Pregenerated sensors for VTCN1 (Homo sapiens)
Ensembl gene IDs: ENSG00000134258Ensembl transcript IDs: ENST00000328189.7, ENST00000359008.8, ENST00000369458.8, ENST00000430871.3, ENST00000463461.5, ENST00000539893.5
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GCCCTTTTCTACTCAAAACCAGGGTTTCTTAGCCCTGACACAGTTGACACTTCGTACATGGTAGGAGGTTaGGCAGCATCCCTGGCCTCT | + |
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Preference number: 2 (lower is better) Translates to: ALFYSKPGFLSPDTVDTSYMVGG*AASLAS Trigger: AGAGGCCAGGGATGCTGCTCAACCTCCTACCATGTA...CGAAGTGTCAACTGTGTCAGGGCTAAGAAACCCTGGTTTTGAGTAGAAAAGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| 3UTR-3UTR CCA 90 bp | CATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATCCACTAGTTGGTAGTAGCTTGGCATTTGTCAGTTaGGAAGAGAAGCCAAGGCAC | + |
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Preference number: 2 (lower is better) Translates to: HGRRLSSIPGLYPLVGSSLAFVS*EEKPRH Trigger: GTGCCTTGGCTTCTCTTCCCAACTGACAAATGCCAA...GCTACTACCAACTAGTGGATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| 3UTR-3UTR CCA 90 bp | CATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATCCACTAGTTGGTAGTAGCAAGATGTGGATATGTTaGGATAGACTTTCCAGGGGC | + |
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Preference number: 2 (lower is better) Translates to: HGRRLSSIPGLYPLVGSSKMWIC*DRLSRG Trigger: GCCCCTGGAAAGTCTATCCCAACATATCCACATCTT...GCTACTACCAACTAGTGGATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| 3UTR-3UTR CCA 90 bp | GCCCTTTTCTACTCAAAACCAGGGTTTCTTAGCCCTGACACAGTTGACACTTCGTTGGCATTTGTCAGTTaGGAAGAGAAGCCAAGGCAC | + |
|
Preference number: 2 (lower is better) Translates to: ALFYSKPGFLSPDTVDTSLAFVS*EEKPRH Trigger: GTGCCTTGGCTTCTCTTCCCAACTGACAAATGCCAA...CGAAGTGTCAACTGTGTCAGGGCTAAGAAACCCTGGTTTTGAGTAGAAAAGGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| 3UTR-3UTR TCA 90 bp | GCCCTTTTCTACTCAAAACCAGGGTTTCTTAGCCCTGACACAGTTGACACTTCGCCTCCACTCCCTCATTaGGGTAACCAAAATTGTCTT | + |
|
Preference number: 2 (lower is better) Translates to: ALFYSKPGFLSPDTVDTSPPLPH*GNQNCL Trigger: AAGACAATTTTGGTTACCTCAATGAGGGAGTGGAGG...CGAAGTGTCAACTGTGTCAGGGCTAAGAAACCCTGGTTTTGAGTAGAAAAGGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| 3UTR-3UTR CCA 90 bp | GCCCTTTTCTACTCAAAACCAGGGTTTCTTAGCCCTGACACAGTTGACACTTCGAAGATGTGGATATGTTaGGATAGACTTTCCAGGGGC | + |
|
Preference number: 2 (lower is better) Translates to: ALFYSKPGFLSPDTVDTSKMWIC*DRLSRG Trigger: GCCCCTGGAAAGTCTATCCCAACATATCCACATCTT...CGAAGTGTCAACTGTGTCAGGGCTAAGAAACCCTGGTTTTGAGTAGAAAAGGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| 3UTR-3UTR CCA 90 bp | GCGAAGTGGCAGTCAATTAGCAGCGTCTTAGGGTACATACTACAGCTTAATTTGAAGATGTGGATATGTTaGGATAGACTTTCCAGGGGC | + |
|
Preference number: 2 (lower is better) Translates to: AKWQSISSVLGYILQLNLKMWIC*DRLSRG Trigger: GCCCCTGGAAAGTCTATCCCAACATATCCACATCTT...CAAATTAAGCTGTAGTATGTACCCTAAGACGCTGCTAATTGACTGCCACTTCGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| 3UTR-3UTR CAA 90 bp | ATGGGGAGACGTCCTGTACATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATTTTGGCATTTGTCAGTaGGGAAGAGAAGCCAAGGCA | + |
|
Preference number: 3 (lower is better) Translates to: MGRRPVHGRRLSSIPGLYFGICQ*GREAKA Trigger: TGCCTTGGCTTCTCTTCCCAACTGACAAATGCCAAA...ATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATGTACAGGACGTCTCCCCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| 3UTR-3UTR CAA 90 bp | CATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATCCACTAGTTGGTAGTAGCTTTGGCATTTGTCAGTaGGGAAGAGAAGCCAAGGCA | + |
|
Preference number: 3 (lower is better) Translates to: HGRRLSSIPGLYPLVGSSFGICQ*GREAKA Trigger: TGCCTTGGCTTCTCTTCCCAACTGACAAATGCCAAA...GCTACTACCAACTAGTGGATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| 3UTR TCA 72 bp | TTGGTAGTAGCACTGTATCCTCCTCCACTCCCTCATTaGGGTAACCAAAATTGTCTTCAGACATTCCCCCGG | + |
|
Preference number: 3 (lower is better) Translates to: LVVALYPPPLPH*GNQNCLQTFPR Trigger: CCGGGGGAATGTCTGAAGACAATTTTGGTTACCTCAATGAGGGAGTGGAGGAGGATACAGTGCTACTACCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR TCA 90 bp | ATGGGGAGACGTCCTGTACATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATTATCTGGGTACTGGCTaGGTGGAGCTGCCGCTGCCT | + |
|
Preference number: 4 (lower is better) Translates to: MGRRPVHGRRLSSIPGLYYLGTG*VELPLP Trigger: AGGCAGCGGCAGCTCCACTCAGCCAGTACCCAGATA...ATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATGTACAGGACGTCTCCCCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000328189.7 ENST00000369458.8 |
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| CDS-3UTR CCA 90 bp | ATGGGGAGACGTCCTGTACATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATTGGGTACTGGCTGAGTaGAGCTGCCGCTGCCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: MGRRPVHGRRLSSIPGLYWVLAE*SCRCLP Trigger: AGGAAGGCAGCGGCAGCTCCACTCAGCCAGTACCCA...ATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATGTACAGGACGTCTCCCCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000328189.7 ENST00000369458.8 |
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| CDS-3UTR CCA 90 bp | CATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATCCACTAGTTGGTAGTAGCATGCCCAGACCACTGTaGGCTGGGGGAACCATCGGG | + |
|
Preference number: 4 (lower is better) Translates to: HGRRLSSIPGLYPLVGSSMPRPL*AGGTIG Trigger: CCCGATGGTTCCCCCAGCCCACAGTGGTCTGGGCAT...GCTACTACCAACTAGTGGATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR TCA 90 bp | CATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATCCACTAGTTGGTAGTAGCCGCTGCCTTCCTTGGTaGCTCACAACCAGCTCCCGT | + |
|
Preference number: 4 (lower is better) Translates to: HGRRLSSIPGLYPLVGSSRCLPW*LTTSSR Trigger: ACGGGAGCTGGTTGTGAGTCACCAAGGAAGGCAGCG...GCTACTACCAACTAGTGGATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000328189.7 |
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| CDS-3UTR CCA 90 bp | ATGGGGAGACGTCCTGTACATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATGGTTCCCAGCGTATCTaGGTACTGGCTGAGTGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: MGRRPVHGRRLSSIPGLYGSQRI*VLAEWS Trigger: GCTCCACTCAGCCAGTACCCAGATACGCTGGGAACC...ATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATGTACAGGACGTCTCCCCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000328189.7 ENST00000369458.8 |
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| CDS-3UTR CCA 90 bp | CATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATCCACTAGTTGGTAGTAGCCAGGGAAGCCATGGCTaGGGAAGGTTCCCAGCGTAT | + |
|
Preference number: 4 (lower is better) Translates to: HGRRLSSIPGLYPLVGSSQGSHG*GRFPAY Trigger: ATACGCTGGGAACCTTCCCCAGCCATGGCTTCCCTG...GCTACTACCAACTAGTGGATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000328189.7 ENST00000369458.8 |
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| CDS-3UTR CCA 90 bp | ATGGGGAGACGTCCTGTACATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATGAGAAGTTGGCTCCCTaGTCAACTTGGGATGCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: MGRRPVHGRRLSSIPGLYEKLAP*STWDAQ Trigger: CTGGGCATCCCAAGTTGACCAGGGAGCCAACTTCTC...ATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATGTACAGGACGTCTCCCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR TCA 90 bp | CATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATCCACTAGTTGGTAGTAGCTACATGGTAGGAGGTTaGGCAGCATCCCTGGCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: HGRRLSSIPGLYPLVGSSYMVGG*AASLAS Trigger: AGAGGCCAGGGATGCTGCTCAACCTCCTACCATGTA...GCTACTACCAACTAGTGGATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR CCA 90 bp | CATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATCCACTAGTTGGTAGTAGCGAGAAGTTGGCTCCCTaGTCAACTTGGGATGCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: HGRRLSSIPGLYPLVGSSEKLAP*STWDAQ Trigger: CTGGGCATCCCAAGTTGACCAGGGAGCCAACTTCTC...GCTACTACCAACTAGTGGATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR TCA 90 bp | GCCCTTTTCTACTCAAAACCAGGGTTTCTTAGCCCTGACACAGTTGACACTTCGTATCTGGGTACTGGCTaGGTGGAGCTGCCGCTGCCT | + |
|
Preference number: 4 (lower is better) Translates to: ALFYSKPGFLSPDTVDTSYLGTG*VELPLP Trigger: AGGCAGCGGCAGCTCCACTCAGCCAGTACCCAGATA...CGAAGTGTCAACTGTGTCAGGGCTAAGAAACCCTGGTTTTGAGTAGAAAAGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000328189.7 ENST00000369458.8 |
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| CDS-3UTR TCA 90 bp | ATGGGGAGACGTCCTGTACATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATTCACTTCCGGCATGCTaGAGGCTGAAATACCAAAGC | + |
|
Preference number: 4 (lower is better) Translates to: MGRRPVHGRRLSSIPGLYSLPAC*RLKYQS Trigger: GCTTTGGTATTTCAGCCTTCAGCATGCCGGAAGTGA...ATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATGTACAGGACGTCTCCCCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000328189.7 |
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| CDS-3UTR CCA 90 bp | CATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATCCACTAGTTGGTAGTAGCGTAATACAGTCACCGTaGCTCCAAGGTCCAGGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: HGRRLSSIPGLYPLVGSSVIQSP*LQGPGR Trigger: CCTTCCTGGACCTTGGAGCCACGGTGACTGTATTAC...GCTACTACCAACTAGTGGATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| 3UTR CAA 72 bp | GTTGTAATGGGGAGACGTCCTGTACATGGTAGGAGGTaGAGCAGCATCCCTGGCCTCTATCCACTAGTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: VVMGRRPVHGRR*SSIPGLYPLVG Trigger: ACCAACTAGTGGATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATGTACAGGACGTCTCCCCATTACAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR TCA 90 bp | ATGGGGAGACGTCCTGTACATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATCAGCGGCTTCATTCTTaGAGTCAGCAAGACCATGAA | + |
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Preference number: 4 (lower is better) Translates to: MGRRPVHGRRLSSIPGLYQRLHS*SQQDHE Trigger: TTCATGGTCTTGCTGACTTCAAGAATGAAGCCGCTG...ATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATGTACAGGACGTCTCCCCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000359008.8 |
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| CDS-3UTR CCA 90 bp | GCCCTTTTCTACTCAAAACCAGGGTTTCTTAGCCCTGACACAGTTGACACTTCGAGCGTATCTGGGTACTaGCTGAGTGGAGCTGCCGCT | + |
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Preference number: 4 (lower is better) Translates to: ALFYSKPGFLSPDTVDTSSVSGY*LSGAAA Trigger: AGCGGCAGCTCCACTCAGCCAGTACCCAGATACGCT...CGAAGTGTCAACTGTGTCAGGGCTAAGAAACCCTGGTTTTGAGTAGAAAAGGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000328189.7 ENST00000369458.8 |
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| CDS-3UTR CCA 90 bp | GCGAAGTGGCAGTCAATTAGCAGCGTCTTAGGGTACATACTACAGCTTAATTTGATGCCCAGACCACTGTaGGCTGGGGGAACCATCGGG | + |
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Preference number: 4 (lower is better) Translates to: AKWQSISSVLGYILQLNLMPRPL*AGGTIG Trigger: CCCGATGGTTCCCCCAGCCCACAGTGGTCTGGGCAT...CAAATTAAGCTGTAGTATGTACCCTAAGACGCTGCTAATTGACTGCCACTTCGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR TCA 90 bp | ATGGGGAGACGTCCTGTACATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATCCTCCACTCCCTCATTaGGGTAACCAAAATTGTCTT | + |
|
Preference number: 4 (lower is better) Translates to: MGRRPVHGRRLSSIPGLYPPLPH*GNQNCL Trigger: AAGACAATTTTGGTTACCTCAATGAGGGAGTGGAGG...ATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATGTACAGGACGTCTCCCCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR TCA 90 bp | CATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATCCACTAGTTGGTAGTAGCTCACTTCCGGCATGCTaGAGGCTCCAGTTTTATACT | + |
|
Preference number: 4 (lower is better) Translates to: HGRRLSSIPGLYPLVGSSSLPAC*RLQFYT Trigger: AGTATAAAACTGGAGCCTTCAGCATGCCGGAAGTGA...GCTACTACCAACTAGTGGATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR CCA 90 bp | GCGAAGTGGCAGTCAATTAGCAGCGTCTTAGGGTACATACTACAGCTTAATTTGTGGGTACTGGCTGAGTaGAGCTGCCGCTGCCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: AKWQSISSVLGYILQLNLWVLAE*SCRCLP Trigger: AGGAAGGCAGCGGCAGCTCCACTCAGCCAGTACCCA...CAAATTAAGCTGTAGTATGTACCCTAAGACGCTGCTAATTGACTGCCACTTCGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000328189.7 ENST00000369458.8 |
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| CDS-3UTR CCA 90 bp | GCCCTTTTCTACTCAAAACCAGGGTTTCTTAGCCCTGACACAGTTGACACTTCGGAGAAGTTGGCTCCCTaGTCAACTTGGGATGCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: ALFYSKPGFLSPDTVDTSEKLAP*STWDAQ Trigger: CTGGGCATCCCAAGTTGACCAGGGAGCCAACTTCTC...CGAAGTGTCAACTGTGTCAGGGCTAAGAAACCCTGGTTTTGAGTAGAAAAGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR CCA 90 bp | CATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATCCACTAGTTGGTAGTAGCGCTCAAAGCTGGTATTaGAGACTTCCGAGAAGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: HGRRLSSIPGLYPLVGSSAQSWY*RLPRSW Trigger: CCAACTTCTCGGAAGTCTCCAATACCAGCTTTGAGC...GCTACTACCAACTAGTGGATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR TCA 90 bp | CATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATCCACTAGTTGGTAGTAGCGATGGAGTGTCTCCCTaGAATACCAAAGCCAATGAT | + |
|
Preference number: 4 (lower is better) Translates to: HGRRLSSIPGLYPLVGSSDGVSP*NTKAND Trigger: ATCATTGGCTTTGGTATTTCAGGGAGACACTCCATC...GCTACTACCAACTAGTGGATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR CCA 90 bp | GCGAAGTGGCAGTCAATTAGCAGCGTCTTAGGGTACATACTACAGCTTAATTTGAGCGTATCTGGGTACTaGCTGAGTGGAGCTGCCGCT | + |
|
Preference number: 4 (lower is better) Translates to: AKWQSISSVLGYILQLNLSVSGY*LSGAAA Trigger: AGCGGCAGCTCCACTCAGCCAGTACCCAGATACGCT...CAAATTAAGCTGTAGTATGTACCCTAAGACGCTGCTAATTGACTGCCACTTCGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000328189.7 ENST00000369458.8 |
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| CDS-3UTR CCA 90 bp | GCGAAGTGGCAGTCAATTAGCAGCGTCTTAGGGTACATACTACAGCTTAATTTGCAGGGAAGCCATGGCTaGGGAAGGTTCCCAGCGTAT | + |
|
Preference number: 4 (lower is better) Translates to: AKWQSISSVLGYILQLNLQGSHG*GRFPAY Trigger: ATACGCTGGGAACCTTCCCCAGCCATGGCTTCCCTG...CAAATTAAGCTGTAGTATGTACCCTAAGACGCTGCTAATTGACTGCCACTTCGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000328189.7 ENST00000369458.8 |
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| CDS-3UTR CCA 90 bp | GCCCTTTTCTACTCAAAACCAGGGTTTCTTAGCCCTGACACAGTTGACACTTCGAGCAGACAGATTTGTTaGCTCCCCTCTTTCCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: ALFYSKPGFLSPDTVDTSSRQIC*LPSFQA Trigger: GGCCTGGAAAGAGGGGAGCCAACAAATCTGTCTGCT...CGAAGTGTCAACTGTGTCAGGGCTAAGAAACCCTGGTTTTGAGTAGAAAAGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR CCA 90 bp | GCCCTTTTCTACTCAAAACCAGGGTTTCTTAGCCCTGACACAGTTGACACTTCGGTAATACAGTCACCGTaGCTCCAAGGTCCAGGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: ALFYSKPGFLSPDTVDTSVIQSP*LQGPGR Trigger: CCTTCCTGGACCTTGGAGCCACGGTGACTGTATTAC...CGAAGTGTCAACTGTGTCAGGGCTAAGAAACCCTGGTTTTGAGTAGAAAAGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR TCA 90 bp | GCCCTTTTCTACTCAAAACCAGGGTTTCTTAGCCCTGACACAGTTGACACTTCGTCACTTCCGGCATGCTaGAGGCTCCAGTTTTATACT | + |
|
Preference number: 4 (lower is better) Translates to: ALFYSKPGFLSPDTVDTSSLPAC*RLQFYT Trigger: AGTATAAAACTGGAGCCTTCAGCATGCCGGAAGTGA...CGAAGTGTCAACTGTGTCAGGGCTAAGAAACCCTGGTTTTGAGTAGAAAAGGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR CCA 90 bp | GCCCTTTTCTACTCAAAACCAGGGTTTCTTAGCCCTGACACAGTTGACACTTCGGCTCAAAGCTGGTATTaGAGACTTCCGAGAAGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: ALFYSKPGFLSPDTVDTSAQSWY*RLPRSW Trigger: CCAACTTCTCGGAAGTCTCCAATACCAGCTTTGAGC...CGAAGTGTCAACTGTGTCAGGGCTAAGAAACCCTGGTTTTGAGTAGAAAAGGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR CCA 90 bp | GCGAAGTGGCAGTCAATTAGCAGCGTCTTAGGGTACATACTACAGCTTAATTTGAGCAGACAGATTTGTTaGCTCCCCTCTTTCCAGGCC | + |
|
Preference number: 4 (lower is better) Translates to: AKWQSISSVLGYILQLNLSRQIC*LPSFQA Trigger: GGCCTGGAAAGAGGGGAGCCAACAAATCTGTCTGCT...CAAATTAAGCTGTAGTATGTACCCTAAGACGCTGCTAATTGACTGCCACTTCGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR CCA 90 bp | GCGAAGTGGCAGTCAATTAGCAGCGTCTTAGGGTACATACTACAGCTTAATTTGGTAATACAGTCACCGTaGCTCCAAGGTCCAGGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: AKWQSISSVLGYILQLNLVIQSP*LQGPGR Trigger: CCTTCCTGGACCTTGGAGCCACGGTGACTGTATTAC...CAAATTAAGCTGTAGTATGTACCCTAAGACGCTGCTAATTGACTGCCACTTCGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR TCA 90 bp | GCCCTTTTCTACTCAAAACCAGGGTTTCTTAGCCCTGACACAGTTGACACTTCGGATGGAGTGTCTCCCTaGAATACCAAAGCCAATGAT | + |
|
Preference number: 4 (lower is better) Translates to: ALFYSKPGFLSPDTVDTSDGVSP*NTKAND Trigger: ATCATTGGCTTTGGTATTTCAGGGAGACACTCCATC...CGAAGTGTCAACTGTGTCAGGGCTAAGAAACCCTGGTTTTGAGTAGAAAAGGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR CCA 90 bp | GCCCTTTTCTACTCAAAACCAGGGTTTCTTAGCCCTGACACAGTTGACACTTCGATACAGAGAATCACCTaGAGGTCTTGTTACGCCACA | + |
|
Preference number: 4 (lower is better) Translates to: ALFYSKPGFLSPDTVDTSIQRIT*RSCYAT Trigger: TGTGGCGTAACAAGACCTCCAGGTGATTCTCTGTAT...CGAAGTGTCAACTGTGTCAGGGCTAAGAAACCCTGGTTTTGAGTAGAAAAGGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000539893.5 |
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| CDS-3UTR CCA 90 bp | GCGAAGTGGCAGTCAATTAGCAGCGTCTTAGGGTACATACTACAGCTTAATTTGGCTCAAAGCTGGTATTaGAGACTTCCGAGAAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: AKWQSISSVLGYILQLNLAQSWY*RLPRSW Trigger: CCAACTTCTCGGAAGTCTCCAATACCAGCTTTGAGC...CAAATTAAGCTGTAGTATGTACCCTAAGACGCTGCTAATTGACTGCCACTTCGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR TCA 90 bp | GCGAAGTGGCAGTCAATTAGCAGCGTCTTAGGGTACATACTACAGCTTAATTTGGATGGAGTGTCTCCCTaGAATACCAAAGCCAATGAT | + |
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Preference number: 4 (lower is better) Translates to: AKWQSISSVLGYILQLNLDGVSP*NTKAND Trigger: ATCATTGGCTTTGGTATTTCAGGGAGACACTCCATC...CAAATTAAGCTGTAGTATGTACCCTAAGACGCTGCTAATTGACTGCCACTTCGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR CCA 90 bp | GCCCTTTTCTACTCAAAACCAGGGTTTCTTAGCCCTGACACAGTTGACACTTCGATCAAGACCCATCTGTaGCTCTTTAGCACATTTCTT | + |
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Preference number: 4 (lower is better) Translates to: ALFYSKPGFLSPDTVDTSIKTHL*LFSTFL Trigger: AAGAAATGTGCTAAAGAGCCACAGATGGGTCTTGAT...CGAAGTGTCAACTGTGTCAGGGCTAAGAAACCCTGGTTTTGAGTAGAAAAGGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000539893.5 |
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| CDS-3UTR CAA 90 bp | ATGGGGAGACGTCCTGTACATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATAGCTCAAAGCTGGTATaGGAGACTTCCGAGAAGTTG | + |
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Preference number: 5 (lower is better) Translates to: MGRRPVHGRRLSSIPGLYSSKLV*ETSEKL Trigger: CAACTTCTCGGAAGTCTCCAATACCAGCTTTGAGCT...ATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATGTACAGGACGTCTCCCCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR CAA 90 bp | GCGAAGTGGCAGTCAATTAGCAGCGTCTTAGGGTACATACTACAGCTTAATTTGCTGCCGCTGCCTTCCTaGGTGACTCACAACCAGCTC | + |
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Preference number: 5 (lower is better) Translates to: AKWQSISSVLGYILQLNLLPLPS*VTHNQL Trigger: GAGCTGGTTGTGAGTCACCAAGGAAGGCAGCGGCAG...CAAATTAAGCTGTAGTATGTACCCTAAGACGCTGCTAATTGACTGCCACTTCGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000328189.7 |
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| CDS-3UTR CAA 90 bp | CATGGTAGGAGGTTGAGCAGCATCCCTGGCCTCTATCCACTAGTTGGTAGTAGCAGCTCAAAGCTGGTATaGGAGACTTCCGAGAAGTTG | + |
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Preference number: 5 (lower is better) Translates to: HGRRLSSIPGLYPLVGSSSSKLV*ETSEKL Trigger: CAACTTCTCGGAAGTCTCCAATACCAGCTTTGAGCT...GCTACTACCAACTAGTGGATAGAGGCCAGGGATGCTGCTCAACCTCCTACCATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS-3UTR CAA 90 bp | GCCCTTTTCTACTCAAAACCAGGGTTTCTTAGCCCTGACACAGTTGACACTTCGAGCTCAAAGCTGGTATaGGAGACTTCCGAGAAGTTG | + |
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Preference number: 5 (lower is better) Translates to: ALFYSKPGFLSPDTVDTSSSKLV*ETSEKL Trigger: CAACTTCTCGGAAGTCTCCAATACCAGCTTTGAGCT...CGAAGTGTCAACTGTGTCAGGGCTAAGAAACCCTGGTTTTGAGTAGAAAAGGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000328189.7 ENST00000359008.8 ENST00000369458.8 ENST00000539893.5 |
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| CDS TCA 90 bp | AATAATGATGATGCTAATTATGCGCGAGGTCAGCGGCTTCATTCTTaGAGTCAGCAAGACCATGAACCCACCAGAAGGAATAAATTCCGG | + |
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Preference number: 5 (lower is better) Translates to: NNDDANYARGQRLHS*SQQDHEPTRRNKFR Trigger: CCGGAATTTATTCCTTCTGGTGGGTTCATGGTCTTGCTGACTTCAAGAATGAAGCCGCTGACCTCGCGCATAATTAGCATCATCATTATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000359008.8 |
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| CDS TCA 72 bp | GTACTGGCTGAGTGGAGCTGCCGCTGCCTTCCTTGGTaGCTCACAACCAGCTCCCGTGTATTGGCCTTAAAT | + |
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Preference number: 6 (lower is better) Translates to: VLAEWSCRCLPW*LTTSSRVLALN Trigger: ATTTAAGGCCAATACACGGGAGCTGGTTGTGAGTCACCAAGGAAGGCAGCGGCAGCTCCACTCAGCCAGTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000328189.7 |
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| CDS CAA 90 bp | GTCTCCCTGCAGTTCAGGAAGCAAAGATCAATGCTAAGGGAAGCCTaGGAACTTCTACACAAACCCTTCATTGCTGAAAGCCAGACAGAG | + |
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Preference number: 6 (lower is better) Translates to: VSLQFRKQRSMLREA*ELLHKPFIAESQTE Trigger: CTCTGTCTGGCTTTCAGCAATGAAGGGTTTGTGTAGAAGTTCCAAGGCTTCCCTTAGCATTGATCTTTGCTTCCTGAACTGCAGGGAGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000430871.3 |
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| CDS CAA 90 bp | GTCTCCCTGCAGTTCAGGAAGCAAAGATCAATGCTAAGGGAAGCCTaGGAACTTCTACAACCAAACCCTTCATTGCTGAAAGCCAGACAG | + |
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Preference number: 6 (lower is better) Translates to: VSLQFRKQRSMLREA*ELLQPNPSLLKARQ Trigger: CTGTCTGGCTTTCAGCAATGAAGGGTTTGGTTGTAGAAGTTCCAAGGCTTCCCTTAGCATTGATCTTTGCTTCCTGAACTGCAGGGAGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000463461.5 |
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