RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZNF180 (Homo sapiens)

Ensembl gene IDs: ENSG00000167384

Ensembl transcript IDs: ENST00000221327.8, ENST00000391956.8, ENST00000585514.5, ENST00000586637.5, ENST00000587047.1, ENST00000590088.5, ENST00000590366.1, ENST00000591064.1, ENST00000592095.5, ENST00000592140.1, ENST00000592529.5, ENST00000592529.6

Found 238 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCCCACTTGCCCTCTATACTTCCCACGCATTCTCAGTTCTTCATATaGAACCATTTCTGGCCAAAATTTCTAGTTACCTATTTCCAGGAA +
Preference number: 1 (lower is better)
Translates to: AHLPSILPTHSQFFI*NHFWPKFLVTYFQE
Trigger: TTCCTGGAAATAGGTAACTAGAAATTTTGGCCAGAAATGGTTTCATATGAAGAACTGAGAATGCGTGGGAAGTATAGAGGGCAAGTGGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR CCA 90 bp ATTTACTCTTTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTaGCATATGATTTTCTCTGATTCAGGTCTGAGTGCTTTCTGCAAG +
Preference number: 1 (lower is better)
Translates to: IYSLWKKRSNTGSWL*HMIFSDSGLSAFCK
Trigger: CTTGCAGAAAGCACTCAGACCTGAATCAGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAAAGAGTAAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
3UTR CCA 90 bp CAACTTTCAGCTTATTACCTTTCTGGGATCAGAGGCTTCAATATATaGTCATCCACAGGATTCAAATTCATGATTCAAGGGAAAGGTCAG +
Preference number: 1 (lower is better)
Translates to: QLSAYYLSGIRGFNI*SSTGFKFMIQGKGQ
Trigger: CTGACCTTTCCCTTGAATCATGAATTTGAATCCTGTGGATGACCATATATTGAAGCCTCTGATCCCAGAAAGGTAATAAGCTGAAAGTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR TCA 90 bp ACAGCGTACATTCCAAAAAGGAAGGCCCAACATAAACTGAGAAATTaGATAGATACATCCATAATCCCTTTCTATTCTAATCCATACACA +
Preference number: 1 (lower is better)
Translates to: TAYIPKRKAQHKLRN*IDTSIIPFYSNPYT
Trigger: TGTGTATGGATTAGAATAGAAAGGGATTATGGATGTATCTATTCAATTTCTCAGTTTATGTTGGGCCTTCCTTTTTGGAATGTACGCTGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
3UTR CAA 90 bp TGGAACACATCCTTCCCAAGAGATACTGAACCTCTTTCAGACTCATaGAGGGTTCTTCAAAGTGTGGGTCAGTGGTCCCCAAGGGATGCC +
Preference number: 2 (lower is better)
Translates to: WNTSFPRDTEPLSDS*RVLQSVGQWSPRDA
Trigger: GGCATCCCTTGGGGACCACTGACCCACACTTTGAAGAACCCTCAATGAGTCTGAAAGAGGTTCAGTATCTCTTGGGAAGGATGTGTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR-3UTR TCA 90 bp GGGATGAAAATAGACTGGAATTCAGACCACTCTTCTCCCCAGTTTCATCACTTTCTGTCCAGGGTCCTCTaGGCAGGGTTGCAAGTACCC +
Preference number: 2 (lower is better)
Translates to: GMKIDWNSDHSSPQFHHFLSRVL*AGLQVP
Trigger: GGGTACTTGCAACCCTGCTCAGAGGACCCTGGACAG...AAAGTGATGAAACTGGGGAGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR-3UTR TCA 90 bp TTAGGGTCATCTCATAGGGATAGAATTTTGCTAAGGATAACCCCATCAGTTACCTTAGACGGTCAGCACTaGGCCAGGGAAGCACCCTTC +
Preference number: 2 (lower is better)
Translates to: LGSSHRDRILLRITPSVTLDGQH*AREAPF
Trigger: GAAGGGTGCTTCCCTGGCTCAGTGCTGACCGTCTAA...GGTAACTGATGGGGTTATCCTTAGCAAAATTCTATCCCTATGAGATGACCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR-3UTR GCA 90 bp GGGATGAAAATAGACTGGAATTCAGACCACTCTTCTCCCCAGTTTCATCACTTTTCCTCTGAGCAGGGTTaGAAGTACCCTGTTCCTCCC +
Preference number: 2 (lower is better)
Translates to: GMKIDWNSDHSSPQFHHFSSEQG*KYPVPP
Trigger: GGGAGGAACAGGGTACTTGCAACCCTGCTCAGAGGA...AAAGTGATGAAACTGGGGAGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR CAA 90 bp GGTCAGAGACCCAGTGTCTTCTCCCTCGACTTTGATGATAATCTCTaGAGGAAGGAAAGAATCCTGGACATGAGGTCTTTTTGGGTCTTC +
Preference number: 2 (lower is better)
Translates to: GQRPSVFSLDFDDNL*RKERILDMRSFWVF
Trigger: GAAGACCCAAAAAGACCTCATGTCCAGGATTCTTTCCTTCCTCAAGAGATTATCATCAAAGTCGAGGGAGAAGACACTGGGTCTCTGACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000592095.5
3UTR-3UTR TCA 90 bp AGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTGATTCAGGTCTGAAGTTCACTCCTTCCTaGGATGGGATGGTCAGAGAC +
Preference number: 2 (lower is better)
Translates to: RSNTGSWLWHMIFSDSGLKFTPS*DGMVRD
Trigger: GTCTCTGACCATCCCATCTCAGGAAGGAGTGAACTT...CAGACCTGAATCAGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000592095.5
3UTR-3UTR GCA 90 bp TACTCTTTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTCCTCTGAGCAGGGTTaGAAGTACCCTGTTCCTCCC +
Preference number: 2 (lower is better)
Translates to: YSLWKKRSNTGSWLWHMISSEQG*KYPVPP
Trigger: GGGAGGAACAGGGTACTTGCAACCCTGCTCAGAGGA...AATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAAAGAGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR-3UTR CCA 90 bp AGGGAAGCACCCTTCTATTCAGAGGACTCTCACATCAGGGAACATATCCCAGAGACTGGCAGTTGGCTTTaGCATATGATTTTCTCTGAT +
Preference number: 2 (lower is better)
Translates to: REAPFYSEDSHIREHIPETGSWL*HMIFSD
Trigger: ATCAGAGAAAATCATATGCCAAAGCCAACTGCCAGT...CTCTGGGATATGTTCCCTGATGTGAGAGTCCTCTGAATAGAAGGGTGCTTCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR-3UTR GCA 90 bp TATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCAACATAAACTGAGAGTGGTCCCCAAGGGATaGCCGCAGCTTTCAGTATTT +
Preference number: 2 (lower is better)
Translates to: YHSITAYIPKRKAQHKLRVVPKG*PQLSVF
Trigger: AAATACTGAAAGCTGCGGGCATCCCTTGGGGACCAC...TCTCAGTTTATGTTGGGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR-3UTR CCA 90 bp ACAAATTTGAGACACACAATTAACAGAGGGCTGGAAGTTTTCCCACATATATTGGGGTTCTTCAAAGTGTaGGTCAGTGGTCCCCAAGGG +
Preference number: 2 (lower is better)
Translates to: TNLRHTINRGLEVFPHILGFFKV*VSGPQG
Trigger: CCCTTGGGGACCACTGACCCACACTTTGAAGAACCC...CAATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTGTGTGTCTCAAATTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR-3UTR CCA 90 bp TCCAACTGGTCTTTACAATCATCCACTTCTTCACATGAAGATAACCAAGGATCAGACATGAGGTCTTTTTaGGTCTTCTGGGCCAGCCCA +
Preference number: 2 (lower is better)
Translates to: SNWSLQSSTSSHEDNQGSDMRSF*VFWASP
Trigger: TGGGCTGGCCCAGAAGACCCAAAAAGACCTCATGTC...TGATCCTTGGTTATCTTCATGTGAAGAAGTGGATGATTGTAAAGACCAGTTGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000592095.5
3UTR-3UTR TCA 90 bp AACATCAGCAACTGTTTTCCCAGACCTGACACTGCCAGGTGTGCAACAATCTCTTCTCAGTTCTTCATATaGAACCATTTCTGGCCAAAA +
Preference number: 2 (lower is better)
Translates to: NISNCFPRPDTARCATISSQFFI*NHFWPK
Trigger: TTTTGGCCAGAAATGGTTTCATATGAAGAACTGAGA...AGAGATTGTTGCACACCTGGCAGTGTCAGGTCTGGGAAAACAGTTGCTGATGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR-3UTR CCA 90 bp TACTCTTTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTCTTCCTGAGATGGGATaGTCAGAGACCCAGTGTCTT +
Preference number: 2 (lower is better)
Translates to: YSLWKKRSNTGSWLWHMILPEMG*SETQCL
Trigger: AAGACACTGGGTCTCTGACCATCCCATCTCAGGAAG...AATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAAAGAGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000592095.5
3UTR-3UTR TCA 90 bp AGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTGATTCAGGTCTGGTAAGGGAGGAACTATaGGAGGTTTCACTACATTTA +
Preference number: 2 (lower is better)
Translates to: RSNTGSWLWHMIFSDSGLVREEL*EVSLHL
Trigger: TAAATGTAGTGAAACCTCTCATAGTTCCTCCCTTAC...CAGACCTGAATCAGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR-3UTR CCA 90 bp AGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTGATTCAGGTCTGGGGATGAAAATAGACTaGAATTCAGACCACTCTTCT +
Preference number: 2 (lower is better)
Translates to: RSNTGSWLWHMIFSDSGLGMKID*NSDHSS
Trigger: AGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCC...CAGACCTGAATCAGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR-3UTR TCA 90 bp TATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCAACATAAACTGAGATCTCTGATTCAGGTCTaGGTGCTTTCTGCAAGGAAA +
Preference number: 2 (lower is better)
Translates to: YHSITAYIPKRKAQHKLRSLIQV*VLSARK
Trigger: TTTCCTTGCAGAAAGCACTCAGACCTGAATCAGAGA...TCTCAGTTTATGTTGGGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
3UTR-3UTR TCA 90 bp TATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCAACATAAACTGAGACCACAGTCACAATTTTaGAGTTCACTCCTTCCTGAG +
Preference number: 2 (lower is better)
Translates to: YHSITAYIPKRKAQHKLRPQSQF*SSLLPE
Trigger: CTCAGGAAGGAGTGAACTTCAAAATTGTGACTGTGG...TCTCAGTTTATGTTGGGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR-3UTR TCA 90 bp TCTTGTTTTTCCTGTTGCTTCTCCAACTGGTCTTTACAATCATCCACTTCTTCACCACAGTCACAATTTTaGAGTTCACTCCTTCCTGAG +
Preference number: 2 (lower is better)
Translates to: SCFSCCFSNWSLQSSTSSPQSQF*SSLLPE
Trigger: CTCAGGAAGGAGTGAACTTCAAAATTGTGACTGTGG...TGAAGAAGTGGATGATTGTAAAGACCAGTTGGAGAAGCAACAGGAAAAACAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR-3UTR CCA 90 bp TATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTCTTTTTGGGTCTTCTaGGCCAGCCCATTGCAGCTA +
Preference number: 2 (lower is better)
Translates to: YKIFTCNNSKCCKEQITSSFWVF*ASPLQL
Trigger: TAGCTGCAATGGGCTGGCCCAGAAGACCCAAAAAGA...GCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000592095.5
3UTR-3UTR TCA 90 bp TTAGGGTCATCTCATAGGGATAGAATTTTGCTAAGGATAACCCCATCAGTTACCGCATATGATTTTCTCTaGTTCAGGTCTGAGTGCTTT +
Preference number: 2 (lower is better)
Translates to: LGSSHRDRILLRITPSVTAYDFL*FRSECF
Trigger: AAAGCACTCAGACCTGAATCAGAGAAAATCATATGC...GGTAACTGATGGGGTTATCCTTAGCAAAATTCTATCCCTATGAGATGACCCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR-3UTR TCA 90 bp TGTATATGGAATTGCCAGGTTGAAAAGTCGTTCATAGACTTTCCCCCTTTCTTTAAAGAATCCTGGACATaGGGTCTTTTTGGGTCTTCT +
Preference number: 2 (lower is better)
Translates to: CIWNCQVEKSFIDFPPFFKESWT*GLFGSS
Trigger: AGAAGACCCAAAAAGACCTCATGTCCAGGATTCTTT...AAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000592095.5
3UTR-3UTR GCA 90 bp CAGTATTTCACACTCCATGAAAACATCAGCAACTGTTTTCCCAGACCTGACACTCATTGTATATGGAATTaGCAGGTTGAAAAGTCGTTC +
Preference number: 2 (lower is better)
Translates to: QYFTLHENISNCFPRPDTHCIWN*QVEKSF
Trigger: GAACGACTTTTCAACCTGGCAATTCCATATACAATG...AGTGTCAGGTCTGGGAAAACAGTTGCTGATGTTTTCATGGAGTGTGAAATACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR-3UTR GCA 90 bp GGGATGAAAATAGACTGGAATTCAGACCACTCTTCTCCCCAGTTTCATCACTTTCATTGTATATGGAATTaGCAGGTTGAAAAGTCGTTC +
Preference number: 2 (lower is better)
Translates to: GMKIDWNSDHSSPQFHHFHCIWN*QVEKSF
Trigger: GAACGACTTTTCAACCTGGCAATTCCATATACAATG...AAAGTGATGAAACTGGGGAGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR-3UTR GCA 90 bp GAACTTTGTTCAACTGTCTTAGGAAAAGACCATTGCAGGGGCACAGTCTTTCAATGTAACAACAGCAAGTaGTGTAAGGAACAGATTACA +
Preference number: 2 (lower is better)
Translates to: ELCSTVLGKDHCRGTVFQCNNSK*CKEQIT
Trigger: TGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACA...TTGAAAGACTGTGCCCCTGCAATGGTCTTTTCCTAAGACAGTTGAACAAAGTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR-3UTR CCA 90 bp GGGATGAAAATAGACTGGAATTCAGACCACTCTTCTCCCCAGTTTCATCACTTTCAATTAACAGAGGGCTaGAAGTTTTCCCACATATAT +
Preference number: 2 (lower is better)
Translates to: GMKIDWNSDHSSPQFHHFQLTEG*KFSHIY
Trigger: ATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTG...AAAGTGATGAAACTGGGGAGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR-3UTR TCA 90 bp TATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCAACATAAACTGAGAATGGAATTGCCAGGTTaGAAAGTCGTTCATAGACTT +
Preference number: 2 (lower is better)
Translates to: YHSITAYIPKRKAQHKLRMELPG*KVVHRL
Trigger: AAGTCTATGAACGACTTTTCAACCTGGCAATTCCAT...TCTCAGTTTATGTTGGGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
3UTR-3UTR TCA 90 bp TCCAACTGGTCTTTACAATCATCCACTTCTTCACATGAAGATAACCAAGGATCAATGGAATTGCCAGGTTaGAAAGTCGTTCATAGACTT +
Preference number: 2 (lower is better)
Translates to: SNWSLQSSTSSHEDNQGSMELPG*KVVHRL
Trigger: AAGTCTATGAACGACTTTTCAACCTGGCAATTCCAT...TGATCCTTGGTTATCTTCATGTGAAGAAGTGGATGATTGTAAAGACCAGTTGGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR-3UTR TCA 90 bp TTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTATGGAATTGCCAGGTTaGAAAGTCGTTCATAGACTT +
Preference number: 2 (lower is better)
Translates to: LWKKRSNTGSWLWHMIFSMELPG*KVVHRL
Trigger: AAGTCTATGAACGACTTTTCAACCTGGCAATTCCAT...AGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
3UTR-3UTR TCA 90 bp TACTCTTTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTGCATATGATTTTCTCTaGTTCAGGTCTGAGTGCTTT +
Preference number: 2 (lower is better)
Translates to: YSLWKKRSNTGSWLWHMIAYDFL*FRSECF
Trigger: AAAGCACTCAGACCTGAATCAGAGAAAATCATATGC...AATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAAAGAGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
3UTR-3UTR TCA 90 bp TATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCAACATAAACTGAGAGCATATGATTTTCTCTaGTTCAGGTCTGAGTGCTTT +
Preference number: 2 (lower is better)
Translates to: YHSITAYIPKRKAQHKLRAYDFL*FRSECF
Trigger: AAAGCACTCAGACCTGAATCAGAGAAAATCATATGC...TCTCAGTTTATGTTGGGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
3UTR-3UTR TCA 90 bp TCCAACTGGTCTTTACAATCATCCACTTCTTCACATGAAGATAACCAAGGATCATTGATGATAATCTCTTaGGGAAGGAAAGAATCCTGG +
Preference number: 2 (lower is better)
Translates to: SNWSLQSSTSSHEDNQGSLMIIS*GRKESW
Trigger: CCAGGATTCTTTCCTTCCTCAAGAGATTATCATCAA...TGATCCTTGGTTATCTTCATGTGAAGAAGTGGATGATTGTAAAGACCAGTTGGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000592095.5
3UTR-3UTR GCA 90 bp GCATATATGAAAATAAGCCCACTTGCCCTCTATACTTCCCACGCATTCTCAGTTGTAGTAATCTGCTCATaGTATTCCAAACATAAACCT +
Preference number: 2 (lower is better)
Translates to: AYMKISPLALYTSHAFSVVVICS*YSKHKP
Trigger: AGGTTTATGTTTGGAATAGCATGAGCAGATTACTAC...AACTGAGAATGCGTGGGAAGTATAGAGGGCAAGTGGGCTTATTTTCATATATGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR-3UTR CCA 90 bp CAGTATTTCACACTCCATGAAAACATCAGCAACTGTTTTCCCAGACCTGACACTTTAACCTCTATTATCTaGTCTCTCAGTTCAACTTTC +
Preference number: 2 (lower is better)
Translates to: QYFTLHENISNCFPRPDTLTSII*SLSSTF
Trigger: GAAAGTTGAACTGAGAGACCAGATAATAGAGGTTAA...AGTGTCAGGTCTGGGAAAACAGTTGCTGATGTTTTCATGGAGTGTGAAATACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR-3UTR CCA 90 bp TGTATATGGAATTGCCAGGTTGAAAAGTCGTTCATAGACTTTCCCCCTTTCTTTTGTTGCTTCTCCAACTaGTCTTTACAATCATCCACT +
Preference number: 2 (lower is better)
Translates to: CIWNCQVEKSFIDFPPFFCCFSN*SLQSST
Trigger: AGTGGATGATTGTAAAGACCAGTTGGAGAAGCAACA...AAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR-3UTR TCA 90 bp TGTATATGGAATTGCCAGGTTGAAAAGTCGTTCATAGACTTTCCCCCTTTCTTTGTATTTCACACTCCATaGAAACATCAGCAACTGTTT +
Preference number: 2 (lower is better)
Translates to: CIWNCQVEKSFIDFPPFFVFHTP*KHQQLF
Trigger: AAACAGTTGCTGATGTTTTCATGGAGTGTGAAATAC...AAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR-3UTR GCA 90 bp TATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCAACATAAACTGAGACATTGTATATGGAATTaGCAGGTTGAAAAGTCGTTC +
Preference number: 2 (lower is better)
Translates to: YHSITAYIPKRKAQHKLRHCIWN*QVEKSF
Trigger: GAACGACTTTTCAACCTGGCAATTCCATATACAATG...TCTCAGTTTATGTTGGGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
3UTR-3UTR GCA 90 bp TGTATATGGAATTGCCAGGTTGAAAAGTCGTTCATAGACTTTCCCCCTTTCTTTTGTAACAACAGCAAGTaGTGTAAGGAACAGATTACA +
Preference number: 2 (lower is better)
Translates to: CIWNCQVEKSFIDFPPFFCNNSK*CKEQIT
Trigger: TGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACA...AAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
3UTR-3UTR GCA 90 bp TGTATATGGAATTGCCAGGTTGAAAAGTCGTTCATAGACTTTCCCCCTTTCTTTGTGAATGCCACTTCCTaGAAAAGTATCTCTTGTTTT +
Preference number: 2 (lower is better)
Translates to: CIWNCQVEKSFIDFPPFFVNATS*KSISCF
Trigger: AAAACAAGAGATACTTTTGCAGGAAGTGGCATTCAC...AAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR-3UTR GCA 90 bp TATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCAACATAAACTGAGATTTCCTTTGAGTGAATaGCACTTCCTGCAAAAGTAT +
Preference number: 2 (lower is better)
Translates to: YHSITAYIPKRKAQHKLRFPLSE*HFLQKY
Trigger: ATACTTTTGCAGGAAGTGGCATTCACTCAAAGGAAA...TCTCAGTTTATGTTGGGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR-3UTR CCA 90 bp TGTATATGGAATTGCCAGGTTGAAAAGTCGTTCATAGACTTTCCCCCTTTCTTTCAATTAACAGAGGGCTaGAAGTTTTCCCACATATAT +
Preference number: 2 (lower is better)
Translates to: CIWNCQVEKSFIDFPPFFQLTEG*KFSHIY
Trigger: ATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTG...AAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
3UTR-3UTR CCA 90 bp TACTCTTTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTCAATTAACAGAGGGCTaGAAGTTTTCCCACATATAT +
Preference number: 2 (lower is better)
Translates to: YSLWKKRSNTGSWLWHMIQLTEG*KFSHIY
Trigger: ATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTG...AATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAAAGAGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
3UTR-3UTR CCA 90 bp TATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCAACATAAACTGAGACTTCACTCCATTAGCTaGTTCTTCATCAAAAATCCT +
Preference number: 2 (lower is better)
Translates to: YHSITAYIPKRKAQHKLRLHSIS*FFIKNP
Trigger: AGGATTTTTGATGAAGAACCAGCTAATGGAGTGAAG...TCTCAGTTTATGTTGGGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR-3UTR TCA 90 bp ACTCATTATATCATTTATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCATGGAATTGCCAGGTTaGAAAGTCGTTCATAGACTT +
Preference number: 2 (lower is better)
Translates to: THYIIYHSITAYIPKRKAMELPG*KVVHRL
Trigger: AAGTCTATGAACGACTTTTCAACCTGGCAATTCCAT...GGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATAAATGATATAATGAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
3UTR-3UTR TCA 90 bp ACTCATTATATCATTTATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCGCATATGATTTTCTCTaGTTCAGGTCTGAGTGCTTT +
Preference number: 2 (lower is better)
Translates to: THYIIYHSITAYIPKRKAAYDFL*FRSECF
Trigger: AAAGCACTCAGACCTGAATCAGAGAAAATCATATGC...GGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATAAATGATATAATGAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
3UTR-3UTR TCA 90 bp ATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTGCATATGATTTTCTCTaGTTCAGGTCTGAGTGCTTT +
Preference number: 2 (lower is better)
Translates to: IKSSHVTTASAVRNRLQAAYDFL*FRSECF
Trigger: AAAGCACTCAGACCTGAATCAGAGAAAATCATATGC...AGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
3UTR-3UTR TCA 90 bp TATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCCCATGGCAAAAAGATTaGATACGGTCACTAAATCCA +
Preference number: 2 (lower is better)
Translates to: YKIFTCNNSKCCKEQITSPWQKD*IRSLNP
Trigger: TGGATTTAGTGACCGTATTCAATCTTTTTGCCATGG...GCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTATA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR-3UTR TCA 90 bp ACTCATTATATCATTTATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCCATGGCAAAAAGATTaGATACGGTCACTAAATCCA +
Preference number: 2 (lower is better)
Translates to: THYIIYHSITAYIPKRKAPWQKD*IRSLNP
Trigger: TGGATTTAGTGACCGTATTCAATCTTTTTGCCATGG...GGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATAAATGATATAATGAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR-3UTR GCA 90 bp AAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTATCATTGTATATGGAATTaGCAGGTTGAAAAGTCGTTC +
Preference number: 2 (lower is better)
Translates to: KIFTCNNSKCCKEQITSYHCIWN*QVEKSF
Trigger: GAACGACTTTTCAACCTGGCAATTCCATATACAATG...ATAGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
3UTR-3UTR GCA 90 bp TATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCCATTGTATATGGAATTaGCAGGTTGAAAAGTCGTTC +
Preference number: 2 (lower is better)
Translates to: YKIFTCNNSKCCKEQITSHCIWN*QVEKSF
Trigger: GAACGACTTTTCAACCTGGCAATTCCATATACAATG...GCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
3UTR-3UTR GCA 90 bp TATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTGTAACAACAGCAAGTaGTGTAAGGAACAGATTACA +
Preference number: 2 (lower is better)
Translates to: YKIFTCNNSKCCKEQITSCNNSK*CKEQIT
Trigger: TGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACA...GCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
3UTR-3UTR GCA 90 bp TATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCGTGAATGCCACTTCCTaGAAAAGTATCTCTTGTTTT +
Preference number: 2 (lower is better)
Translates to: YKIFTCNNSKCCKEQITSVNATS*KSISCF
Trigger: AAAACAAGAGATACTTTTGCAGGAAGTGGCATTCAC...GCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR-3UTR CCA 90 bp ACTCATTATATCATTTATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCAATTAACAGAGGGCTaGAAGTTTTCCCACATATAT +
Preference number: 2 (lower is better)
Translates to: THYIIYHSITAYIPKRKAQLTEG*KFSHIY
Trigger: ATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTG...GGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATAAATGATATAATGAGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
3UTR-3UTR CCA 90 bp TATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCGTGTGCAACAATCTCTaGATTAATCCTCATAGAGAT +
Preference number: 2 (lower is better)
Translates to: YKIFTCNNSKCCKEQITSVCNNL*INPHRD
Trigger: ATCTCTATGAGGATTAATCCAGAGATTGTTGCACAC...GCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR-3UTR CCA 90 bp ACTCATTATATCATTTATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCTTCACTCCATTAGCTaGTTCTTCATCAAAAATCCT +
Preference number: 2 (lower is better)
Translates to: THYIIYHSITAYIPKRKALHSIS*FFIKNP
Trigger: AGGATTTTTGATGAAGAACCAGCTAATGGAGTGAAG...GGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATAAATGATATAATGAGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR CCA 72 bp CAACCCCACTGGCCATGTAAGACTAGGCCTGGAGCCTaGAACACATCCTTCCCAAGAGATACTGAACCTCTT +
Preference number: 3 (lower is better)
Translates to: QPHWPCKTRPGA*NTSFPRDTEPL
Trigger: AAGAGGTTCAGTATCTCTTGGGAAGGATGTGTTCCAGGCTCCAGGCCTAGTCTTACATGGCCAGTGGGGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR CCA 72 bp TTGAGGAAGGAAAGAATCCTGGACATGAGGTCTTTTTaGGTCTTCTGGGCCAGCCCATTGCAGCTAAATGCA +
Preference number: 3 (lower is better)
Translates to: LRKERILDMRSF*VFWASPLQLNA
Trigger: TGCATTTAGCTGCAATGGGCTGGCCCAGAAGACCCAAAAAGACCTCATGTCCAGGATTCTTTCCTTCCTCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000592095.5
3UTR-3UTR CAA 90 bp AGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTGATTCAGGTCTGGACAGACTTGGAACTTaGTTCAACTGTCTTAGGAAA +
Preference number: 3 (lower is better)
Translates to: RSNTGSWLWHMIFSDSGLDRLGT*FNCLRK
Trigger: TTTCCTAAGACAGTTGAACAAAGTTCCAAGTCTGTC...CAGACCTGAATCAGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR CCA 72 bp TTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTaGCATATGATTTTCTCTGATTCAGGTCTGAGTGCT +
Preference number: 3 (lower is better)
Translates to: LWKKRSNTGSWL*HMIFSDSGLSA
Trigger: AGCACTCAGACCTGAATCAGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
3UTR-3UTR CAA 90 bp CAGTATTTCACACTCCATGAAAACATCAGCAACTGTTTTCCCAGACCTGACACTCATAGGGATAGAATTTaGCTAAGGATAACCCCATCA +
Preference number: 3 (lower is better)
Translates to: QYFTLHENISNCFPRPDTHRDRI*LRITPS
Trigger: TGATGGGGTTATCCTTAGCAAAATTCTATCCCTATG...AGTGTCAGGTCTGGGAAAACAGTTGCTGATGTTTTCATGGAGTGTGAAATACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR-3UTR CAA 90 bp TGTATATGGAATTGCCAGGTTGAAAAGTCGTTCATAGACTTTCCCCCTTTCTTTCCTCTTTCAGACTCATaGAGGGTTCTTCAAAGTGTG +
Preference number: 3 (lower is better)
Translates to: CIWNCQVEKSFIDFPPFFPLSDS*RVLQSV
Trigger: CACACTTTGAAGAACCCTCAATGAGTCTGAAAGAGG...AAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR CCA 72 bp GCTTATTACCTTTCTGGGATCAGAGGCTTCAATATATaGTCATCCACAGGATTCAAATTCATGATTCAAGGG +
Preference number: 3 (lower is better)
Translates to: AYYLSGIRGFNI*SSTGFKFMIQG
Trigger: CCCTTGAATCATGAATTTGAATCCTGTGGATGACCATATATTGAAGCCTCTGATCCCAGAAAGGTAATAAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR-3UTR CAA 90 bp AAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTATTTTTTCCAACTGCAGTaGCCAAGTCCCAAGAGACTA +
Preference number: 3 (lower is better)
Translates to: KIFTCNNSKCCKEQITSYFFQLQ*PSPKRL
Trigger: TAGTCTCTTGGGACTTGGCAACTGCAGTTGGAAAAA...ATAGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTT
39% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR-3UTR CAA 90 bp TATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCAACATAAACTGAGAACCATGGCAAAAAGATaGAATACGGTCACTAAATCC +
Preference number: 3 (lower is better)
Translates to: YHSITAYIPKRKAQHKLRTMAKR*NTVTKS
Trigger: GGATTTAGTGACCGTATTCAATCTTTTTGCCATGGT...TCTCAGTTTATGTTGGGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
3UTR-3UTR CAA 90 bp TCTTGTTTTTCCTGTTGCTTCTCCAACTGGTCTTTACAATCATCCACTTCTTCATTTGATGATAATCTCTaGAGGAAGGAAAGAATCCTG +
Preference number: 3 (lower is better)
Translates to: SCFSCCFSNWSLQSSTSSFDDNL*RKERIL
Trigger: CAGGATTCTTTCCTTCCTCAAGAGATTATCATCAAA...TGAAGAAGTGGATGATTGTAAAGACCAGTTGGAGAAGCAACAGGAAAAACAAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000592095.5
3UTR TCA 72 bp GAATCAAGTTTAACATTGTATATGGAATTGCCAGGTTaGAAAGTCGTTCATAGACTTTCCCCCTTTCTTTTC +
Preference number: 3 (lower is better)
Translates to: ESSLTLYMELPG*KVVHRLSPFLF
Trigger: GAAAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACAATGTTAAACTTGATTC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
ENST00000592529.5
CDS-3UTR CCA 90 bp CCTTTCTGGGATCAGAGGCTTCAATATATGGTCATCCACAGGATTCAAATTCATAACCTGGGCGTCCGCTaGCCCGCAGCCCAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: PFWDQRLQYMVIHRIQIHNLGVR*PAAQAG
Trigger: CCCAGCCTGGGCTGCGGGCCAGCGGACGCCCAGGTT...ATGAATTTGAATCCTGTGGATGACCATATATTGAAGCCTCTGATCCCAGAAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR TCA 90 bp GACACTGCCAGGTGTGCAACAATCTCTGGATTAATCCTCATAGAGATGGCTCCACTGTCCAGGGTCCTCTaGGCAGGGTTGCAAGTACCC +
Preference number: 4 (lower is better)
Translates to: DTARCATISGLILIEMAPLSRVL*AGLQVP
Trigger: GGGTACTTGCAACCCTGCTCAGAGGACCCTGGACAG...TGGAGCCATCTCTATGAGGATTAATCCAGAGATTGTTGCACACCTGGCAGTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR GCA 90 bp AGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTGATTCAGGTCTGCTGTCACCGCCTCAGTaGCTAGCACGGCTCTGCGGC +
Preference number: 4 (lower is better)
Translates to: RSNTGSWLWHMIFSDSGLLSPPQ*LARLCG
Trigger: GCCGCAGAGCCGTGCTAGGCACTGAGGCGGTGACAG...CAGACCTGAATCAGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp TTAGGGTCATCTCATAGGGATAGAATTTTGCTAAGGATAACCCCATCAGTTACCGCCCGCAGCCCAGGCTaGGCCTGTCACCGCCTCAGT +
Preference number: 4 (lower is better)
Translates to: LGSSHRDRILLRITPSVTARSPG*ACHRLS
Trigger: ACTGAGGCGGTGACAGGCCCAGCCTGGGCTGCGGGC...GGTAACTGATGGGGTTATCCTTAGCAAAATTCTATCCCTATGAGATGACCCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR GCA 90 bp CAGTATTTCACACTCCATGAAAACATCAGCAACTGTTTTCCCAGACCTGACACTCCCCTGCCCCGATTCTaGAACACGGCCGACTCGGGT +
Preference number: 4 (lower is better)
Translates to: QYFTLHENISNCFPRPDTPLPRF*NTADSG
Trigger: ACCCGAGTCGGCCGTGTTGCAGAATCGGGGCAGGGG...AGTGTCAGGTCTGGGAAAACAGTTGCTGATGTTTTCATGGAGTGTGAAATACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR GCA 90 bp AGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTGATTCAGGTCTGTGCCTAGCACGGCTCTaGGGCAGGACGAACTCGGGT +
Preference number: 4 (lower is better)
Translates to: RSNTGSWLWHMIFSDSGLCLARL*GRTNSG
Trigger: ACCCGAGTTCGTCCTGCCGCAGAGCCGTGCTAGGCA...CAGACCTGAATCAGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp GAACTTTGTTCAACTGTCTTAGGAAAAGACCATTGCAGGGGCACAGTCTTTCAATCGGACACCAAGCGCTaGCCCACGCCCCTACCAACC +
Preference number: 4 (lower is better)
Translates to: ELCSTVLGKDHCRGTVFQSDTKR*PTPLPT
Trigger: GGTTGGTAGGGGCGTGGGGCAGCGCTTGGTGTCCGA...TTGAAAGACTGTGCCCCTGCAATGGTCTTTTCCTAAGACAGTTGAACAAAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR CCA 90 bp AGGGAAGCACCCTTCTATTCAGAGGACTCTCACATCAGGGAACATATCCCAGAGGGGTTCTTCAAAGTGTaGGTCAGTGGTCCCCAAGGG +
Preference number: 4 (lower is better)
Translates to: REAPFYSEDSHIREHIPEGFFKV*VSGPQG
Trigger: CCCTTGGGGACCACTGACCCACACTTTGAAGAACCC...CTCTGGGATATGTTCCCTGATGTGAGAGTCCTCTGAATAGAAGGGTGCTTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR TCA 90 bp CCTTTCTGGGATCAGAGGCTTCAATATATGGTCATCCACAGGATTCAAATTCATGGCACAGCAGGGTGCTaGGGTCCTGAGCACCGCTTC +
Preference number: 4 (lower is better)
Translates to: PFWDQRLQYMVIHRIQIHGTAGC*GPEHRF
Trigger: GAAGCGGTGCTCAGGACCTCAGCACCCTGCTGTGCC...ATGAATTTGAATCCTGTGGATGACCATATATTGAAGCCTCTGATCCCAGAAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR TCA 90 bp TGTATATGGAATTGCCAGGTTGAAAAGTCGTTCATAGACTTTCCCCCTTTCTTTAGGGTGCTGAGGTCCTaGGCTGCACTGGGCGTCCGC +
Preference number: 4 (lower is better)
Translates to: CIWNCQVEKSFIDFPPFFRVLRS*AALGVR
Trigger: GCGGACGCCCAGTGCAGCTCAGGACCTCAGCACCCT...AAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000592095.5
CDS-3UTR TCA 90 bp GGGATGAAAATAGACTGGAATTCAGACCACTCTTCTCCCCAGTTTCATCACTTTAGGGTGCTGAGGTCCTaGGCTGCACACCGCTTCCAG +
Preference number: 4 (lower is better)
Translates to: GMKIDWNSDHSSPQFHHFRVLRS*AAHRFQ
Trigger: CTGGAAGCGGTGTGCAGCTCAGGACCTCAGCACCCT...AAAGTGATGAAACTGGGGAGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000590088.5
CDS-3UTR GCA 90 bp GCATATATGAAAATAAGCCCACTTGCCCTCTATACTTCCCACGCATTCTCAGTTTTCCCGCGTAGACCCTaGGCATGCGCGCATCGGACA +
Preference number: 4 (lower is better)
Translates to: AYMKISPLALYTSHAFSVFPRRP*ACAHRT
Trigger: TGTCCGATGCGCGCATGCGCAGGGTCTACGCGGGAA...AACTGAGAATGCGTGGGAAGTATAGAGGGCAAGTGGGCTTATTTTCATATATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR GCA 90 bp GACACTGCCAGGTGTGCAACAATCTCTGGATTAATCCTCATAGAGATGGCTCCACATCCTGCTCTTCCATaGTCTCCTCCAGGCACAGCA +
Preference number: 4 (lower is better)
Translates to: DTARCATISGLILIEMAPHPALP*SPPGTA
Trigger: TGCTGTGCCTGGAGGAGAGCATGGAAGAGCAGGATG...TGGAGCCATCTCTATGAGGATTAATCCAGAGATTGTTGCACACCTGGCAGTGTC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR CCA 90 bp AAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTATAACCTGGGCGTCCGCTaGCCCGCAGCCCAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: KIFTCNNSKCCKEQITSYNLGVR*PAAQAG
Trigger: CCCAGCCTGGGCTGCGGGCCAGCGGACGCCCAGGTT...ATAGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
CDS-3UTR CCA 90 bp ATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTAACCTGGGCGTCCGCTaGCCCGCAGCCCAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: IKSSHVTTASAVRNRLQANLGVR*PAAQAG
Trigger: CCCAGCCTGGGCTGCGGGCCAGCGGACGCCCAGGTT...AGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
CDS-3UTR CCA 90 bp GGGATGAAAATAGACTGGAATTCAGACCACTCTTCTCCCCAGTTTCATCACTTTGACCTTCGGGGGCTCTaGGGGCTTCTCATCCTGCTC +
Preference number: 4 (lower is better)
Translates to: GMKIDWNSDHSSPQFHHFDLRGL*GLLILL
Trigger: GAGCAGGATGAGAAGCCCCCAGAGCCCCCGAAGGTC...AAAGTGATGAAACTGGGGAGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
CDS-3UTR TCA 90 bp TTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTGGCACAGCAGGGTGCTaGGGTCCTGAGCACCGCTTC +
Preference number: 4 (lower is better)
Translates to: LWKKRSNTGSWLWHMIFSGTAGC*GPEHRF
Trigger: GAAGCGGTGCTCAGGACCTCAGCACCCTGCTGTGCC...AGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000221327.8
ENST00000391956.8
CDS-3UTR GCA 90 bp CCTTTCTGGGATCAGAGGCTTCAATATATGGTCATCCACAGGATTCAAATTCATTCTGAAGGGCCGAGCTaGTCGGCGACAGCAAGCGTC +
Preference number: 4 (lower is better)
Translates to: PFWDQRLQYMVIHRIQIHSEGPS*SATASV
Trigger: GACGCTTGCTGTCGCCGAGCAGCTCGGCCCTTCAGA...ATGAATTTGAATCCTGTGGATGACCATATATTGAAGCCTCTGATCCCAGAAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR GCA 90 bp TTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTCTGTCACCGCCTCAGTaGCTAGCACGGCTCTGCGGC +
Preference number: 4 (lower is better)
Translates to: LWKKRSNTGSWLWHMIFSLSPPQ*LARLCG
Trigger: GCCGCAGAGCCGTGCTAGGCACTGAGGCGGTGACAG...AGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp TGTATATGGAATTGCCAGGTTGAAAAGTCGTTCATAGACTTTCCCCCTTTCTTTCTGTCACCGCCTCAGTaGCTAGCACGGCTCTGCGGC +
Preference number: 4 (lower is better)
Translates to: CIWNCQVEKSFIDFPPFFLSPPQ*LARLCG
Trigger: GCCGCAGAGCCGTGCTAGGCACTGAGGCGGTGACAG...AAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp TATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCAACATAAACTGAGATCGGACACCAAGCGCTaGCCCACGCCCCTACCAACC +
Preference number: 4 (lower is better)
Translates to: YHSITAYIPKRKAQHKLRSDTKR*PTPLPT
Trigger: GGTTGGTAGGGGCGTGGGGCAGCGCTTGGTGTCCGA...TCTCAGTTTATGTTGGGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
CDS-3UTR CCA 90 bp CAGTATTTCACACTCCATGAAAACATCAGCAACTGTTTTCCCAGACCTGACACTCATCCGCAAGGCCGCTaGGGGTTAAGTCTGAAGGGC +
Preference number: 4 (lower is better)
Translates to: QYFTLHENISNCFPRPDTHPQGR*GLSLKG
Trigger: GCCCTTCAGACTTAACCCCCAGCGGCCTTGCGGATG...AGTGTCAGGTCTGGGAAAACAGTTGCTGATGTTTTCATGGAGTGTGAAATACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR CCA 90 bp CCTTTCTGGGATCAGAGGCTTCAATATATGGTCATCCACAGGATTCAAATTCATGACCTTCGGGGGCTCTaGGGGCTTCTCATCCTGCTC +
Preference number: 4 (lower is better)
Translates to: PFWDQRLQYMVIHRIQIHDLRGL*GLLILL
Trigger: GAGCAGGATGAGAAGCCCCCAGAGCCCCCGAAGGTC...ATGAATTTGAATCCTGTGGATGACCATATATTGAAGCCTCTGATCCCAGAAAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR CCA 90 bp TATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCGGTCCTGAGCTGCACTaGGCGTCCGCTGGCCCGCAG +
Preference number: 4 (lower is better)
Translates to: YKIFTCNNSKCCKEQITSGPELH*ASAGPQ
Trigger: CTGCGGGCCAGCGGACGCCCAGTGCAGCTCAGGACC...GCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000592095.5
CDS-3UTR GCA 90 bp TGTATATGGAATTGCCAGGTTGAAAAGTCGTTCATAGACTTTCCCCCTTTCTTTTCTGAAGGGCCGAGCTaGTCGGCGACAGCAAGCGTC +
Preference number: 4 (lower is better)
Translates to: CIWNCQVEKSFIDFPPFFSEGPS*SATASV
Trigger: GACGCTTGCTGTCGCCGAGCAGCTCGGCCCTTCAGA...AAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp TATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCAACATAAACTGAGATCTGAAGGGCCGAGCTaGTCGGCGACAGCAAGCGTC +
Preference number: 4 (lower is better)
Translates to: YHSITAYIPKRKAQHKLRSEGPS*SATASV
Trigger: GACGCTTGCTGTCGCCGAGCAGCTCGGCCCTTCAGA...TCTCAGTTTATGTTGGGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp TTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTTGCCTAGCACGGCTCTaGGGCAGGACGAACTCGGGT +
Preference number: 4 (lower is better)
Translates to: LWKKRSNTGSWLWHMIFSCLARL*GRTNSG
Trigger: ACCCGAGTTCGTCCTGCCGCAGAGCCGTGCTAGGCA...AGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp TCCAACTGGTCTTTACAATCATCCACTTCTTCACATGAAGATAACCAAGGATCATGCCTAGCACGGCTCTaGGGCAGGACGAACTCGGGT +
Preference number: 4 (lower is better)
Translates to: SNWSLQSSTSSHEDNQGSCLARL*GRTNSG
Trigger: ACCCGAGTTCGTCCTGCCGCAGAGCCGTGCTAGGCA...TGATCCTTGGTTATCTTCATGTGAAGAAGTGGATGATTGTAAAGACCAGTTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp ACAAATTTGAGACACACAATTAACAGAGGGCTGGAAGTTTTCCCACATATATTGTCGGACACCAAGCGCTaGCCCACGCCCCTACCAACC +
Preference number: 4 (lower is better)
Translates to: TNLRHTINRGLEVFPHILSDTKR*PTPLPT
Trigger: GGTTGGTAGGGGCGTGGGGCAGCGCTTGGTGTCCGA...CAATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTGTGTGTCTCAAATTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
CDS-3UTR GCA 90 bp TATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCAACATAAACTGAGACGTAGACCCTGCGCATaGGCGCATCGGACACCAAGC +
Preference number: 4 (lower is better)
Translates to: YHSITAYIPKRKAQHKLRRRPCA*AHRTPS
Trigger: GCTTGGTGTCCGATGCGCGCATGCGCAGGGTCTACG...TCTCAGTTTATGTTGGGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
CDS-3UTR GCA 90 bp TGTATATGGAATTGCCAGGTTGAAAAGTCGTTCATAGACTTTCCCCCTTTCTTTCGTAGACCCTGCGCATaGGCGCATCGGACACCAAGC +
Preference number: 4 (lower is better)
Translates to: CIWNCQVEKSFIDFPPFFRRPCA*AHRTPS
Trigger: GCTTGGTGTCCGATGCGCGCATGCGCAGGGTCTACG...AAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
CDS-3UTR GCA 90 bp TTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTCGTAGACCCTGCGCATaGGCGCATCGGACACCAAGC +
Preference number: 4 (lower is better)
Translates to: LWKKRSNTGSWLWHMIFSRRPCA*AHRTPS
Trigger: GCTTGGTGTCCGATGCGCGCATGCGCAGGGTCTACG...AGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
CDS-3UTR GCA 90 bp GGGATGAAAATAGACTGGAATTCAGACCACTCTTCTCCCCAGTTTCATCACTTTGGGGGCTTCTCATCCTaGTCTTCCATGCTCTCCTCC +
Preference number: 4 (lower is better)
Translates to: GMKIDWNSDHSSPQFHHFGGFSS*SSMLSS
Trigger: GGAGGAGAGCATGGAAGAGCAGGATGAGAAGCCCCC...AAAGTGATGAAACTGGGGAGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp TACTCTTTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTGACCTTCGGGGGCTCTaGGGGCTTCTCATCCTGCTC +
Preference number: 4 (lower is better)
Translates to: YSLWKKRSNTGSWLWHMIDLRGL*GLLILL
Trigger: GAGCAGGATGAGAAGCCCCCAGAGCCCCCGAAGGTC...AATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAAAGAGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp AACATCAGCAACTGTTTTCCCAGACCTGACACTGCCAGGTGTGCAACAATCTCTGTCTTTCAACCCCACTaGCCATGTAAGACTAGGCCT +
Preference number: 4 (lower is better)
Translates to: NISNCFPRPDTARCATISVFQPH*PCKTRP
Trigger: AGGCCTAGTCTTACATGGCCAGTGGGGTTGAAAGAC...AGAGATTGTTGCACACCTGGCAGTGTCAGGTCTGGGAAAACAGTTGCTGATGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221327.8
3UTR CAA 72 bp TCCTTCCCAAGAGATACTGAACCTCTTTCAGACTCATaGAGGGTTCTTCAAAGTGTGGGTCAGTGGTCCCCA +
Preference number: 4 (lower is better)
Translates to: SFPRDTEPLSDS*RVLQSVGQWSP
Trigger: TGGGGACCACTGACCCACACTTTGAAGAACCCTCAATGAGTCTGAAAGAGGTTCAGTATCTCTTGGGAAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR TCA 90 bp AGGGAAGCACCCTTCTATTCAGAGGACTCTCACATCAGGGAACATATCCCAGAGCCACAGTCACAATTTTaGAGTTCACTCCTTCCTGAG +
Preference number: 4 (lower is better)
Translates to: REAPFYSEDSHIREHIPEPQSQF*SSLLPE
Trigger: CTCAGGAAGGAGTGAACTTCAAAATTGTGACTGTGG...CTCTGGGATATGTTCCCTGATGTGAGAGTCCTCTGAATAGAAGGGTGCTTCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR GCA 90 bp TATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCCTGTCACCGCCTCAGTaGCTAGCACGGCTCTGCGGC +
Preference number: 4 (lower is better)
Translates to: YKIFTCNNSKCCKEQITSLSPPQ*LARLCG
Trigger: GCCGCAGAGCCGTGCTAGGCACTGAGGCGGTGACAG...GCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp TTAGGGTCATCTCATAGGGATAGAATTTTGCTAAGGATAACCCCATCAGTTACCGGGGGCTTCTCATCCTaGTCTTCCATGCTCTCCTCC +
Preference number: 4 (lower is better)
Translates to: LGSSHRDRILLRITPSVTGGFSS*SSMLSS
Trigger: GGAGGAGAGCATGGAAGAGCAGGATGAGAAGCCCCC...GGTAACTGATGGGGTTATCCTTAGCAAAATTCTATCCCTATGAGATGACCCTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR CCA 90 bp TCCAACTGGTCTTTACAATCATCCACTTCTTCACATGAAGATAACCAAGGATCACATCCGCAAGGCCGCTaGGGGTTAAGTCTGAAGGGC +
Preference number: 4 (lower is better)
Translates to: SNWSLQSSTSSHEDNQGSHPQGR*GLSLKG
Trigger: GCCCTTCAGACTTAACCCCCAGCGGCCTTGCGGATG...TGATCCTTGGTTATCTTCATGTGAAGAAGTGGATGATTGTAAAGACCAGTTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp ACAAATTTGAGACACACAATTAACAGAGGGCTGGAAGTTTTCCCACATATATTGGACCTTCGGGGGCTCTaGGGGCTTCTCATCCTGCTC +
Preference number: 4 (lower is better)
Translates to: TNLRHTINRGLEVFPHILDLRGL*GLLILL
Trigger: GAGCAGGATGAGAAGCCCCCAGAGCCCCCGAAGGTC...CAATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTGTGTGTCTCAAATTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp AGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTGATTCAGGTCTGACTAGGCCTGGAGCCTaGAACACATCCTTCCCAAGA +
Preference number: 4 (lower is better)
Translates to: RSNTGSWLWHMIFSDSGLTRPGA*NTSFPR
Trigger: TCTTGGGAAGGATGTGTTCCAGGCTCCAGGCCTAGT...CAGACCTGAATCAGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR CCA 90 bp AGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTGATTCAGGTCTGGACATGAGGTCTTTTTaGGTCTTCTGGGCCAGCCCA +
Preference number: 4 (lower is better)
Translates to: RSNTGSWLWHMIFSDSGLDMRSF*VFWASP
Trigger: TGGGCTGGCCCAGAAGACCCAAAAAGACCTCATGTC...CAGACCTGAATCAGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000592095.5
CDS-3UTR TCA 90 bp ACAAATTTGAGACACACAATTAACAGAGGGCTGGAAGTTTTCCCACATATATTGCTGTCCAGGGTCCTCTaGGCAGGGTTGCAAGTACCC +
Preference number: 4 (lower is better)
Translates to: TNLRHTINRGLEVFPHILLSRVL*AGLQVP
Trigger: GGGTACTTGCAACCCTGCTCAGAGGACCCTGGACAG...CAATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTGTGTGTCTCAAATTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR TCA 90 bp GACACTGCCAGGTGTGCAACAATCTCTGGATTAATCCTCATAGAGATGGCTCCATCTCTGATTCAGGTCTaGGTGCTTTCTGCAAGGAAA +
Preference number: 4 (lower is better)
Translates to: DTARCATISGLILIEMAPSLIQV*VLSARK
Trigger: TTTCCTTGCAGAAAGCACTCAGACCTGAATCAGAGA...TGGAGCCATCTCTATGAGGATTAATCCAGAGATTGTTGCACACCTGGCAGTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR GCA 90 bp ACTCATTATATCATTTATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCTCTGAAGGGCCGAGCTaGTCGGCGACAGCAAGCGTC +
Preference number: 4 (lower is better)
Translates to: THYIIYHSITAYIPKRKASEGPS*SATASV
Trigger: GACGCTTGCTGTCGCCGAGCAGCTCGGCCCTTCAGA...GGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATAAATGATATAATGAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp TATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTGCCTAGCACGGCTCTaGGGCAGGACGAACTCGGGT +
Preference number: 4 (lower is better)
Translates to: YKIFTCNNSKCCKEQITSCLARL*GRTNSG
Trigger: ACCCGAGTTCGTCCTGCCGCAGAGCCGTGCTAGGCA...GCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp ACTCATTATATCATTTATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCTTCCCGCGTAGACCCTaGGCATGCGCGCATCGGACA +
Preference number: 4 (lower is better)
Translates to: THYIIYHSITAYIPKRKAFPRRP*ACAHRT
Trigger: TGTCCGATGCGCGCATGCGCAGGGTCTACGCGGGAA...GGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATAAATGATATAATGAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
CDS-3UTR GCA 90 bp ATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTTTCCCGCGTAGACCCTaGGCATGCGCGCATCGGACA +
Preference number: 4 (lower is better)
Translates to: IKSSHVTTASAVRNRLQAFPRRP*ACAHRT
Trigger: TGTCCGATGCGCGCATGCGCAGGGTCTACGCGGGAA...AGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
CDS-3UTR GCA 90 bp TGTATATGGAATTGCCAGGTTGAAAAGTCGTTCATAGACTTTCCCCCTTTCTTTGGGGGCTTCTCATCCTaGTCTTCCATGCTCTCCTCC +
Preference number: 4 (lower is better)
Translates to: CIWNCQVEKSFIDFPPFFGGFSS*SSMLSS
Trigger: GGAGGAGAGCATGGAAGAGCAGGATGAGAAGCCCCC...AAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp CAGTATTTCACACTCCATGAAAACATCAGCAACTGTTTTCCCAGACCTGACACTAAGGAAAGAATCCTGTaGACAGACCTTCGGGGGCTC +
Preference number: 4 (lower is better)
Translates to: QYFTLHENISNCFPRPDTKERIL*TDLRGL
Trigger: GAGCCCCCGAAGGTCTGTGCACAGGATTCTTTCCTT...AGTGTCAGGTCTGGGAAAACAGTTGCTGATGTTTTCATGGAGTGTGAAATACTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR GCA 90 bp TGTATATGGAATTGCCAGGTTGAAAAGTCGTTCATAGACTTTCCCCCTTTCTTTGTTCACTCCTTCCTGTaGACAGACCTTCGGGGGCTC +
Preference number: 4 (lower is better)
Translates to: CIWNCQVEKSFIDFPPFFVHSFL*TDLRGL
Trigger: GAGCCCCCGAAGGTCTGTGCACAGGAAGGAGTGAAC...AAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000391956.8
CDS-3UTR GCA 90 bp TGTATATGGAATTGCCAGGTTGAAAAGTCGTTCATAGACTTTCCCCCTTTCTTTCAGAGCAAGACTCTGTaGACAGACCTTCGGGGGCTC +
Preference number: 4 (lower is better)
Translates to: CIWNCQVEKSFIDFPPFFQSKTL*TDLRGL
Trigger: GAGCCCCCGAAGGTCTGTGCACAGAGTCTTGCTCTG...AAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000592095.5
CDS-3UTR TCA 90 bp ACTCATTATATCATTTATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCTGTCCAGGGTCCTCTaGGCAGGGTTGCAAGTACCC +
Preference number: 4 (lower is better)
Translates to: THYIIYHSITAYIPKRKALSRVL*AGLQVP
Trigger: GGGTACTTGCAACCCTGCTCAGAGGACCCTGGACAG...GGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATAAATGATATAATGAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR TCA 90 bp ATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTCTGTCCAGGGTCCTCTaGGCAGGGTTGCAAGTACCC +
Preference number: 4 (lower is better)
Translates to: IKSSHVTTASAVRNRLQALSRVL*AGLQVP
Trigger: GGGTACTTGCAACCCTGCTCAGAGGACCCTGGACAG...AGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp TTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTTCCTCTGAGCAGGGTTaGAAGTACCCTGTTCCTCCC +
Preference number: 4 (lower is better)
Translates to: LWKKRSNTGSWLWHMIFSSSEQG*KYPVPP
Trigger: GGGAGGAACAGGGTACTTGCAACCCTGCTCAGAGGA...AGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp TCTTGTTTTTCCTGTTGCTTCTCCAACTGGTCTTTACAATCATCCACTTCTTCATCCTCTGAGCAGGGTTaGAAGTACCCTGTTCCTCCC +
Preference number: 4 (lower is better)
Translates to: SCFSCCFSNWSLQSSTSSSSEQG*KYPVPP
Trigger: GGGAGGAACAGGGTACTTGCAACCCTGCTCAGAGGA...TGAAGAAGTGGATGATTGTAAAGACCAGTTGGAGAAGCAACAGGAAAAACAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp ACTCATTATATCATTTATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCATCCGCAAGGCCGCTaGGGGTTAAGTCTGAAGGGC +
Preference number: 4 (lower is better)
Translates to: THYIIYHSITAYIPKRKAHPQGR*GLSLKG
Trigger: GCCCTTCAGACTTAACCCCCAGCGGCCTTGCGGATG...GGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATAAATGATATAATGAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp AAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTATCATCCGCAAGGCCGCTaGGGGTTAAGTCTGAAGGGC +
Preference number: 4 (lower is better)
Translates to: KIFTCNNSKCCKEQITSYHPQGR*GLSLKG
Trigger: GCCCTTCAGACTTAACCCCCAGCGGCCTTGCGGATG...ATAGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR TCA 90 bp GACACTGCCAGGTGTGCAACAATCTCTGGATTAATCCTCATAGAGATGGCTCCACCATGGCAAAAAGATTaGATACGGTCACTAAATCCA +
Preference number: 4 (lower is better)
Translates to: DTARCATISGLILIEMAPPWQKD*IRSLNP
Trigger: TGGATTTAGTGACCGTATTCAATCTTTTTGCCATGG...TGGAGCCATCTCTATGAGGATTAATCCAGAGATTGTTGCACACCTGGCAGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR GCA 90 bp ACAAATTTGAGACACACAATTAACAGAGGGCTGGAAGTTTTCCCACATATATTGCATCCTGCTCTTCCATaGTCTCCTCCAGGCACAGCA +
Preference number: 4 (lower is better)
Translates to: TNLRHTINRGLEVFPHILHPALP*SPPGTA
Trigger: TGCTGTGCCTGGAGGAGAGCATGGAAGAGCAGGATG...CAATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTGTGTGTCTCAAATTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp ACTCATTATATCATTTATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCGGGGGCTTCTCATCCTaGTCTTCCATGCTCTCCTCC +
Preference number: 4 (lower is better)
Translates to: THYIIYHSITAYIPKRKAGGFSS*SSMLSS
Trigger: GGAGGAGAGCATGGAAGAGCAGGATGAGAAGCCCCC...GGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATAAATGATATAATGAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp TACTCTTTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTAAGGAAAGAATCCTGTaGACAGACCTTCGGGGGCTC +
Preference number: 4 (lower is better)
Translates to: YSLWKKRSNTGSWLWHMIKERIL*TDLRGL
Trigger: GAGCCCCCGAAGGTCTGTGCACAGGATTCTTTCCTT...AATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAAAGAGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000221327.8
ENST00000590088.5
CDS-3UTR CCA 90 bp CCTTTCTGGGATCAGAGGCTTCAATATATGGTCATCCACAGGATTCAAATTCATCTTCCTGAGATGGGATaGTCAGAGACCCAGTGTCTT +
Preference number: 4 (lower is better)
Translates to: PFWDQRLQYMVIHRIQIHLPEMG*SETQCL
Trigger: AAGACACTGGGTCTCTGACCATCCCATCTCAGGAAG...ATGAATTTGAATCCTGTGGATGACCATATATTGAAGCCTCTGATCCCAGAAAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR CCA 90 bp GACACTGCCAGGTGTGCAACAATCTCTGGATTAATCCTCATAGAGATGGCTCCAGGGATGAAAATAGACTaGAATTCAGACCACTCTTCT +
Preference number: 4 (lower is better)
Translates to: DTARCATISGLILIEMAPGMKID*NSDHSS
Trigger: AGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCC...TGGAGCCATCTCTATGAGGATTAATCCAGAGATTGTTGCACACCTGGCAGTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR TCA 90 bp TATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCAACATAAACTGAGAAAGTTCACTCCTTCCTaGGATGGGATGGTCAGAGAC +
Preference number: 4 (lower is better)
Translates to: YHSITAYIPKRKAQHKLRKFTPS*DGMVRD
Trigger: GTCTCTGACCATCCCATCTCAGGAAGGAGTGAACTT...TCTCAGTTTATGTTGGGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000221327.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR TCA 90 bp GGGATGAAAATAGACTGGAATTCAGACCACTCTTCTCCCCAGTTTCATCACTTTCCACAGTCACAATTTTaGAGTTCACTCCTTCCTGAG +
Preference number: 4 (lower is better)
Translates to: GMKIDWNSDHSSPQFHHFPQSQF*SSLLPE
Trigger: CTCAGGAAGGAGTGAACTTCAAAATTGTGACTGTGG...AAAGTGATGAAACTGGGGAGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp AAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTATCATCCTGCTCTTCCATaGTCTCCTCCAGGCACAGCA +
Preference number: 4 (lower is better)
Translates to: KIFTCNNSKCCKEQITSYHPALP*SPPGTA
Trigger: TGCTGTGCCTGGAGGAGAGCATGGAAGAGCAGGATG...ATAGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp TATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCCATCCTGCTCTTCCATaGTCTCCTCCAGGCACAGCA +
Preference number: 4 (lower is better)
Translates to: YKIFTCNNSKCCKEQITSHPALP*SPPGTA
Trigger: TGCTGTGCCTGGAGGAGAGCATGGAAGAGCAGGATG...GCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp ATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTTCCTCTGAGCAGGGTTaGAAGTACCCTGTTCCTCCC +
Preference number: 4 (lower is better)
Translates to: IKSSHVTTASAVRNRLQASSEQG*KYPVPP
Trigger: GGGAGGAACAGGGTACTTGCAACCCTGCTCAGAGGA...AGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp AAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTATTCCTCTGAGCAGGGTTaGAAGTACCCTGTTCCTCCC +
Preference number: 4 (lower is better)
Translates to: KIFTCNNSKCCKEQITSYSSEQG*KYPVPP
Trigger: GGGAGGAACAGGGTACTTGCAACCCTGCTCAGAGGA...ATAGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp AACATCAGCAACTGTTTTCCCAGACCTGACACTGCCAGGTGTGCAACAATCTCTGTGAATGCCACTTCCTaGAAAAGTATCTCTTGTTTT +
Preference number: 4 (lower is better)
Translates to: NISNCFPRPDTARCATISVNATS*KSISCF
Trigger: AAAACAAGAGATACTTTTGCAGGAAGTGGCATTCAC...AGAGATTGTTGCACACCTGGCAGTGTCAGGTCTGGGAAAACAGTTGCTGATGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR GCA 90 bp AACATCAGCAACTGTTTTCCCAGACCTGACACTGCCAGGTGTGCAACAATCTCTCATTGTATATGGAATTaGCAGGTTGAAAAGTCGTTC +
Preference number: 4 (lower is better)
Translates to: NISNCFPRPDTARCATISHCIWN*QVEKSF
Trigger: GAACGACTTTTCAACCTGGCAATTCCATATACAATG...AGAGATTGTTGCACACCTGGCAGTGTCAGGTCTGGGAAAACAGTTGCTGATGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR CCA 90 bp TTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTCTTCCTGAGATGGGATaGTCAGAGACCCAGTGTCTT +
Preference number: 4 (lower is better)
Translates to: LWKKRSNTGSWLWHMIFSLPEMG*SETQCL
Trigger: AAGACACTGGGTCTCTGACCATCCCATCTCAGGAAG...AGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000221327.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp AACATCAGCAACTGTTTTCCCAGACCTGACACTGCCAGGTGTGCAACAATCTCTCTTCACTCCATTAGCTaGTTCTTCATCAAAAATCCT +
Preference number: 4 (lower is better)
Translates to: NISNCFPRPDTARCATISLHSIS*FFIKNP
Trigger: AGGATTTTTGATGAAGAACCAGCTAATGGAGTGAAG...AGAGATTGTTGCACACCTGGCAGTGTCAGGTCTGGGAAAACAGTTGCTGATGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR TCA 90 bp AGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTGATTCAGGTCTGGCATATGATTTTCTCTaGTTCAGGTCTGAGTGCTTT +
Preference number: 4 (lower is better)
Translates to: RSNTGSWLWHMIFSDSGLAYDFL*FRSECF
Trigger: AAAGCACTCAGACCTGAATCAGAGAAAATCATATGC...CAGACCTGAATCAGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp ACTCATTATATCATTTATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCGTGGTCCCCAAGGGATaGCCGCAGCTTTCAGTATTT +
Preference number: 4 (lower is better)
Translates to: THYIIYHSITAYIPKRKAVVPKG*PQLSVF
Trigger: AAATACTGAAAGCTGCGGGCATCCCTTGGGGACCAC...GGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATAAATGATATAATGAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR TCA 90 bp CAGTATTTCACACTCCATGAAAACATCAGCAACTGTTTTCCCAGACCTGACACTGTAAGGGAGGAACTATaGGAGGTTTCACTACATTTA +
Preference number: 4 (lower is better)
Translates to: QYFTLHENISNCFPRPDTVREEL*EVSLHL
Trigger: TAAATGTAGTGAAACCTCTCATAGTTCCTCCCTTAC...AGTGTCAGGTCTGGGAAAACAGTTGCTGATGTTTTCATGGAGTGTGAAATACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR TCA 90 bp GGGATGAAAATAGACTGGAATTCAGACCACTCTTCTCCCCAGTTTCATCACTTTATGGAATTGCCAGGTTaGAAAGTCGTTCATAGACTT +
Preference number: 4 (lower is better)
Translates to: GMKIDWNSDHSSPQFHHFMELPG*KVVHRL
Trigger: AAGTCTATGAACGACTTTTCAACCTGGCAATTCCAT...AAAGTGATGAAACTGGGGAGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
CDS-3UTR TCA 90 bp TGTATATGGAATTGCCAGGTTGAAAAGTCGTTCATAGACTTTCCCCCTTTCTTTCTCTTTCAGACTCATTaGGGGTTCTTCAAAGTGTGG +
Preference number: 4 (lower is better)
Translates to: CIWNCQVEKSFIDFPPFFLFQTH*GFFKVW
Trigger: CCACACTTTGAAGAACCCTCAATGAGTCTGAAAGAG...AAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR GCA 90 bp AGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTGATTCAGGTCTGTGTAACAACAGCAAGTaGTGTAAGGAACAGATTACA +
Preference number: 4 (lower is better)
Translates to: RSNTGSWLWHMIFSDSGLCNNSK*CKEQIT
Trigger: TGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACA...CAGACCTGAATCAGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp TATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCCTAGGATTGTGTCACTaGACTCCAACCTGGACGACA +
Preference number: 4 (lower is better)
Translates to: YKIFTCNNSKCCKEQITSLGLCH*TPTWTT
Trigger: TGTCGTCCAGGTTGGAGTGCAGTGACACAATCCTAG...GCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000592095.5
CDS-3UTR CCA 90 bp GGGATGAAAATAGACTGGAATTCAGACCACTCTTCTCCCCAGTTTCATCACTTTTGTTGCTTCTCCAACTaGTCTTTACAATCATCCACT +
Preference number: 4 (lower is better)
Translates to: GMKIDWNSDHSSPQFHHFCCFSN*SLQSST
Trigger: AGTGGATGATTGTAAAGACCAGTTGGAGAAGCAACA...AAAGTGATGAAACTGGGGAGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp AAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTATTCTTTTTGGGTCTTCTaGGCCAGCCCATTGCAGCTA +
Preference number: 4 (lower is better)
Translates to: KIFTCNNSKCCKEQITSYSFWVF*ASPLQL
Trigger: TAGCTGCAATGGGCTGGCCCAGAAGACCCAAAAAGA...ATAGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000592095.5
CDS-3UTR TCA 90 bp CCTTTCTGGGATCAGAGGCTTCAATATATGGTCATCCACAGGATTCAAATTCATGCATATGATTTTCTCTaGTTCAGGTCTGAGTGCTTT +
Preference number: 4 (lower is better)
Translates to: PFWDQRLQYMVIHRIQIHAYDFL*FRSECF
Trigger: AAAGCACTCAGACCTGAATCAGAGAAAATCATATGC...ATGAATTTGAATCCTGTGGATGACCATATATTGAAGCCTCTGATCCCAGAAAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR CCA 90 bp GGGATGAAAATAGACTGGAATTCAGACCACTCTTCTCCCCAGTTTCATCACTTTCTTCACTCCATTAGCTaGTTCTTCATCAAAAATCCT +
Preference number: 4 (lower is better)
Translates to: GMKIDWNSDHSSPQFHHFLHSIS*FFIKNP
Trigger: AGGATTTTTGATGAAGAACCAGCTAATGGAGTGAAG...AAAGTGATGAAACTGGGGAGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp CAGTATTTCACACTCCATGAAAACATCAGCAACTGTTTTCCCAGACCTGACACTCAATTAACAGAGGGCTaGAAGTTTTCCCACATATAT +
Preference number: 4 (lower is better)
Translates to: QYFTLHENISNCFPRPDTQLTEG*KFSHIY
Trigger: ATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTG...AGTGTCAGGTCTGGGAAAACAGTTGCTGATGTTTTCATGGAGTGTGAAATACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR CCA 90 bp CCACTTGCCCTCTATACTTCCCACGCATTCTCAGTTCTTCATATGAAACCATTTAGAGGCTTCAATATATaGTCATCCACAGGATTCAAA +
Preference number: 4 (lower is better)
Translates to: PLALYTSHAFSVLHMKPFRGFNI*SSTGFK
Trigger: TTTGAATCCTGTGGATGACCATATATTGAAGCCTCT...AAATGGTTTCATATGAAGAACTGAGAATGCGTGGGAAGTATAGAGGGCAAGTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR TCA 90 bp TACTCTTTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTCCATGGCAAAAAGATTaGATACGGTCACTAAATCCA +
Preference number: 4 (lower is better)
Translates to: YSLWKKRSNTGSWLWHMIPWQKD*IRSLNP
Trigger: TGGATTTAGTGACCGTATTCAATCTTTTTGCCATGG...AATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAAAGAGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR TCA 90 bp TGTATATGGAATTGCCAGGTTGAAAAGTCGTTCATAGACTTTCCCCCTTTCTTTGTAAGGGAGGAACTATaGGAGGTTTCACTACATTTA +
Preference number: 4 (lower is better)
Translates to: CIWNCQVEKSFIDFPPFFVREEL*EVSLHL
Trigger: TAAATGTAGTGAAACCTCTCATAGTTCCTCCCTTAC...AAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR TCA 90 bp TTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTGTAAGGGAGGAACTATaGGAGGTTTCACTACATTTA +
Preference number: 4 (lower is better)
Translates to: LWKKRSNTGSWLWHMIFSVREEL*EVSLHL
Trigger: TAAATGTAGTGAAACCTCTCATAGTTCCTCCCTTAC...AGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR TCA 90 bp TACTCTTTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTATGGAATTGCCAGGTTaGAAAGTCGTTCATAGACTT +
Preference number: 4 (lower is better)
Translates to: YSLWKKRSNTGSWLWHMIMELPG*KVVHRL
Trigger: AAGTCTATGAACGACTTTTCAACCTGGCAATTCCAT...AATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAAAGAGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR TCA 90 bp TATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTCTCTGATTCAGGTCTaGGTGCTTTCTGCAAGGAAA +
Preference number: 4 (lower is better)
Translates to: YKIFTCNNSKCCKEQITSSLIQV*VLSARK
Trigger: TTTCCTTGCAGAAAGCACTCAGACCTGAATCAGAGA...GCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR TCA 90 bp AAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTATTCTCTGATTCAGGTCTaGGTGCTTTCTGCAAGGAAA +
Preference number: 4 (lower is better)
Translates to: KIFTCNNSKCCKEQITSYSLIQV*VLSARK
Trigger: TTTCCTTGCAGAAAGCACTCAGACCTGAATCAGAGA...ATAGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR TCA 90 bp TTAGGGTCATCTCATAGGGATAGAATTTTGCTAAGGATAACCCCATCAGTTACCTCTCAGTTCTTCATATaGAACCATTTCTGGCCAAAA +
Preference number: 4 (lower is better)
Translates to: LGSSHRDRILLRITPSVTSQFFI*NHFWPK
Trigger: TTTTGGCCAGAAATGGTTTCATATGAAGAACTGAGA...GGTAACTGATGGGGTTATCCTTAGCAAAATTCTATCCCTATGAGATGACCCTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR TCA 90 bp CCTTTCTGGGATCAGAGGCTTCAATATATGGTCATCCACAGGATTCAAATTCATGTATTTCACACTCCATaGAAACATCAGCAACTGTTT +
Preference number: 4 (lower is better)
Translates to: PFWDQRLQYMVIHRIQIHVFHTP*KHQQLF
Trigger: AAACAGTTGCTGATGTTTTCATGGAGTGTGAAATAC...ATGAATTTGAATCCTGTGGATGACCATATATTGAAGCCTCTGATCCCAGAAAGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR TCA 90 bp TATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCCCACAGTCACAATTTTaGAGTTCACTCCTTCCTGTG +
Preference number: 4 (lower is better)
Translates to: YKIFTCNNSKCCKEQITSPQSQF*SSLLPV
Trigger: CACAGGAAGGAGTGAACTTCAAAATTGTGACTGTGG...GCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000391956.8
CDS-3UTR TCA 90 bp ACAAATTTGAGACACACAATTAACAGAGGGCTGGAAGTTTTCCCACATATATTGAAAGAATCCTGGACATaGGGTCTTTTTGGGTCTTCT +
Preference number: 4 (lower is better)
Translates to: TNLRHTINRGLEVFPHILKESWT*GLFGSS
Trigger: AGAAGACCCAAAAAGACCTCATGTCCAGGATTCTTT...CAATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTGTGTGTCTCAAATTTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000592095.5
CDS-3UTR TCA 90 bp TTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTTTGATGATAATCTCTTaGGGAAGGAAAGAATCCTGG +
Preference number: 4 (lower is better)
Translates to: LWKKRSNTGSWLWHMIFSLMIIS*GRKESW
Trigger: CCAGGATTCTTTCCTTCCTCAAGAGATTATCATCAA...AGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000592095.5
CDS-3UTR CCA 90 bp TTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTTGTTGCTTCTCCAACTaGTCTTTACAATCATCCACT +
Preference number: 4 (lower is better)
Translates to: LWKKRSNTGSWLWHMIFSCCFSN*SLQSST
Trigger: AGTGGATGATTGTAAAGACCAGTTGGAGAAGCAACA...AGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp TGTATATGGAATTGCCAGGTTGAAAAGTCGTTCATAGACTTTCCCCCTTTCTTTGGGATGAAAATAGACTaGAATTCAGACCACTCTTCT +
Preference number: 4 (lower is better)
Translates to: CIWNCQVEKSFIDFPPFFGMKID*NSDHSS
Trigger: AGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCC...AAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp TTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTGGGATGAAAATAGACTaGAATTCAGACCACTCTTCT +
Preference number: 4 (lower is better)
Translates to: LWKKRSNTGSWLWHMIFSGMKID*NSDHSS
Trigger: AGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCC...AGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp TCCAACTGGTCTTTACAATCATCCACTTCTTCACATGAAGATAACCAAGGATCAACTGGCAGTTGGCTTTaGCATATGATTTTCTCTGAT +
Preference number: 4 (lower is better)
Translates to: SNWSLQSSTSSHEDNQGSTGSWL*HMIFSD
Trigger: ATCAGAGAAAATCATATGCCAAAGCCAACTGCCAGT...TGATCCTTGGTTATCTTCATGTGAAGAAGTGGATGATTGTAAAGACCAGTTGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp TTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTACTGGCAGTTGGCTTTaGCATATGATTTTCTCTGAT +
Preference number: 4 (lower is better)
Translates to: LWKKRSNTGSWLWHMIFSTGSWL*HMIFSD
Trigger: ATCAGAGAAAATCATATGCCAAAGCCAACTGCCAGT...AGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp CCTTTCTGGGATCAGAGGCTTCAATATATGGTCATCCACAGGATTCAAATTCATGTGTGCAACAATCTCTaGATTAATCCTCATAGAGAT +
Preference number: 4 (lower is better)
Translates to: PFWDQRLQYMVIHRIQIHVCNNL*INPHRD
Trigger: ATCTCTATGAGGATTAATCCAGAGATTGTTGCACAC...ATGAATTTGAATCCTGTGGATGACCATATATTGAAGCCTCTGATCCCAGAAAGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR TCA 90 bp TGTATATGGAATTGCCAGGTTGAAAAGTCGTTCATAGACTTTCCCCCTTTCTTTTTGATGATAATCTCTTaGGGAAGGAAAGAATCCTGT +
Preference number: 4 (lower is better)
Translates to: CIWNCQVEKSFIDFPPFFLMIIS*GRKESC
Trigger: ACAGGATTCTTTCCTTCCTCAAGAGATTATCATCAA...AAAGAAAGGGGGAAAGTCTATGAACGACTTTTCAACCTGGCAATTCCATATACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000221327.8
ENST00000590088.5
CDS-3UTR TCA 90 bp ACAAATTTGAGACACACAATTAACAGAGGGCTGGAAGTTTTCCCACATATATTGCCATGGCAAAAAGATTaGATACGGTCACTAAATCCA +
Preference number: 4 (lower is better)
Translates to: TNLRHTINRGLEVFPHILPWQKD*IRSLNP
Trigger: TGGATTTAGTGACCGTATTCAATCTTTTTGCCATGG...CAATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTGTGTGTCTCAAATTTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR TCA 90 bp ACAAATTTGAGACACACAATTAACAGAGGGCTGGAAGTTTTCCCACATATATTGAGAGACAATGCTACATaGGGGGAAGAACTAAAACAT +
Preference number: 4 (lower is better)
Translates to: TNLRHTINRGLEVFPHILRDNAT*GEELKH
Trigger: ATGTTTTAGTTCTTCCCCTCATGTAGCATTGTCTCT...CAATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTGTGTGTCTCAAATTTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR GCA 90 bp TTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTGTGAATGCCACTTCCTaGAAAAGTATCTCTTGTTTT +
Preference number: 4 (lower is better)
Translates to: LWKKRSNTGSWLWHMIFSVNATS*KSISCF
Trigger: AAAACAAGAGATACTTTTGCAGGAAGTGGCATTCAC...AGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp TACTCTTTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTTCCTTTGAGTGAATaGCACTTCCTGCAAAAGTAT +
Preference number: 4 (lower is better)
Translates to: YSLWKKRSNTGSWLWHMIFPLSE*HFLQKY
Trigger: ATACTTTTGCAGGAAGTGGCATTCACTCAAAGGAAA...AATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAAAGAGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp TACTCTTTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTGTAACAACAGCAAGTaGTGTAAGGAACAGATTACA +
Preference number: 4 (lower is better)
Translates to: YSLWKKRSNTGSWLWHMICNNSK*CKEQIT
Trigger: TGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACA...AATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAAAGAGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp ATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTTTAGGAAAAGACCATTaGAGGGGCACAGTCTTTCAA +
Preference number: 4 (lower is better)
Translates to: IKSSHVTTASAVRNRLQALGKDH*RGTVFQ
Trigger: TTGAAAGACTGTGCCCCTGCAATGGTCTTTTCCTAA...AGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR CCA 90 bp TACTCTTTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTCTTCACTCCATTAGCTaGTTCTTCATCAAAAATCCT +
Preference number: 4 (lower is better)
Translates to: YSLWKKRSNTGSWLWHMILHSIS*FFIKNP
Trigger: AGGATTTTTGATGAAGAACCAGCTAATGGAGTGAAG...AATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAAAGAGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp TTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTCTTCACTCCATTAGCTaGTTCTTCATCAAAAATCCT +
Preference number: 4 (lower is better)
Translates to: LWKKRSNTGSWLWHMIFSLHSIS*FFIKNP
Trigger: AGGATTTTTGATGAAGAACCAGCTAATGGAGTGAAG...AGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp ACAAATTTGAGACACACAATTAACAGAGGGCTGGAAGTTTTCCCACATATATTGTGTTGCTTCTCCAACTaGTCTTTACAATCATCCACT +
Preference number: 4 (lower is better)
Translates to: TNLRHTINRGLEVFPHILCCFSN*SLQSST
Trigger: AGTGGATGATTGTAAAGACCAGTTGGAGAAGCAACA...CAATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTGTGTGTCTCAAATTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp TTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTCAATTAACAGAGGGCTaGAAGTTTTCCCACATATAT +
Preference number: 4 (lower is better)
Translates to: LWKKRSNTGSWLWHMIFSQLTEG*KFSHIY
Trigger: ATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTG...AGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp TCCAACTGGTCTTTACAATCATCCACTTCTTCACATGAAGATAACCAAGGATCACAATTAACAGAGGGCTaGAAGTTTTCCCACATATAT +
Preference number: 4 (lower is better)
Translates to: SNWSLQSSTSSHEDNQGSQLTEG*KFSHIY
Trigger: ATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTG...TGATCCTTGGTTATCTTCATGTGAAGAAGTGGATGATTGTAAAGACCAGTTGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp TCTTGTTTTTCCTGTTGCTTCTCCAACTGGTCTTTACAATCATCCACTTCTTCACAATTAACAGAGGGCTaGAAGTTTTCCCACATATAT +
Preference number: 4 (lower is better)
Translates to: SCFSCCFSNWSLQSSTSSQLTEG*KFSHIY
Trigger: ATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTG...TGAAGAAGTGGATGATTGTAAAGACCAGTTGGAGAAGCAACAGGAAAAACAAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp ACAAATTTGAGACACACAATTAACAGAGGGCTGGAAGTTTTCCCACATATATTGACTGGCAGTTGGCTTTaGCATATGATTTTCTCTGAT +
Preference number: 4 (lower is better)
Translates to: TNLRHTINRGLEVFPHILTGSWL*HMIFSD
Trigger: ATCAGAGAAAATCATATGCCAAAGCCAACTGCCAGT...CAATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTGTGTGTCTCAAATTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp TATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCAACATAAACTGAGAAGCTTATTACCTTTCTaGGATCAGAGGCTTCAATAT +
Preference number: 4 (lower is better)
Translates to: YHSITAYIPKRKAQHKLRSLLPF*DQRLQY
Trigger: ATATTGAAGCCTCTGATCCCAGAAAGGTAATAAGCT...TCTCAGTTTATGTTGGGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR CCA 90 bp CCTTTCTGGGATCAGAGGCTTCAATATATGGTCATCCACAGGATTCAAATTCATTTAACCTCTATTATCTaGTCTCTCAGTTCAACTTTC +
Preference number: 4 (lower is better)
Translates to: PFWDQRLQYMVIHRIQIHLTSII*SLSSTF
Trigger: GAAAGTTGAACTGAGAGACCAGATAATAGAGGTTAA...ATGAATTTGAATCCTGTGGATGACCATATATTGAAGCCTCTGATCCCAGAAAGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR TCA 90 bp ACAAATTTGAGACACACAATTAACAGAGGGCTGGAAGTTTTCCCACATATATTGTTGATGATAATCTCTTaGGGAAGGAAAGAATCCTGT +
Preference number: 4 (lower is better)
Translates to: TNLRHTINRGLEVFPHILLMIIS*GRKESC
Trigger: ACAGGATTCTTTCCTTCCTCAAGAGATTATCATCAA...CAATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTGTGTGTCTCAAATTTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000221327.8
ENST00000590088.5
CDS-3UTR TCA 90 bp AAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTATCCATGGCAAAAAGATTaGATACGGTCACTAAATCCA +
Preference number: 4 (lower is better)
Translates to: KIFTCNNSKCCKEQITSYPWQKD*IRSLNP
Trigger: TGGATTTAGTGACCGTATTCAATCTTTTTGCCATGG...ATAGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR TCA 90 bp ATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTGTAAGGGAGGAACTATaGGAGGTTTCACTACATTTA +
Preference number: 4 (lower is better)
Translates to: IKSSHVTTASAVRNRLQAVREEL*EVSLHL
Trigger: TAAATGTAGTGAAACCTCTCATAGTTCCTCCCTTAC...AGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR TCA 90 bp ATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTATGGAATTGCCAGGTTaGAAAGTCGTTCATAGACTT +
Preference number: 4 (lower is better)
Translates to: IKSSHVTTASAVRNRLQAMELPG*KVVHRL
Trigger: AAGTCTATGAACGACTTTTCAACCTGGCAATTCCAT...AGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR TCA 90 bp TATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCGCATATGATTTTCTCTaGTTCAGGTCTGAGTGCTTT +
Preference number: 4 (lower is better)
Translates to: YKIFTCNNSKCCKEQITSAYDFL*FRSECF
Trigger: AAAGCACTCAGACCTGAATCAGAGAAAATCATATGC...GCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp ACAAATTTGAGACACACAATTAACAGAGGGCTGGAAGTTTTCCCACATATATTGTTTCCTTTGAGTGAATaGCACTTCCTGCAAAAGTAT +
Preference number: 4 (lower is better)
Translates to: TNLRHTINRGLEVFPHILFPLSE*HFLQKY
Trigger: ATACTTTTGCAGGAAGTGGCATTCACTCAAAGGAAA...CAATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTGTGTGTCTCAAATTTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp TATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCAACATAAACTGAGAGTAGTAATCTGCTCATaGTATTCCAAACATAAACCT +
Preference number: 4 (lower is better)
Translates to: YHSITAYIPKRKAQHKLRVVICS*YSKHKP
Trigger: AGGTTTATGTTTGGAATAGCATGAGCAGATTACTAC...TCTCAGTTTATGTTGGGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR CCA 90 bp AAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTATTGTTGCTTCTCCAACTaGTCTTTACAATCATCCACT +
Preference number: 4 (lower is better)
Translates to: KIFTCNNSKCCKEQITSYCCFSN*SLQSST
Trigger: AGTGGATGATTGTAAAGACCAGTTGGAGAAGCAACA...ATAGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp ATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTGGGATGAAAATAGACTaGAATTCAGACCACTCTTCT +
Preference number: 4 (lower is better)
Translates to: IKSSHVTTASAVRNRLQAGMKID*NSDHSS
Trigger: AGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCC...AGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CCA 90 bp ACTCATTATATCATTTATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCACTGGCAGTTGGCTTTaGCATATGATTTTCTCTGAT +
Preference number: 4 (lower is better)
Translates to: THYIIYHSITAYIPKRKATGSWL*HMIFSD
Trigger: ATCAGAGAAAATCATATGCCAAAGCCAACTGCCAGT...GGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATAAATGATATAATGAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp AAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTATTTTCCTTTGAGTGAATaGCACTTCCTGCAAAAGTAT +
Preference number: 4 (lower is better)
Translates to: KIFTCNNSKCCKEQITSYFPLSE*HFLQKY
Trigger: ATACTTTTGCAGGAAGTGGCATTCACTCAAAGGAAA...ATAGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp ATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTCATTGTATATGGAATTaGCAGGTTGAAAAGTCGTTC +
Preference number: 4 (lower is better)
Translates to: IKSSHVTTASAVRNRLQAHCIWN*QVEKSF
Trigger: GAACGACTTTTCAACCTGGCAATTCCATATACAATG...AGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp AAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTATTGTAACAACAGCAAGTaGTGTAAGGAACAGATTACA +
Preference number: 4 (lower is better)
Translates to: KIFTCNNSKCCKEQITSYCNNSK*CKEQIT
Trigger: TGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACA...ATAGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR GCA 90 bp ACAAATTTGAGACACACAATTAACAGAGGGCTGGAAGTTTTCCCACATATATTGCTCATATCCCCTTTGTaGTTCTTAAAGATGGTTAAA +
Preference number: 4 (lower is better)
Translates to: TNLRHTINRGLEVFPHILLISPL*FLKMVK
Trigger: TTTAACCATCTTTAAGAAGCACAAAGGGGATATGAG...CAATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTGTGTGTCTCAAATTTGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS CCA 90 bp GGACACCAAGCGCTGCCCCACGCCCCTACCAACCTGGGCGTCCGCTaGCCCGCAGCCCAGGCTGGGCCTGTCACCGCCTCAGTGCCTAGC +
Preference number: 5 (lower is better)
Translates to: GHQALPHAPTNLGVR*PAAQAGPVTASVPS
Trigger: GCTAGGCACTGAGGCGGTGACAGGCCCAGCCTGGGCTGCGGGCCAGCGGACGCCCAGGTTGGTAGGGGCGTGGGGCAGCGCTTGGTGTCC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000585514.5
ENST00000587047.1
ENST00000590088.5
ENST00000590366.1
ENST00000592140.1
CDS GCA 90 bp GGTGCTGAGGTCCTGAGCACCGCTTCCAGCTTCCCGCGTAGACCCTaGGCATGCGCGCATCGGACACCAAGCGCTGCCCCACGCCCCTAC +
Preference number: 5 (lower is better)
Translates to: GAEVLSTASSFPRRP*ACAHRTPSAAPRPY
Trigger: GTAGGGGCGTGGGGCAGCGCTTGGTGTCCGATGCGCGCATGCGCAGGGTCTACGCGGGAAGCTGGAAGCGGTGCTCAGGACCTCAGCACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000592140.1
CDS GCA 90 bp GAGGTCCTGAGCACCGCTTCCAGCTTCCCGCGTAGACCCTGCGCATaGGCGCATCGGACACCAAGCGCTGCCCCACGCCCCTACCAACCT +
Preference number: 5 (lower is better)
Translates to: EVLSTASSFPRRPCA*AHRTPSAAPRPYQP
Trigger: AGGTTGGTAGGGGCGTGGGGCAGCGCTTGGTGTCCGATGCGCGCATGCGCAGGGTCTACGCGGGAAGCTGGAAGCGGTGCTCAGGACCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000592140.1
CDS GCA 90 bp CCTGAGCTGCACACCGCTTCCAGCTTCCCGCGTAGACCCTGCGCATaGGCGCATCGGACACCAAGCGCTGCCCCACGCCCCTACCAACCT +
Preference number: 5 (lower is better)
Translates to: PELHTASSFPRRPCA*AHRTPSAAPRPYQP
Trigger: AGGTTGGTAGGGGCGTGGGGCAGCGCTTGGTGTCCGATGCGCGCATGCGCAGGGTCTACGCGGGAAGCTGGAAGCGGTGTGCAGCTCAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000585514.5
ENST00000587047.1
ENST00000590088.5
ENST00000590366.1
CDS GCA 90 bp CCTTCCTGTGCACAGACCTTCGGGGGCTCTGGGGGCTTCTCATCCTaGTCTTCCATGCTCTCCTCCAGGCACAGCAGGGTGCTGAGGTCC +
Preference number: 5 (lower is better)
Translates to: PSCAQTFGGSGGFSS*SSMLSSRHSRVLRS
Trigger: GGACCTCAGCACCCTGCTGTGCCTGGAGGAGAGCATGGAAGAGCAGGATGAGAAGCCCCCAGAGCCCCCGAAGGTCTGTGCACAGGAAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000391956.8
CDS GCA 90 bp GAATCCTGTGCACAGACCTTCGGGGGCTCTGGGGGCTTCTCATCCTaGTCTTCCATGCTCTCCTCCAGGCACAGCAGGGTGCTGAGGTCC +
Preference number: 5 (lower is better)
Translates to: ESCAQTFGGSGGFSS*SSMLSSRHSRVLRS
Trigger: GGACCTCAGCACCCTGCTGTGCCTGGAGGAGAGCATGGAAGAGCAGGATGAGAAGCCCCCAGAGCCCCCGAAGGTCTGTGCACAGGATTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENST00000221327.8
ENST00000585514.5
ENST00000587047.1
ENST00000590088.5
ENST00000591064.1
ENST00000592529.6
CDS GCA 90 bp AGACTCTGTGCACAGACCTTCGGGGGCTCTGGGGGCTTCTCATCCTaGTCTTCCATGCTCTCCTCCAGGCACAGCAGGGTGCTGAGGTCC +
Preference number: 5 (lower is better)
Translates to: RLCAQTFGGSGGFSS*SSMLSSRHSRVLRS
Trigger: GGACCTCAGCACCCTGCTGTGCCTGGAGGAGAGCATGGAAGAGCAGGATGAGAAGCCCCCAGAGCCCCCGAAGGTCTGTGCACAGAGTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000590366.1
ENST00000592095.5
CDS GCA 90 bp TCTGTCTGTGCACAGACCTTCGGGGGCTCTGGGGGCTTCTCATCCTaGTCTTCCATGCTCTCCTCCAGGCACAGCAGGGTGCTGAGGTCC +
Preference number: 5 (lower is better)
Translates to: SVCAQTFGGSGGFSS*SSMLSSRHSRVLRS
Trigger: GGACCTCAGCACCCTGCTGTGCCTGGAGGAGAGCATGGAAGAGCAGGATGAGAAGCCCCCAGAGCCCCCGAAGGTCTGTGCACAGACAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000592140.1
CDS GCA 90 bp TCCATCTGTGCACAGACCTTCGGGGGCTCTGGGGGCTTCTCATCCTaGTCTTCCATGCTCTCCTCCAGGCACAGCAGGGTGCTGAGGTCC +
Preference number: 5 (lower is better)
Translates to: SICAQTFGGSGGFSS*SSMLSSRHSRVLRS
Trigger: GGACCTCAGCACCCTGCTGTGCCTGGAGGAGAGCATGGAAGAGCAGGATGAGAAGCCCCCAGAGCCCCCGAAGGTCTGTGCACAGATGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000586637.5
CDS-3UTR CAA 90 bp GACACTGCCAGGTGTGCAACAATCTCTGGATTAATCCTCATAGAGATGGCTCCATTTTTCCAACTGCAGTaGCCAAGTCCCAAGAGACTA +
Preference number: 5 (lower is better)
Translates to: DTARCATISGLILIEMAPFFQLQ*PSPKRL
Trigger: TAGTCTCTTGGGACTTGGCAACTGCAGTTGGAAAAA...TGGAGCCATCTCTATGAGGATTAATCCAGAGATTGTTGCACACCTGGCAGTGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR CAA 90 bp AGGGAAGCACCCTTCTATTCAGAGGACTCTCACATCAGGGAACATATCCCAGAGATAGGACAGACAGACTaGGAACTTTGTTCAACTGTC +
Preference number: 5 (lower is better)
Translates to: REAPFYSEDSHIREHIPEIGQTD*ELCSTV
Trigger: GACAGTTGAACAAAGTTCCAAGTCTGTCTGTCCTAT...CTCTGGGATATGTTCCCTGATGTGAGAGTCCTCTGAATAGAAGGGTGCTTCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR CAA 90 bp AGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTGATTCAGGTCTGCCTCTTTCAGACTCATaGAGGGTTCTTCAAAGTGTG +
Preference number: 5 (lower is better)
Translates to: RSNTGSWLWHMIFSDSGLPLSDS*RVLQSV
Trigger: CACACTTTGAAGAACCCTCAATGAGTCTGAAAGAGG...CAGACCTGAATCAGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR CAA 90 bp GACACTGCCAGGTGTGCAACAATCTCTGGATTAATCCTCATAGAGATGGCTCCAGACAGACTTGGAACTTaGTTCAACTGTCTTAGGAAA +
Preference number: 5 (lower is better)
Translates to: DTARCATISGLILIEMAPDRLGT*FNCLRK
Trigger: TTTCCTAAGACAGTTGAACAAAGTTCCAAGTCTGTC...TGGAGCCATCTCTATGAGGATTAATCCAGAGATTGTTGCACACCTGGCAGTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR CAA 90 bp GGGATGAAAATAGACTGGAATTCAGACCACTCTTCTCCCCAGTTTCATCACTTTTTTGATGATAATCTCTaGAGGAAGGAAAGAATCCTG +
Preference number: 5 (lower is better)
Translates to: GMKIDWNSDHSSPQFHHFFDDNL*RKERIL
Trigger: CAGGATTCTTTCCTTCCTCAAGAGATTATCATCAAA...AAAGTGATGAAACTGGGGAGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCC
40% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CAA 90 bp TATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCAACATAAACTGAGAAATAACTGCTTTCCTTaGAGTGAATGCCACTTCCTG +
Preference number: 5 (lower is better)
Translates to: YHSITAYIPKRKAQHKLRNNCFP*SECHFL
Trigger: CAGGAAGTGGCATTCACTCAAAGGAAAGCAGTTATT...TCTCAGTTTATGTTGGGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CAA 90 bp TTATGGAAAAAGAGGTCTAACACTGGCAGTTGGCTTTGGCATATGATTTTCTCTTCCACAGTCACAATTTaGAAGTTCACTCCTTCCTGT +
Preference number: 5 (lower is better)
Translates to: LWKKRSNTGSWLWHMIFSSTVTI*KFTPSC
Trigger: ACAGGAAGGAGTGAACTTCAAAATTGTGACTGTGGA...AGAGAAAATCATATGCCAAAGCCAACTGCCAGTGTTAGACCTCTTTTTCCATAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000391956.8
CDS-3UTR CAA 90 bp ACTCATTATATCATTTATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCTTTTTCCAACTGCAGTaGCCAAGTCCCAAGAGACTA +
Preference number: 5 (lower is better)
Translates to: THYIIYHSITAYIPKRKAFFQLQ*PSPKRL
Trigger: TAGTCTCTTGGGACTTGGCAACTGCAGTTGGAAAAA...GGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATAAATGATATAATGAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CAA 90 bp ACAAATTTGAGACACACAATTAACAGAGGGCTGGAAGTTTTCCCACATATATTGAATAACTGCTTTCCTTaGAGTGAATGCCACTTCCTG +
Preference number: 5 (lower is better)
Translates to: TNLRHTINRGLEVFPHILNNCFP*SECHFL
Trigger: CAGGAAGTGGCATTCACTCAAAGGAAAGCAGTTATT...CAATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTGTGTGTCTCAAATTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CAA 90 bp TCTTGTTTTTCCTGTTGCTTCTCCAACTGGTCTTTACAATCATCCACTTCTTCAACCATGGCAAAAAGATaGAATACGGTCACTAAATCC +
Preference number: 5 (lower is better)
Translates to: SCFSCCFSNWSLQSSTSSTMAKR*NTVTKS
Trigger: GGATTTAGTGACCGTATTCAATCTTTTTGCCATGGT...TGAAGAAGTGGATGATTGTAAAGACCAGTTGGAGAAGCAACAGGAAAAACAAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CAA 90 bp TATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCCAACATAAACTGAGACATAGGGATAGAATTTaGCTAAGGATAACCCCATCA +
Preference number: 5 (lower is better)
Translates to: YHSITAYIPKRKAQHKLRHRDRI*LRITPS
Trigger: TGATGGGGTTATCCTTAGCAAAATTCTATCCCTATG...TCTCAGTTTATGTTGGGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221327.8
CDS-3UTR CAA 90 bp AAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTATAATAACTGCTTTCCTTaGAGTGAATGCCACTTCCTG +
Preference number: 5 (lower is better)
Translates to: KIFTCNNSKCCKEQITSYNNCFP*SECHFL
Trigger: CAGGAAGTGGCATTCACTCAAAGGAAAGCAGTTATT...ATAGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CAA 90 bp ACAAATTTGAGACACACAATTAACAGAGGGCTGGAAGTTTTCCCACATATATTGACCATGGCAAAAAGATaGAATACGGTCACTAAATCC +
Preference number: 5 (lower is better)
Translates to: TNLRHTINRGLEVFPHILTMAKR*NTVTKS
Trigger: GGATTTAGTGACCGTATTCAATCTTTTTGCCATGGT...CAATATATGTGGGAAAACTTCCAGCCCTCTGTTAATTGTGTGTCTCAAATTTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CAA 90 bp ACTCATTATATCATTTATCATAGCATAACAGCGTACATTCCAAAAAGGAAGGCCACCATGGCAAAAAGATaGAATACGGTCACTAAATCC +
Preference number: 5 (lower is better)
Translates to: THYIIYHSITAYIPKRKATMAKR*NTVTKS
Trigger: GGATTTAGTGACCGTATTCAATCTTTTTGCCATGGT...GGCCTTCCTTTTTGGAATGTACGCTGTTATGCTATGATAAATGATATAATGAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CAA 90 bp TATAAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCACCATGGCAAAAAGATaGAATACGGTCACTAAATCC +
Preference number: 5 (lower is better)
Translates to: YKIFTCNNSKCCKEQITSTMAKR*NTVTKS
Trigger: GGATTTAGTGACCGTATTCAATCTTTTTGCCATGGT...GCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTTATA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000590088.5
ENST00000592095.5
CDS-3UTR CAA 90 bp AAAATCTTCACATGTAACAACAGCAAGTGCTGTAAGGAACAGATTACAAGCTATTTTGATGATAATCTCTaGAGGAAGGAAAGAATCCTG +
Preference number: 5 (lower is better)
Translates to: KIFTCNNSKCCKEQITSYFDDNL*RKERIL
Trigger: CAGGATTCTTTCCTTCCTCAAGAGATTATCATCAAA...ATAGCTTGTAATCTGTTCCTTACAGCACTTGCTGTTGTTACATGTGAAGATTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000221327.8
ENST00000590088.5
ENST00000592095.5
CDS CCA 72 bp GCGCTGCCCCACGCCCCTACCAACCTGGGCGTCCGCTaGCCCGCAGCCCAGGCTGGGCCTGTCACCGCCTCA +
Preference number: 6 (lower is better)
Translates to: ALPHAPTNLGVR*PAAQAGPVTAS
Trigger: TGAGGCGGTGACAGGCCCAGCCTGGGCTGCGGGCCAGCGGACGCCCAGGTTGGTAGGGGCGTGGGGCAGCGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000585514.5
ENST00000587047.1
ENST00000590088.5
ENST00000590366.1
ENST00000592140.1
CDS GCA 72 bp GGCCCGCAGCCCAGGCTGGGCCTGTCACCGCCTCAGTaGCTAGCACGGCTCTGCGGCAGGACGAACTCGGGT +
Preference number: 6 (lower is better)
Translates to: GPQPRLGLSPPQ*LARLCGRTNSG
Trigger: ACCCGAGTTCGTCCTGCCGCAGAGCCGTGCTAGGCACTGAGGCGGTGACAGGCCCAGCCTGGGCTGCGGGCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000585514.5
ENST00000586637.5
ENST00000587047.1
ENST00000590088.5
ENST00000590366.1
ENST00000591064.1
ENST00000592095.5
ENST00000592140.1
ENST00000592529.6
CDS GCA 72 bp AGCACCGCTTCCAGCTTCCCGCGTAGACCCTGCGCATaGGCGCATCGGACACCAAGCGCTGCCCCACGCCCC +
Preference number: 6 (lower is better)
Translates to: STASSFPRRPCA*AHRTPSAAPRP
Trigger: GGGGCGTGGGGCAGCGCTTGGTGTCCGATGCGCGCATGCGCAGGGTCTACGCGGGAAGCTGGAAGCGGTGCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000592140.1
CDS GCA 72 bp CACACCGCTTCCAGCTTCCCGCGTAGACCCTGCGCATaGGCGCATCGGACACCAAGCGCTGCCCCACGCCCC +
Preference number: 6 (lower is better)
Translates to: HTASSFPRRPCA*AHRTPSAAPRP
Trigger: GGGGCGTGGGGCAGCGCTTGGTGTCCGATGCGCGCATGCGCAGGGTCTACGCGGGAAGCTGGAAGCGGTGTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000585514.5
ENST00000587047.1
ENST00000590088.5
ENST00000590366.1
CDS GCA 72 bp GCAAGGCCGCTGGGGGTTAAGTCTGAAGGGCCGAGCTaGTCGGCGACAGCAAGCGTCCGCGCGCGGGACAAT +
Preference number: 6 (lower is better)
Translates to: ARPLGVKSEGPS*SATASVRARDN
Trigger: ATTGTCCCGCGCGCGGACGCTTGCTGTCGCCGAGCAGCTCGGCCCTTCAGACTTAACCCCCAGCGGCCTTGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 10 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000585514.5
ENST00000586637.5
ENST00000587047.1
ENST00000590088.5
ENST00000590366.1
ENST00000591064.1
ENST00000592140.1
ENST00000592529.6
CDS GCA 72 bp GTCCTGAGCACCGCTTCCAGCTTCCCGCGTAGACCCTaGGCATGCGCGCATCGGACACCAAGCGCTGCCCCA +
Preference number: 6 (lower is better)
Translates to: VLSTASSFPRRP*ACAHRTPSAAP
Trigger: TGGGGCAGCGCTTGGTGTCCGATGCGCGCATGCGCAGGGTCTACGCGGGAAGCTGGAAGCGGTGCTCAGGAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000592140.1
CDS GCA 72 bp GAGCTGCACACCGCTTCCAGCTTCCCGCGTAGACCCTaGGCATGCGCGCATCGGACACCAAGCGCTGCCCCA +
Preference number: 6 (lower is better)
Translates to: ELHTASSFPRRP*ACAHRTPSAAP
Trigger: TGGGGCAGCGCTTGGTGTCCGATGCGCGCATGCGCAGGGTCTACGCGGGAAGCTGGAAGCGGTGTGCAGCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000585514.5
ENST00000587047.1
ENST00000590088.5
ENST00000590366.1
CDS CCA 72 bp TCGGTCCCCTCTCCTAGTCAGCATCCGCAAGGCCGCTaGGGGTTAAGTCTGAAGGGCCGAGCTGCTCGGCGA +
Preference number: 6 (lower is better)
Translates to: SVPSPSQHPQGR*GLSLKGRAARR
Trigger: TCGCCGAGCAGCTCGGCCCTTCAGACTTAACCCCCAGCGGCCTTGCGGATGCTGACTAGGAGAGGGGACCGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 11 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000585514.5
ENST00000586637.5
ENST00000587047.1
ENST00000590088.5
ENST00000590366.1
ENST00000591064.1
ENST00000592095.5
ENST00000592140.1
ENST00000592529.6
CDS GCA 72 bp GCACAGACCTTCGGGGGCTCTGGGGGCTTCTCATCCTaGTCTTCCATGCTCTCCTCCAGGCACAGCAGGGTG +
Preference number: 6 (lower is better)
Translates to: AQTFGGSGGFSS*SSMLSSRHSRV
Trigger: CACCCTGCTGTGCCTGGAGGAGAGCATGGAAGAGCAGGATGAGAAGCCCCCAGAGCCCCCGAAGGTCTGTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 11 transcripts:
ENST00000221327.8
ENST00000391956.8
ENST00000585514.5
ENST00000586637.5
ENST00000587047.1
ENST00000590088.5
ENST00000590366.1
ENST00000591064.1
ENST00000592095.5
ENST00000592140.1
ENST00000592529.6