RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for YBX3 (Homo sapiens)

Ensembl gene IDs: ENSG00000060138

Ensembl transcript IDs: ENST00000536823.5, ENST00000539204.5, ENST00000540447.5, ENST00000540747.1, ENST00000542002.5, ENST00000544622.4, ENST00000546298.5

Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGCATTCTCTCAGAAGTATATGGTGGGGTCTCCCAAAGGCTACAATaGCATGTGGTCTCTCAGCAGACTGAATGCAGAAACAGATGTGAG +
Preference number: 1 (lower is better)
Translates to: GILSEVYGGVSQRLQ*HVVSQQTECRNRCE
Trigger: CTCACATCTGTTTCTGCATTCAGTCTGCTGAGAGACCACATGTCATTGTAGCCTTTGGGAGACCCCACCATATACTTCTGAGAGAATGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544622.4
3UTR CCA 90 bp AAGATGCTATTTGCCTTTCCCAGGCATTCTCTCAGAAGTATATGGTaGGGTCTCCCAAAGGCTACAATGACATGTGGTCTCTCAGCAGAC +
Preference number: 1 (lower is better)
Translates to: KMLFAFPRHSLRSIW*GLPKATMTCGLSAD
Trigger: GTCTGCTGAGAGACCACATGTCATTGTAGCCTTTGGGAGACCCCACCATATACTTCTGAGAGAATGCCTGGGAAAGGCAAATAGCATCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000544622.4
3UTR CCA 90 bp TCTCAGAAGTATATGGTGGGGTCTCCCAAAGGCTACAATGACATGTaGTCTCTCAGCAGACTGAATGCAGAAACAGATGTGAGAATCCAG +
Preference number: 1 (lower is better)
Translates to: SQKYMVGSPKGYNDM*SLSRLNAETDVRIQ
Trigger: CTGGATTCTCACATCTGTTTCTGCATTCAGTCTGCTGAGAGACCACATGTCATTGTAGCCTTTGGGAGACCCCACCATATACTTCTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544622.4
3UTR GCA 90 bp CACCCGAAGAGTATCTGCAAGGTTTATAATTTTTGCTCCATCAAATaGGTGTCTCCCAGCATTTACCATCCACTGAGGCAATGTCAGGGA +
Preference number: 1 (lower is better)
Translates to: HPKSICKVYNFCSIK*VSPSIYHPLRQCQG
Trigger: TCCCTGACATTGCCTCAGTGGATGGTAAATGCTGGGAGACACGCATTTGATGGAGCAAAAATTATAAACCTTGCAGATACTCTTCGGGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000544622.4
3UTR GCA 90 bp CAGCTAACCAACCACCCGAAGAGTATCTGCAAGGTTTATAATTTTTaGTCCATCAAATGCGTGTCTCCCAGCATTTACCATCCACTGAGG +
Preference number: 1 (lower is better)
Translates to: QLTNHPKSICKVYNF*SIKCVSPSIYHPLR
Trigger: CCTCAGTGGATGGTAAATGCTGGGAGACACGCATTTGATGGAGCAAAAATTATAAACCTTGCAGATACTCTTCGGGTGGTTGGTTAGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000544622.4
3UTR CCA 90 bp ACATATTTGACCCAAGTGGTATTCTTCCTACAAGTCTGTAAAGTGTaGATGGGATTTCTGAAAACTTCCAGGGGGTCAGCGAGGTCAAAC +
Preference number: 1 (lower is better)
Translates to: TYLTQVVFFLQVCKV*MGFLKTSRGSARSN
Trigger: GTTTGACCTCGCTGACCCCCTGGAAGTTTTCAGAAATCCCATCCACACTTTACAGACTTGTAGGAAGAATACCACTTGGGTCAAATATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000544622.4
3UTR TCA 90 bp AAGTGGTATTCTTCCTACAAGTCTGTAAAGTGTGGATGGGATTTCTaGAAACTTCCAGGGGGTCAGCGAGGTCAAACTATTGCCATAATA +
Preference number: 1 (lower is better)
Translates to: KWYSSYKSVKCGWDF*KLPGGQRGQTIAII
Trigger: TATTATGGCAATAGTTTGACCTCGCTGACCCCCTGGAAGTTTTCAGAAATCCCATCCACACTTTACAGACTTGTAGGAAGAATACCACTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000544622.4
3UTR GCA 90 bp ATGGGATTTCTGAAAACTTCCAGGGGGTCAGCGAGGTCAAACTATTaGCATAATATTACTAAGATGCTATTTGCCTTTCCCAGGCATTCT +
Preference number: 1 (lower is better)
Translates to: MGFLKTSRGSARSNY*HNITKMLFAFPRHS
Trigger: AGAATGCCTGGGAAAGGCAAATAGCATCTTAGTAATATTATGGCAATAGTTTGACCTCGCTGACCCCCTGGAAGTTTTCAGAAATCCCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000544622.4
3UTR-3UTR CCA 90 bp CAAATGCGTGTCTCCCAGCATTTACCATCCACTGAGGCAATGTCAGGGAAAAGCGGCTACAATGACATGTaGTCTCTCAGCAGACTGAAT +
Preference number: 2 (lower is better)
Translates to: QMRVSQHLPSTEAMSGKSGYNDM*SLSRLN
Trigger: ATTCAGTCTGCTGAGAGACCACATGTCATTGTAGCC...GCTTTTCCCTGACATTGCCTCAGTGGATGGTAAATGCTGGGAGACACGCATTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544622.4
3UTR-3UTR GCA 90 bp TGCCTTTCCCAGGCATTCTCTCAGAAGTATATGGTGGGGTCTCCCAAAGGCTACTCTCAGCAGACTGAATaGAGAAACAGATGTGAGAAT +
Preference number: 2 (lower is better)
Translates to: CLSQAFSQKYMVGSPKGYSQQTE*RNRCEN
Trigger: ATTCTCACATCTGTTTCTGCATTCAGTCTGCTGAGA...GTAGCCTTTGGGAGACCCCACCATATACTTCTGAGAGAATGCCTGGGAAAGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544622.4
3UTR CAA 90 bp GGTCAGCGAGGTCAAACTATTGCCATAATATTACTAAGATGCTATTaGCCTTTCCCAGGCATTCTCTCAGAAGTATATGGTGGGGTCTCC +
Preference number: 2 (lower is better)
Translates to: GQRGQTIAIILLRCY*PFPGILSEVYGGVS
Trigger: GGAGACCCCACCATATACTTCTGAGAGAATGCCTGGGAAAGGCAAATAGCATCTTAGTAATATTATGGCAATAGTTTGACCTCGCTGACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544622.4
3UTR CCA 72 bp TATATGGTGGGGTCTCCCAAAGGCTACAATGACATGTaGTCTCTCAGCAGACTGAATGCAGAAACAGATGTG +
Preference number: 3 (lower is better)
Translates to: YMVGSPKGYNDM*SLSRLNAETDV
Trigger: CACATCTGTTTCTGCATTCAGTCTGCTGAGAGACCACATGTCATTGTAGCCTTTGGGAGACCCCACCATATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544622.4
3UTR CCA 72 bp CTATTTGCCTTTCCCAGGCATTCTCTCAGAAGTATATaGTGGGGTCTCCCAAAGGCTACAATGACATGTGGT +
Preference number: 3 (lower is better)
Translates to: LFAFPRHSLRSI*WGLPKATMTCG
Trigger: ACCACATGTCATTGTAGCCTTTGGGAGACCCCACCATATACTTCTGAGAGAATGCCTGGGAAAGGCAAATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544622.4
3UTR-3UTR CAA 90 bp CCGAAGAGTATCTGCAAGGTTTATAATTTTTGCTCCATCAAATGCGTGTCTCCCTTACTAAGATGCTATTaGCCTTTCCCAGGCATTCTC +
Preference number: 3 (lower is better)
Translates to: PKSICKVYNFCSIKCVSPLLRCY*PFPGIL
Trigger: GAGAATGCCTGGGAAAGGCAAATAGCATCTTAGTAA...GGGAGACACGCATTTGATGGAGCAAAAATTATAAACCTTGCAGATACTCTTCGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000544622.4
3UTR GCA 72 bp AGTATCTGCAAGGTTTATAATTTTTGCTCCATCAAATaGGTGTCTCCCAGCATTTACCATCCACTGAGGCAA +
Preference number: 3 (lower is better)
Translates to: SICKVYNFCSIK*VSPSIYHPLRQ
Trigger: TTGCCTCAGTGGATGGTAAATGCTGGGAGACACGCATTTGATGGAGCAAAAATTATAAACCTTGCAGATACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000544622.4
3UTR GCA 72 bp AACCACCCGAAGAGTATCTGCAAGGTTTATAATTTTTaGTCCATCAAATGCGTGTCTCCCAGCATTTACCAT +
Preference number: 3 (lower is better)
Translates to: NHPKSICKVYNF*SIKCVSPSIYH
Trigger: ATGGTAAATGCTGGGAGACACGCATTTGATGGAGCAAAAATTATAAACCTTGCAGATACTCTTCGGGTGGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000544622.4
3UTR GCA 72 bp AACTCGTATCAGCTAACCAACCACCCGAAGAGTATCTaGAAGGTTTATAATTTTTGCTCCATCAAATGCGTG +
Preference number: 3 (lower is better)
Translates to: NSYQLTNHPKSI*KVYNFCSIKCV
Trigger: CACGCATTTGATGGAGCAAAAATTATAAACCTTGCAGATACTCTTCGGGTGGTTGGTTAGCTGATACGAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000544622.4
CDS-3UTR GCA 90 bp GCCTTTCCCAGGCATTCTCTCAGAAGTATATGGTGGGGTCTCCCAAAGGCTACAGTAACGGCGCCGATCTaGAGCGTAACGACTCCCTTC +
Preference number: 4 (lower is better)
Translates to: AFPRHSLRSIWWGLPKATVTAPI*SVTTPF
Trigger: GAAGGGAGTCGTTACGCTGCAGATCGGCGCCGTTAC...TGTAGCCTTTGGGAGACCCCACCATATACTTCTGAGAGAATGCCTGGGAAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544622.4
CDS-3UTR TCA 90 bp GCCTTTCCCAGGCATTCTCTCAGAAGTATATGGTGGGGTCTCCCAAAGGCTACAATGCAGAAACAGATGTaGGAATCCAGCTATCTTCTA +
Preference number: 4 (lower is better)
Translates to: AFPRHSLRSIWWGLPKATMQKQM*ESSYLL
Trigger: TAGAAGATAGCTGGATTCTCACATCTGTTTCTGCAT...TGTAGCCTTTGGGAGACCCCACCATATACTTCTGAGAGAATGCCTGGGAAAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544622.4
CDS-3UTR GCA 90 bp CAAATGCGTGTCTCCCAGCATTTACCATCCACTGAGGCAATGTCAGGGAAAAGCTCTCAGCAGACTGAATaGAGAAACAGATGTGAGAAT +
Preference number: 4 (lower is better)
Translates to: QMRVSQHLPSTEAMSGKSSQQTE*RNRCEN
Trigger: ATTCTCACATCTGTTTCTGCATTCAGTCTGCTGAGA...GCTTTTCCCTGACATTGCCTCAGTGGATGGTAAATGCTGGGAGACACGCATTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544622.4
CDS-3UTR CCA 90 bp GCCTTTCCCAGGCATTCTCTCAGAAGTATATGGTGGGGTCTCCCAAAGGCTACACAAGTCTGTAAAGTGTaGATGGGATTTCTGAAAACT +
Preference number: 4 (lower is better)
Translates to: AFPRHSLRSIWWGLPKATQVCKV*MGFLKT
Trigger: AGTTTTCAGAAATCCCATCCACACTTTACAGACTTG...TGTAGCCTTTGGGAGACCCCACCATATACTTCTGAGAGAATGCCTGGGAAAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544622.4
CDS-3UTR TCA 90 bp CAAACTATTGCCATAATATTACTAAGATGCTATTTGCCTTTCCCAGGCATTCTCTGTGGATGGGATTTCTaGAAACTTCCAGGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: QTIAIILLRCYLPFPGILCGWDF*KLPGGQ
Trigger: CTGACCCCCTGGAAGTTTTCAGAAATCCCATCCACA...GAGAATGCCTGGGAAAGGCAAATAGCATCTTAGTAATATTATGGCAATAGTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000544622.4
CDS-3UTR TCA 90 bp CAAGTGGTATTCTTCCTACAAGTCTGTAAAGTGTGGATGGGATTTCTGAAAACTGCATTTACCATCCACTaGGGCAATGTCAGGGAAAAG +
Preference number: 4 (lower is better)
Translates to: QVVFFLQVCKVWMGFLKTAFTIH*GNVREK
Trigger: CTTTTCCCTGACATTGCCTCAGTGGATGGTAAATGC...AGTTTTCAGAAATCCCATCCACACTTTACAGACTTGTAGGAAGAATACCACTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544622.4
CDS-3UTR GCA 90 bp TATTTGCCTTTCCCAGGCATTCTCTCAGAAGTATATGGTGGGGTCTCCCAAAGGATAATATTACTAAGATaGTATTTGCCTTTCCCAGGC +
Preference number: 4 (lower is better)
Translates to: YLPFPGILSEVYGGVSQRIILLR*YLPFPG
Trigger: GCCTGGGAAAGGCAAATAGCATCTTAGTAATATTAT...CCTTTGGGAGACCCCACCATATACTTCTGAGAGAATGCCTGGGAAAGGCAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544622.4
CDS-3UTR GCA 90 bp CCAACCACCCGAAGAGTATCTGCAAGGTTTATAATTTTTGCTCCATCAAATGCGTTTTGCTCCATCAAATaGGTGTCTCCCAGCATTTAC +
Preference number: 4 (lower is better)
Translates to: PTTRRVSARFIIFAPSNAFCSIK*VSPSIY
Trigger: GTAAATGCTGGGAGACACGCATTTGATGGAGCAAAA...CGCATTTGATGGAGCAAAAATTATAAACCTTGCAGATACTCTTCGGGTGGTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000544622.4
CDS-3UTR TCA 90 bp CCAACCACCCGAAGAGTATCTGCAAGGTTTATAATTTTTGCTCCATCAAATGCGTGTTACCAACATATTTaGCCCAAGTGGTATTCTTCC +
Preference number: 4 (lower is better)
Translates to: PTTRRVSARFIIFAPSNACYQHI*PKWYSS
Trigger: GGAAGAATACCACTTGGGTCAAATATGTTGGTAACA...CGCATTTGATGGAGCAAAAATTATAAACCTTGCAGATACTCTTCGGGTGGTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000544622.4
CDS CCA 90 bp CGTGCGTTCCCACAGTCCGGGAAGAGGGAAGCGTGTAGCCATTGGTaGACACTGAATGGCTGTTTGCAGCCGTGGGCACAGAGAGGGGGA +
Preference number: 5 (lower is better)
Translates to: RAFPQSGKREACSHW*TLNGCLQPWAQRGG
Trigger: TCCCCCTCTCTGTGCCCACGGCTGCAAACAGCCATTCAGTGTCCACCAATGGCTACACGCTTCCCTCTTCCCGGACTGTGGGAACGCACG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000540747.1
CDS CCA 90 bp CCACGTGCGTTCCCACAGTCCGGGAAGAGGGAAGCGTGTAGCCATTaGTGGACACTGAATGGCTGTTTGCAGCCGTGGGCACAGAGAGGG +
Preference number: 5 (lower is better)
Translates to: PRAFPQSGKREACSH*WTLNGCLQPWAQRG
Trigger: CCCTCTCTGTGCCCACGGCTGCAAACAGCCATTCAGTGTCCACCAATGGCTACACGCTTCCCTCTTCCCGGACTGTGGGAACGCACGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540747.1
CDS TCA 90 bp TCCCACAGTCCGGGAAGAGGGAAGCGTGTAGCCATTGGTGGACACTaGATGGCTGTTTGCAGCCGTGGGCACAGAGAGGGGGAGGAAGAC +
Preference number: 5 (lower is better)
Translates to: SHSPGRGKRVAIGGH*MAVCSRGHREGEED
Trigger: GTCTTCCTCCCCCTCTCTGTGCCCACGGCTGCAAACAGCCATTCAGTGTCCACCAATGGCTACACGCTTCCCTCTTCCCGGACTGTGGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000540747.1
CDS TCA 90 bp CGTCTTTCCCATGCCCATGTGGGAAGGGCGTCAGGGACAGACACCTaGCCCTTCCTGGCAAGAAGCTTTTCTATCTTTCCCTCCCCGTCT +
Preference number: 5 (lower is better)
Translates to: RLSHAHVGRASGTDT*PFLARSFSIFPSPS
Trigger: AGACGGGGAGGGAAAGATAGAAAAGCTTCTTGCCAGGAAGGGTCAGGTGTCTGTCCCTGACGCCCTTCCCACATGGGCATGGGAAAGACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000540747.1
CDS GCA 90 bp GGGGAGGAAGACGTGGGACTAAGACCCAAGTTTCCCGGAGACGATTaGAACATCTCTTTGCTGGCATGTGGCCAACAGGAGCATGGCGTC +
Preference number: 5 (lower is better)
Translates to: GEEDVGLRPKFPGDD*NISLLACGQQEHGV
Trigger: GACGCCATGCTCCTGTTGGCCACATGCCAGCAAAGAGATGTTGCAATCGTCTCCGGGAAACTTGGGTCTTAGTCCCACGTCTTCCTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540747.1
CDS CCA 90 bp AGACGATTGCAACATCTCTTTGCTGGCATGTGGCCAACAGGAGCATaGCGTCTTTCCCATGCCCATGTGGGAAGGGCGTCAGGGACAGAC +
Preference number: 5 (lower is better)
Translates to: RRLQHLFAGMWPTGA*RLSHAHVGRASGTD
Trigger: GTCTGTCCCTGACGCCCTTCCCACATGGGCATGGGAAAGACGCCATGCTCCTGTTGGCCACATGCCAGCAAAGAGATGTTGCAATCGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540747.1
CDS CCA 90 bp ACCCAAGTTTCCCGGAGACGATTGCAACATCTCTTTGCTGGCATGTaGCCAACAGGAGCATGGCGTCTTTCCCATGCCCATGTGGGAAGG +
Preference number: 5 (lower is better)
Translates to: TQVSRRRLQHLFAGM*PTGAWRLSHAHVGR
Trigger: CCTTCCCACATGGGCATGGGAAAGACGCCATGCTCCTGTTGGCCACATGCCAGCAAAGAGATGTTGCAATCGTCTCCGGGAAACTTGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540747.1
CDS CCA 90 bp ACCACACAGTCCTCATTCTACCATTGTGCACACAAGTCCTTTAACTaGCCATTAGTGGAAAATGCGACATACCTACGGTACCTTGGGCGG +
Preference number: 5 (lower is better)
Translates to: TTQSSFYHCAHKSFN*PLVENATYLRYLGR
Trigger: CCGCCCAAGGTACCGTAGGTATGTCGCATTTTCCACTAATGGCCAGTTAAAGGACTTGTGTGCACAATGGTAGAATGAGGACTGTGTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540447.5
CDS TCA 90 bp AAGTTTCTCATGACCACAAATATACTGGGTCCGTTTTGGGTGCCTTaGGAATACTCCTATAAACTGAGCCTCCCAAGAAAGCTCCAGCCA +
Preference number: 5 (lower is better)
Translates to: KFLMTTNILGPFWVP*EYSYKLSLPRKLQP
Trigger: TGGCTGGAGCTTTCTTGGGAGGCTCAGTTTATAGGAGTATTCTCAAGGCACCCAAAACGGACCCAGTATATTTGTGGTCATGAGAAACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540447.5
CDS TCA 90 bp AGATCACATATCCAGGGACTGACAAAGCTGAGCCTCACACGCTACTaGATCCTTTTTGTTCCAGTAAGACATTTCTATGCCGTCTCTTTT +
Preference number: 5 (lower is better)
Translates to: RSHIQGLTKLSLTRY*ILFVPVRHFYAVSF
Trigger: AAAAGAGACGGCATAGAAATGTCTTACTGGAACAAAAAGGATTCAGTAGCGTGTGAGGCTCAGCTTTGTCAGTCCCTGGATATGTGATCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000540447.5
CDS-3UTR CAA 90 bp TATTTGCCTTTCCCAGGCATTCTCTCAGAAGTATATGGTGGGGTCTCCCAAAGGATGTTACCAACATATTaGACCCAAGTGGTATTCTTC +
Preference number: 5 (lower is better)
Translates to: YLPFPGILSEVYGGVSQRMLPTY*TQVVFF
Trigger: GAAGAATACCACTTGGGTCAAATATGTTGGTAACAT...CCTTTGGGAGACCCCACCATATACTTCTGAGAGAATGCCTGGGAAAGGCAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544622.4
CDS GCA 90 bp AGTCACTATCCCAAATATCCTCTGACACTCAATTCTTCCTCCATCTaGAGCATTACCACAGAATTGCCCACCAATAATTTATCTGATTTA +
Preference number: 5 (lower is better)
Translates to: SHYPKYPLTLNSSSI*SITTELPTNNLSDL
Trigger: TAAATCAGATAAATTATTGGTGGGCAATTCTGTGGTAATGCTGCAGATGGAGGAAGAATTGAGTGTCAGAGGATATTTGGGATAGTGACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540447.5
CDS-3UTR CAA 90 bp GGTCAAACTATTGCCATAATATTACTAAGATGCTATTTGCCTTTCCCAGGCATTTTACTAAGATGCTATTaGCCTTTCCCAGGCATTCTC +
Preference number: 5 (lower is better)
Translates to: GQTIAIILLRCYLPFPGILLRCY*PFPGIL
Trigger: GAGAATGCCTGGGAAAGGCAAATAGCATCTTAGTAA...AATGCCTGGGAAAGGCAAATAGCATCTTAGTAATATTATGGCAATAGTTTGACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544622.4
CDS GCA 90 bp ACGACTGAAAAGGAAGACAAACCTAGTCTGACTAGAATACTCATTTaGTTAGTCCCAGAGCACCTAACTTTATTTTCGCCTATCAATTTA +
Preference number: 5 (lower is better)
Translates to: TTEKEDKPSLTRILI*LVPEHLTLFSPINL
Trigger: TAAATTGATAGGCGAAAATAAAGTTAGGTGCTCTGGGACTAAGCAAATGAGTATTCTAGTCAGACTAGGTTTGTCTTCCTTTTCAGTCGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000536823.5
CDS CCA 90 bp AAGAATGGGCAGGCTTATATTATAAAATGCTTCAAAGGGATCTTATaGAAGGAGTCTAGCCTAATTCAGTCTTCCAAAGGAATAAAGCAC +
Preference number: 5 (lower is better)
Translates to: KNGQAYIIKCFKGIL*KESSLIQSSKGIKH
Trigger: GTGCTTTATTCCTTTGGAAGACTGAATTAGGCTAGACTCCTTCCATAAGATCCCTTTGAAGCATTTTATAATATAAGCCTGCCCATTCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540447.5
CDS TCA 90 bp TTACAAAGCATAATAATGGCACCAGCAATGCTGAACACACTCTTTTaGGAGATACTGAACAAGTTGTTGGGACTTAGATATTACAACAAA +
Preference number: 5 (lower is better)
Translates to: LQSIIMAPAMLNTLF*EILNKLLGLRYYNK
Trigger: TTTGTTGTAATATCTAAGTCCCAACAACTTGTTCAGTATCTCTCAAAAGAGTGTGTTCAGCATTGCTGGTGCCATTATTATGCTTTGTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540447.5
CDS TCA 90 bp CCTTTCCATTATACAGACAAAATGCATTTAACCCAGATTATCATGTaGTTGCCTGGGATAAACTACATTAAGATTAGAGTAGATCTGTGC +
Preference number: 5 (lower is better)
Translates to: PFHYTDKMHLTQIIM*LPGINYIKIRVDLC
Trigger: GCACAGATCTACTCTAATCTTAATGTAGTTTATCCCAGGCAATCACATGATAATCTGGGTTAAATGCATTTTGTCTGTATAATGGAAAGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540447.5
CDS GCA 90 bp AATCACTTAAATCATTTGTCTCCAGGAGAAGACAAGGCATTTATCTaGTCCAAGTACATACACTTAATTCCATGCATGAACAATTTCTCA +
Preference number: 5 (lower is better)
Translates to: NHLNHLSPGEDKAFI*SKYIHLIPCMNNFS
Trigger: TGAGAAATTGTTCATGCATGGAATTAAGTGTATGTACTTGGAGCAGATAAATGCCTTGTCTTCTCCTGGAGACAAATGATTTAAGTGATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540447.5
CDS CCA 90 bp AAACTGTTGACCGATTCTTATTTTTCCACCATTCTCCCACTAAGTTaGATCTCCAACACAACAACAAGAAAGCACTATAAAACTATATTC +
Preference number: 5 (lower is better)
Translates to: KLLTDSYFSTILPLS*ISNTTTRKHYKTIF
Trigger: GAATATAGTTTTATAGTGCTTTCTTGTTGTTGTGTTGGAGATCCAACTTAGTGGGAGAATGGTGGAAAAATAAGAATCGGTCAACAGTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000542002.5
CDS TCA 72 bp CCGGGAAGAGGGAAGCGTGTAGCCATTGGTGGACACTaGATGGCTGTTTGCAGCCGTGGGCACAGAGAGGGG +
Preference number: 6 (lower is better)
Translates to: PGRGKRVAIGGH*MAVCSRGHREG
Trigger: CCCCTCTCTGTGCCCACGGCTGCAAACAGCCATTCAGTGTCCACCAATGGCTACACGCTTCCCTCTTCCCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540747.1
CDS CCA 72 bp CCACAGTCCGGGAAGAGGGAAGCGTGTAGCCATTGGTaGACACTGAATGGCTGTTTGCAGCCGTGGGCACAG +
Preference number: 6 (lower is better)
Translates to: PQSGKREACSHW*TLNGCLQPWAQ
Trigger: CTGTGCCCACGGCTGCAAACAGCCATTCAGTGTCCACCAATGGCTACACGCTTCCCTCTTCCCGGACTGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540747.1
CDS CCA 72 bp TTCCCACAGTCCGGGAAGAGGGAAGCGTGTAGCCATTaGTGGACACTGAATGGCTGTTTGCAGCCGTGGGCA +
Preference number: 6 (lower is better)
Translates to: FPQSGKREACSH*WTLNGCLQPWA
Trigger: TGCCCACGGCTGCAAACAGCCATTCAGTGTCCACCAATGGCTACACGCTTCCCTCTTCCCGGACTGTGGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540747.1
CDS CAA 90 bp GGGGGAGGAAGACGTGGGACTAAGACCCAAGTTTCCCGGAGACGATaGCAACATCTCTTTGCTGGCATGTGGCCAACAGGAGCATGGCGT +
Preference number: 6 (lower is better)
Translates to: GGGRRGTKTQVSRRR*QHLFAGMWPTGAWR
Trigger: ACGCCATGCTCCTGTTGGCCACATGCCAGCAAAGAGATGTTGCAATCGTCTCCGGGAAACTTGGGTCTTAGTCCCACGTCTTCCTCCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000540747.1
CDS CCA 72 bp CAACATCTCTTTGCTGGCATGTGGCCAACAGGAGCATaGCGTCTTTCCCATGCCCATGTGGGAAGGGCGTCA +
Preference number: 6 (lower is better)
Translates to: QHLFAGMWPTGA*RLSHAHVGRAS
Trigger: TGACGCCCTTCCCACATGGGCATGGGAAAGACGCCATGCTCCTGTTGGCCACATGCCAGCAAAGAGATGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540747.1
CDS CAA 90 bp GTGGGACTAAGACCCAAGTTTCCCGGAGACGATTGCAACATCTCTTaGCTGGCATGTGGCCAACAGGAGCATGGCGTCTTTCCCATGCCC +
Preference number: 6 (lower is better)
Translates to: VGLRPKFPGDDCNIS*LACGQQEHGVFPMP
Trigger: GGGCATGGGAAAGACGCCATGCTCCTGTTGGCCACATGCCAGCAAAGAGATGTTGCAATCGTCTCCGGGAAACTTGGGTCTTAGTCCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540747.1
CDS CCA 72 bp TCCCGGAGACGATTGCAACATCTCTTTGCTGGCATGTaGCCAACAGGAGCATGGCGTCTTTCCCATGCCCAT +
Preference number: 6 (lower is better)
Translates to: SRRRLQHLFAGM*PTGAWRLSHAH
Trigger: ATGGGCATGGGAAAGACGCCATGCTCCTGTTGGCCACATGCCAGCAAAGAGATGTTGCAATCGTCTCCGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540747.1
CDS GCA 72 bp GACCCAAGTTTCCCGGAGACGATTGCAACATCTCTTTaGTGGCATGTGGCCAACAGGAGCATGGCGTCTTTC +
Preference number: 6 (lower is better)
Translates to: DPSFPETIATSL*WHVANRSMASF
Trigger: GAAAGACGCCATGCTCCTGTTGGCCACATGCCAGCAAAGAGATGTTGCAATCGTCTCCGGGAAACTTGGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540747.1
CDS GCA 72 bp GACGTGGGACTAAGACCCAAGTTTCCCGGAGACGATTaGAACATCTCTTTGCTGGCATGTGGCCAACAGGAG +
Preference number: 6 (lower is better)
Translates to: DVGLRPKFPGDD*NISLLACGQQE
Trigger: CTCCTGTTGGCCACATGCCAGCAAAGAGATGTTGCAATCGTCTCCGGGAAACTTGGGTCTTAGTCCCACGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540747.1
CDS CCA 72 bp CCAAGTTTCCCGGAGACGATTGCAACATCTCTTTGCTaGCATGTGGCCAACAGGAGCATGGCGTCTTTCCCA +
Preference number: 6 (lower is better)
Translates to: PSFPETIATSLC*HVANRSMASFP
Trigger: TGGGAAAGACGCCATGCTCCTGTTGGCCACATGCCAGCAAAGAGATGTTGCAATCGTCTCCGGGAAACTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540747.1
CDS TCA 72 bp GTCCGTTTTGGGTGCCTTGAGAATACTCCTATAAACTaGGCCTCCCAAGAAAGCTCCAGCCAGATTTGTGAC +
Preference number: 6 (lower is better)
Translates to: VRFGCLENTPIN*ASQESSSQICD
Trigger: GTCACAAATCTGGCTGGAGCTTTCTTGGGAGGCTCAGTTTATAGGAGTATTCTCAAGGCACCCAAAACGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540447.5
CDS TCA 72 bp ATCCAGGGACTGACAAAGCTGAGCCTCACACGCTACTaGATCCTTTTTGTTCCAGTAAGACATTTCTATGCC +
Preference number: 6 (lower is better)
Translates to: IQGLTKLSLTRY*ILFVPVRHFYA
Trigger: GGCATAGAAATGTCTTACTGGAACAAAAAGGATTCAGTAGCGTGTGAGGCTCAGCTTTGTCAGTCCCTGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000540447.5
CDS TCA 72 bp ATGACCACAAATATACTGGGTCCGTTTTGGGTGCCTTaGGAATACTCCTATAAACTGAGCCTCCCAAGAAAG +
Preference number: 6 (lower is better)
Translates to: MTTNILGPFWVP*EYSYKLSLPRK
Trigger: CTTTCTTGGGAGGCTCAGTTTATAGGAGTATTCTCAAGGCACCCAAAACGGACCCAGTATATTTGTGGTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540447.5
CDS CCA 72 bp TCCTCATTCTACCATTGTGCACACAAGTCCTTTAACTaGCCATTAGTGGAAAATGCGACATACCTACGGTAC +
Preference number: 6 (lower is better)
Translates to: SSFYHCAHKSFN*PLVENATYLRY
Trigger: GTACCGTAGGTATGTCGCATTTTCCACTAATGGCCAGTTAAAGGACTTGTGTGCACAATGGTAGAATGAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540447.5
CDS CCA 72 bp GTAGCCAAATATATCCTAACTGATACAACTTCTGAATaGCAAGTGTCTAATGAGACCAGCGGCTCTGGAAAA +
Preference number: 6 (lower is better)
Translates to: VAKYILTDTTSE*QVSNETSGSGK
Trigger: TTTTCCAGAGCCGCTGGTCTCATTAGACACTTGCCATTCAGAAGTTGTATCAGTTAGGATATATTTGGCTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540447.5
CDS CAA 90 bp GATTTCACTGCTTTCAAGTACACCAGAGTGAACTTGAAGAAACTGTaGACCGATTCTTATTTTTCCACCATTCTCCCACTAAGTTGGATC +
Preference number: 6 (lower is better)
Translates to: DFTAFKYTRVNLKKL*TDSYFSTILPLSWI
Trigger: GATCCAACTTAGTGGGAGAATGGTGGAAAAATAAGAATCGGTCAACAGTTTCTTCAAGTTCACTCTGGTGTACTTGAAAGCAGTGAAATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000542002.5
CDS CAA 90 bp ATATTGGCCACAGATTTCACTGCTTTCAAGTACACCAGAGTGAACTaGAAGAAACTGTTGACCGATTCTTATTTTTCCACCATTCTCCCA +
Preference number: 6 (lower is better)
Translates to: ILATDFTAFKYTRVN*KKLLTDSYFSTILP
Trigger: TGGGAGAATGGTGGAAAAATAAGAATCGGTCAACAGTTTCTTCAAGTTCACTCTGGTGTACTTGAAAGCAGTGAAATCTGTGGCCAATAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000542002.5
CDS TCA 72 bp TGTCATTTAGAAACATCCCGTTCCTCTGTCTCTTTCTaGATCACATGGTGTGTAATCAGAGCCTCAGATTTT +
Preference number: 6 (lower is better)
Translates to: CHLETSRSSVSF*ITWCVIRASDF
Trigger: AAAATCTGAGGCTCTGATTACACACCATGTGATTCAGAAAGAGACAGAGGAACGGGATGTTTCTAAATGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000539204.5
CDS TCA 72 bp TCCAGCCAGATTTGTGACAAACTCTTTCCCCTGCATTaGAACCAACCTAAAGAACTAAAAATCCACAGAATC +
Preference number: 6 (lower is better)
Translates to: SSQICDKLFPLH*NQPKELKIHRI
Trigger: GATTCTGTGGATTTTTAGTTCTTTAGGTTGGTTTCAATGCAGGGGAAAGAGTTTGTCACAAATCTGGCTGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000540447.5
CDS GCA 72 bp AAGGAAGACAAACCTAGTCTGACTAGAATACTCATTTaGTTAGTCCCAGAGCACCTAACTTTATTTTCGCCT +
Preference number: 6 (lower is better)
Translates to: KEDKPSLTRILI*LVPEHLTLFSP
Trigger: AGGCGAAAATAAAGTTAGGTGCTCTGGGACTAAGCAAATGAGTATTCTAGTCAGACTAGGTTTGTCTTCCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000536823.5
CDS GCA 72 bp TCCTGTGCTGACAAACATTCGGAGTTTTCTTCAATGTaGCAATACCTGGTTCTAATTCTAGAAACACCAAGA +
Preference number: 6 (lower is better)
Translates to: SCADKHSEFSSM*QYLVLILETPR
Trigger: TCTTGGTGTTTCTAGAATTAGAACCAGGTATTGGCACATTGAAGAAAACTCCGAATGTTTGTCAGCACAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540447.5
CDS TCA 72 bp AACCCACTTCATATACAGAAAAGAACGCTTGTTATGTaGCTAAACCAACAACCATCACAGAAACCCTTTCCA +
Preference number: 6 (lower is better)
Translates to: NPLHIQKRTLVM*LNQQPSQKPFP
Trigger: TGGAAAGGGTTTCTGTGATGGTTGTTGGTTTAGTCACATAACAAGCGTTCTTTTCTGTATATGAAGTGGGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546298.5
CDS GCA 72 bp AATCATTTGTCTCCAGGAGAAGACAAGGCATTTATCTaGTCCAAGTACATACACTTAATTCCATGCATGAAC +
Preference number: 6 (lower is better)
Translates to: NHLSPGEDKAFI*SKYIHLIPCMN
Trigger: GTTCATGCATGGAATTAAGTGTATGTACTTGGAGCAGATAAATGCCTTGTCTTCTCCTGGAGACAAATGATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540447.5
CDS CAA 72 bp ACAGATTTCACTGCTTTCAAGTACACCAGAGTGAACTaGAAGAAACTGTTGACCGATTCTTATTTTTCCACC +
Preference number: 6 (lower is better)
Translates to: TDFTAFKYTRVN*KKLLTDSYFST
Trigger: GGTGGAAAAATAAGAATCGGTCAACAGTTTCTTCAAGTTCACTCTGGTGTACTTGAAAGCAGTGAAATCTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000542002.5
CDS CCA 72 bp CAGGCTTATATTATAAAATGCTTCAAAGGGATCTTATaGAAGGAGTCTAGCCTAATTCAGTCTTCCAAAGGA +
Preference number: 6 (lower is better)
Translates to: QAYIIKCFKGIL*KESSLIQSSKG
Trigger: TCCTTTGGAAGACTGAATTAGGCTAGACTCCTTCCATAAGATCCCTTTGAAGCATTTTATAATATAAGCCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540447.5
CDS CCA 72 bp ACCGATTCTTATTTTTCCACCATTCTCCCACTAAGTTaGATCTCCAACACAACAACAAGAAAGCACTATAAA +
Preference number: 6 (lower is better)
Translates to: TDSYFSTILPLS*ISNTTTRKHYK
Trigger: TTTATAGTGCTTTCTTGTTGTTGTGTTGGAGATCCAACTTAGTGGGAGAATGGTGGAAAAATAAGAATCGGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000542002.5
CDS CAA 72 bp TCACAAGTTATTTCTCACTCTTTCACCAACCAAATTTaGATTTTCTTAGAGGTCAACAGTGTCGGCACCAAA +
Preference number: 6 (lower is better)
Translates to: SQVISHSFTNQI*IFLEVNSVGTK
Trigger: TTTGGTGCCGACACTGTTGACCTCTAAGAAAATCAAAATTTGGTTGGTGAAAGAGTGAGAAATAACTTGTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540447.5
CDS CAA 90 bp TTAACCAAGGCAAATTCGTTAATAGTTCTGTGGCCTGTACTTTTATaGCCTGTTCACAAGTTATTTCTCACTCTTTCACCAACCAAATTT +
Preference number: 6 (lower is better)
Translates to: LTKANSLIVLWPVLL*PVHKLFLTLSPTKF
Trigger: AAATTTGGTTGGTGAAAGAGTGAGAAATAACTTGTGAACAGGCAATAAAAGTACAGGCCACAGAACTATTAACGAATTTGCCTTGGTTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540447.5