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Pregenerated sensors for XRCC6 (Homo sapiens)

Ensembl gene IDs: ENSG00000196419

Ensembl transcript IDs: ENST00000359308.8, ENST00000405878.5, ENST00000428575.6

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CAAGCGCAGGCGGGCCTCAAACGCAGGCGGGCCTCAAACGCGAGGTaGCGCCTCCTTCCCGAGGAAGGAGCGTGGTCTCGAGTCTGTCGC +
Preference number: 5 (lower is better)
Translates to: QAQAGLKRRRASNAR*RLLPEEGAWSRVCR
Trigger: GCGACAGACTCGAGACCACGCTCCTTCCTCGGGAAGGAGGCGGCACCTCGCGTTTGAGGCCCGCCTGCGTTTGAGGCCCGCCTGCGCTTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000359308.8
ENST00000405878.5
CDS CCA 90 bp CGGATTCGCACACTTAAGGCTAACGCTAACCCTCTAGCAAGGCTATaGGGGCGCGCGAGACCGACCGAGCGAAGCGGGACGAGGCCAGGC +
Preference number: 5 (lower is better)
Translates to: RIRTLKANANPLARL*GRARPTERSGTRPG
Trigger: GCCTGGCCTCGTCCCGCTTCGCTCGGTCGGTCTCGCGCGCCCCCATAGCCTTGCTAGAGGGTTAGCGTTAGCCTTAAGTGTGCGAATCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000359308.8
CDS GCA 90 bp GCAGTCGGACTGCATGTAAATGCGCATGGGGGCCATCCCAGTAGCTaGCTCATCTCAGCTATCCCTCACGTTTCAGGGCCGGCGGCGGCC +
Preference number: 5 (lower is better)
Translates to: AVGLHVNAHGGHPSS*LISAIPHVSGPAAA
Trigger: GGCCGCCGCCGGCCCTGAAACGTGAGGGATAGCTGAGATGAGGCAGCTACTGGGATGGCCCCCATGCGCATTTACATGCAGTCCGACTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000359308.8
CDS GCA 90 bp CCCTGTACTCGGTCCCAATCAACGCCCTCTACGTCATCACGCATGTaGGCACTATATCGCGTCAGGCTGGCACGCACACTCCCCAACCAG +
Preference number: 5 (lower is better)
Translates to: PCTRSQSTPSTSSRM*ALYRVRLARTLPNQ
Trigger: CTGGTTGGGGAGTGTGCGTGCCAGCCTGACGCGATATAGTGCGCACATGCGTGATGACGTAGAGGGCGTTGATTGGGACCGAGTACAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000428575.6
CDS TCA 90 bp TCAATACCGCCCAAAAACCTCCCCAAATTCCTCAATCACGCCCAATaGGATCTCAAACGCAGACAGGCCTCAAGCGCAGGCGGGCCGCAA +
Preference number: 5 (lower is better)
Translates to: SIPPKNLPKFLNHAQ*DLKRRQASSAGGPQ
Trigger: TTGCGGCCCGCCTGCGCTTGAGGCCTGTCTGCGTTTGAGATCTCATTGGGCGTGATTGAGGAATTTGGGGAGGTTTTTGGGCGGTATTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000359308.8
CDS GCA 90 bp CTAAAAGCTTGGTTAGTAGTGAGGAATGTGGACGGTAAATCCTGCTaGCTCGAAAGCTCGGCAGTCGGACTGCATGTAAATGCGCATGGG +
Preference number: 5 (lower is better)
Translates to: LKAWLVVRNVDGKSC*LESSAVGLHVNAHG
Trigger: CCCATGCGCATTTACATGCAGTCCGACTGCCGAGCTTTCGAGGCAGCAGGATTTACCGTCCACATTCCTCACTACTAACCAAGCTTTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000359308.8
CDS GCA 90 bp GTTCTAAAAGCTTGGTTAGTAGTGAGGAATGTGGACGGTAAATCCTaGTGCCTCGAAAGCTCGGCAGTCGGACTGCATGTAAATGCGCAT +
Preference number: 5 (lower is better)
Translates to: VLKAWLVVRNVDGKS*CLESSAVGLHVNAH
Trigger: ATGCGCATTTACATGCAGTCCGACTGCCGAGCTTTCGAGGCAGCAGGATTTACCGTCCACATTCCTCACTACTAACCAAGCTTTTAGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000359308.8
CDS CCA 72 bp AACGCGAGGTGCCGCCTCCTTCCCGAGGAAGGAGCGTaGTCTCGAGTCTGTCGCTGCTCCTCGGATTCGCAC +
Preference number: 6 (lower is better)
Translates to: NARCRLLPEEGA*SRVCRCSSDSH
Trigger: GTGCGAATCCGAGGAGCAGCGACAGACTCGAGACCACGCTCCTTCCTCGGGAAGGAGGCGGCACCTCGCGTT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000359308.8
ENST00000405878.5
CDS CCA 72 bp ACACTTAAGGCTAACGCTAACCCTCTAGCAAGGCTATaGGGGCGCGCGAGACCGACCGAGCGAAGCGGGACG +
Preference number: 6 (lower is better)
Translates to: TLKANANPLARL*GRARPTERSGT
Trigger: CGTCCCGCTTCGCTCGGTCGGTCTCGCGCGCCCCCATAGCCTTGCTAGAGGGTTAGCGTTAGCCTTAAGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000359308.8
CDS GCA 72 bp CGGTCCCAATCAACGCCCTCTACGTCATCACGCATGTaGGCACTATATCGCGTCAGGCTGGCACGCACACTC +
Preference number: 6 (lower is better)
Translates to: RSQSTPSTSSRM*ALYRVRLARTL
Trigger: GAGTGTGCGTGCCAGCCTGACGCGATATAGTGCGCACATGCGTGATGACGTAGAGGGCGTTGATTGGGACCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000428575.6
CDS GCA 72 bp CTGCATGTAAATGCGCATGGGGGCCATCCCAGTAGCTaGCTCATCTCAGCTATCCCTCACGTTTCAGGGCCG +
Preference number: 6 (lower is better)
Translates to: LHVNAHGGHPSS*LISAIPHVSGP
Trigger: CGGCCCTGAAACGTGAGGGATAGCTGAGATGAGGCAGCTACTGGGATGGCCCCCATGCGCATTTACATGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000359308.8
CDS CCA 72 bp CGTCATCACGCATGTGCGCACTATATCGCGTCAGGCTaGCACGCACACTCCCCAACCAGCTTCTACCTATGT +
Preference number: 6 (lower is better)
Translates to: RHHACAHYIASG*HAHSPTSFYLC
Trigger: ACATAGGTAGAAGCTGGTTGGGGAGTGTGCGTGCCAGCCTGACGCGATATAGTGCGCACATGCGTGATGACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000428575.6
CDS TCA 72 bp CCCAAAAACCTCCCCAAATTCCTCAATCACGCCCAATaGGATCTCAAACGCAGACAGGCCTCAAGCGCAGGC +
Preference number: 6 (lower is better)
Translates to: PKNLPKFLNHAQ*DLKRRQASSAG
Trigger: GCCTGCGCTTGAGGCCTGTCTGCGTTTGAGATCTCATTGGGCGTGATTGAGGAATTTGGGGAGGTTTTTGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000359308.8
CDS GCA 72 bp TGGTTAGTAGTGAGGAATGTGGACGGTAAATCCTGCTaGCTCGAAAGCTCGGCAGTCGGACTGCATGTAAAT +
Preference number: 6 (lower is better)
Translates to: WLVVRNVDGKSC*LESSAVGLHVN
Trigger: ATTTACATGCAGTCCGACTGCCGAGCTTTCGAGGCAGCAGGATTTACCGTCCACATTCCTCACTACTAACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000359308.8