Pregenerated sensors for WSPAR (Homo sapiens)
Ensembl gene IDs: ENSG00000249073Ensembl transcript IDs: ENST00000513561.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCTGGAAGAAGTCCTCCTGGCACGATGGCCACAAGCTTGGGTTCCTaGTGGGATGGGGATGTCAGAACAGGAGAGGGGAGCTTAGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: PGRSPPGTMATSLGS*WDGDVRTGEGSLGL Trigger: CAAGCCTAAGCTCCCCTCTCCTGTTCTGACATCCCCATCCCACCAGGAACCCAAGCTTGTGGCCATCGTGCCAGGAGGACTTCTTCCAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000513561.1 |
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| CDS GCA 90 bp | GGGAACACAGTGGCGCACAGGACAGGCAGGCTGCTGCCGTTAGGATaGGCACAGTCTAGAGCAGGAGGAGATTCTTATAGAAAAGGTTCT | + |
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Preference number: 5 (lower is better) Translates to: GNTVAHRTGRLLPLG*AQSRAGGDSYRKGS Trigger: AGAACCTTTTCTATAAGAATCTCCTCCTGCTCTAGACTGTGCGCATCCTAACGGCAGCAGCCTGCCTGTCCTGTGCGCCACTGTGTTCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000513561.1 |
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| CDS CCA 90 bp | CCTAGAGGTCACTCAGGCTATACTAAAACCTGGAAGAAGTCCTCCTaGCACGATGGCCACAAGCTTGGGTTCCTGGTGGGATGGGGATGT | + |
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Preference number: 5 (lower is better) Translates to: PRGHSGYTKTWKKSS*HDGHKLGFLVGWGC Trigger: ACATCCCCATCCCACCAGGAACCCAAGCTTGTGGCCATCGTGCCAGGAGGACTTCTTCCAGGTTTTAGTATAGCCTGAGTGACCTCTAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000513561.1 |
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| CDS CCA 90 bp | TCAGGTCCAAGGACTCCTAGAGGTCACTCAGGCTATACTAAAACCTaGAAGAAGTCCTCCTGGCACGATGGCCACAAGCTTGGGTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: SGPRTPRGHSGYTKT*KKSSWHDGHKLGFL Trigger: CAGGAACCCAAGCTTGTGGCCATCGTGCCAGGAGGACTTCTTCCAGGTTTTAGTATAGCCTGAGTGACCTCTAGGAGTCCTTGGACCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000513561.1 |
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| CDS GCA 90 bp | TATAGAAAAGGTTCTTCAGACTGGTGTCCATCAGGGACCAAGCTTTaGATTTGGTTGTTGCCCATGACCATCGGAGGAGCCCAGCAGTCA | + |
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Preference number: 5 (lower is better) Translates to: YRKGSSDWCPSGTKL*IWLLPMTIGGAQQS Trigger: TGACTGCTGGGCTCCTCCGATGGTCATGGGCAACAACCAAATGCAAAGCTTGGTCCCTGATGGACACCAGTCTGAAGAACCTTTTCTATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000513561.1 |
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| CDS CAA 72 bp | CATGTAGGGGGTACCTTCCTCCCCTGGGCAGCCTCATaGTGCAGGCAGACGCTCACTGTCCCACCAGCTGGC | + |
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Preference number: 6 (lower is better) Translates to: HVGGTFLPWAAS*CRQTLTVPPAG Trigger: GCCAGCTGGTGGGACAGTGAGCGTCTGCCTGCACAATGAGGCTGCCCAGGGGAGGAAGGTACCCCCTACATG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000513561.1 |
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| CDS CCA 72 bp | CCTCCTGGCACGATGGCCACAAGCTTGGGTTCCTGGTaGGATGGGGATGTCAGAACAGGAGAGGGGAGCTTA | + |
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Preference number: 6 (lower is better) Translates to: PPGTMATSLGSW*DGDVRTGEGSL Trigger: TAAGCTCCCCTCTCCTGTTCTGACATCCCCATCCCACCAGGAACCCAAGCTTGTGGCCATCGTGCCAGGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000513561.1 |
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| CDS CCA 72 bp | CTGGAAGAAGTCCTCCTGGCACGATGGCCACAAGCTTaGGTTCCTGGTGGGATGGGGATGTCAGAACAGGAG | + |
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Preference number: 6 (lower is better) Translates to: LEEVLLARWPQA*VPGGMGMSEQE Trigger: CTCCTGTTCTGACATCCCCATCCCACCAGGAACCCAAGCTTGTGGCCATCGTGCCAGGAGGACTTCTTCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000513561.1 |
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| CDS CAA 90 bp | GGTTCTTCAGACTGGTGTCCATCAGGGACCAAGCTTTGCATTTGGTaGTTGCCCATGACCATCGGAGGAGCCCAGCAGTCAGGGTCAGTG | + |
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Preference number: 6 (lower is better) Translates to: GSSDWCPSGTKLCIW*LPMTIGGAQQSGSV Trigger: CACTGACCCTGACTGCTGGGCTCCTCCGATGGTCATGGGCAACAACCAAATGCAAAGCTTGGTCCCTGATGGACACCAGTCTGAAGAACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000513561.1 |
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| CDS CAA 72 bp | GACTGGTGTCCATCAGGGACCAAGCTTTGCATTTGGTaGTTGCCCATGACCATCGGAGGAGCCCAGCAGTCA | + |
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Preference number: 6 (lower is better) Translates to: DWCPSGTKLCIW*LPMTIGGAQQS Trigger: TGACTGCTGGGCTCCTCCGATGGTCATGGGCAACAACCAAATGCAAAGCTTGGTCCCTGATGGACACCAGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000513561.1 |
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| CDS CAA 90 bp | TCTTCAGACTGGTGTCCATCAGGGACCAAGCTTTGCATTTGGTTGTaGCCCATGACCATCGGAGGAGCCCAGCAGTCAGGGTCAGTGACT | + |
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Preference number: 6 (lower is better) Translates to: SSDWCPSGTKLCIWL*PMTIGGAQQSGSVT Trigger: AGTCACTGACCCTGACTGCTGGGCTCCTCCGATGGTCATGGGCAACAACCAAATGCAAAGCTTGGTCCCTGATGGACACCAGTCTGAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000513561.1 |
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| CDS GCA 72 bp | GGTTCTTCAGACTGGTGTCCATCAGGGACCAAGCTTTaGATTTGGTTGTTGCCCATGACCATCGGAGGAGCC | + |
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Preference number: 6 (lower is better) Translates to: GSSDWCPSGTKL*IWLLPMTIGGA Trigger: GGCTCCTCCGATGGTCATGGGCAACAACCAAATGCAAAGCTTGGTCCCTGATGGACACCAGTCTGAAGAACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000513561.1 |
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| CDS CCA 72 bp | CACTCAGGCTATACTAAAACCTGGAAGAAGTCCTCCTaGCACGATGGCCACAAGCTTGGGTTCCTGGTGGGA | + |
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Preference number: 6 (lower is better) Translates to: HSGYTKTWKKSS*HDGHKLGFLVG Trigger: TCCCACCAGGAACCCAAGCTTGTGGCCATCGTGCCAGGAGGACTTCTTCCAGGTTTTAGTATAGCCTGAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000513561.1 |
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| CDS CAA 72 bp | TTCAGACTGGTGTCCATCAGGGACCAAGCTTTGCATTaGGTTGTTGCCCATGACCATCGGAGGAGCCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: FRLVSIRDQALH*VVAHDHRRSPA Trigger: TGCTGGGCTCCTCCGATGGTCATGGGCAACAACCAAATGCAAAGCTTGGTCCCTGATGGACACCAGTCTGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000513561.1 |
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| CDS CAA 90 bp | AAAAGGTTCTTCAGACTGGTGTCCATCAGGGACCAAGCTTTGCATTaGGTTGTTGCCCATGACCATCGGAGGAGCCCAGCAGTCAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: KRFFRLVSIRDQALH*VVAHDHRRSPAVRV Trigger: GACCCTGACTGCTGGGCTCCTCCGATGGTCATGGGCAACAACCAAATGCAAAGCTTGGTCCCTGATGGACACCAGTCTGAAGAACCTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000513561.1 |
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| CDS CAA 72 bp | AGGTTCTTCAGACTGGTGTCCATCAGGGACCAAGCTTaGCATTTGGTTGTTGCCCATGACCATCGGAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: RFFRLVSIRDQA*HLVVAHDHRRS Trigger: GCTCCTCCGATGGTCATGGGCAACAACCAAATGCAAAGCTTGGTCCCTGATGGACACCAGTCTGAAGAACCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000513561.1 |
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