Pregenerated sensors for XPOT (Homo sapiens)

Ensembl gene IDs: ENSG00000184575

Ensembl transcript IDs: ENST00000332707.10, ENST00000540203.5

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GATAACGCTACAACGATGACTAACGGGCTTCGGAACCACAGGCGATaGCGACCCTCCTCTGCTAGCCTTGCTCCCATCCCTCCCCCGATC	+
Preference number: 5 (lower is better) Translates to: DNATTMTNGLRNHRR*RPSSASLAPIPPPI Trigger: GATCGGGGGAGGGATGGGAGCAAGGCTAGCAGAGGAGGGTCGGCATCGCCTGTGGTTCCGAAGCCCGTTAGTCATCGTTGTAGCGTTATC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000540203.5
CDS TCA 90 bp	GAAGAATCAAGTTTGAGGTCTCCACAGTTGATAACGCTACAACGATaGCTAACGGGCTTCGGAACCACAGGCGATGCCGACCCTCCTCTG	+
Preference number: 5 (lower is better) Translates to: EESSLRSPQLITLQR*LTGFGTTGDADPPL Trigger: CAGAGGAGGGTCGGCATCGCCTGTGGTTCCGAAGCCCGTTAGTCATCGTTGTAGCGTTATCAACTGTGGAGACCTCAAACTTGATTCTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000540203.5
CDS GCA 72 bp	CCGCTGAGTCAGCGCGAAGCGCGCTCCCCGCGTCGGTaGCGCGCGGGCGGGCGCCGGCGCCAGCAGTCTCTT	+
Preference number: 6 (lower is better) Translates to: PLSQREARSPRR*RAGGRRRQQSL Trigger: AAGAGACTGCTGGCGCCGGCGCCCGCCCGCGCGGCACCGACGCGGGGAGCGCGCTTCGCGCTGACTCAGCGG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000332707.10
CDS GCA 72 bp	ACAACGATGACTAACGGGCTTCGGAACCACAGGCGATaGCGACCCTCCTCTGCTAGCCTTGCTCCCATCCCT	+
Preference number: 6 (lower is better) Translates to: TTMTNGLRNHRR*RPSSASLAPIP Trigger: AGGGATGGGAGCAAGGCTAGCAGAGGAGGGTCGGCATCGCCTGTGGTTCCGAAGCCCGTTAGTCATCGTTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000540203.5
CDS TCA 72 bp	AGTTTGAGGTCTCCACAGTTGATAACGCTACAACGATaGCTAACGGGCTTCGGAACCACAGGCGATGCCGAC	+
Preference number: 6 (lower is better) Translates to: SLRSPQLITLQR*LTGFGTTGDAD Trigger: GTCGGCATCGCCTGTGGTTCCGAAGCCCGTTAGTCATCGTTGTAGCGTTATCAACTGTGGAGACCTCAAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000540203.5
CDS GCA 72 bp	TTGAGAAGAAATGGAGCGTCCGTGCTGGCCAATTACTaGACAGAAATAACACTTTTCCTTTTTGTCCAGGGG	+
Preference number: 6 (lower is better) Translates to: LRRNGASVLANY*TEITLFLFVQG Trigger: CCCCTGGACAAAAAGGAAAAGTGTTATTTCTGTGCAGTAATTGGCCAGCACGGACGCTCCATTTCTTCTCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000540203.5

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu