Pregenerated sensors for XCL1 (Homo sapiens)
Ensembl gene IDs: ENSG00000143184Ensembl transcript IDs: ENST00000367818.4
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TCACATGAGGAAATATTGCATGGGTCAGCATTTGGAGCATTAAAAGCTTATTCGAGTGAAGCAAATTTTTaGGTAGTGGACCCTCAGAAT | + |
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Preference number: 2 (lower is better) Translates to: SHEEILHGSAFGALKAYSSEANF*VVDPQN Trigger: ATTCTGAGGGTCCACTACTCAAAAATTTGCTTCACT...CGAATAAGCTTTTAATGCTCCAAATGCTGACCCATGCAATATTTCCTCATGTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000367818.4 |
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| 3UTR-3UTR CCA 90 bp | TCACATGAGGAAATATTGCATGGGTCAGCATTTGGAGCATTAAAAGCTTATTCGGAACCCAGTGAAGACTaGATTATTTTCTCCCTTATT | + |
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Preference number: 2 (lower is better) Translates to: SHEEILHGSAFGALKAYSEPSED*IIFSLI Trigger: AATAAGGGAGAAAATAATCCAGTCTTCACTGGGTTC...CGAATAAGCTTTTAATGCTCCAAATGCTGACCCATGCAATATTTCCTCATGTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000367818.4 |
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| CDS-3UTR CCA 90 bp | TCACATGAGGAAATATTGCATGGGTCAGCATTTGGAGCATTAAAAGCTTATTCGAGTGGACCCTCAGAATaGGAACCCAGTGAAGACTGG | + |
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Preference number: 4 (lower is better) Translates to: SHEEILHGSAFGALKAYSSGPSE*EPSEDW Trigger: CCAGTCTTCACTGGGTTCCCATTCTGAGGGTCCACT...CGAATAAGCTTTTAATGCTCCAAATGCTGACCCATGCAATATTTCCTCATGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367818.4 |
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| CDS-3UTR GCA 90 bp | TTGAGTAGTGGACCCTCAGAATGGGAACCCAGTGAAGACTGGATTATTTTCTCCGGTAATAAAAATTACTaGTCTCAAGGAGCCTTCCGT | + |
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Preference number: 4 (lower is better) Translates to: LSSGPSEWEPSEDWIIFSGNKNY*SQGAFR Trigger: ACGGAAGGCTCCTTGAGAGCAGTAATTTTTATTACC...GGAGAAAATAATCCAGTCTTCACTGGGTTCCCATTCTGAGGGTCCACTACTCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000367818.4 |
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| CDS-3UTR CCA 90 bp | TTGAGTAGTGGACCCTCAGAATGGGAACCCAGTGAAGACTGGATTATTTTCTCCGAACCCAGTGAAGACTaGATTATTTTCTCCCTTATT | + |
|
Preference number: 4 (lower is better) Translates to: LSSGPSEWEPSEDWIIFSEPSED*IIFSLI Trigger: AATAAGGGAGAAAATAATCCAGTCTTCACTGGGTTC...GGAGAAAATAATCCAGTCTTCACTGGGTTCCCATTCTGAGGGTCCACTACTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000367818.4 |
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| CDS-3UTR GCA 90 bp | TCACATGAGGAAATATTGCATGGGTCAGCATTTGGAGCATTAAAAGCTTATTCGCACATGAGGAAATATTaGATGGGTCAGCATTTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: SHEEILHGSAFGALKAYSHMRKY*MGQHLE Trigger: CTCCAAATGCTGACCCATGCAATATTTCCTCATGTG...CGAATAAGCTTTTAATGCTCCAAATGCTGACCCATGCAATATTTCCTCATGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367818.4 |
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| CDS-3UTR TCA 90 bp | GTCAGCATTTGGAGCATTAAAAGCTTATTCGCAGTAAAGCATAACATGCATGATAGTGAAGCAAATTTTTaGGTAGTGGACCCTCAGAAT | + |
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Preference number: 4 (lower is better) Translates to: VSIWSIKSLFAVKHNMHDSEANF*VVDPQN Trigger: ATTCTGAGGGTCCACTACTCAAAAATTTGCTTCACT...ATCATGCATGTTATGCTTTACTGCGAATAAGCTTTTAATGCTCCAAATGCTGAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000367818.4 |
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| CDS-3UTR TCA 90 bp | GTCAGCATTTGGAGCATTAAAAGCTTATTCGCAGTAAAGCATAACATGCATGATCAAATTGTGATCACATaGGGAAATATTGCATGGGTC | + |
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Preference number: 4 (lower is better) Translates to: VSIWSIKSLFAVKHNMHDQIVIT*GNIAWV Trigger: GACCCATGCAATATTTCCTCATGTGATCACAATTTG...ATCATGCATGTTATGCTTTACTGCGAATAAGCTTTTAATGCTCCAAATGCTGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367818.4 |
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| CDS-3UTR CCA 90 bp | GTCAGCATTTGGAGCATTAAAAGCTTATTCGCAGTAAAGCATAACATGCATGATGCATGGGTCAGCATTTaGAGCATTAAAAGCTTATTC | + |
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Preference number: 4 (lower is better) Translates to: VSIWSIKSLFAVKHNMHDAWVSI*SIKSLF Trigger: GAATAAGCTTTTAATGCTCCAAATGCTGACCCATGC...ATCATGCATGTTATGCTTTACTGCGAATAAGCTTTTAATGCTCCAAATGCTGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000367818.4 |
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| CDS-3UTR CAA 90 bp | TTGAGTAGTGGACCCTCAGAATGGGAACCCAGTGAAGACTGGATTATTTTCTCCTCACATGAGGAAATATaGCATGGGTCAGCATTTGGA | + |
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Preference number: 5 (lower is better) Translates to: LSSGPSEWEPSEDWIIFSSHEEI*HGSAFG Trigger: TCCAAATGCTGACCCATGCAATATTTCCTCATGTGA...GGAGAAAATAATCCAGTCTTCACTGGGTTCCCATTCTGAGGGTCCACTACTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367818.4 |
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