Pregenerated sensors for ZBTB40-IT1 (Homo sapiens)
Ensembl gene IDs: ENSG00000237200Ensembl transcript IDs: ENST00000438551.1
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TGCAGCGGAACAGGTAAGGGGAATGCACTGAATGGAGCTTGGGTCTaGTGGATTGACACCTCTGCTGCAATTGACACGCTTTCCCAGTGC | + |
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Preference number: 5 (lower is better) Translates to: CSGTGKGNALNGAWV*WIDTSAAIDTLSQC Trigger: GCACTGGGAAAGCGTGTCAATTGCAGCAGAGGTGTCAATCCATCAGACCCAAGCTCCATTCAGTGCATTCCCCTTACCTGTTCCGCTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438551.1 |
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| CDS CAA 72 bp | GAGCTTGGGTCTGATGGATTGACACCTCTGCTGCAATaGACACGCTTTCCCAGTGCCAGGCTGGCACTGAGG | + |
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Preference number: 6 (lower is better) Translates to: ELGSDGLTPLLQ*TRFPSARLALR Trigger: CCTCAGTGCCAGCCTGGCACTGGGAAAGCGTGTCAATTGCAGCAGAGGTGTCAATCCATCAGACCCAAGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438551.1 |
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| CDS GCA 72 bp | ATTGACACCTCTGCTGCAATTGACACGCTTTCCCAGTaGCAGGCTGGCACTGAGGGCTTGAGATCCACAGTC | + |
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Preference number: 6 (lower is better) Translates to: IDTSAAIDTLSQ*QAGTEGLRSTV Trigger: GACTGTGGATCTCAAGCCCTCAGTGCCAGCCTGGCACTGGGAAAGCGTGTCAATTGCAGCAGAGGTGTCAAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438551.1 |
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| CDS TCA 72 bp | CTGGGTTTTGCAGCGGAACAGGTAAGGGGAATGCACTaGATGGAGCTTGGGTCTGATGGATTGACACCTCTG | + |
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Preference number: 6 (lower is better) Translates to: LGFAAEQVRGMH*MELGSDGLTPL Trigger: CAGAGGTGTCAATCCATCAGACCCAAGCTCCATTCAGTGCATTCCCCTTACCTGTTCCGCTGCAAAACCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000438551.1 |
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| CDS TCA 72 bp | ACAGGTAAGGGGAATGCACTGAATGGAGCTTGGGTCTaGTGGATTGACACCTCTGCTGCAATTGACACGCTT | + |
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Preference number: 6 (lower is better) Translates to: TGKGNALNGAWV*WIDTSAAIDTL Trigger: AAGCGTGTCAATTGCAGCAGAGGTGTCAATCCATCAGACCCAAGCTCCATTCAGTGCATTCCCCTTACCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438551.1 |
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| CDS CAA 72 bp | ATTTCCAGCACACTCCCCAGAGCATCACTAATTCCTTaGTCATCAACAGCACAAGTGGAGGGATGCTTCCTT | + |
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Preference number: 6 (lower is better) Translates to: ISSTLPRASLIP*SSTAQVEGCFL Trigger: AAGGAAGCATCCCTCCACTTGTGCTGTTGATGACAAAGGAATTAGTGATGCTCTGGGGAGTGTGCTGGAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438551.1 |
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