Pregenerated sensors for WASHC2A (Homo sapiens)
Ensembl gene IDs: ENSG00000099290Ensembl transcript IDs: ENST00000434114.6
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AGAAAAAGTCGTCATCATCATCACCATCATCATCATCAAAGAGGCCAGTGGGAGCTCATTTGTGTGGTGTaGCGGTTTTGTTCATTGTCA | + |
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Preference number: 2 (lower is better) Translates to: RKSRHHHHHHHHQRGQWELICVV*RFCSLS Trigger: TGACAATGAACAAAACCGGCACACCACACAAATGAG...CTCCCACTGGCCTCTTTGATGATGATGATGGTGATGATGATGACGACTTTTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000434114.6 |
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| 3UTR-3UTR CAA 90 bp | AGAAAAAGTCGTCATCATCATCACCATCATCATCATCAAAGAGGCCAGTGGGAGCTCCTGAGGGTAAGGTaGTCGGCTCCTCGTCCACTC | + |
|
Preference number: 3 (lower is better) Translates to: RKSRHHHHHHHHQRGQWELLRVR*SAPRPL Trigger: GAGTGGACGAGGAGCCGACAACCTTACCCTCAGGAG...CTCCCACTGGCCTCTTTGATGATGATGATGGTGATGATGATGACGACTTTTTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000434114.6 |
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| 3UTR-3UTR CAA 90 bp | AGAAAAAGTCGTCATCATCATCACCATCATCATCATCAAAGAGGCCAGTGGGAGTGTGGTGTGCCGGTTTaGTTCATTGTCACTATGATG | + |
|
Preference number: 3 (lower is better) Translates to: RKSRHHHHHHHHQRGQWECGVPV*FIVTMM Trigger: CATCATAGTGACAATGAACAAAACCGGCACACCACA...CTCCCACTGGCCTCTTTGATGATGATGATGGTGATGATGATGACGACTTTTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000434114.6 |
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| CDS-3UTR CCA 90 bp | AGAAAAAGTCGTCATCATCATCACCATCATCATCATCAAAGAGGCCAGTGGGAGGCAGGAATATTCCACTaGTCCTCCTCATCACTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: RKSRHHHHHHHHQRGQWEAGIFH*SSSSLL Trigger: CAGCAGTGATGAGGAGGACCAGTGGAATATTCCTGC...CTCCCACTGGCCTCTTTGATGATGATGATGGTGATGATGATGACGACTTTTTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000434114.6 |
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| CDS-3UTR CCA 90 bp | AGAAAAAGTCGTCATCATCATCACCATCATCATCATCAAAGAGGCCAGTGGGAGCTCTGGGTCTTCTTTTaGCTGTCCTTGGCAATGGCA | + |
|
Preference number: 4 (lower is better) Translates to: RKSRHHHHHHHHQRGQWELWVFF*LSLAMA Trigger: TGCCATTGCCAAGGACAGCCAAAAGAAGACCCAGAG...CTCCCACTGGCCTCTTTGATGATGATGATGGTGATGATGATGACGACTTTTTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000434114.6 |
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| CDS-3UTR GCA 90 bp | AGAAAAAGTCGTCATCATCATCACCATCATCATCATCAAAGAGGCCAGTGGGAGCAGTTTGCCAAACTTTaGCTTGGGTTTTGTTCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: RKSRHHHHHHHHQRGQWEQFAKL*LGFCSL Trigger: GAGAGAACAAAACCCAAGGCAAAGTTTGGCAAACTG...CTCCCACTGGCCTCTTTGATGATGATGATGGTGATGATGATGACGACTTTTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000434114.6 |
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| CDS-3UTR CAA 90 bp | AGAAAAAGTCGTCATCATCATCACCATCATCATCATCAAAGAGGCCAGTGGGAGTCTCTGGGTCTTCTTTaGGCTGTCCTTGGCAATGGC | + |
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Preference number: 5 (lower is better) Translates to: RKSRHHHHHHHHQRGQWESLGLL*AVLGNG Trigger: GCCATTGCCAAGGACAGCCAAAAGAAGACCCAGAGA...CTCCCACTGGCCTCTTTGATGATGATGATGGTGATGATGATGACGACTTTTTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000434114.6 |
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| CDS-3UTR CAA 90 bp | AGAAAAAGTCGTCATCATCATCACCATCATCATCATCAAAGAGGCCAGTGGGAGATCTTGACACGGCTCTaGTTTGCACTGTGTAAGGTG | + |
|
Preference number: 5 (lower is better) Translates to: RKSRHHHHHHHHQRGQWEILTRL*FALCKV Trigger: CACCTTACACAGTGCAAACAAGAGCCGTGTCAAGAT...CTCCCACTGGCCTCTTTGATGATGATGATGGTGATGATGATGACGACTTTTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000434114.6 |
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| CDS-3UTR CAA 90 bp | AGAAAAAGTCGTCATCATCATCACCATCATCATCATCAAAGAGGCCAGTGGGAGGCAGTGGATTGGACTTaGCCTGTTTTAGAAGGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: RKSRHHHHHHHHQRGQWEAVDWT*PVLEGL Trigger: CAAACCTTCTAAAACAGGCAAAGTCCAATCCACTGC...CTCCCACTGGCCTCTTTGATGATGATGATGGTGATGATGATGACGACTTTTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000434114.6 |
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| CDS-3UTR CAA 90 bp | AGAAAAAGTCGTCATCATCATCACCATCATCATCATCAAAGAGGCCAGTGGGAGTACTCTCTTTTTCTCTaGTACCAAAGGCTGGGACTT | + |
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Preference number: 5 (lower is better) Translates to: RKSRHHHHHHHHQRGQWEYSLFL*YQRLGL Trigger: AAGTCCCAGCCTTTGGTACAAGAGAAAAAGAGAGTA...CTCCCACTGGCCTCTTTGATGATGATGATGGTGATGATGATGACGACTTTTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000434114.6 |
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| CDS-3UTR CAA 90 bp | AGAAAAAGTCGTCATCATCATCACCATCATCATCATCAAAGAGGCCAGTGGGAGACAGTTTGCCAAACTTaGCCTTGGGTTTTGTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: RKSRHHHHHHHHQRGQWETVCQT*PWVLFS Trigger: AGAGAACAAAACCCAAGGCAAAGTTTGGCAAACTGT...CTCCCACTGGCCTCTTTGATGATGATGATGGTGATGATGATGACGACTTTTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000434114.6 |
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