Preference number: 4 (lower is better)
Translates to: ISRSFQRCRSTYMLEMGKLICLR*ENAYRS
Trigger: TGATCTGTATGCATTTTCCCATCTCAAGCATATAAG...TTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
3UTR CAA 72 bp CCTCATCAGCATTTATGTCATTCAGAGCAGTTACAGTaGCATGCTCTGAAAAATGTTTCTCAAATACGCTCA +
Preference number: 4 (lower is better)
Translates to: PHQHLCHSEQLQ*HALKNVSQIRS
Trigger: TGAGCGTATTTGAGAAACATTTTTCAGAGCATGCAACTGTAACTGCTCTGAATGACATAAATGCTGATGAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000427179.5
CDS-3UTR GCA 90 bp CAACTTATATGCTTGAGATGGGAAAATGCATACAGATCAACTTTACTGAATCTGGAGACCTGCTCAAAATaGATCAATCTCAAGGTCCTT +
Preference number: 4 (lower is better)
Translates to: QLICLRWENAYRSTLLNLETCSK*INLKVL
Trigger: AAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTC...CAGATTCAGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR TCA 90 bp CAACTTATATGCTTGAGATGGGAAAATGCATACAGATCAACTTTACTGAATCTGATGAACCATCCCTTGTaGCTCCTTTCAGTATCTTAT +
Preference number: 4 (lower is better)
Translates to: QLICLRWENAYRSTLLNLMNHPL*LLSVSY
Trigger: ATAAGATACTGAAAGGAGTCACAAGGGATGGTTCAT...CAGATTCAGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR CCA 90 bp GGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCTTAACATCTAATGCTCTTATATGCTTGAGATaGGAAAATGCATACAGATCA +
Preference number: 4 (lower is better)
Translates to: GKSKLRRGFYTLVLTSNALICLR*ENAYRS
Trigger: TGATCTGTATGCATTTTCCCATCTCAAGCATATAAG...AGCATTAGATGTTAAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR CCA 90 bp CAACTTATATGCTTGAGATGGGAAAATGCATACAGATCAACTTTACTGAATCTGAAGCAAGCTCAGACGTaGTTTTTACACATTAGTCTT +
Preference number: 4 (lower is better)
Translates to: QLICLRWENAYRSTLLNLKQAQT*FLHISL
Trigger: AAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTT...CAGATTCAGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR CAA 90 bp AGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTCATGGGGCCGCCATCTaGAGAGCCCGGTCGTCTTCG +
Preference number: 5 (lower is better)
Translates to: RPAQNASISRSFQRCRSTHGAAI*RARSSS
Trigger: CGAAGACGACCGGGCTCTCAAGATGGCGGCCCCATG...AGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000418587.6
ENST00000446148.6
CDS-3UTR CAA 90 bp AAGCAGAGTGTCCAGAGGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCCGTACTGGGCGGTTTaGCCCGTTCCGCATCTTCAG +
Preference number: 5 (lower is better)
Translates to: KQSVQREKQAQTWFLHISPYWAV*PVPHLQ
Trigger: CTGAAGATGCGGAACGGGCAAAACCGCCCAGTACGG...ACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000446148.6
CDS-3UTR CAA 90 bp GGGAGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAGCATCTTCAGAGGCTTaGTTCAGGAAGCAACATGGC +
Preference number: 5 (lower is better)
Translates to: GRPAQNASISRSFQRCRSASSEA*FRKQHG
Trigger: GCCATGTTGCTTCCTGAACAAAGCCTCTGAAGATGC...TGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000446148.6
CDS-3UTR CAA 90 bp AACCCAAGGCCATCTGGCCTCAGTGCCAATGTTTTTCAGCTCCAAGTTCCCAGTGCCTCAGTCACTGTTTaGCTGTTAACAAATGTGACC +
Preference number: 5 (lower is better)
Translates to: NPRPSGLSANVFQLQVPSASVTV*LLTNVT
Trigger: GGTCACATTTGTTAACAGCAAAACAGTGACTGAGGC...ACTGGGAACTTGGAGCTGAAAAACATTGGCACTGAGGCCAGATGGCCTTGGGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR CAA 90 bp AGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTGCATCTTCAGAGGCTTaGTTCAGGAAGCAACATGGC +
Preference number: 5 (lower is better)
Translates to: RPAQNASISRSFQRCRSTASSEA*FRKQHG
Trigger: GCCATGTTGCTTCCTGAACAAAGCCTCTGAAGATGC...AGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000446148.6
CDS-3UTR CAA 90 bp AAGCAGAGTGTCCAGAGGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTGCATCTTCAGAGGCTTaGTTCAGGAAGCAACATGGC +
Preference number: 5 (lower is better)
Translates to: KQSVQREKQAQTWFLHISASSEA*FRKQHG
Trigger: GCCATGTTGCTTCCTGAACAAAGCCTCTGAAGATGC...ACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000446148.6
CDS-3UTR CAA 90 bp AGACCTGCTCAAAATGCATCAATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTGTTACTCTTCCTGTCTaGTCTCCCATCTGCCTGATA +
Preference number: 5 (lower is better)
Translates to: RPAQNASISRSFQRCRSTVTLPV*SPICLI
Trigger: TATCAGGCAGATGGGAGACAAGACAGGAAGAGTAAC...AGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000418587.6
ENST00000446148.6
CDS-3UTR CAA 90 bp AACCCAAGGCCATCTGGCCTCAGTGCCAATGTTTTTCAGCTCCAAGTTCCCAGTGGTCAACTTATATGCTaGAGATGGGAAAATGCATAC +
Preference number: 5 (lower is better)
Translates to: NPRPSGLSANVFQLQVPSGQLIC*RWENAY
Trigger: GTATGCATTTTCCCATCTCAAGCATATAAGTTGACC...ACTGGGAACTTGGAGCTGAAAAACATTGGCACTGAGGCCAGATGGCCTTGGGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR CAA 90 bp AAGCAGAGTGTCCAGAGGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTGCTCCAAGTTCCCAGTaGGGAAGAGTAAAAGGGAGA +
Preference number: 5 (lower is better)
Translates to: KQSVQREKQAQTWFLHISAPSSQ*GRVKGR
Trigger: TCTCCCTTTTACTCTTCCCAACTGGGAACTTGGAGC...ACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS CCA 90 bp TGCTCTTCCAAAAGGCCAGATGAAGAAGTCTCAGCAGGCACCATGTaGAGGAGGGATCATTCTTTACTCCTCTTGTACCTGGTAAATTTT +
Preference number: 5 (lower is better)
Translates to: CSSKRPDEEVSAGTM*RRDHSLLLLYLVNF
Trigger: AAAATTTACCAGGTACAAGAGGAGTAAAGAATGATCCCTCCTCCACATGGTGCCTGCTGAGACTTCTTCATCTGGCCTTTTGGAAGAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000446148.6
CDS-3UTR CAA 90 bp TCCAAGTTCCCAGTTGGGAAGAGTAAAAGGGAGACCTGCTCAAAATGCATCAATATGATGAGCTGTGACTaGCGGGAGAATGTCTTTCCA +
Preference number: 5 (lower is better)
Translates to: SKFPVGKSKRETCSKCINMMSCD*RENVFP
Trigger: TGGAAAGACATTCTCCCGCAAGTCACAGCTCATCAT...ATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR CAA 90 bp TCCAAGTTCCCAGTTGGGAAGAGTAAAAGGGAGACCTGCTCAAAATGCATCAATGCCTCAGTCACTGTTTaGCTGTTAACAAATGTGACC +
Preference number: 5 (lower is better)
Translates to: SKFPVGKSKRETCSKCINASVTV*LLTNVT
Trigger: GGTCACATTTGTTAACAGCAAAACAGTGACTGAGGC...ATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR CAA 90 bp AAGCAGAGTGTCCAGAGGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTGCCTCAGTCACTGTTTaGCTGTTAACAAATGTGACC +
Preference number: 5 (lower is better)
Translates to: KQSVQREKQAQTWFLHISASVTV*LLTNVT
Trigger: GGTCACATTTGTTAACAGCAAAACAGTGACTGAGGC...ACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR CAA 90 bp ATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAAAATGATGAGCTGTGACTaGCGGGAGAATGTCTTTCCA +
Preference number: 5 (lower is better)
Translates to: ISRSFQRCRSTYMLEMGKMMSCD*RENVFP
Trigger: TGGAAAGACATTCTCCCGCAAGTCACAGCTCATCAT...TTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS TCA 90 bp TCCTTTCAGTATCTTATGATGGAAGGAAACTGTCCCCAAAATACATaGCTGGGAGTTGTGAAGGTTACTCTTCCTGTCTTGTCTCCCATC +
Preference number: 5 (lower is better)
Translates to: SFQYLMMEGNCPQNT*LGVVKVTLPVLSPI
Trigger: GATGGGAGACAAGACAGGAAGAGTAACCTTCACAACTCCCAGTCATGTATTTTGGGGACAGTTTCCTTCCATCATAAGATACTGAAAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000274599.10
ENST00000418587.6
ENST00000446148.6
CDS TCA 90 bp TCCTTTCAGTATCTTATGATGGAAGGAAACTGTCCCCAAAATACATaGCTGGGAGTTGTGAAGGTTACTCTTCTTCCCTTGTCTCCCATC +
Preference number: 5 (lower is better)
Translates to: SFQYLMMEGNCPQNT*LGVVKVTLLPLSPI
Trigger: GATGGGAGACAAGGGAAGAAGAGTAACCTTCACAACTCCCAGTCATGTATTTTGGGGACAGTTTCCTTCCATCATAAGATACTGAAAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394226.2
CDS-3UTR CAA 90 bp TCCAAGTTCCCAGTTGGGAAGAGTAAAAGGGAGACCTGCTCAAAATGCATCAATTTCTCAAGATTAGAATaGGGCTCACTCTGGCTAGAT +
Preference number: 5 (lower is better)
Translates to: SKFPVGKSKRETCSKCINFSRLE*GSLWLD
Trigger: ATCTAGCCAGAGTGAGCCCAATTCTAATCTTGAGAA...ATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR CAA 90 bp AAGCAGAGTGTCCAGAGGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTTTCTCAAGATTAGAATaGGGCTCACTCTGGCTAGAT +
Preference number: 5 (lower is better)
Translates to: KQSVQREKQAQTWFLHISFSRLE*GSLWLD
Trigger: ATCTAGCCAGAGTGAGCCCAATTCTAATCTTGAGAA...ACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR CAA 90 bp TTCTCCCAGAAAAGCTGTATCTTCCTGACCCTAAGGTTTTGTTCATATACTCTCGCCTCAGTCACTGTTTaGCTGTTAACAAATGTGACC +
Preference number: 5 (lower is better)
Translates to: FSQKSCIFLTLRFCSYTLASVTV*LLTNVT
Trigger: GGTCACATTTGTTAACAGCAAAACAGTGACTGAGGC...GAGAGTATATGAACAAAACCTTAGGGTCAGGAAGATACAGCTTTTCTGGGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427179.5
CDS-3UTR CAA 90 bp TCCAAGTTCCCAGTTGGGAAGAGTAAAAGGGAGACCTGCTCAAAATGCATCAATCTAGGAGAAGTATGTTaGCCTAAAGTCACACAATCT +
Preference number: 5 (lower is better)
Translates to: SKFPVGKSKRETCSKCINLGEVC*PKVTQS
Trigger: AGATTGTGTGACTTTAGGCAAACATACTTCTCCTAG...ATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR CAA 90 bp TGCCTCAGTCACTGTTTTGCTGTTAACAAATGTGACCTGCCTGAAGAGTTTGTCTCAGAGCAGTTACAGTaGCATGCTCTGAAAAATGTT +
Preference number: 5 (lower is better)
Translates to: CLSHCFAVNKCDLPEEFVSEQLQ*HALKNV
Trigger: AACATTTTTCAGAGCATGCAACTGTAACTGCTCTGA...GACAAACTCTTCAGGCAGGTCACATTTGTTAACAGCAAAACAGTGACTGAGGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427179.5
CDS-3UTR CAA 90 bp TTCTCCCAGAAAAGCTGTATCTTCCTGACCCTAAGGTTTTGTTCATATACTCTCCCTGACCCTAAGGTTTaGTTCATATACTCTCTCTCC +
Preference number: 5 (lower is better)
Translates to: FSQKSCIFLTLRFCSYTLPDPKV*FIYSLS
Trigger: GGAGAGAGAGTATATGAACAAAACCTTAGGGTCAGG...GAGAGTATATGAACAAAACCTTAGGGTCAGGAAGATACAGCTTTTCTGGGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427179.5
CDS-3UTR CAA 90 bp ATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAAAGGTCAACTTATATGCTaGAGATGGGAAAATGCATAC +
Preference number: 5 (lower is better)
Translates to: ISRSFQRCRSTYMLEMGKGQLIC*RWENAY
Trigger: GTATGCATTTTCCCATCTCAAGCATATAAGTTGACC...TTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR CAA 90 bp CAACTTATATGCTTGAGATGGGAAAATGCATACAGATCAACTTTACTGAATCTGGTTACTCTTCCTGTCTaGTCTCCCATCTGCCTGATA +
Preference number: 5 (lower is better)
Translates to: QLICLRWENAYRSTLLNLVTLPV*SPICLI
Trigger: TATCAGGCAGATGGGAGACAAGACAGGAAGAGTAAC...CAGATTCAGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000418587.6
ENST00000446148.6
CDS-3UTR CAA 90 bp GGGAAAAGCAAGCTCAGACGTGGTTTTTACACATTAGTCTTAACATCTAATGCTTTCTCAAGATTAGAATaGGGCTCACTCTGGCTAGAT +
Preference number: 5 (lower is better)
Translates to: GKSKLRRGFYTLVLTSNAFSRLE*GSLWLD
Trigger: ATCTAGCCAGAGTGAGCCCAATTCTAATCTTGAGAA...AGCATTAGATGTTAAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR CAA 90 bp TATTACTCCATTGTGAATCTTCTCAAGATTAGAATTGGGCTCACTCTGGCTAGAGCACAGCTTGTGTTCTaGAAAGGAATTTGCCTTCTA +
Preference number: 5 (lower is better)
Translates to: YYSIVNLLKIRIGLTLARAQLVF*KGICLL
Trigger: TAGAAGGCAAATTCCTTTCAAGAACACAAGCTGTGC...TCTAGCCAGAGTGAGCCCAATTCTAATCTTGAGAAGATTCACAATGGAGTAATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427179.5
CDS-3UTR CAA 90 bp ATCTCAAGGTCCTTCCAGAGATGCAGGTCAACTTATATGCTTGAGATGGGAAAACATTCTTTACTCCTCTaGTACCTGGTAAATTTTCCT +
Preference number: 5 (lower is better)
Translates to: ISRSFQRCRSTYMLEMGKHSLLL*YLVNFP
Trigger: AGGAAAATTTACCAGGTACAAGAGGAGTAAAGAATG...TTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000446148.6
CDS-3UTR CAA 90 bp TTCTCCCAGAAAAGCTGTATCTTCCTGACCCTAAGGTTTTGTTCATATACTCTCTTATCTATTGGGATGTaGTCCCCAAGCTTATCAAAT +
Preference number: 5 (lower is better)
Translates to: FSQKSCIFLTLRFCSYTLLSIGM*SPSLSN
Trigger: ATTTGATAAGCTTGGGGACAACATCCCAATAGATAA...GAGAGTATATGAACAAAACCTTAGGGTCAGGAAGATACAGCTTTTCTGGGAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000427179.5
CDS-3UTR CAA 90 bp CAACTTATATGCTTGAGATGGGAAAATGCATACAGATCAACTTTACTGAATCTGGGTCAACTTATATGCTaGAGATGGGAAAATGCATAC +
Preference number: 5 (lower is better)
Translates to: QLICLRWENAYRSTLLNLGQLIC*RWENAY
Trigger: GTATGCATTTTCCCATCTCAAGCATATAAGTTGACC...CAGATTCAGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS-3UTR CAA 90 bp CAACTTATATGCTTGAGATGGGAAAATGCATACAGATCAACTTTACTGAATCTGTTATCTATTGGGATGTaGTCCCCAAGCTTATCAAAT +
Preference number: 5 (lower is better)
Translates to: QLICLRWENAYRSTLLNLLSIGM*SPSLSN
Trigger: ATTTGATAAGCTTGGGGACAACATCCCAATAGATAA...CAGATTCAGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS CAA 72 bp CTGGGCGGTTTTGCCCGTTCCGCATCTTCAGAGGCTTaGTTCAGGAAGCAACATGGCTGCTCCCTGGAGCTG +
Preference number: 6 (lower is better)
Translates to: LGGFARSASSEA*FRKQHGCSLEL
Trigger: CAGCTCCAGGGAGCAGCCATGTTGCTTCCTGAACAAAGCCTCTGAAGATGCGGAACGGGCAAAACCGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000274599.10
ENST00000394226.2
ENST00000418587.6
ENST00000446148.6
CDS TCA 72 bp GTATCAAAACATCCTTCACCGCACACATCCCGCCTCTaGCTCCCAGCTCGATTATCAGGTCCCAAAACCACC +
Preference number: 6 (lower is better)
Translates to: VSKHPSPHTSRL*LPARLSGPKTT
Trigger: GGTGGTTTTGGGACCTGATAATCGAGCTGGGAGTCAGAGGCGGGATGTGTGCGGTGAAGGATGTTTTGATAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000274599.10
ENST00000394226.2
ENST00000418587.6
ENST00000427179.5
ENST00000446148.6
CDS CCA 72 bp AAAAGGCCAGATGAAGAAGTCTCAGCAGGCACCATGTaGAGGAGGGATCATTCTTTACTCCTCTTGTACCTG +
Preference number: 6 (lower is better)
Translates to: KRPDEEVSAGTM*RRDHSLLLLYL
Trigger: CAGGTACAAGAGGAGTAAAGAATGATCCCTCCTCCACATGGTGCCTGCTGAGACTTCTTCATCTGGCCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000446148.6
CDS TCA 72 bp AAGGAAACTGTCCCCAAAATACATGACTGGGAGTTGTaGAGGTTACTCTTCCTGTCTTGTCTCCCATCTGCC +
Preference number: 6 (lower is better)
Translates to: KETVPKIHDWEL*RLLFLSCLPSA
Trigger: GGCAGATGGGAGACAAGACAGGAAGAGTAACCTTCACAACTCCCAGTCATGTATTTTGGGGACAGTTTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000274599.10
ENST00000418587.6
ENST00000446148.6