RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VSX1 (Homo sapiens)

Ensembl gene IDs: ENSG00000100987

Ensembl transcript IDs: ENST00000376707.4, ENST00000376709.9, ENST00000409285.6, ENST00000409958.6, ENST00000429762.7, ENST00000444511.6, ENST00000557285.1

Found 298 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCACCACGGGGTCTGGGGAGCCTGTGTGTCTCCTGCAAAGTCCAGTaGACGGGAGCCTCCAGGAGCAGAAGTTTGCACTCGTTCTTTAAG +
Preference number: 1 (lower is better)
Translates to: PPRGLGSLCVSCKVQ*TGASRSRSLHSFFK
Trigger: CTTAAAGAACGAGTGCAAACTTCTGCTCCTGGAGGCTCCCGTTCACTGGACTTTGCAGGAGACACACAGGCTCCCCAGACCCCGTGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
3UTR TCA 90 bp GCCCGGGTTGAGATCAGGGGTCAAAGAGGAGACGACCACAGCTGGTaGCTTAGAGGGTCAGTAAGAGGAATCAGGGCAGAAAAGCACAGA +
Preference number: 1 (lower is better)
Translates to: ARVEIRGQRGDDHSW*LRGSVRGIRAEKHR
Trigger: TCTGTGCTTTTCTGCCCTGATTCCTCTTACTGACCCTCTAAGTCACCAGCTGTGGTCGTCTCCTCTTTGACCCCTGATCTCAACCCGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000429762.7
3UTR GCA 90 bp TCTCCTGCAAAGTCCAGTGAACGGGAGCCTCCAGGAGCAGAAGTTTaGACTCGTTCTTTAAGGGTGTTTTCCCGATCCTTGGCTCTGAGT +
Preference number: 1 (lower is better)
Translates to: SPAKSSEREPPGAEV*TRSLRVFSRSLALS
Trigger: ACTCAGAGCCAAGGATCGGGAAAACACCCTTAAAGAACGAGTGCAAACTTCTGCTCCTGGAGGCTCCCGTTCACTGGACTTTGCAGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
3UTR TCA 90 bp AACACACTGAACTTGGGAGACCAATGCTTTCAACTCCTAGGTTGTTaGATTCCTTGCACATGGGGTGCCCTGCAGGGGGCAAGTCTGGTA +
Preference number: 1 (lower is better)
Translates to: NTLNLGDQCFQLLGC*IPCTWGALQGASLV
Trigger: TACCAGACTTGCCCCCTGCAGGGCACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR-3UTR TCA 90 bp CATTTCAAAGCCCGGGTTGAGATCAGGGGTCAAAGAGGAGACGACCACAGCTGGAGCCTGGAGACAGAGTaGGACCCTGCCCTAACACTC +
Preference number: 2 (lower is better)
Translates to: HFKARVEIRGQRGDDHSWSLETE*DPALTL
Trigger: GAGTGTTAGGGCAGGGTCTCACTCTGTCTCCAGGCT...CCAGCTGTGGTCGTCTCCTCTTTGACCCCTGATCTCAACCCGGGCTTTGAAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429762.7
3UTR-3UTR GCA 90 bp AAGGAGGGGAGTTTCTGTAAGAGCAGCTTTCTGCACCTGTCACTAGGACCTAGCTCCTTGCACATGGGGTaGCCTGCAGGGGGCAAGTCT +
Preference number: 2 (lower is better)
Translates to: KEGSFCKSSFLHLSLGPSSLHMG*PAGGKS
Trigger: AGACTTGCCCCCTGCAGGGCACCCCATGTGCAAGGA...GCTAGGTCCTAGTGACAGGTGCAGAAAGCTGCTCTTACAGAAACTCCCCTCCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR CAA 90 bp GAACTTGGGAGACCAATGCTTTCAACTCCTAGGTTGTTGAATTCCTaGCACATGGGGTGCCCTGCAGGGGGCAAGTCTGGTAGCAGTGAT +
Preference number: 2 (lower is better)
Translates to: ELGRPMLSTPRLLNS*HMGCPAGGKSGSSD
Trigger: ATCACTGCTACCAGACTTGCCCCCTGCAGGGCACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR-3UTR TCA 90 bp GGGAGTTTCTGTAAGAGCAGCTTTCTGCACCTGTCACTAGGACCTAGCTGTCATCAGAACAATGCTACCTaGGCACTTCTCCAGAGGGGC +
Preference number: 2 (lower is better)
Translates to: GSFCKSSFLHLSLGPSCHQNNAT*ALLQRG
Trigger: GCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTG...ATGACAGCTAGGTCCTAGTGACAGGTGCAGAAAGCTGCTCTTACAGAAACTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR-3UTR TCA 90 bp CTTTCAACTCCTAGGTTGTTGAATTCCTTGCACATGGGGTGCCCTGCAGGGGGCAGTGATCATCAAGGATaGCACAGGAAAATCGGCATG +
Preference number: 2 (lower is better)
Translates to: LSTPRLLNSLHMGCPAGGSDHQG*HRKIGM
Trigger: CATGCCGATTTTCCTGTGTCATCCTTGATGATCACT...GCCCCCTGCAGGGCACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR-3UTR TCA 90 bp ATTTCAAAGCCCGGGTTGAGATCAGGGGTCAAAGAGGAGACGACCACAGCTGGTCGGAAAAGAACACACTaGACTTGGGAGACCAATGCT +
Preference number: 2 (lower is better)
Translates to: ISKPGLRSGVKEETTTAGRKRTH*TWETNA
Trigger: AGCATTGGTCTCCCAAGTTCAGTGTGTTCTTTTCCG...ACCAGCTGTGGTCGTCTCCTCTTTGACCCCTGATCTCAACCCGGGCTTTGAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000429762.7
3UTR CAA 90 bp AAAGAACACACTGAACTTGGGAGACCAATGCTTTCAACTCCTAGGTaGTTGAATTCCTTGCACATGGGGTGCCCTGCAGGGGGCAAGTCT +
Preference number: 2 (lower is better)
Translates to: KEHTELGRPMLSTPR*LNSLHMGCPAGGKS
Trigger: AGACTTGCCCCCTGCAGGGCACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTTCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR-3UTR TCA 90 bp ATTTCAAAGCCCGGGTTGAGATCAGGGGTCAAAGAGGAGACGACCACAGCTGGTCAAGGCATTTTGGGTTaGGGAAGTCCAGAAAAGTCA +
Preference number: 2 (lower is better)
Translates to: ISKPGLRSGVKEETTTAGQGILG*GSPEKS
Trigger: TGACTTTTCTGGACTTCCTCAACCCAAAATGCCTTG...ACCAGCTGTGGTCGTCTCCTCTTTGACCCCTGATCTCAACCCGGGCTTTGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000429762.7
3UTR-3UTR GCA 90 bp AAGGAGGGGAGTTTCTGTAAGAGCAGCTTTCTGCACCTGTCACTAGGACCTAGCACAGGAAAATCGGCATaGTTCCTGAGGCAGAACAAT +
Preference number: 2 (lower is better)
Translates to: KEGSFCKSSFLHLSLGPSTGKSA*FLRQNN
Trigger: ATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCTGT...GCTAGGTCCTAGTGACAGGTGCAGAAAGCTGCTCTTACAGAAACTCCCCTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR CAA 90 bp TGGGTAATGGACAATTATGTGAACAAACACATTTCAAAGCCCGGGTaGAGATCAGGGGTCAAAGAGGAGACGACCACAGCTGGTGACTTA +
Preference number: 2 (lower is better)
Translates to: WVMDNYVNKHISKPG*RSGVKEETTTAGDL
Trigger: TAAGTCACCAGCTGTGGTCGTCTCCTCTTTGACCCCTGATCTCAACCCGGGCTTTGAAATGTGTTTGTTCACATAATTGTCCATTACCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429762.7
3UTR-3UTR TCA 90 bp CTTGGGAGACCAATGCTTTCAACTCCTAGGTTGTTGAATTCCTTGCACATGGGGAGTGATCATCAAGGATaGCACAGGAAAATCGGCATG +
Preference number: 2 (lower is better)
Translates to: LGRPMLSTPRLLNSLHMGSDHQG*HRKIGM
Trigger: CATGCCGATTTTCCTGTGTCATCCTTGATGATCACT...CCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR-3UTR TCA 90 bp TTTCTGCACCTGTCACTAGGACCTAGCTGTCATGACTGCAGGTTTATTCTCATCCGGAAAAGAACACACTaGACTTGGGAGACCAATGCT +
Preference number: 2 (lower is better)
Translates to: FLHLSLGPSCHDCRFILIRKRTH*TWETNA
Trigger: AGCATTGGTCTCCCAAGTTCAGTGTGTTCTTTTCCG...GATGAGAATAAACCTGCAGTCATGACAGCTAGGTCCTAGTGACAGGTGCAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR-3UTR TCA 90 bp CAGAAAAGTCAGAACAATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATCAATCGGCATGCTTCCTaGGGCAGAACAATGCTACCT +
Preference number: 2 (lower is better)
Translates to: QKSQNNALVWTVPFQQIINRHAS*GRTMLP
Trigger: AGGTAGCATTGTTCTGCCTCAGGAAGCATGCCGATT...GATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATTGTTCTGACTTTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR-3UTR TCA 90 bp ATGAGGACATCAGACCTAACCTATTCATCTATACAGTACATTGAACCACACATCCACATTTTCAGCCTTTaGCAGTGGGACCTGTGGGTC +
Preference number: 2 (lower is better)
Translates to: MRTSDLTYSSIQYIEPHIHIFSL*QWDLWV
Trigger: GACCCACAGGTCCCACTGTCAAAGGCTGAAAATGTG...GATGTGTGGTTCAATGTACTGTATAGATGAATAGGTTAGGTCTGATGTCCTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000376709.9
3UTR-3UTR TCA 90 bp GTAGAAGCAGTTCCGAGTGATAGACAAAGCCTCTTAATAAGGAGGGGAGTTTCTAGTGATCATCAAGGATaGCACAGGAAAATCGGCATG +
Preference number: 2 (lower is better)
Translates to: VEAVPSDRQSLLIRRGVSSDHQG*HRKIGM
Trigger: CATGCCGATTTTCCTGTGTCATCCTTGATGATCACT...AGAAACTCCCCTCCTTATTAAGAGGCTTTGTCTATCACTCGGAACTGCTTCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR-3UTR TCA 90 bp AATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATCTTGAGTAGAAGCAGTCAACTCCTAGGTTGTTaGATTCCTTGCACATGGGGT +
Preference number: 2 (lower is better)
Translates to: NALVWTVPFQQIILSRSSQLLGC*IPCTWG
Trigger: ACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTG...ACTGCTTCTACTCAAGATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR-3UTR TCA 90 bp CCAGAAAAGTCAGAACAATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATCAACTCCTAGGTTGTTaGATTCCTTGCACATGGGGT +
Preference number: 2 (lower is better)
Translates to: PEKSEQCPGMDSSLSTDNQLLGC*IPCTWG
Trigger: ACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTG...ATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATTGTTCTGACTTTTCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR-3UTR GCA 90 bp CCAGAAAAGTCAGAACAATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATACAGGAAAATCGGCATaGTTCCTGAGGCAGAACAAT +
Preference number: 2 (lower is better)
Translates to: PEKSEQCPGMDSSLSTDNTGKSA*FLRQNN
Trigger: ATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCTGT...ATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATTGTTCTGACTTTTCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR-3UTR GCA 90 bp CAGAAAAGTCAGAACAATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATCACAGGAAAATCGGCATaGTTCCTGAGGCAGAACAAT +
Preference number: 2 (lower is better)
Translates to: QKSQNNALVWTVPFQQIITGKSA*FLRQNN
Trigger: ATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCTGT...GATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATTGTTCTGACTTTTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR-3UTR GCA 90 bp ATGAGGACATCAGACCTAACCTATTCATCTATACAGTACATTGAACCACACATCACTTCGGATCCTCCCTaGTCAAGCTACAAAAGAGAA +
Preference number: 2 (lower is better)
Translates to: MRTSDLTYSSIQYIEPHITSDPP*SSYKRE
Trigger: TTCTCTTTTGTAGCTTGAGCAGGGAGGATCCGAAGT...GATGTGTGGTTCAATGTACTGTATAGATGAATAGGTTAGGTCTGATGTCCTCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000376709.9
3UTR-3UTR TCA 90 bp GGCAAAGGAAACGCAGGAAAGGAAAGATTTACAAAATCCAAGTCACTAAAGTGCGAGTATGGGTTTCTTTaGATTCCAATATGCATAGCC +
Preference number: 2 (lower is better)
Translates to: GKGNAGKERFTKSKSLKCEYGFL*IPICIA
Trigger: GGCTATGCATATTGGAATTCAAAGAAACCCATACTC...GCACTTTAGTGACTTGGATTTTGTAAATCTTTCCTTTCCTGCGTTTCCTTTGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000376709.9
3UTR-3UTR CCA 90 bp GGCAAAGGAAACGCAGGAAAGGAAAGATTTACAAAATCCAAGTCACTAAAGTGCGAAACGACTAGAGTATaGGTTTCTTTGAATTCCAAT +
Preference number: 2 (lower is better)
Translates to: GKGNAGKERFTKSKSLKCETTRV*VSLNSN
Trigger: ATTGGAATTCAAAGAAACCCATACTCTAGTCGTTTC...GCACTTTAGTGACTTGGATTTTGTAAATCTTTCCTTTCCTGCGTTTCCTTTGCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000376709.9
3UTR-3UTR TCA 90 bp AAATCATTTTTGAACTTCGGATCCTCCCTGCTCAAGCTACAAAAGAGAATCAAATTTGGAAAATGCCAGTaGGGAATATGCACATTTTCA +
Preference number: 2 (lower is better)
Translates to: KSFLNFGSSLLKLQKRIKFGKCQ*GICTFS
Trigger: TGAAAATGTGCATATTCCTCACTGGCATTTTCCAAA...TTTGATTCTCTTTTGTAGCTTGAGCAGGGAGGATCCGAAGTTCAAAAATGATTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000376709.9
3UTR CCA 72 bp GTTCAGCTGAAGGTCATCAGGCACCACCACGGGGTCTaGGGAGCCTGTGTGTCTCCTGCAAAGTCCAGTGAA +
Preference number: 3 (lower is better)
Translates to: VQLKVIRHHHGV*GACVSPAKSSE
Trigger: TTCACTGGACTTTGCAGGAGACACACAGGCTCCCCAGACCCCGTGGTGGTGCCTGATGACCTTCAGCTGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
3UTR TCA 72 bp AAAATTTCAGGCTGCAAACTCACATGGGTGCCAAGCTaGGCACCCAGGCAGGCACAGGTCAGCCATGCTAGC +
Preference number: 3 (lower is better)
Translates to: KISGCKLTWVPS*APRQAQVSHAS
Trigger: GCTAGCATGGCTGACCTGTGCCTGCCTGGGTGCTCAGCTTGGCACCCATGTGAGTTTGCAGCCTGAAATTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429762.7
3UTR GCA 72 bp AGGCAGGCACAGGTCAGCCATGCTAGCCGAAGGGGATaGCCATGTGTCATTCATGATGGAAGGAGAGGAGAA +
Preference number: 3 (lower is better)
Translates to: RQAQVSHASRRG*PCVIHDGRRGE
Trigger: TTCTCCTCTCCTTCCATCATGAATGACACATGGGCATCCCCTTCGGCTAGCATGGCTGACCTGTGCCTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429762.7
3UTR-3UTR CAA 90 bp AGGTTGTTGAATTCCTTGCACATGGGGTGCCCTGCAGGGGGCAAGTCTGGTAGCTCCAGGAGCAGAAGTTaGCACTCGTTCTTTAAGGGT +
Preference number: 3 (lower is better)
Translates to: RLLNSLHMGCPAGGKSGSSRSRS*HSFFKG
Trigger: ACCCTTAAAGAACGAGTGCAAACTTCTGCTCCTGGA...GCTACCAGACTTGCCCCCTGCAGGGCACCCCATGTGCAAGGAATTCAACAACCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
3UTR TCA 72 bp AACTTGGGAGACCAATGCTTTCAACTCCTAGGTTGTTaGATTCCTTGCACATGGGGTGCCCTGCAGGGGGCA +
Preference number: 3 (lower is better)
Translates to: NLGDQCFQLLGC*IPCTWGALQGA
Trigger: TGCCCCCTGCAGGGCACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR TCA 72 bp GAGATCAGGGGTCAAAGAGGAGACGACCACAGCTGGTaGCTTAGAGGGTCAGTAAGAGGAATCAGGGCAGAA +
Preference number: 3 (lower is better)
Translates to: EIRGQRGDDHSW*LRGSVRGIRAE
Trigger: TTCTGCCCTGATTCCTCTTACTGACCCTCTAAGTCACCAGCTGTGGTCGTCTCCTCTTTGACCCCTGATCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429762.7
3UTR GCA 72 bp TCAACTCCTAGGTTGTTGAATTCCTTGCACATGGGGTaGCCTGCAGGGGGCAAGTCTGGTAGCAGTGATCAT +
Preference number: 3 (lower is better)
Translates to: STPRLLNSLHMG*PAGGKSGSSDH
Trigger: ATGATCACTGCTACCAGACTTGCCCCCTGCAGGGCACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR-3UTR CAA 90 bp AAGGAGGGGAGTTTCTGTAAGAGCAGCTTTCTGCACCTGTCACTAGGACCTAGCAGGTTGTTGAATTCCTaGCACATGGGGTGCCCTGCA +
Preference number: 3 (lower is better)
Translates to: KEGSFCKSSFLHLSLGPSRLLNS*HMGCPA
Trigger: TGCAGGGCACCCCATGTGCAAGGAATTCAACAACCT...GCTAGGTCCTAGTGACAGGTGCAGAAAGCTGCTCTTACAGAAACTCCCCTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR GCA 72 bp CACAGGAAAATCGGCATGCTTCCTGAGGCAGAACAATaGTACCTGAGCACTTCTCCAGAGGGGCAGACTTTA +
Preference number: 3 (lower is better)
Translates to: HRKIGMLPEAEQ*YLSTSPEGQTL
Trigger: TAAAGTCTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR GCA 72 bp AAAAGGCATGAGGGTCATAGGGGCAAGCTCTTGTGGTaGCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAA +
Preference number: 3 (lower is better)
Translates to: KRHEGHRGKLLW*LQLRDPQFLCK
Trigger: TTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAAGAGCTTGCCCCTATGACCCTCATGCCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000376707.4
3UTR TCA 72 bp TCATCAAGGATGACACAGGAAAATCGGCATGCTTCCTaGGGCAGAACAATGCTACCTGAGCACTTCTCCAGA +
Preference number: 3 (lower is better)
Translates to: SSRMTQENRHAS*GRTMLPEHFSR
Trigger: TCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCTGTGTCATCCTTGATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR-3UTR CAA 90 bp AAGGAGGGGAGTTTCTGTAAGAGCAGCTTTCTGCACCTGTCACTAGGACCTAGCAAGAACACACTGAACTaGGGAGACCAATGCTTTCAA +
Preference number: 3 (lower is better)
Translates to: KEGSFCKSSFLHLSLGPSKNTLN*GDQCFQ
Trigger: TTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTTCTT...GCTAGGTCCTAGTGACAGGTGCAGAAAGCTGCTCTTACAGAAACTCCCCTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR-3UTR CAA 90 bp GACCTAGCTGTCATGACTGCAGGTTTATTCTCATCAGCTGGTAATAGATACGGATCCAGGAGCAGAAGTTaGCACTCGTTCTTTAAGGGT +
Preference number: 3 (lower is better)
Translates to: DLAVMTAGLFSSAGNRYGSRSRS*HSFFKG
Trigger: ACCCTTAAAGAACGAGTGCAAACTTCTGCTCCTGGA...TCCGTATCTATTACCAGCTGATGAGAATAAACCTGCAGTCATGACAGCTAGGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
3UTR-3UTR CAA 90 bp CAGAAAAGTCAGAACAATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATCTCAACTCCTAGGTTGTaGAATTCCTTGCACATGGGG +
Preference number: 3 (lower is better)
Translates to: QKSQNNALVWTVPFQQIISTPRL*NSLHMG
Trigger: CCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGA...GATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATTGTTCTGACTTTTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR-3UTR CAA 90 bp GGCAAAGGAAACGCAGGAAAGGAAAGATTTACAAAATCCAAGTCACTAAAGTGCCCAGCTATCCAACAATaGTTTAAATATGATCCCATG +
Preference number: 3 (lower is better)
Translates to: GKGNAGKERFTKSKSLKCPAIQQ*FKYDPM
Trigger: CATGGGATCATATTTAAACAATTGTTGGATAGCTGG...GCACTTTAGTGACTTGGATTTTGTAAATCTTTCCTTTCCTGCGTTTCCTTTGCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000376709.9
3UTR-3UTR CAA 90 bp TTCATTCATGTGTCTGTATGGAGTCTTCACTATGATGATATCAGATTCTTCTGGCATCTATACAGTACATaGAACCACACATCTCAAATG +
Preference number: 3 (lower is better)
Translates to: FIHVSVWSLHYDDIRFFWHLYST*NHTSQM
Trigger: CATTTGAGATGTGTGGTTCAATGTACTGTATAGATG...CCAGAAGAATCTGATATCATCATAGTGAAGACTCCATACAGACACATGAATGAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376709.9
3UTR CCA 72 bp GCTATTTTTAAAGGAAATGCAGAAACGACTAGAGTATaGGTTTCTTTGAATTCCAATATGCATAGCCTATCA +
Preference number: 3 (lower is better)
Translates to: AIFKGNAETTRV*VSLNSNMHSLS
Trigger: TGATAGGCTATGCATATTGGAATTCAAAGAAACCCATACTCTAGTCGTTTCTGCATTTCCTTTAAAAATAGC
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR GCA 90 bp CATCAGGCACCACCACGGGGTCTGGGGAGCCTGTGTGTCTCCTGCAAAGTCCAGCCGCCGGCGGCTGCGTaGCGAAGCCACAGAGGAGGC +
Preference number: 4 (lower is better)
Translates to: HQAPPRGLGSLCVSCKVQPPAAA*RSHRGG
Trigger: GCCTCCTCTGTGGCTTCGGCACGCAGCCGCCGGCGG...CTGGACTTTGCAGGAGACACACAGGCTCCCCAGACCCCGTGGTGGTGCCTGATG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR GCA 90 bp GGCATGCTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGCGGGCACGGCGCGACTaGCGGACCCTCGCAGCCAGA +
Preference number: 4 (lower is better)
Translates to: GMLPEAEQCYLSTSPEGQRARRD*RTLAAR
Trigger: TCTGGCTGCGAGGGTCCGGCAGTCGCGCCGTGCCCG...CTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCATGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp CAGGGTTCAGCTGAAGGTCATCAGGCACCACCACGGGGTCTGGGGAGCCTGTGTACTCGGCCATCACGCTaGTGCCGCCCCAGCGCTTCT +
Preference number: 4 (lower is better)
Translates to: QGSAEGHQAPPRGLGSLCTRPSR*CRPSAS
Trigger: AGAAGCGCTGGGGCGGCAGCAGCGTGATGGCCGAGT...ACACAGGCTCCCCAGACCCCGTGGTGGTGCCTGATGACCTTCAGCTGAACCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000409285.6
CDS-3UTR GCA 90 bp CTTTCAACTCCTAGGTTGTTGAATTCCTTGCACATGGGGTGCCCTGCAGGGGGCCCGCCGGCGGCTGCGTaGCGAAGCCACAGAGGAGGC +
Preference number: 4 (lower is better)
Translates to: LSTPRLLNSLHMGCPAGGPPAAA*RSHRGG
Trigger: GCCTCCTCTGTGGCTTCGGCACGCAGCCGCCGGCGG...GCCCCCTGCAGGGCACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp GTGTCTCCTGCAAAGTCCAGTGAACGGGAGCCTCCAGGAGCAGAAGTTTGCACTGCCAGATCCCTGTCCTaGGCCAGCGGGCGCCGGCAG +
Preference number: 4 (lower is better)
Translates to: VSPAKSSEREPPGAEVCTARSLS*ASGRRQ
Trigger: CTGCCGGCGCCCGCTGGCCCAGGACAGGGATCTGGC...AGTGCAAACTTCTGCTCCTGGAGGCTCCCGTTCACTGGACTTTGCAGGAGACAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR CCA 90 bp TTGTTGAATTCCTTGCACATGGGGTGCCCTGCAGGGGGCAAGTCTGGTAGCAGTGCCAGATCCCTGTCCTaGGCCAGCGGGCGCCGGCAG +
Preference number: 4 (lower is better)
Translates to: LLNSLHMGCPAGGKSGSSARSLS*ASGRRQ
Trigger: CTGCCGGCGCCCGCTGGCCCAGGACAGGGATCTGGC...ACTGCTACCAGACTTGCCCCCTGCAGGGCACCCCATGTGCAAGGAATTCAACAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp GCACAGGTCAGCCATGCTAGCCGAAGGGGATGCCCATGTGTCATTCATGATGGACTGTCGCTGCGCTTCTaGCGGCCGAGCGCAGGCGGC +
Preference number: 4 (lower is better)
Translates to: AQVSHASRRGCPCVIHDGLSLRF*RPSAGG
Trigger: GCCGCCTGCGCTCGGCCGCCAGAAGCGCAGCGACAG...TCCATCATGAATGACACATGGGCATCCCCTTCGGCTAGCATGGCTGACCTGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR GCA 90 bp ATGCTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGACTCGGGCACGGCGCGACTaGCGGACCCTCGCAGCCAGA +
Preference number: 4 (lower is better)
Translates to: MLPEAEQCYLSTSPEGQTRARRD*RTLAAR
Trigger: TCTGGCTGCGAGGGTCCGGCAGTCGCGCCGTGCCCG...AGTCTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp GCCCTGCAGGGGGCAAGTCTGGTAGCAGTGATCATCAAGGATGACACAGGAAAACGGGCACGGCGCGACTaGCGGACCCTCGCAGCCAGA +
Preference number: 4 (lower is better)
Translates to: ALQGASLVAVIIKDDTGKRARRD*RTLAAR
Trigger: TCTGGCTGCGAGGGTCCGGCAGTCGCGCCGTGCCCG...TTTTCCTGTGTCATCCTTGATGATCACTGCTACCAGACTTGCCCCCTGCAGGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp CATCAGGCACCACCACGGGGTCTGGGGAGCCTGTGTGTCTCCTGCAAAGTCCAGGCCGCTTCTTCCTCTTaGCCAAGGTGGGGGATGCCT +
Preference number: 4 (lower is better)
Translates to: HQAPPRGLGSLCVSCKVQAASSS*PRWGMP
Trigger: AGGCATCCCCCACCTTGGGCAAGAGGAAGAAGCGGC...CTGGACTTTGCAGGAGACACACAGGCTCCCCAGACCCCGTGGTGGTGCCTGATG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR CCA 90 bp ATGCTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGACTCTGTCGCTGCGCTTCTaGCGGCCGAGCGCAGGCGGC +
Preference number: 4 (lower is better)
Translates to: MLPEAEQCYLSTSPEGQTLSLRF*RPSAGG
Trigger: GCCGCCTGCGCTCGGCCGCCAGAAGCGCAGCGACAG...AGTCTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp AAGCTCTTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGCAGCCCAGCAGGTCCGTaGTGGCGAAGCCCCGGGGGC +
Preference number: 4 (lower is better)
Translates to: KLLWCLQLRDPQFLCKGSSPAGP*WRSPGG
Trigger: GCCCCCGGGGCTTCGCCATCACGGACCTGCTGGGCT...GCTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAAGAGCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR GCA 90 bp CAAGCTCTTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGCGGGCACGGCGCGACTaGCGGACCCTCGCAGCCAGA +
Preference number: 4 (lower is better)
Translates to: QALVVPSAKGPSVSMQRERARRD*RTLAAR
Trigger: TCTGGCTGCGAGGGTCCGGCAGTCGCGCCGTGCCCG...CTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAAGAGCTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR GCA 90 bp AAGCTCTTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGCCCGCCGGCGGCTGCGTaGCGAAGCCACAGAGGAGGC +
Preference number: 4 (lower is better)
Translates to: KLLWCLQLRDPQFLCKGSPPAAA*RSHRGG
Trigger: GCCTCCTCTGTGGCTTCGGCACGCAGCCGCCGGCGG...GCTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAAGAGCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR GCA 90 bp CTTTCAACTCCTAGGTTGTTGAATTCCTTGCACATGGGGTGCCCTGCAGGGGGCTGGAGACGCTGTCGCTaGGCTTCTGGCGGCCGAGCG +
Preference number: 4 (lower is better)
Translates to: LSTPRLLNSLHMGCPAGGWRRCR*ASGGRA
Trigger: CGCTCGGCCGCCAGAAGCGCAGCGACAGCGTCTCCA...GCCCCCTGCAGGGCACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp CATCAGGCACCACCACGGGGTCTGGGGAGCCTGTGTGTCTCCTGCAAAGTCCAGAGTCCCGGCCGGTCATaGTTCCTTAGCAAGCAAGGC +
Preference number: 4 (lower is better)
Translates to: HQAPPRGLGSLCVSCKVQSPGRS*FLSKQG
Trigger: GCCTTGCTTGCTAAGGAACCATGACCGGCCGGGACT...CTGGACTTTGCAGGAGACACACAGGCTCCCCAGACCCCGTGGTGGTGCCTGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR CCA 90 bp CAAGCTCTTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGGCCAGATCCCTGTCCTaGGCCAGCGGGCGCCGGCAG +
Preference number: 4 (lower is better)
Translates to: QALVVPSAKGPSVSMQREARSLS*ASGRRQ
Trigger: CTGCCGGCGCCCGCTGGCCCAGGACAGGGATCTGGC...CTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAAGAGCTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR CCA 90 bp TTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGCGTGTTGCTGTCGCTGCGCTTCTaGCGGCCGAGCGCAGGCGGC +
Preference number: 4 (lower is better)
Translates to: LWCLQLRDPQFLCKGSVLLSLRF*RPSAGG
Trigger: GCCGCCTGCGCTCGGCCGCCAGAAGCGCAGCGACAG...CAACACGCTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR GCA 90 bp GGAGCAGAAGTTTGCACTCGTTCTTTAAGGGTGTTTTCCCGATCCTTGGCTCTGCCGCCGGCGGCTGCGTaGCGAAGCCACAGAGGAGGC +
Preference number: 4 (lower is better)
Translates to: GAEVCTRSLRVFSRSLALPPAAA*RSHRGG
Trigger: GCCTCCTCTGTGGCTTCGGCACGCAGCCGCCGGCGG...CAGAGCCAAGGATCGGGAAAACACCCTTAAAGAACGAGTGCAAACTTCTGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR GCA 90 bp CTGGTAGCAGTGATCATCAAGGATGACACAGGAAAATCGGCATGCTTCCTGAGGCCGCCGGCGGCTGCGTaGCGAAGCCACAGAGGAGGC +
Preference number: 4 (lower is better)
Translates to: LVAVIIKDDTGKSACFLRPPAAA*RSHRGG
Trigger: GCCTCCTCTGTGGCTTCGGCACGCAGCCGCCGGCGG...CCTCAGGAAGCATGCCGATTTTCCTGTGTCATCCTTGATGATCACTGCTACCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp CTACCTGAGCACTTCTCCAGAGGGGCAGACTTTAGCAGCATTACAGGGTTCAGCTGGAGACGCTGTCGCTaGGCTTCTGGCGGCCGAGCG +
Preference number: 4 (lower is better)
Translates to: LPEHFSRGADFSSITGFSWRRCR*ASGGRA
Trigger: CGCTCGGCCGCCAGAAGCGCAGCGACAGCGTCTCCA...GCTGAACCCTGTAATGCTGCTAAAGTCTGCCCCTCTGGAGAAGTGCTCAGGTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000444511.6
CDS-3UTR GCA 90 bp CATCAGGCACCACCACGGGGTCTGGGGAGCCTGTGTGTCTCCTGCAAAGTCCAGGTGGGCCTCGCTGAATaGCTTCTCCAACTCTTCCAG +
Preference number: 4 (lower is better)
Translates to: HQAPPRGLGSLCVSCKVQVGLAE*LLQLFQ
Trigger: CTGGAAGAGTTGGAGAAGGCATTCAGCGAGGCCCAC...CTGGACTTTGCAGGAGACACACAGGCTCCCCAGACCCCGTGGTGGTGCCTGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR GCA 90 bp AAGTCCAGTGAACGGGAGCCTCCAGGAGCAGAAGTTTGCACTCGTTCTTTAAGGCGGCCATCACGCTGCTaGCGCCCCAGCGCTTCTCCC +
Preference number: 4 (lower is better)
Translates to: KSSEREPPGAEVCTRSLRRPSRC*RPSASP
Trigger: GGGAGAAGCGCTGGGGCGGCAGCAGCGTGATGGCCG...CCTTAAAGAACGAGTGCAAACTTCTGCTCCTGGAGGCTCCCGTTCACTGGACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000409285.6
CDS-3UTR GCA 90 bp GGCATGCTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGCCAGGAGCAGAAGTTTaGACCAGGAGCCAGGGCGCG +
Preference number: 4 (lower is better)
Translates to: GMLPEAEQCYLSTSPEGQPGAEV*TRSQGA
Trigger: CGCGCCCTGGCTCCTGGTGCAAACTTCTGCTCCTGG...CTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCATGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR CCA 90 bp GGGAGTTTCTGTAAGAGCAGCTTTCTGCACCTGTCACTAGGACCTAGCTGTCATGCCAGATCCCTGTCCTaGGCCAGCGGGCGCCGGCAG +
Preference number: 4 (lower is better)
Translates to: GSFCKSSFLHLSLGPSCHARSLS*ASGRRQ
Trigger: CTGCCGGCGCCCGCTGGCCCAGGACAGGGATCTGGC...ATGACAGCTAGGTCCTAGTGACAGGTGCAGAAAGCTGCTCTTACAGAAACTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp ACTTCTCCAGAGGGGCAGACTTTAGCAGCATTACAGGGTTCAGCTGAAGGTCATCTGTCGCTGCGCTTCTaGCGGCCGAGCGCAGGCGGC +
Preference number: 4 (lower is better)
Translates to: TSPEGQTLAALQGSAEGHLSLRF*RPSAGG
Trigger: GCCGCCTGCGCTCGGCCGCCAGAAGCGCAGCGACAG...ATGACCTTCAGCTGAACCCTGTAATGCTGCTAAAGTCTGCCCCTCTGGAGAAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR TCA 90 bp GGCATGCTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGCCAGCTGGTGAGCAGTaGAAACTGTCCTGTGCCGCC +
Preference number: 4 (lower is better)
Translates to: GMLPEAEQCYLSTSPEGQPAGEQ*KLSCAA
Trigger: GGCGGCACAGGACAGTTTTCACTGCTCACCAGCTGG...CTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCATGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp GCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGACTTTAGCAGCATTACGCCCTCGGCGGAGTTaGGCACGGAGTCTGGCAGCG +
Preference number: 4 (lower is better)
Translates to: AEQCYLSTSPEGQTLAALRPRRS*ARSLAA
Trigger: CGCTGCCAGACTCCGTGCTCAACTCCGCCGAGGGCG...TAATGCTGCTAAAGTCTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000429762.7
CDS-3UTR GCA 90 bp AATGCCAGTGAGGAATATGCACATTTTCAGCCTTTGACAGTGGGACCTGTGGGTCCGCCGGCGGCTGCGTaGCGAAGCCACAGAGGAGGC +
Preference number: 4 (lower is better)
Translates to: NASEEYAHFQPLTVGPVGPPAAA*RSHRGG
Trigger: GCCTCCTCTGTGGCTTCGGCACGCAGCCGCCGGCGG...ACCCACAGGTCCCACTGTCAAAGGCTGAAAATGTGCATATTCCTCACTGGCATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR GCA 90 bp CAAGCTCTTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGTGGAGACGCTGTCGCTaGGCTTCTGGCGGCCGAGCG +
Preference number: 4 (lower is better)
Translates to: QALVVPSAKGPSVSMQREWRRCR*ASGGRA
Trigger: CGCTCGGCCGCCAGAAGCGCAGCGACAGCGTCTCCA...CTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAAGAGCTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR GCA 90 bp CTGCAGGGGGCAAGTCTGGTAGCAGTGATCATCAAGGATGACACAGGAAAATCGTGGAGACGCTGTCGCTaGGCTTCTGGCGGCCGAGCG +
Preference number: 4 (lower is better)
Translates to: LQGASLVAVIIKDDTGKSWRRCR*ASGGRA
Trigger: CGCTCGGCCGCCAGAAGCGCAGCGACAGCGTCTCCA...CGATTTTCCTGTGTCATCCTTGATGATCACTGCTACCAGACTTGCCCCCTGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp AATGCCAGTGAGGAATATGCACATTTTCAGCCTTTGACAGTGGGACCTGTGGGTGCCAGATCCCTGTCCTaGGCCAGCGGGCGCCGGCAG +
Preference number: 4 (lower is better)
Translates to: NASEEYAHFQPLTVGPVGARSLS*ASGRRQ
Trigger: CTGCCGGCGCCCGCTGGCCCAGGACAGGGATCTGGC...ACCCACAGGTCCCACTGTCAAAGGCTGAAAATGTGCATATTCCTCACTGGCATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CCA 90 bp ATCAAGGATGACACAGGAAAATCGGCATGCTTCCTGAGGCAGAACAATGCTACCGCCAGATCCCTGTCCTaGGCCAGCGGGCGCCGGCAG +
Preference number: 4 (lower is better)
Translates to: IKDDTGKSACFLRQNNATARSLS*ASGRRQ
Trigger: CTGCCGGCGCCCGCTGGCCCAGGACAGGGATCTGGC...GGTAGCATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCTGTGTCATCCTTGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp GGCACCACCACGGGGTCTGGGGAGCCTGTGTGTCTCCTGCAAAGTCCAGTGAACTTCCTGTCTTCAGACTaGCTGTCCTCATCGGACGTG +
Preference number: 4 (lower is better)
Translates to: GTTTGSGEPVCLLQSPVNFLSSD*LSSSDV
Trigger: CACGTCCGATGAGGACAGCCAGTCTGAAGACAGGAA...GTTCACTGGACTTTGCAGGAGACACACAGGCTCCCCAGACCCCGTGGTGGTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR CCA 90 bp GGCAGGCACAGGTCAGCCATGCTAGCCGAAGGGGATGCCCATGTGTCATTCATGGGGGAACTCTTAAGTTaGAGTAGCTGGGGCAGTGGC +
Preference number: 4 (lower is better)
Translates to: GRHRSAMLAEGDAHVSFMGELLS*SSWGSG
Trigger: GCCACTGCCCCAGCTACTCCAACTTAAGAGTTCCCC...CATGAATGACACATGGGCATCCCCTTCGGCTAGCATGGCTGACCTGTGCCTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR TCA 90 bp CATTACAGGGTTCAGCTGAAGGTCATCAGGCACCACCACGGGGTCTGGGGAGCCAACTCTTCCAGCTGGTaGGCAGTGAAAACTGTCCTG +
Preference number: 4 (lower is better)
Translates to: HYRVQLKVIRHHHGVWGANSSSW*AVKTVL
Trigger: CAGGACAGTTTTCACTGCTCACCAGCTGGAAGAGTT...GGCTCCCCAGACCCCGTGGTGGTGCCTGATGACCTTCAGCTGAACCCTGTAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR GCA 90 bp GGCATGCTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGGTGGGCCTCGCTGAATaGCTTCTCCAACTCTTCCAG +
Preference number: 4 (lower is better)
Translates to: GMLPEAEQCYLSTSPEGQVGLAE*LLQLFQ
Trigger: CTGGAAGAGTTGGAGAAGGCATTCAGCGAGGCCCAC...CTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp GTTCCGAGTGATAGACAAAGCCTCTTAATAAGGAGGGGAGTTTCTGTAAGAGCACTGTCGCTGCGCTTCTaGCGGCCGAGCGCAGGCGGC +
Preference number: 4 (lower is better)
Translates to: VPSDRQSLLIRRGVSVRALSLRF*RPSAGG
Trigger: GCCGCCTGCGCTCGGCCGCCAGAAGCGCAGCGACAG...TGCTCTTACAGAAACTCCCCTCCTTATTAAGAGGCTTTGTCTATCACTCGGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp CTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGACTTTAGTTGAGCACGGAGTCTaGCAGCGGGATGCAGTGGCG +
Preference number: 4 (lower is better)
Translates to: LPEAEQCYLSTSPEGQTLVEHGV*QRDAVA
Trigger: CGCCACTGCATCCCGCTGCCAGACTCCGTGCTCAAC...TAAAGTCTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000429762.7
CDS-3UTR TCA 90 bp CACACATCTCAAATGATGCCCAGCAGTGAAATCATTTTTGAACTTCGGATCCTCAGCCCAGCAGGTCCGTaGTGGCGAAGCCCCGGGGGC +
Preference number: 4 (lower is better)
Translates to: HTSQMMPSSEIIFELRILSPAGP*WRSPGG
Trigger: GCCCCCGGGGCTTCGCCATCACGGACCTGCTGGGCT...GAGGATCCGAAGTTCAAAAATGATTTCACTGCTGGGCATCATTTGAGATGTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR TCA 90 bp CAGAACAATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATCTTGAGTAGAAGCCCAGCAGGTCCGTaGTGGCGAAGCCCCGGGGGC +
Preference number: 4 (lower is better)
Translates to: QNNALVWTVPFQQIILSRSPAGP*WRSPGG
Trigger: GCCCCCGGGGCTTCGCCATCACGGACCTGCTGGGCT...TCTACTCAAGATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATTGTTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp AACAATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATCTTGAGTAGAAGCAGCCCAGCAGGTCCGTaGTGGCGAAGCCCCGGGGGC +
Preference number: 4 (lower is better)
Translates to: NNALVWTVPFQQIILSRSSPAGP*WRSPGG
Trigger: GCCCCCGGGGCTTCGCCATCACGGACCTGCTGGGCT...GCTTCTACTCAAGATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATTGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp AATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATCTTGAGTAGAAGCAGTAGCCCAGCAGGTCCGTaGTGGCGAAGCCCCGGGGGC +
Preference number: 4 (lower is better)
Translates to: NALVWTVPFQQIILSRSSSPAGP*WRSPGG
Trigger: GCCCCCGGGGCTTCGCCATCACGGACCTGCTGGGCT...ACTGCTTCTACTCAAGATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp TTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGCGTGTTGCCAGCTGGTGAGCAGTaGAAACTGTCCTGTGCCGCC +
Preference number: 4 (lower is better)
Translates to: LWCLQLRDPQFLCKGSVLPAGEQ*KLSCAA
Trigger: GGCGGCACAGGACAGTTTTCACTGCTCACCAGCTGG...CAACACGCTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR TCA 90 bp CTGCAGGGGGCAAGTCTGGTAGCAGTGATCATCAAGGATGACACAGGAAAATCGCCAGCTGGTGAGCAGTaGAAACTGTCCTGTGCCGCC +
Preference number: 4 (lower is better)
Translates to: LQGASLVAVIIKDDTGKSPAGEQ*KLSCAA
Trigger: GGCGGCACAGGACAGTTTTCACTGCTCACCAGCTGG...CGATTTTCCTGTGTCATCCTTGATGATCACTGCTACCAGACTTGCCCCCTGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp AATGCCAGTGAGGAATATGCACATTTTCAGCCTTTGACAGTGGGACCTGTGGGTGAGTTGGAGCCTCCTTaGGCACCAGCCCCAGGGTGC +
Preference number: 4 (lower is better)
Translates to: NASEEYAHFQPLTVGPVGELEPP*APAPGC
Trigger: GCACCCTGGGGCTGGTGCTCAAGGAGGCTCCAACTC...ACCCACAGGTCCCACTGTCAAAGGCTGAAAATGTGCATATTCCTCACTGGCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR TCA 90 bp AGGAAAATCGGCATGCTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCAACATGGGTGCCAAGCTaGGCACCCAGGCAGGCACAG +
Preference number: 4 (lower is better)
Translates to: RKIGMLPEAEQCYLSTSPTWVPS*APRQAQ
Trigger: CTGTGCCTGCCTGGGTGCTCAGCTTGGCACCCATGT...TGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR GCA 90 bp CAAGCTCTTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGGCCGCTTCTTCCTCTTaGCCAAGGTGGGGGATGCCT +
Preference number: 4 (lower is better)
Translates to: QALVVPSAKGPSVSMQREAASSS*PRWGMP
Trigger: AGGCATCCCCCACCTTGGGCAAGAGGAAGAAGCGGC...CTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAAGAGCTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR GCA 90 bp CTGCAGGGGGCAAGTCTGGTAGCAGTGATCATCAAGGATGACACAGGAAAATCGGCCGCTTCTTCCTCTTaGCCAAGGTGGGGGATGCCT +
Preference number: 4 (lower is better)
Translates to: LQGASLVAVIIKDDTGKSAASSS*PRWGMP
Trigger: AGGCATCCCCCACCTTGGGCAAGAGGAAGAAGCGGC...CGATTTTCCTGTGTCATCCTTGATGATCACTGCTACCAGACTTGCCCCCTGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp CTTTCAACTCCTAGGTTGTTGAATTCCTTGCACATGGGGTGCCCTGCAGGGGGCGTGGGCCTCGCTGAATaGCTTCTCCAACTCTTCCAG +
Preference number: 4 (lower is better)
Translates to: LSTPRLLNSLHMGCPAGGVGLAE*LLQLFQ
Trigger: CTGGAAGAGTTGGAGAAGGCATTCAGCGAGGCCCAC...GCCCCCTGCAGGGCACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp GTTCCGAGTGATAGACAAAGCCTCTTAATAAGGAGGGGAGTTTCTGTAAGAGCACGGCCATCACGCTGCTaGCGCCCCAGCGCTTCTCCC +
Preference number: 4 (lower is better)
Translates to: VPSDRQSLLIRRGVSVRARPSRC*RPSASP
Trigger: GGGAGAAGCGCTGGGGCGGCAGCAGCGTGATGGCCG...TGCTCTTACAGAAACTCCCCTCCTTATTAAGAGGCTTTGTCTATCACTCGGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000429762.7
CDS-3UTR GCA 90 bp AATGCCAGTGAGGAATATGCACATTTTCAGCCTTTGACAGTGGGACCTGTGGGTACTCGGCCATCACGCTaGTGCCGCCCCAGCGCTTCT +
Preference number: 4 (lower is better)
Translates to: NASEEYAHFQPLTVGPVGTRPSR*CRPSAS
Trigger: AGAAGCGCTGGGGCGGCAGCAGCGTGATGGCCGAGT...ACCCACAGGTCCCACTGTCAAAGGCTGAAAATGTGCATATTCCTCACTGGCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR GCA 90 bp CTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGACTTTATCCTTGCACATGGGGTaGCCTGCAGGGGGCAAGTCT +
Preference number: 4 (lower is better)
Translates to: LPEAEQCYLSTSPEGQTLSLHMG*PAGGKS
Trigger: AGACTTGCCCCCTGCAGGGCACCCCATGTGCAAGGA...TAAAGTCTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp CACACATCTCAAATGATGCCCAGCAGTGAAATCATTTTTGAACTTCGGATCCTCCTGTCGCTGCGCTTCTaGCGGCCGAGCGCAGGCGGC +
Preference number: 4 (lower is better)
Translates to: HTSQMMPSSEIIFELRILLSLRF*RPSAGG
Trigger: GCCGCCTGCGCTCGGCCGCCAGAAGCGCAGCGACAG...GAGGATCCGAAGTTCAAAAATGATTTCACTGCTGGGCATCATTTGAGATGTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CCA 90 bp AAGCTCTTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGCTGTCCTCATCGGACGTaGAGACGCTGTCGCTGCGCT +
Preference number: 4 (lower is better)
Translates to: KLLWCLQLRDPQFLCKGSCPHRT*RRCRCA
Trigger: AGCGCAGCGACAGCGTCTCCACGTCCGATGAGGACA...GCTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAAGAGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR CCA 90 bp AAGAGCAGCTTTCTGCACCTGTCACTAGGACCTAGCTGTCATGACTGCAGGTTTTGCAGTGGCGCACCATaGCCCCGTACAGCCCGTACT +
Preference number: 4 (lower is better)
Translates to: KSSFLHLSLGPSCHDCRFCSGAP*PRTART
Trigger: AGTACGGGCTGTACGGGGCCATGGTGCGCCACTGCA...AAACCTGCAGTCATGACAGCTAGGTCCTAGTGACAGGTGCAGAAAGCTGCTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000429762.7
CDS-3UTR CCA 90 bp AGGCACCACCACGGGGTCTGGGGAGCCTGTGTGTCTCCTGCAAAGTCCAGTGAAGTCAGAACAATGCCCTaGTATGGACAGTTCCCTTTC +
Preference number: 4 (lower is better)
Translates to: RHHHGVWGACVSPAKSSEVRTMP*YGQFPF
Trigger: GAAAGGGAACTGTCCATACCAGGGCATTGTTCTGAC...TTCACTGGACTTTGCAGGAGACACACAGGCTCCCCAGACCCCGTGGTGGTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR TCA 90 bp AATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATCTTGAGTAGAAGCAGTCGCCCTCGGCGGAGTTaGGCACGGAGTCTGGCAGCG +
Preference number: 4 (lower is better)
Translates to: NALVWTVPFQQIILSRSSRPRRS*ARSLAA
Trigger: CGCTGCCAGACTCCGTGCTCAACTCCGCCGAGGGCG...ACTGCTTCTACTCAAGATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000429762.7
CDS-3UTR TCA 90 bp AGGCACCACCACGGGGTCTGGGGAGCCTGTGTGTCTCCTGCAAAGTCCAGTGAAAGTGATCATCAAGGATaGCACAGGAAAATCGGCATG +
Preference number: 4 (lower is better)
Translates to: RHHHGVWGACVSPAKSSESDHQG*HRKIGM
Trigger: CATGCCGATTTTCCTGTGTCATCCTTGATGATCACT...TTCACTGGACTTTGCAGGAGACACACAGGCTCCCCAGACCCCGTGGTGGTGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR TCA 90 bp AGGTTGTTGAATTCCTTGCACATGGGGTGCCCTGCAGGGGGCAAGTCTGGTAGCAGCAACATAGGAGACTaGGGTGGGAGGATCACTTCA +
Preference number: 4 (lower is better)
Translates to: RLLNSLHMGCPAGGKSGSSNIGD*GGRITS
Trigger: TGAAGTGATCCTCCCACCTCAGTCTCCTATGTTGCT...GCTACCAGACTTGCCCCCTGCAGGGCACCCCATGTGCAAGGAATTCAACAACCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR TCA 90 bp CTTTCAACTCCTAGGTTGTTGAATTCCTTGCACATGGGGTGCCCTGCAGGGGGCTTTCAAAGCCCGGGTTaGGATCAGGGGTCAAAGAGG +
Preference number: 4 (lower is better)
Translates to: LSTPRLLNSLHMGCPAGGFQSPG*DQGSKR
Trigger: CCTCTTTGACCCCTGATCTCAACCCGGGCTTTGAAA...GCCCCCTGCAGGGCACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR GCA 90 bp AAGAGCAGCTTTCTGCACCTGTCACTAGGACCTAGCTGTCATGACTGCAGGTTTGCCGCTTCTTCCTCTTaGCCAAGGTGGGGGATGCCT +
Preference number: 4 (lower is better)
Translates to: KSSFLHLSLGPSCHDCRFAASSS*PRWGMP
Trigger: AGGCATCCCCCACCTTGGGCAAGAGGAAGAAGCGGC...AAACCTGCAGTCATGACAGCTAGGTCCTAGTGACAGGTGCAGAAAGCTGCTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp CTTTCAACTCCTAGGTTGTTGAATTCCTTGCACATGGGGTGCCCTGCAGGGGGCGTGAAAACTGTCCTGTaGCGCCGCTTCTTCCTCTTG +
Preference number: 4 (lower is better)
Translates to: LSTPRLLNSLHMGCPAGGVKTVL*RRFFLL
Trigger: CAAGAGGAAGAAGCGGCGGCACAGGACAGTTTTCAC...GCCCCCTGCAGGGCACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp TTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGCGTGTTGAGTCCCGGCCGGTCATaGTTCCTTAGCAAGCAAGGC +
Preference number: 4 (lower is better)
Translates to: LWCLQLRDPQFLCKGSVLSPGRS*FLSKQG
Trigger: GCCTTGCTTGCTAAGGAACCATGACCGGCCGGGACT...CAACACGCTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR CCA 90 bp CACCTGTCACTAGGACCTAGCTGTCATGACTGCAGGTTTATTCTCATCAGCTGGTGTCCTCATCGGACGTaGAGACGCTGTCGCTGCGCT +
Preference number: 4 (lower is better)
Translates to: HLSLGPSCHDCRFILISWCPHRT*RRCRCA
Trigger: AGCGCAGCGACAGCGTCTCCACGTCCGATGAGGACA...CCAGCTGATGAGAATAAACCTGCAGTCATGACAGCTAGGTCCTAGTGACAGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp AGGAAAATCGGCATGCTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCATGTCCTCATCGGACGTaGAGACGCTGTCGCTGCGCT +
Preference number: 4 (lower is better)
Translates to: RKIGMLPEAEQCYLSTSPCPHRT*RRCRCA
Trigger: AGCGCAGCGACAGCGTCTCCACGTCCGATGAGGACA...TGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp CTTTCAACTCCTAGGTTGTTGAATTCCTTGCACATGGGGTGCCCTGCAGGGGGCTCCTCTTGCCCAAGGTaGGGGATGCCTTTAGGTCAT +
Preference number: 4 (lower is better)
Translates to: LSTPRLLNSLHMGCPAGGSSCPR*GMPLGH
Trigger: ATGACCTAAAGGCATCCCCCACCTTGGGCAAGAGGA...GCCCCCTGCAGGGCACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp AATGCCAGTGAGGAATATGCACATTTTCAGCCTTTGACAGTGGGACCTGTGGGTTGCAGTGGCGCACCATaGCCCCGTACAGCCCGTACT +
Preference number: 4 (lower is better)
Translates to: NASEEYAHFQPLTVGPVGCSGAP*PRTART
Trigger: AGTACGGGCTGTACGGGGCCATGGTGCGCCACTGCA...ACCCACAGGTCCCACTGTCAAAGGCTGAAAATGTGCATATTCCTCACTGGCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR TCA 90 bp GCAAAGTCCAGTGAACGGGAGCCTCCAGGAGCAGAAGTTTGCACTCGTTCTTTACAGAACAATGCTACCTaGGCACTTCTCCAGAGGGGC +
Preference number: 4 (lower is better)
Translates to: AKSSEREPPGAEVCTRSLQNNAT*ALLQRG
Trigger: GCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTG...TAAAGAACGAGTGCAAACTTCTGCTCCTGGAGGCTCCCGTTCACTGGACTTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR GCA 90 bp CAGAAAAGTCAGAACAATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATCTGGAGACGCTGTCGCTaGGCTTCTGGCGGCCGAGCG +
Preference number: 4 (lower is better)
Translates to: QKSQNNALVWTVPFQQIIWRRCR*ASGGRA
Trigger: CGCTCGGCCGCCAGAAGCGCAGCGACAGCGTCTCCA...GATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATTGTTCTGACTTTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp TTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGCGTGTTGGTGGGCCTCGCTGAATaGCTTCTCCAACTCTTCCAG +
Preference number: 4 (lower is better)
Translates to: LWCLQLRDPQFLCKGSVLVGLAE*LLQLFQ
Trigger: CTGGAAGAGTTGGAGAAGGCATTCAGCGAGGCCCAC...CAACACGCTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR GCA 90 bp CTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGACTTTAGTGGGCCTCGCTGAATaGCTTCTCCAACTCTTCCAG +
Preference number: 4 (lower is better)
Translates to: LPEAEQCYLSTSPEGQTLVGLAE*LLQLFQ
Trigger: CTGGAAGAGTTGGAGAAGGCATTCAGCGAGGCCCAC...TAAAGTCTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp TTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGCGTGTTGGGCAAGCTCTTGTGGTaGCTTCAGCTAAGGGACCCT +
Preference number: 4 (lower is better)
Translates to: LWCLQLRDPQFLCKGSVLGKLLW*LQLRDP
Trigger: AGGGTCCCTTAGCTGAAGGCACCACAAGAGCTTGCC...CAACACGCTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR GCA 90 bp GGCAAAGGAAACGCAGGAAAGGAAAGATTTACAAAATCCAAGTCACTAAAGTGCCGGCCATCACGCTGCTaGCGCCCCAGCGCTTCTCCC +
Preference number: 4 (lower is better)
Translates to: GKGNAGKERFTKSKSLKCRPSRC*RPSASP
Trigger: GGGAGAAGCGCTGGGGCGGCAGCAGCGTGATGGCCG...GCACTTTAGTGACTTGGATTTTGTAAATCTTTCCTTTCCTGCGTTTCCTTTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR GCA 90 bp GACCTAGCTGTCATGACTGCAGGTTTATTCTCATCAGCTGGTAATAGATACGGAACTCGGCCATCACGCTaGTGCCGCCCCAGCGCTTCT +
Preference number: 4 (lower is better)
Translates to: DLAVMTAGLFSSAGNRYGTRPSR*CRPSAS
Trigger: AGAAGCGCTGGGGCGGCAGCAGCGTGATGGCCGAGT...TCCGTATCTATTACCAGCTGATGAGAATAAACCTGCAGTCATGACAGCTAGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000429762.7
CDS-3UTR GCA 90 bp CACACATCTCAAATGATGCCCAGCAGTGAAATCATTTTTGAACTTCGGATCCTCCTGGGGCCCCTCCAGTaGCGTGGAGTTGGAGCCTCC +
Preference number: 4 (lower is better)
Translates to: HTSQMMPSSEIIFELRILLGPLQ*RGVGAS
Trigger: GGAGGCTCCAACTCCACGGCACTGGAGGGGCCCCAG...GAGGATCCGAAGTTCAAAAATGATTTCACTGCTGGGCATCATTTGAGATGTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR GCA 90 bp ATCAAGGATGACACAGGAAAATCGGCATGCTTCCTGAGGCAGAACAATGCTACCTCCTTGCACATGGGGTaGCCTGCAGGGGGCAAGTCT +
Preference number: 4 (lower is better)
Translates to: IKDDTGKSACFLRQNNATSLHMG*PAGGKS
Trigger: AGACTTGCCCCCTGCAGGGCACCCCATGTGCAAGGA...GGTAGCATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCTGTGTCATCCTTGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp CACCTGTCACTAGGACCTAGCTGTCATGACTGCAGGTTTATTCTCATCAGCTGGAGTCCCGGCCGGTCATaGTTCCTTAGCAAGCAAGGC +
Preference number: 4 (lower is better)
Translates to: HLSLGPSCHDCRFILISWSPGRS*FLSKQG
Trigger: GCCTTGCTTGCTAAGGAACCATGACCGGCCGGGACT...CCAGCTGATGAGAATAAACCTGCAGTCATGACAGCTAGGTCCTAGTGACAGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp AATGCCAGTGAGGAATATGCACATTTTCAGCCTTTGACAGTGGGACCTGTGGGTTGTCCTCATCGGACGTaGAGACGCTGTCGCTGCGCT +
Preference number: 4 (lower is better)
Translates to: NASEEYAHFQPLTVGPVGCPHRT*RRCRCA
Trigger: AGCGCAGCGACAGCGTCTCCACGTCCGATGAGGACA...ACCCACAGGTCCCACTGTCAAAGGCTGAAAATGTGCATATTCCTCACTGGCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CCA 90 bp AGTTTCTGTAAGAGCAGCTTTCTGCACCTGTCACTAGGACCTAGCTGTCATGACTGTCCTCATCGGACGTaGAGACGCTGTCGCTGCGCT +
Preference number: 4 (lower is better)
Translates to: SFCKSSFLHLSLGPSCHDCPHRT*RRCRCA
Trigger: AGCGCAGCGACAGCGTCTCCACGTCCGATGAGGACA...GTCATGACAGCTAGGTCCTAGTGACAGGTGCAGAAAGCTGCTCTTACAGAAACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp CAAGCTCTTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGAGGGGCAAGCTCTTGTaGTGCCTTCAGCTAAGGGAC +
Preference number: 4 (lower is better)
Translates to: QALVVPSAKGPSVSMQRERGKLL*CLQLRD
Trigger: GTCCCTTAGCTGAAGGCACCACAAGAGCTTGCCCCT...CTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAAGAGCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR TCA 90 bp CTGCAGGGGGCAAGTCTGGTAGCAGTGATCATCAAGGATGACACAGGAAAATCGATTACAGGGTTCAGCTaGAGGTCATCAGGCACCACC +
Preference number: 4 (lower is better)
Translates to: LQGASLVAVIIKDDTGKSITGFS*RSSGTT
Trigger: GGTGGTGCCTGATGACCTTCAGCTGAACCCTGTAAT...CGATTTTCCTGTGTCATCCTTGATGATCACTGCTACCAGACTTGCCCCCTGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp GGAGCAGAAGTTTGCACTCGTTCTTTAAGGGTGTTTTCCCGATCCTTGGCTCTGCAGAACAATGCTACCTaGGCACTTCTCCAGAGGGGC +
Preference number: 4 (lower is better)
Translates to: GAEVCTRSLRVFSRSLALQNNAT*ALLQRG
Trigger: GCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTG...CAGAGCCAAGGATCGGGAAAACACCCTTAAAGAACGAGTGCAAACTTCTGCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR TCA 90 bp AGGAAAATCGGCATGCTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCACAGAACAATGCTACCTaGGCACTTCTCCAGAGGGGC +
Preference number: 4 (lower is better)
Translates to: RKIGMLPEAEQCYLSTSPQNNAT*ALLQRG
Trigger: GCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTG...TGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp GGCATGCTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGCAAGGCATTTTGGGTTaGGGAAGTCCAGAAAAGTCA +
Preference number: 4 (lower is better)
Translates to: GMLPEAEQCYLSTSPEGQQGILG*GSPEKS
Trigger: TGACTTTTCTGGACTTCCTCAACCCAAAATGCCTTG...CTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCATGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp TTCATTCATGTGTCTGTATGGAGTCTTCACTATGATGATATCAGATTCTTCTGGCGGGCACGGCGCGACTaGCGGACCCTCGCAGCCAGA +
Preference number: 4 (lower is better)
Translates to: FIHVSVWSLHYDDIRFFWRARRD*RTLAAR
Trigger: TCTGGCTGCGAGGGTCCGGCAGTCGCGCCGTGCCCG...CCAGAAGAATCTGATATCATCATAGTGAAGACTCCATACAGACACATGAATGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR GCA 90 bp AGGGGCAAGCTCTTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGTGAAAACTGTCCTGTaGCGCCGCTTCTTCCTCTTG +
Preference number: 4 (lower is better)
Translates to: RGKLLWCLQLRDPQFLCKVKTVL*RRFFLL
Trigger: CAAGAGGAAGAAGCGGCGGCACAGGACAGTTTTCAC...TTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAAGAGCTTGCCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR GCA 90 bp AGGTTGTTGAATTCCTTGCACATGGGGTGCCCTGCAGGGGGCAAGTCTGGTAGCACAGGAAAATCGGCATaGTTCCTGAGGCAGAACAAT +
Preference number: 4 (lower is better)
Translates to: RLLNSLHMGCPAGGKSGSTGKSA*FLRQNN
Trigger: ATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCTGT...GCTACCAGACTTGCCCCCTGCAGGGCACCCCATGTGCAAGGAATTCAACAACCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp GGCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGACTTTAGCAGCATTGACAGAGTGAGACCCTaGCCTAACACTCAGGGTCTT +
Preference number: 4 (lower is better)
Translates to: GRTMLPEHFSRGADFSSIDRVRP*PNTQGL
Trigger: AAGACCCTGAGTGTTAGGGCAGGGTCTCACTCTGTC...AATGCTGCTAAAGTCTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR CCA 90 bp AGGGGCAAGCTCTTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAATTCCTGTCTTCAGACTaGCTGTCCTCATCGGACGTG +
Preference number: 4 (lower is better)
Translates to: RGKLLWCLQLRDPQFLCKFLSSD*LSSSDV
Trigger: CACGTCCGATGAGGACAGCCAGTCTGAAGACAGGAA...TTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAAGAGCTTGCCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR CCA 90 bp AAGCTCTTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGCTCCTCTTGCCCAAGGTaGGGGATGCCTTTAGGTCAT +
Preference number: 4 (lower is better)
Translates to: KLLWCLQLRDPQFLCKGSSSCPR*GMPLGH
Trigger: ATGACCTAAAGGCATCCCCCACCTTGGGCAAGAGGA...GCTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAAGAGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR CCA 90 bp ACGGAAAAGAACACACTGAACTTGGGAGACCAATGCTTTCAACTCCTAGGTTGTTGCAGTGGCGCACCATaGCCCCGTACAGCCCGTACT +
Preference number: 4 (lower is better)
Translates to: TEKNTLNLGDQCFQLLGCCSGAP*PRTART
Trigger: AGTACGGGCTGTACGGGGCCATGGTGCGCCACTGCA...ACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTTCTTTTCCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000429762.7
CDS-3UTR CCA 90 bp GATACGGAAAAGAACACACTGAACTTGGGAGACCAATGCTTTCAACTCCTAGGTGTTGAGCACGGAGTCTaGCAGCGGGATGCAGTGGCG +
Preference number: 4 (lower is better)
Translates to: DTEKNTLNLGDQCFQLLGVEHGV*QRDAVA
Trigger: CGCCACTGCATCCCGCTGCCAGACTCCGTGCTCAAC...ACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTTCTTTTCCGTATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000429762.7
CDS-3UTR CCA 90 bp AGGTTGTTGAATTCCTTGCACATGGGGTGCCCTGCAGGGGGCAAGTCTGGTAGCAACAATGCCCTGGTATaGACAGTTCCCTTTCAACAG +
Preference number: 4 (lower is better)
Translates to: RLLNSLHMGCPAGGKSGSNNALV*TVPFQQ
Trigger: CTGTTGAAAGGGAACTGTCCATACCAGGGCATTGTT...GCTACCAGACTTGCCCCCTGCAGGGCACCCCATGTGCAAGGAATTCAACAACCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp CTGCAGGGGGCAAGTCTGGTAGCAGTGATCATCAAGGATGACACAGGAAAATCGCATAGGAGACTGAGGTaGGAGGATCACTTCAGCCCA +
Preference number: 4 (lower is better)
Translates to: LQGASLVAVIIKDDTGKSHRRLR*EDHFSP
Trigger: TGGGCTGAAGTGATCCTCCCACCTCAGTCTCCTATG...CGATTTTCCTGTGTCATCCTTGATGATCACTGCTACCAGACTTGCCCCCTGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR TCA 90 bp GAAGCAGTTCCGAGTGATAGACAAAGCCTCTTAATAAGGAGGGGAGTTTCTGTACCAGCTGGTGAGCAGTaGAAACTGTCCTGTGCCGCC +
Preference number: 4 (lower is better)
Translates to: EAVPSDRQSLLIRRGVSVPAGEQ*KLSCAA
Trigger: GGCGGCACAGGACAGTTTTCACTGCTCACCAGCTGG...TACAGAAACTCCCCTCCTTATTAAGAGGCTTTGTCTATCACTCGGAACTGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp AAGCTCTTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGCAACTCTTCCAGCTGGTaGGCAGTGAAAACTGTCCTG +
Preference number: 4 (lower is better)
Translates to: KLLWCLQLRDPQFLCKGSNSSSW*AVKTVL
Trigger: CAGGACAGTTTTCACTGCTCACCAGCTGGAAGAGTT...GCTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAAGAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR TCA 90 bp TTCATTCATGTGTCTGTATGGAGTCTTCACTATGATGATATCAGATTCTTCTGGCGCCCTCGGCGGAGTTaGGCACGGAGTCTGGCAGCG +
Preference number: 4 (lower is better)
Translates to: FIHVSVWSLHYDDIRFFWRPRRS*ARSLAA
Trigger: CGCTGCCAGACTCCGTGCTCAACTCCGCCGAGGGCG...CCAGAAGAATCTGATATCATCATAGTGAAGACTCCATACAGACACATGAATGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR TCA 90 bp AGTGAACGGGAGCCTCCAGGAGCAGAAGTTTGCACTCGTTCTTTAAGGGTGTTTATTACAGGGTTCAGCTaGAGGTCATCAGGCACCACC +
Preference number: 4 (lower is better)
Translates to: SEREPPGAEVCTRSLRVFITGFS*RSSGTT
Trigger: GGTGGTGCCTGATGACCTTCAGCTGAACCCTGTAAT...AAACACCCTTAAAGAACGAGTGCAAACTTCTGCTCCTGGAGGCTCCCGTTCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR TCA 90 bp GCCCTGCAGGGGGCAAGTCTGGTAGCAGTGATCATCAAGGATGACACAGGAAAACGGAAAAGAACACACTaGACTTGGGAGACCAATGCT +
Preference number: 4 (lower is better)
Translates to: ALQGASLVAVIIKDDTGKRKRTH*TWETNA
Trigger: AGCATTGGTCTCCCAAGTTCAGTGTGTTCTTTTCCG...TTTTCCTGTGTCATCCTTGATGATCACTGCTACCAGACTTGCCCCCTGCAGGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp GCACAGGTCAGCCATGCTAGCCGAAGGGGATGCCCATGTGTCATTCATGATGGACAAGGCATTTTGGGTTaGGGAAGTCCAGAAAAGTCA +
Preference number: 4 (lower is better)
Translates to: AQVSHASRRGCPCVIHDGQGILG*GSPEKS
Trigger: TGACTTTTCTGGACTTCCTCAACCCAAAATGCCTTG...TCCATCATGAATGACACATGGGCATCCCCTTCGGCTAGCATGGCTGACCTGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR GCA 90 bp ATGAGGACATCAGACCTAACCTATTCATCTATACAGTACATTGAACCACACATCTGGAGACGCTGTCGCTaGGCTTCTGGCGGCCGAGCG +
Preference number: 4 (lower is better)
Translates to: MRTSDLTYSSIQYIEPHIWRRCR*ASGGRA
Trigger: CGCTCGGCCGCCAGAAGCGCAGCGACAGCGTCTCCA...GATGTGTGGTTCAATGTACTGTATAGATGAATAGGTTAGGTCTGATGTCCTCAT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR GCA 90 bp GTAGAAGCAGTTCCGAGTGATAGACAAAGCCTCTTAATAAGGAGGGGAGTTTCTGCCGCTTCTTCCTCTTaGCCAAGGTGGGGGATGCCT +
Preference number: 4 (lower is better)
Translates to: VEAVPSDRQSLLIRRGVSAASSS*PRWGMP
Trigger: AGGCATCCCCCACCTTGGGCAAGAGGAAGAAGCGGC...AGAAACTCCCCTCCTTATTAAGAGGCTTTGTCTATCACTCGGAACTGCTTCTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp ACTTCTCCAGAGGGGCAGACTTTAGCAGCATTACAGGGTTCAGCTGAAGGTCATGTGAAAACTGTCCTGTaGCGCCGCTTCTTCCTCTTG +
Preference number: 4 (lower is better)
Translates to: TSPEGQTLAALQGSAEGHVKTVL*RRFFLL
Trigger: CAAGAGGAAGAAGCGGCGGCACAGGACAGTTTTCAC...ATGACCTTCAGCTGAACCCTGTAATGCTGCTAAAGTCTGCCCCTCTGGAGAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR GCA 90 bp CAAGCTCTTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGGACCCTCAGTTTCTATaGAAAGGGAGCGTGTTGGCT +
Preference number: 4 (lower is better)
Translates to: QALVVPSAKGPSVSMQREDPQFL*KGSVLA
Trigger: AGCCAACACGCTCCCTTTGCATAGAAACTGAGGGTC...CTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAAGAGCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR GCA 90 bp GAACACACTGAACTTGGGAGACCAATGCTTTCAACTCCTAGGTTGTTGAATTCCTCCTTGCACATGGGGTaGCCTGCAGGGGGCAAGTCT +
Preference number: 4 (lower is better)
Translates to: EHTELGRPMLSTPRLLNSSLHMG*PAGGKS
Trigger: AGACTTGCCCCCTGCAGGGCACCCCATGTGCAAGGA...GGAATTCAACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp GACCTAGCTGTCATGACTGCAGGTTTATTCTCATCAGCTGGTAATAGATACGGATCCTTGCACATGGGGTaGCCTGCAGGGGGCAAGTCT +
Preference number: 4 (lower is better)
Translates to: DLAVMTAGLFSSAGNRYGSLHMG*PAGGKS
Trigger: AGACTTGCCCCCTGCAGGGCACCCCATGTGCAAGGA...TCCGTATCTATTACCAGCTGATGAGAATAAACCTGCAGTCATGACAGCTAGGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp GAACTTGGGAGACCAATGCTTTCAACTCCTAGGTTGTTGAATTCCTTGCACATGTGTCCTCATCGGACGTaGAGACGCTGTCGCTGCGCT +
Preference number: 4 (lower is better)
Translates to: ELGRPMLSTPRLLNSLHMCPHRT*RRCRCA
Trigger: AGCGCAGCGACAGCGTCTCCACGTCCGATGAGGACA...CATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp CACCTGTCACTAGGACCTAGCTGTCATGACTGCAGGTTTATTCTCATCAGCTGGTCCTCTTGCCCAAGGTaGGGGATGCCTTTAGGTCAT +
Preference number: 4 (lower is better)
Translates to: HLSLGPSCHDCRFILISWSSCPR*GMPLGH
Trigger: ATGACCTAAAGGCATCCCCCACCTTGGGCAAGAGGA...CCAGCTGATGAGAATAAACCTGCAGTCATGACAGCTAGGTCCTAGTGACAGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
3UTR CAA 72 bp ACTGAACTTGGGAGACCAATGCTTTCAACTCCTAGGTaGTTGAATTCCTTGCACATGGGGTGCCCTGCAGGG +
Preference number: 4 (lower is better)
Translates to: TELGRPMLSTPR*LNSLHMGCPAG
Trigger: CCCTGCAGGGCACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTTCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp CAGAACAATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATCTTGAGTAGACCAGCTGGTGAGCAGTaGAAACTGTCCTGTGCCGCC +
Preference number: 4 (lower is better)
Translates to: QNNALVWTVPFQQIILSRPAGEQ*KLSCAA
Trigger: GGCGGCACAGGACAGTTTTCACTGCTCACCAGCTGG...TCTACTCAAGATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATTGTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp AGGAAAATCGGCATGCTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCAAATCGGCATGCTTCCTaGGGCAGAACAATGCTACCT +
Preference number: 4 (lower is better)
Translates to: RKIGMLPEAEQCYLSTSPNRHAS*GRTMLP
Trigger: AGGTAGCATTGTTCTGCCTCAGGAAGCATGCCGATT...TGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp CTACCTGAGCACTTCTCCAGAGGGGCAGACTTTAGCAGCATTACAGGGTTCAGCAGTGATCATCAAGGATaGCACAGGAAAATCGGCATG +
Preference number: 4 (lower is better)
Translates to: LPEHFSRGADFSSITGFSSDHQG*HRKIGM
Trigger: CATGCCGATTTTCCTGTGTCATCCTTGATGATCACT...GCTGAACCCTGTAATGCTGCTAAAGTCTGCCCCTCTGGAGAAGTGCTCAGGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000444511.6
CDS-3UTR TCA 90 bp GCAAAGTCCAGTGAACGGGAGCCTCCAGGAGCAGAAGTTTGCACTCGTTCTTTACAACTCCTAGGTTGTTaGATTCCTTGCACATGGGGT +
Preference number: 4 (lower is better)
Translates to: AKSSEREPPGAEVCTRSLQLLGC*IPCTWG
Trigger: ACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTG...TAAAGAACGAGTGCAAACTTCTGCTCCTGGAGGCTCCCGTTCACTGGACTTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR TCA 90 bp GCAAGTCTGGTAGCAGTGATCATCAAGGATGACACAGGAAAATCGGCATGCTTCGACGACCACAGCTGGTaGCTTAGAGGGTCAGTAAGA +
Preference number: 4 (lower is better)
Translates to: ASLVAVIIKDDTGKSACFDDHSW*LRGSVR
Trigger: TCTTACTGACCCTCTAAGTCACCAGCTGTGGTCGTC...GAAGCATGCCGATTTTCCTGTGTCATCCTTGATGATCACTGCTACCAGACTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR GCA 90 bp CACACATCTCAAATGATGCCCAGCAGTGAAATCATTTTTGAACTTCGGATCCTCGCCGCTTCTTCCTCTTaGCCAAGGTGGGGGATGCCT +
Preference number: 4 (lower is better)
Translates to: HTSQMMPSSEIIFELRILAASSS*PRWGMP
Trigger: AGGCATCCCCCACCTTGGGCAAGAGGAAGAAGCGGC...GAGGATCCGAAGTTCAAAAATGATTTCACTGCTGGGCATCATTTGAGATGTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR GCA 90 bp CACACATCTCAAATGATGCCCAGCAGTGAAATCATTTTTGAACTTCGGATCCTCGCACCAGCCCCAGGGTaGACTTTCTTGGTCTCCTGC +
Preference number: 4 (lower is better)
Translates to: HTSQMMPSSEIIFELRILAPAPG*TFLVSC
Trigger: GCAGGAGACCAAGAAAGTGCACCCTGGGGCTGGTGC...GAGGATCCGAAGTTCAAAAATGATTTCACTGCTGGGCATCATTTGAGATGTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR GCA 90 bp ACTTTAGCAGCATTACAGGGTTCAGCTGAAGGTCATCAGGCACCACCACGGGGTGAAAAGTCAGAACAATaGCCTGGTATGGACAGTTCC +
Preference number: 4 (lower is better)
Translates to: TLAALQGSAEGHQAPPRGEKSEQ*PGMDSS
Trigger: GGAACTGTCCATACCAGGGCATTGTTCTGACTTTTC...ACCCCGTGGTGGTGCCTGATGACCTTCAGCTGAACCCTGTAATGCTGCTAAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR GCA 90 bp ATGCTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGACTGAAAAGTCAGAACAATaGCCTGGTATGGACAGTTCC +
Preference number: 4 (lower is better)
Translates to: MLPEAEQCYLSTSPEGQTEKSEQ*PGMDSS
Trigger: GGAACTGTCCATACCAGGGCATTGTTCTGACTTTTC...AGTCTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp AAGAGCAGCTTTCTGCACCTGTCACTAGGACCTAGCTGTCATGACTGCAGGTTTGCTAGCCGAAGGGGATaGCCATGTGTCATTCATGAT +
Preference number: 4 (lower is better)
Translates to: KSSFLHLSLGPSCHDCRFASRRG*PCVIHD
Trigger: ATCATGAATGACACATGGGCATCCCCTTCGGCTAGC...AAACCTGCAGTCATGACAGCTAGGTCCTAGTGACAGGTGCAGAAAGCTGCTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR GCA 90 bp GAAGCAGTTCCGAGTGATAGACAAAGCCTCTTAATAAGGAGGGGAGTTTCTGTAGCAAACTCACATGGGTaGCAAGCTGAGCACCCAGGC +
Preference number: 4 (lower is better)
Translates to: EAVPSDRQSLLIRRGVSVANSHG*QAEHPG
Trigger: GCCTGGGTGCTCAGCTTGGCACCCATGTGAGTTTGC...TACAGAAACTCCCCTCCTTATTAAGAGGCTTTGTCTATCACTCGGAACTGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR CCA 90 bp ACTTTAGCAGCATTACAGGGTTCAGCTGAAGGTCATCAGGCACCACCACGGGGTAACAATGCCCTGGTATaGACAGTTCCCTTTCAACAG +
Preference number: 4 (lower is better)
Translates to: TLAALQGSAEGHQAPPRGNNALV*TVPFQQ
Trigger: CTGTTGAAAGGGAACTGTCCATACCAGGGCATTGTT...ACCCCGTGGTGGTGCCTGATGACCTTCAGCTGAACCCTGTAATGCTGCTAAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR CCA 90 bp ATGCTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGACTAACAATGCCCTGGTATaGACAGTTCCCTTTCAACAG +
Preference number: 4 (lower is better)
Translates to: MLPEAEQCYLSTSPEGQTNNALV*TVPFQQ
Trigger: CTGTTGAAAGGGAACTGTCCATACCAGGGCATTGTT...AGTCTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp ATCAAGGATGACACAGGAAAATCGGCATGCTTCCTGAGGCAGAACAATGCTACCAACTCTTCCAGCTGGTaGGCAGTGAAAACTGTCCTG +
Preference number: 4 (lower is better)
Translates to: IKDDTGKSACFLRQNNATNSSSW*AVKTVL
Trigger: CAGGACAGTTTTCACTGCTCACCAGCTGGAAGAGTT...GGTAGCATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCTGTGTCATCCTTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp GTAGAAGCAGTTCCGAGTGATAGACAAAGCCTCTTAATAAGGAGGGGAGTTTCTCAGAACAATGCTACCTaGGCACTTCTCCAGAGGGGC +
Preference number: 4 (lower is better)
Translates to: VEAVPSDRQSLLIRRGVSQNNAT*ALLQRG
Trigger: GCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTG...AGAAACTCCCCTCCTTATTAAGAGGCTTTGTCTATCACTCGGAACTGCTTCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp ATCAAGGATGACACAGGAAAATCGGCATGCTTCCTGAGGCAGAACAATGCTACCAATCGGCATGCTTCCTaGGGCAGAACAATGCTACCT +
Preference number: 4 (lower is better)
Translates to: IKDDTGKSACFLRQNNATNRHAS*GRTMLP
Trigger: AGGTAGCATTGTTCTGCCTCAGGAAGCATGCCGATT...GGTAGCATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCTGTGTCATCCTTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp CTTGGGAGACCAATGCTTTCAACTCCTAGGTTGTTGAATTCCTTGCACATGGGGAATCGGCATGCTTCCTaGGGCAGAACAATGCTACCT +
Preference number: 4 (lower is better)
Translates to: LGRPMLSTPRLLNSLHMGNRHAS*GRTMLP
Trigger: AGGTAGCATTGTTCTGCCTCAGGAAGCATGCCGATT...CCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp AGGAAAATCGGCATGCTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCACAACTCCTAGGTTGTTaGATTCCTTGCACATGGGGT +
Preference number: 4 (lower is better)
Translates to: RKIGMLPEAEQCYLSTSPQLLGC*IPCTWG
Trigger: ACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTG...TGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp GCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGACTTTAGCAGCATTACGGAAAAGAACACACTaGACTTGGGAGACCAATGCT +
Preference number: 4 (lower is better)
Translates to: AEQCYLSTSPEGQTLAALRKRTH*TWETNA
Trigger: AGCATTGGTCTCCCAAGTTCAGTGTGTTCTTTTCCG...TAATGCTGCTAAAGTCTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp ATGCTTTCAACTCCTAGGTTGTTGAATTCCTTGCACATGGGGTGCCCTGCAGGGACAGGAAAATCGGCATaGTTCCTGAGGCAGAACAAT +
Preference number: 4 (lower is better)
Translates to: MLSTPRLLNSLHMGCPAGTGKSA*FLRQNN
Trigger: ATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCTGT...CCCTGCAGGGCACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp CAGAACAATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATCTTGAGTAGAAGTCCCGGCCGGTCATaGTTCCTTAGCAAGCAAGGC +
Preference number: 4 (lower is better)
Translates to: QNNALVWTVPFQQIILSRSPGRS*FLSKQG
Trigger: GCCTTGCTTGCTAAGGAACCATGACCGGCCGGGACT...TCTACTCAAGATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATTGTTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp AAGCTCTTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGCATGACACGTTCTCTGTaGTATCTTTGGAGCGGAGAA +
Preference number: 4 (lower is better)
Translates to: KLLWCLQLRDPQFLCKGSMTRSL*YLWSGE
Trigger: TTCTCCGCTCCAAAGATACCACAGAGAACGTGTCAT...GCTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAAGAGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR CCA 90 bp CTCATCTGTCCTCTTAAAGCAAGTGGCATTGCATTTTATCTTGACATTGTCAGAGTTGAGCACGGAGTCTaGCAGCGGGATGCAGTGGCG +
Preference number: 4 (lower is better)
Translates to: LICPLKASGIAFYLDIVRVEHGV*QRDAVA
Trigger: CGCCACTGCATCCCGCTGCCAGACTCCGTGCTCAAC...TCTGACAATGTCAAGATAAAATGCAATGCCACTTGCTTTAAGAGGACAGATGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CCA 90 bp CTCATCTGTCCTCTTAAAGCAAGTGGCATTGCATTTTATCTTGACATTGTCAGAGCCCCTCCAGTGCCGTaGAGTTGGAGCCTCCTTGAG +
Preference number: 4 (lower is better)
Translates to: LICPLKASGIAFYLDIVRAPPVP*SWSLLE
Trigger: CTCAAGGAGGCTCCAACTCCACGGCACTGGAGGGGC...TCTGACAATGTCAAGATAAAATGCAATGCCACTTGCTTTAAGAGGACAGATGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CCA 90 bp CTGGTAGCAGTGATCATCAAGGATGACACAGGAAAATCGGCATGCTTCCTGAGGGTCAGAACAATGCCCTaGTATGGACAGTTCCCTTTC +
Preference number: 4 (lower is better)
Translates to: LVAVIIKDDTGKSACFLRVRTMP*YGQFPF
Trigger: GAAAGGGAACTGTCCATACCAGGGCATTGTTCTGAC...CCTCAGGAAGCATGCCGATTTTCCTGTGTCATCCTTGATGATCACTGCTACCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp AAGAGCAGCTTTCTGCACCTGTCACTAGGACCTAGCTGTCATGACTGCAGGTTTGTCAGAACAATGCCCTaGTATGGACAGTTCCCTTTC +
Preference number: 4 (lower is better)
Translates to: KSSFLHLSLGPSCHDCRFVRTMP*YGQFPF
Trigger: GAAAGGGAACTGTCCATACCAGGGCATTGTTCTGAC...AAACCTGCAGTCATGACAGCTAGGTCCTAGTGACAGGTGCAGAAAGCTGCTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp CACCTGTCACTAGGACCTAGCTGTCATGACTGCAGGTTTATTCTCATCAGCTGGGTCAGAACAATGCCCTaGTATGGACAGTTCCCTTTC +
Preference number: 4 (lower is better)
Translates to: HLSLGPSCHDCRFILISWVRTMP*YGQFPF
Trigger: GAAAGGGAACTGTCCATACCAGGGCATTGTTCTGAC...CCAGCTGATGAGAATAAACCTGCAGTCATGACAGCTAGGTCCTAGTGACAGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp CTCATCTGTCCTCTTAAAGCAAGTGGCATTGCATTTTATCTTGACATTGTCAGACCAGCTGGTGAGCAGTaGAAACTGTCCTGTGCCGCC +
Preference number: 4 (lower is better)
Translates to: LICPLKASGIAFYLDIVRPAGEQ*KLSCAA
Trigger: GGCGGCACAGGACAGTTTTCACTGCTCACCAGCTGG...TCTGACAATGTCAAGATAAAATGCAATGCCACTTGCTTTAAGAGGACAGATGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR TCA 90 bp ACGGAAAAGAACACACTGAACTTGGGAGACCAATGCTTTCAACTCCTAGGTTGTATTACAGGGTTCAGCTaGAGGTCATCAGGCACCACC +
Preference number: 4 (lower is better)
Translates to: TEKNTLNLGDQCFQLLGCITGFS*RSSGTT
Trigger: GGTGGTGCCTGATGACCTTCAGCTGAACCCTGTAAT...ACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTTCTTTTCCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp CACCTGTCACTAGGACCTAGCTGTCATGACTGCAGGTTTATTCTCATCAGCTGGAGTGATCATCAAGGATaGCACAGGAAAATCGGCATG +
Preference number: 4 (lower is better)
Translates to: HLSLGPSCHDCRFILISWSDHQG*HRKIGM
Trigger: CATGCCGATTTTCCTGTGTCATCCTTGATGATCACT...CCAGCTGATGAGAATAAACCTGCAGTCATGACAGCTAGGTCCTAGTGACAGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp CTTGGGAGACCAATGCTTTCAACTCCTAGGTTGTTGAATTCCTTGCACATGGGGCGGAAAAGAACACACTaGACTTGGGAGACCAATGCT +
Preference number: 4 (lower is better)
Translates to: LGRPMLSTPRLLNSLHMGRKRTH*TWETNA
Trigger: AGCATTGGTCTCCCAAGTTCAGTGTGTTCTTTTCCG...CCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp AAGAGCAGCTTTCTGCACCTGTCACTAGGACCTAGCTGTCATGACTGCAGGTTTCAAGGCATTTTGGGTTaGGGAAGTCCAGAAAAGTCA +
Preference number: 4 (lower is better)
Translates to: KSSFLHLSLGPSCHDCRFQGILG*GSPEKS
Trigger: TGACTTTTCTGGACTTCCTCAACCCAAAATGCCTTG...AAACCTGCAGTCATGACAGCTAGGTCCTAGTGACAGGTGCAGAAAGCTGCTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp AAAGAACACACTGAACTTGGGAGACCAATGCTTTCAACTCCTAGGTTGTTGAATAGCCTGGAGACAGAGTaGGACCCTGCCCTAACACTC +
Preference number: 4 (lower is better)
Translates to: KEHTELGRPMLSTPRLLNSLETE*DPALTL
Trigger: GAGTGTTAGGGCAGGGTCTCACTCTGTCTCCAGGCT...ATTCAACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR TCA 90 bp TTTCTGCACCTGTCACTAGGACCTAGCTGTCATGACTGCAGGTTTATTCTCATCCCCATGTGTCATTCATaGTGGAAGGAGAGGAGAAGG +
Preference number: 4 (lower is better)
Translates to: FLHLSLGPSCHDCRFILIPMCHS*WKERRR
Trigger: CCTTCTCCTCTCCTTCCATCATGAATGACACATGGG...GATGAGAATAAACCTGCAGTCATGACAGCTAGGTCCTAGTGACAGGTGCAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR TCA 90 bp AGGAAAATCGGCATGCTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCACAACAGATTCTGCAATaGCAGGAAGGATGGGTAATG +
Preference number: 4 (lower is better)
Translates to: RKIGMLPEAEQCYLSTSPQQILQ*QEGWVM
Trigger: CATTACCCATCCTTCCTGTCATTGCAGAATCTGTTG...TGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR GCA 90 bp GCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGACTTTAGCAGCATTAGAAAAGTCAGAACAATaGCCTGGTATGGACAGTTCC +
Preference number: 4 (lower is better)
Translates to: AEQCYLSTSPEGQTLAALEKSEQ*PGMDSS
Trigger: GGAACTGTCCATACCAGGGCATTGTTCTGACTTTTC...TAATGCTGCTAAAGTCTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp CCCAGCAGTGAAATCATTTTTGAACTTCGGATCCTCCCTGCTCAAGCTACAAAATTCCTGTCTTCAGACTaGCTGTCCTCATCGGACGTG +
Preference number: 4 (lower is better)
Translates to: PSSEIIFELRILPAQATKFLSSD*LSSSDV
Trigger: CACGTCCGATGAGGACAGCCAGTCTGAAGACAGGAA...TTTTGTAGCTTGAGCAGGGAGGATCCGAAGTTCAAAAATGATTTCACTGCTGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CCA 90 bp GAAGCAGTTCCGAGTGATAGACAAAGCCTCTTAATAAGGAGGGGAGTTTCTGTATTCCTGTCTTCAGACTaGCTGTCCTCATCGGACGTG +
Preference number: 4 (lower is better)
Translates to: EAVPSDRQSLLIRRGVSVFLSSD*LSSSDV
Trigger: CACGTCCGATGAGGACAGCCAGTCTGAAGACAGGAA...TACAGAAACTCCCCTCCTTATTAAGAGGCTTTGTCTATCACTCGGAACTGCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp CCCAGCAGTGAAATCATTTTTGAACTTCGGATCCTCCCTGCTCAAGCTACAAAATCCTCTTGCCCAAGGTaGGGGATGCCTTTAGGTCAT +
Preference number: 4 (lower is better)
Translates to: PSSEIIFELRILPAQATKSSCPR*GMPLGH
Trigger: ATGACCTAAAGGCATCCCCCACCTTGGGCAAGAGGA...TTTTGTAGCTTGAGCAGGGAGGATCCGAAGTTCAAAAATGATTTCACTGCTGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CCA 90 bp GCAGTTCCGAGTGATAGACAAAGCCTCTTAATAAGGAGGGGAGTTTCTGTAAGATCCTCTTGCCCAAGGTaGGGGATGCCTTTAGGTCAT +
Preference number: 4 (lower is better)
Translates to: AVPSDRQSLLIRRGVSVRSSCPR*GMPLGH
Trigger: ATGACCTAAAGGCATCCCCCACCTTGGGCAAGAGGA...TCTTACAGAAACTCCCCTCCTTATTAAGAGGCTTTGTCTATCACTCGGAACTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp GTTCCGAGTGATAGACAAAGCCTCTTAATAAGGAGGGGAGTTTCTGTAAGAGCATCCTCTTGCCCAAGGTaGGGGATGCCTTTAGGTCAT +
Preference number: 4 (lower is better)
Translates to: VPSDRQSLLIRRGVSVRASSCPR*GMPLGH
Trigger: ATGACCTAAAGGCATCCCCCACCTTGGGCAAGAGGA...TGCTCTTACAGAAACTCCCCTCCTTATTAAGAGGCTTTGTCTATCACTCGGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CCA 90 bp ACTTCTCCAGAGGGGCAGACTTTAGCAGCATTACAGGGTTCAGCTGAAGGTCATAACAATGCCCTGGTATaGACAGTTCCCTTTCAACAG +
Preference number: 4 (lower is better)
Translates to: TSPEGQTLAALQGSAEGHNNALV*TVPFQQ
Trigger: CTGTTGAAAGGGAACTGTCCATACCAGGGCATTGTT...ATGACCTTCAGCTGAACCCTGTAATGCTGCTAAAGTCTGCCCCTCTGGAGAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR TCA 90 bp GCAGTTCCGAGTGATAGACAAAGCCTCTTAATAAGGAGGGGAGTTTCTGTAAGAAACTCTTCCAGCTGGTaGGCAGTGAAAACTGTCCTG +
Preference number: 4 (lower is better)
Translates to: AVPSDRQSLLIRRGVSVRNSSSW*AVKTVL
Trigger: CAGGACAGTTTTCACTGCTCACCAGCTGGAAGAGTT...TCTTACAGAAACTCCCCTCCTTATTAAGAGGCTTTGTCTATCACTCGGAACTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp AATGCCAGTGAGGAATATGCACATTTTCAGCCTTTGACAGTGGGACCTGTGGGTACCAAAAGCCTGGTCTaGCCTAAAAACACTGTTTCC +
Preference number: 4 (lower is better)
Translates to: NASEEYAHFQPLTVGPVGTKSLV*PKNTVS
Trigger: GGAAACAGTGTTTTTAGGTCAGACCAGGCTTTTGGT...ACCCACAGGTCCCACTGTCAAAGGCTGAAAATGTGCATATTCCTCACTGGCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR TCA 90 bp AATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATCTTGAGTAGAAGCAGTATTACAGGGTTCAGCTaGAGGTCATCAGGCACCACC +
Preference number: 4 (lower is better)
Translates to: NALVWTVPFQQIILSRSSITGFS*RSSGTT
Trigger: GGTGGTGCCTGATGACCTTCAGCTGAACCCTGTAAT...ACTGCTTCTACTCAAGATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp AGTTTCTGTAAGAGCAGCTTTCTGCACCTGTCACTAGGACCTAGCTGTCATGACAGTGATCATCAAGGATaGCACAGGAAAATCGGCATG +
Preference number: 4 (lower is better)
Translates to: SFCKSSFLHLSLGPSCHDSDHQG*HRKIGM
Trigger: CATGCCGATTTTCCTGTGTCATCCTTGATGATCACT...GTCATGACAGCTAGGTCCTAGTGACAGGTGCAGAAAGCTGCTCTTACAGAAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp CACACATCTCAAATGATGCCCAGCAGTGAAATCATTTTTGAACTTCGGATCCTCGTGAAAACTGTCCTGTaGCGCCGCTTCTTCCTCTTG +
Preference number: 4 (lower is better)
Translates to: HTSQMMPSSEIIFELRILVKTVL*RRFFLL
Trigger: CAAGAGGAAGAAGCGGCGGCACAGGACAGTTTTCAC...GAGGATCCGAAGTTCAAAAATGATTTCACTGCTGGGCATCATTTGAGATGTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR GCA 90 bp CCAGAAAAGTCAGAACAATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATGTGAAAACTGTCCTGTaGCGCCGCTTCTTCCTCTTG +
Preference number: 4 (lower is better)
Translates to: PEKSEQCPGMDSSLSTDNVKTVL*RRFFLL
Trigger: CAAGAGGAAGAAGCGGCGGCACAGGACAGTTTTCAC...ATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATTGTTCTGACTTTTCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp AATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATCTTGAGTAGAAGCAGTGTGAAAACTGTCCTGTaGCGCCGCTTCTTCCTCTTG +
Preference number: 4 (lower is better)
Translates to: NALVWTVPFQQIILSRSSVKTVL*RRFFLL
Trigger: CAAGAGGAAGAAGCGGCGGCACAGGACAGTTTTCAC...ACTGCTTCTACTCAAGATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp AATGCCAGTGAGGAATATGCACATTTTCAGCCTTTGACAGTGGGACCTGTGGGTACTTCGGATCCTCCCTaGTCAAGCTACAAAAGAGAA +
Preference number: 4 (lower is better)
Translates to: NASEEYAHFQPLTVGPVGTSDPP*SSYKRE
Trigger: TTCTCTTTTGTAGCTTGAGCAGGGAGGATCCGAAGT...ACCCACAGGTCCCACTGTCAAAGGCTGAAAATGTGCATATTCCTCACTGGCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CCA 90 bp GAAGGATGGGTAATGGACAATTATGTGAACAAACACATTTCAAAGCCCGGGTTGTTCCTGTCTTCAGACTaGCTGTCCTCATCGGACGTG +
Preference number: 4 (lower is better)
Translates to: EGWVMDNYVNKHISKPGLFLSSD*LSSSDV
Trigger: CACGTCCGATGAGGACAGCCAGTCTGAAGACAGGAA...CAACCCGGGCTTTGAAATGTGTTTGTTCACATAATTGTCCATTACCCATCCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR CCA 90 bp AAATCATTTTTGAACTTCGGATCCTCCCTGCTCAAGCTACAAAAGAGAATCAAACAGGGTGCACTTTCTTaGTCTCCTGCCGGGCAGAGC +
Preference number: 4 (lower is better)
Translates to: KSFLNFGSSLLKLQKRIKQGALS*SPAGQS
Trigger: GCTCTGCCCGGCAGGAGACCAAGAAAGTGCACCCTG...TTTGATTCTCTTTTGTAGCTTGAGCAGGGAGGATCCGAAGTTCAAAAATGATTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CCA 90 bp TTCATTCATGTGTCTGTATGGAGTCTTCACTATGATGATATCAGATTCTTCTGGCCAGTGCCGTGGAGTTaGAGCCTCCTTGAGCACCAG +
Preference number: 4 (lower is better)
Translates to: FIHVSVWSLHYDDIRFFWPVPWS*SLLEHQ
Trigger: CTGGTGCTCAAGGAGGCTCCAACTCCACGGCACTGG...CCAGAAGAATCTGATATCATCATAGTGAAGACTCCATACAGACACATGAATGAA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376709.9
3UTR CAA 72 bp GACAATTATGTGAACAAACACATTTCAAAGCCCGGGTaGAGATCAGGGGTCAAAGAGGAGACGACCACAGCT +
Preference number: 4 (lower is better)
Translates to: DNYVNKHISKPG*RSGVKEETTTA
Trigger: AGCTGTGGTCGTCTCCTCTTTGACCCCTGATCTCAACCCGGGCTTTGAAATGTGTTTGTTCACATAATTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR TCA 90 bp CCAGAAAAGTCAGAACAATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATAATCGGCATGCTTCCTaGGGCAGAACAATGCTACCT +
Preference number: 4 (lower is better)
Translates to: PEKSEQCPGMDSSLSTDNNRHAS*GRTMLP
Trigger: AGGTAGCATTGTTCTGCCTCAGGAAGCATGCCGATT...ATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATTGTTCTGACTTTTCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp GCAGTTCCGAGTGATAGACAAAGCCTCTTAATAAGGAGGGGAGTTTCTGTAAGACAACTCCTAGGTTGTTaGATTCCTTGCACATGGGGT +
Preference number: 4 (lower is better)
Translates to: AVPSDRQSLLIRRGVSVRQLLGC*IPCTWG
Trigger: ACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTG...TCTTACAGAAACTCCCCTCCTTATTAAGAGGCTTTGTCTATCACTCGGAACTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp GATACGGAAAAGAACACACTGAACTTGGGAGACCAATGCTTTCAACTCCTAGGTCAACTCCTAGGTTGTTaGATTCCTTGCACATGGGGT +
Preference number: 4 (lower is better)
Translates to: DTEKNTLNLGDQCFQLLGQLLGC*IPCTWG
Trigger: ACCCCATGTGCAAGGAATTCAACAACCTAGGAGTTG...ACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTTCTTTTCCGTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp CTGGTAGCAGTGATCATCAAGGATGACACAGGAAAATCGGCATGCTTCCTGAGGTTTAAAATTTCAGGCTaGAAACTCACATGGGTGCCA +
Preference number: 4 (lower is better)
Translates to: LVAVIIKDDTGKSACFLRFKISG*KLTWVP
Trigger: TGGCACCCATGTGAGTTTGCAGCCTGAAATTTTAAA...CCTCAGGAAGCATGCCGATTTTCCTGTGTCATCCTTGATGATCACTGCTACCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR CCA 90 bp AAATCATTTTTGAACTTCGGATCCTCCCTGCTCAAGCTACAAAAGAGAATCAAAAGTCCCGGCCGGTCATaGTTCCTTAGCAAGCAAGGC +
Preference number: 4 (lower is better)
Translates to: KSFLNFGSSLLKLQKRIKSPGRS*FLSKQG
Trigger: GCCTTGCTTGCTAAGGAACCATGACCGGCCGGGACT...TTTGATTCTCTTTTGTAGCTTGAGCAGGGAGGATCCGAAGTTCAAAAATGATTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR TCA 90 bp AAAGAACACACTGAACTTGGGAGACCAATGCTTTCAACTCCTAGGTTGTTGAATAACTCTTCCAGCTGGTaGGCAGTGAAAACTGTCCTG +
Preference number: 4 (lower is better)
Translates to: KEHTELGRPMLSTPRLLNNSSSW*AVKTVL
Trigger: CAGGACAGTTTTCACTGCTCACCAGCTGGAAGAGTT...ATTCAACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp GTTCCGAGTGATAGACAAAGCCTCTTAATAAGGAGGGGAGTTTCTGTAAGAGCACAAGGCATTTTGGGTTaGGGAAGTCCAGAAAAGTCA +
Preference number: 4 (lower is better)
Translates to: VPSDRQSLLIRRGVSVRAQGILG*GSPEKS
Trigger: TGACTTTTCTGGACTTCCTCAACCCAAAATGCCTTG...TGCTCTTACAGAAACTCCCCTCCTTATTAAGAGGCTTTGTCTATCACTCGGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp AAATCATTTTTGAACTTCGGATCCTCCCTGCTCAAGCTACAAAAGAGAATCAAAGTGGGCCTCGCTGAATaGCTTCTCCAACTCTTCCAG +
Preference number: 4 (lower is better)
Translates to: KSFLNFGSSLLKLQKRIKVGLAE*LLQLFQ
Trigger: CTGGAAGAGTTGGAGAAGGCATTCAGCGAGGCCCAC...TTTGATTCTCTTTTGTAGCTTGAGCAGGGAGGATCCGAAGTTCAAAAATGATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR GCA 90 bp GTTCCGAGTGATAGACAAAGCCTCTTAATAAGGAGGGGAGTTTCTGTAAGAGCAACAGGAAAATCGGCATaGTTCCTGAGGCAGAACAAT +
Preference number: 4 (lower is better)
Translates to: VPSDRQSLLIRRGVSVRATGKSA*FLRQNN
Trigger: ATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCTGT...TGCTCTTACAGAAACTCCCCTCCTTATTAAGAGGCTTTGTCTATCACTCGGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp GATACGGAAAAGAACACACTGAACTTGGGAGACCAATGCTTTCAACTCCTAGGTACAGGAAAATCGGCATaGTTCCTGAGGCAGAACAAT +
Preference number: 4 (lower is better)
Translates to: DTEKNTLNLGDQCFQLLGTGKSA*FLRQNN
Trigger: ATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCTGT...ACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTTCTTTTCCGTATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR GCA 90 bp GTTCCGAGTGATAGACAAAGCCTCTTAATAAGGAGGGGAGTTTCTGTAAGAGCAGAAAAGTCAGAACAATaGCCTGGTATGGACAGTTCC +
Preference number: 4 (lower is better)
Translates to: VPSDRQSLLIRRGVSVRAEKSEQ*PGMDSS
Trigger: GGAACTGTCCATACCAGGGCATTGTTCTGACTTTTC...TGCTCTTACAGAAACTCCCCTCCTTATTAAGAGGCTTTGTCTATCACTCGGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR TCA 90 bp CTCATCTGTCCTCTTAAAGCAAGTGGCATTGCATTTTATCTTGACATTGTCAGAAACTCTTCCAGCTGGTaGGCAGTGAAAACTGTCCTG +
Preference number: 4 (lower is better)
Translates to: LICPLKASGIAFYLDIVRNSSSW*AVKTVL
Trigger: CAGGACAGTTTTCACTGCTCACCAGCTGGAAGAGTT...TCTGACAATGTCAAGATAAAATGCAATGCCACTTGCTTTAAGAGGACAGATGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR TCA 90 bp AAATCATTTTTGAACTTCGGATCCTCCCTGCTCAAGCTACAAAAGAGAATCAAACACATTTTCAGCCTTTaGCAGTGGGACCTGTGGGTC +
Preference number: 4 (lower is better)
Translates to: KSFLNFGSSLLKLQKRIKHIFSL*QWDLWV
Trigger: GACCCACAGGTCCCACTGTCAAAGGCTGAAAATGTG...TTTGATTCTCTTTTGTAGCTTGAGCAGGGAGGATCCGAAGTTCAAAAATGATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR TCA 90 bp AATGCCAGTGAGGAATATGCACATTTTCAGCCTTTGACAGTGGGACCTGTGGGTTTTGGAAAATGCCAGTaGGGAATATGCACATTTTCA +
Preference number: 4 (lower is better)
Translates to: NASEEYAHFQPLTVGPVGFGKCQ*GICTFS
Trigger: TGAAAATGTGCATATTCCTCACTGGCATTTTCCAAA...ACCCACAGGTCCCACTGTCAAAGGCTGAAAATGTGCATATTCCTCACTGGCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR GCA 90 bp ATGAGGACATCAGACCTAACCTATTCATCTATACAGTACATTGAACCACACATCAGAGCCCCAGAGTCCTaGCAACTTATCTTCACTTCC +
Preference number: 4 (lower is better)
Translates to: MRTSDLTYSSIQYIEPHIRAPES*QLIFTS
Trigger: GGAAGTGAAGATAAGTTGGCAGGACTCTGGGGCTCT...GATGTGTGGTTCAATGTACTGTATAGATGAATAGGTTAGGTCTGATGTCCTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CCA 90 bp AAATCATTTTTGAACTTCGGATCCTCCCTGCTCAAGCTACAAAAGAGAATCAAAGAACCTTCTTTGAAGTaGTCAGAGCCCCAGAGTCCT +
Preference number: 4 (lower is better)
Translates to: KSFLNFGSSLLKLQKRIKEPSLK*SEPQSP
Trigger: AGGACTCTGGGGCTCTGACCACTTCAAAGAAGGTTC...TTTGATTCTCTTTTGTAGCTTGAGCAGGGAGGATCCGAAGTTCAAAAATGATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CCA 90 bp ATGAGGACATCAGACCTAACCTATTCATCTATACAGTACATTGAACCACACATCGATCCTGACTCACTCTaGCTAGAACCTTCTTTGAAG +
Preference number: 4 (lower is better)
Translates to: MRTSDLTYSSIQYIEPHIDPDSL*LEPSLK
Trigger: CTTCAAAGAAGGTTCTAGCCAGAGTGAGTCAGGATC...GATGTGTGGTTCAATGTACTGTATAGATGAATAGGTTAGGTCTGATGTCCTCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CCA 90 bp ATGAGGACATCAGACCTAACCTATTCATCTATACAGTACATTGAACCACACATCGAAAGACCAAAAGCCTaGTCTGACCTAAAAACACTG +
Preference number: 4 (lower is better)
Translates to: MRTSDLTYSSIQYIEPHIERPKA*SDLKTL
Trigger: CAGTGTTTTTAGGTCAGACCAGGCTTTTGGTCTTTC...GATGTGTGGTTCAATGTACTGTATAGATGAATAGGTTAGGTCTGATGTCCTCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR TCA 90 bp AAATCATTTTTGAACTTCGGATCCTCCCTGCTCAAGCTACAAAAGAGAATCAAAGAGTATGGGTTTCTTTaGATTCCAATATGCATAGCC +
Preference number: 4 (lower is better)
Translates to: KSFLNFGSSLLKLQKRIKEYGFL*IPICIA
Trigger: GGCTATGCATATTGGAATTCAAAGAAACCCATACTC...TTTGATTCTCTTTTGTAGCTTGAGCAGGGAGGATCCGAAGTTCAAAAATGATTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376709.9
3UTR CAA 72 bp CTAGGTCACTCATCTGTCCTCTTAAAGCAAGTGGCATaGCATTTTATCTTGACATTGTCAGAAGAAAATCAA +
Preference number: 4 (lower is better)
Translates to: LGHSSVLLKQVA*HFILTLSEENQ
Trigger: TTGATTTTCTTCTGACAATGTCAAGATAAAATGCAATGCCACTTGCTTTAAGAGGACAGATGAGTGACCTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CCA 90 bp CTCATCTGTCCTCTTAAAGCAAGTGGCATTGCATTTTATCTTGACATTGTCAGAATTCATGTGTCTGTATaGAGTCTTCACTATGATGAT +
Preference number: 4 (lower is better)
Translates to: LICPLKASGIAFYLDIVRIHVSV*SLHYDD
Trigger: ATCATCATAGTGAAGACTCCATACAGACACATGAAT...TCTGACAATGTCAAGATAAAATGCAATGCCACTTGCTTTAAGAGGACAGATGAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CCA 90 bp AAATCATTTTTGAACTTCGGATCCTCCCTGCTCAAGCTACAAAAGAGAATCAAAGAAACGACTAGAGTATaGGTTTCTTTGAATTCCAAT +
Preference number: 4 (lower is better)
Translates to: KSFLNFGSSLLKLQKRIKETTRV*VSLNSN
Trigger: ATTGGAATTCAAAGAAACCCATACTCTAGTCGTTTC...TTTGATTCTCTTTTGTAGCTTGAGCAGGGAGGATCCGAAGTTCAAAAATGATTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS GCA 90 bp CGCCAGGCTGGAGCCGTCAAGCCCCGGGCCCGGGCACGGCGCGACTaGCGGACCCTCGCAGCCAGATCCCTGTCCTGGGCCAGCGGGCGC +
Preference number: 5 (lower is better)
Translates to: RQAGAVKPRARARRD*RTLAARSLSWASGR
Trigger: GCGCCCGCTGGCCCAGGACAGGGATCTGGCTGCGAGGGTCCGGCAGTCGCGCCGTGCCCGGGCCCGGGGCTTGACGGCTCCAGCCTGGCG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000376707.4
ENST00000376709.9
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS CCA 90 bp CACAGAGGAGGCCGAGTCCCAGCGGTAGGGCCCCACGCGCCAGGCTaGAGCCGTCAAGCCCCGGGCCCGGGCACGGCGCGACTGCCGGAC +
Preference number: 5 (lower is better)
Translates to: HRGGRVPAVGPHAPG*SRQAPGPGTARLPD
Trigger: GTCCGGCAGTCGCGCCGTGCCCGGGCCCGGGGCTTGACGGCTCCAGCCTGGCGCGTGGGGCCCTACCGCTGGGACTCGGCCTCCTCTGTG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000376707.4
ENST00000376709.9
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS TCA 90 bp CCACCACGGGGTCTGGGGAGCCTGTGTGTCTCCTGCAAAGTCCAGTaGACGGGAGCCTCCAGGAGCAGAAGTTTGCACCAGGAGCCAGGG +
Preference number: 5 (lower is better)
Translates to: PPRGLGSLCVSCKVQ*TGASRSRSLHQEPG
Trigger: CCCTGGCTCCTGGTGCAAACTTCTGCTCCTGGAGGCTCCCGTTCACTGGACTTTGCAGGAGACACACAGGCTCCCCAGACCCCGTGGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR CAA 90 bp GCACAGGTCAGCCATGCTAGCCGAAGGGGATGCCCATGTGTCATTCATGATGGACAGCGCTTCTCCCGCTaGCGCCATTTGGCCCTGCGG +
Preference number: 5 (lower is better)
Translates to: AQVSHASRRGCPCVIHDGQRFSR*RHLALR
Trigger: CCGCAGGGCCAAATGGCGCAAGCGGGAGAAGCGCTG...TCCATCATGAATGACACATGGGCATCCCCTTCGGCTAGCATGGCTGACCTGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS TCA 90 bp CCACCACGGGGTCTGGGGAGCCTGTGTGTCTCCTGCAAAGTCCAGTaGACGGGAGCCTCCAGGAGCAGAAGTTTGCACTGTATCCGGTCT +
Preference number: 5 (lower is better)
Translates to: PPRGLGSLCVSCKVQ*TGASRSRSLHCIRS
Trigger: AGACCGGATACAGTGCAAACTTCTGCTCCTGGAGGCTCCCGTTCACTGGACTTTGCAGGAGACACACAGGCTCCCCAGACCCCGTGGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000444511.6
CDS-3UTR CAA 90 bp GTGTCTCCTGCAAAGTCCAGTGAACGGGAGCCTCCAGGAGCAGAAGTTTGCACTCGCCGCTTCTTCCTCTaGCCCAAGGTGGGGGATGCC +
Preference number: 5 (lower is better)
Translates to: VSPAKSSEREPPGAEVCTRRFFL*PKVGDA
Trigger: GGCATCCCCCACCTTGGGCAAGAGGAAGAAGCGGCG...AGTGCAAACTTCTGCTCCTGGAGGCTCCCGTTCACTGGACTTTGCAGGAGACAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR CAA 90 bp GGAGCAGAAGTTTGCACTCGTTCTTTAAGGGTGTTTTCCCGATCCTTGGCTCTGCCGCCCTCGGCGGAGTaGAGCACGGAGTCTGGCAGC +
Preference number: 5 (lower is better)
Translates to: GAEVCTRSLRVFSRSLALPPSAE*STESGS
Trigger: GCTGCCAGACTCCGTGCTCAACTCCGCCGAGGGCGG...CAGAGCCAAGGATCGGGAAAACACCCTTAAAGAACGAGTGCAAACTTCTGCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000409285.6
CDS-3UTR CAA 90 bp CAAGCTCTTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGCGCCGCTTCTTCCTCTaGCCCAAGGTGGGGGATGCC +
Preference number: 5 (lower is better)
Translates to: QALVVPSAKGPSVSMQRERRFFL*PKVGDA
Trigger: GGCATCCCCCACCTTGGGCAAGAGGAAGAAGCGGCG...CTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAAGAGCTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR CAA 90 bp GGCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGACTTTAGCAGCATTCGCCGCTTCTTCCTCTaGCCCAAGGTGGGGGATGCC +
Preference number: 5 (lower is better)
Translates to: GRTMLPEHFSRGADFSSIRRFFL*PKVGDA
Trigger: GGCATCCCCCACCTTGGGCAAGAGGAAGAAGCGGCG...AATGCTGCTAAAGTCTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS GCA 90 bp TCTCATCCATTTGACAATCGGCTTAGCAGGTTCACTTCATTTCTCTaGAGCCCAATGTCTCACCCTCCAGGAGCCAGGGCGCGCAGGAGC +
Preference number: 5 (lower is better)
Translates to: SHPFDNRLSRFTSFL*SPMSHPPGARARRS
Trigger: GCTCCTGCGCGCCCTGGCTCCTGGAGGGTGAGACATTGGGCTGCAGAGAAATGAAGTGAACCTGCTAAGCCGATTGTCAAATGGATGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000409285.6
CDS GCA 90 bp GGCAAGCTCTTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATaGAAAGGGAGCGTGTTGGCTATAGAGAAGGGACTGCTGATTGGC +
Preference number: 5 (lower is better)
Translates to: GKLLWCLQLRDPQFL*KGSVLAIEKGLLIG
Trigger: GCCAATCAGCAGTCCCTTCTCTATAGCCAACACGCTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAAGAGCTTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS CCA 90 bp TCAGGGCTCACTTTATCTGAGCCTCTCTGTGATCCTGACTCACTCTaGCTAGAACCTTCTTTGAAGTGGTCAGAGCCCCAGAGTCCTGCC +
Preference number: 5 (lower is better)
Translates to: SGLTLSEPLCDPDSL*LEPSLKWSEPQSPA
Trigger: GGCAGGACTCTGGGGCTCTGACCACTTCAAAGAAGGTTCTAGCCAGAGTGAGTCAGGATCACAGAGAGGCTCAGATAAAGTGAGCCCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000376709.9
ENST00000557285.1
CDS-3UTR CAA 90 bp GAACACACTGAACTTGGGAGACCAATGCTTTCAACTCCTAGGTTGTTGAATTCCCGCCGCTTCTTCCTCTaGCCCAAGGTGGGGGATGCC +
Preference number: 5 (lower is better)
Translates to: EHTELGRPMLSTPRLLNSRRFFL*PKVGDA
Trigger: GGCATCCCCCACCTTGGGCAAGAGGAAGAAGCGGCG...GGAATTCAACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CAA 90 bp AGGGGCAAGCTCTTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAACATAGGGGCAAGCTCTaGTGGTGCCTTCAGCTAAGG +
Preference number: 5 (lower is better)
Translates to: RGKLLWCLQLRDPQFLCKHRGKL*WCLQLR
Trigger: CCTTAGCTGAAGGCACCACAAGAGCTTGCCCCTATG...TTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAAGAGCTTGCCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR CAA 90 bp CAGAACAATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATCTTGAGTAGACAGCGCTTCTCCCGCTaGCGCCATTTGGCCCTGCGG +
Preference number: 5 (lower is better)
Translates to: QNNALVWTVPFQQIILSRQRFSR*RHLALR
Trigger: CCGCAGGGCCAAATGGCGCAAGCGGGAGAAGCGCTG...TCTACTCAAGATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATTGTTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000429762.7
CDS-3UTR CAA 90 bp AAAGAACACACTGAACTTGGGAGACCAATGCTTTCAACTCCTAGGTTGTTGAATCCGCCCTCGGCGGAGTaGAGCACGGAGTCTGGCAGC +
Preference number: 5 (lower is better)
Translates to: KEHTELGRPMLSTPRLLNPPSAE*STESGS
Trigger: GCTGCCAGACTCCGTGCTCAACTCCGCCGAGGGCGG...ATTCAACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTTCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000429762.7
CDS-3UTR CAA 90 bp GGCATGCTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGTCAACTCCTAGGTTGTaGAATTCCTTGCACATGGGG +
Preference number: 5 (lower is better)
Translates to: GMLPEAEQCYLSTSPEGQSTPRL*NSLHMG
Trigger: CCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGA...CTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCATGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS CCA 90 bp GGACTGCTGATTGGCTCACTGAATGTGGGAATGACACGTTCTCTGTaGTATCTTTGGAGCGGAGAAAAGGGACCCCAGACACCTGTATCC +
Preference number: 5 (lower is better)
Translates to: GLLIGSLNVGMTRSL*YLWSGEKGPQTPVS
Trigger: GGATACAGGTGTCTGGGGTCCCTTTTCTCCGCTCCAAAGATACCACAGAGAACGTGTCATTCCCACATTCAGTGAGCCAATCAGCAGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS CCA 90 bp CCTCTCTGTGATCCTGACTCACTCTGGCTAGAACCTTCTTTGAAGTaGTCAGAGCCCCAGAGTCCTGCCAACTTATCTTCACTTCCTGGC +
Preference number: 5 (lower is better)
Translates to: PLCDPDSLWLEPSLK*SEPQSPANLSSLPG
Trigger: GCCAGGAAGTGAAGATAAGTTGGCAGGACTCTGGGGCTCTGACCACTTCAAAGAAGGTTCTAGCCAGAGTGAGTCAGGATCACAGAGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000376709.9
ENST00000557285.1
CDS-3UTR CAA 90 bp CAAGCTCTTGTGGTGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGTGCAAAGGGAGCGTGTaGGCTATAGAGAAGGGACTG +
Preference number: 5 (lower is better)
Translates to: QALVVPSAKGPSVSMQRECKGSV*AIEKGL
Trigger: CAGTCCCTTCTCTATAGCCAACACGCTCCCTTTGCA...CTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCACCACAAGAGCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS-3UTR CAA 90 bp GACCTAGCTGTCATGACTGCAGGTTTATTCTCATCAGCTGGTAATAGATACGGATCCAGGAGCAGAAGTTaGCACCAGGAGCCAGGGCGC +
Preference number: 5 (lower is better)
Translates to: DLAVMTAGLFSSAGNRYGSRSRS*HQEPGR
Trigger: GCGCCCTGGCTCCTGGTGCAAACTTCTGCTCCTGGA...TCCGTATCTATTACCAGCTGATGAGAATAAACCTGCAGTCATGACAGCTAGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS GCA 90 bp TCTCATCCATTTGACAATCGGCTTAGCAGGTTCACTTCATTTCTCTaGAGCCCAATGTCTCACCCTCTGTATCCGGTCTTCGGGGAGCTC +
Preference number: 5 (lower is better)
Translates to: SHPFDNRLSRFTSFL*SPMSHPLYPVFGEL
Trigger: GAGCTCCCCGAAGACCGGATACAGAGGGTGAGACATTGGGCTGCAGAGAAATGAAGTGAACCTGCTAAGCCGATTGTCAAATGGATGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000409958.6
CDS-3UTR CAA 90 bp GGCAAAGGAAACGCAGGAAAGGAAAGATTTACAAAATCCAAGTCACTAAAGTGCCGCCGCTTCTTCCTCTaGCCCAAGGTGGGGGATGCC +
Preference number: 5 (lower is better)
Translates to: GKGNAGKERFTKSKSLKCRRFFL*PKVGDA
Trigger: GGCATCCCCCACCTTGGGCAAGAGGAAGAAGCGGCG...GCACTTTAGTGACTTGGATTTTGTAAATCTTTCCTTTCCTGCGTTTCCTTTGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CAA 90 bp ATGAGGACATCAGACCTAACCTATTCATCTATACAGTACATTGAACCACACATCCAGCGCTTCTCCCGCTaGCGCCATTTGGCCCTGCGG +
Preference number: 5 (lower is better)
Translates to: MRTSDLTYSSIQYIEPHIQRFSR*RHLALR
Trigger: CCGCAGGGCCAAATGGCGCAAGCGGGAGAAGCGCTG...GATGTGTGGTTCAATGTACTGTATAGATGAATAGGTTAGGTCTGATGTCCTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CAA 90 bp AAATCATTTTTGAACTTCGGATCCTCCCTGCTCAAGCTACAAAAGAGAATCAAACCGCCCTCGGCGGAGTaGAGCACGGAGTCTGGCAGC +
Preference number: 5 (lower is better)
Translates to: KSFLNFGSSLLKLQKRIKPPSAE*STESGS
Trigger: GCTGCCAGACTCCGTGCTCAACTCCGCCGAGGGCGG...TTTGATTCTCTTTTGTAGCTTGAGCAGGGAGGATCCGAAGTTCAAAAATGATTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CAA 90 bp GCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGACTTTAGCAGCATTAAGGTTGTTGAATTCCTaGCACATGGGGTGCCCTGCA +
Preference number: 5 (lower is better)
Translates to: AEQCYLSTSPEGQTLAALRLLNS*HMGCPA
Trigger: TGCAGGGCACCCCATGTGCAAGGAATTCAACAACCT...TAATGCTGCTAAAGTCTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CAA 90 bp ATGCTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGACTTCAACTCCTAGGTTGTaGAATTCCTTGCACATGGGG +
Preference number: 5 (lower is better)
Translates to: MLPEAEQCYLSTSPEGQTSTPRL*NSLHMG
Trigger: CCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGA...AGTCTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CAA 90 bp CTGCAGGGGGCAAGTCTGGTAGCAGTGATCATCAAGGATGACACAGGAAAATCGATTTCAAAGCCCGGGTaGAGATCAGGGGTCAAAGAG +
Preference number: 5 (lower is better)
Translates to: LQGASLVAVIIKDDTGKSISKPG*RSGVKE
Trigger: CTCTTTGACCCCTGATCTCAACCCGGGCTTTGAAAT...CGATTTTCCTGTGTCATCCTTGATGATCACTGCTACCAGACTTGCCCCCTGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR CAA 90 bp CTGGTAGCAGTGATCATCAAGGATGACACAGGAAAATCGGCATGCTTCCTGAGGTCCAGGAGCAGAAGTTaGCACTGTATCCGGTCTTCG +
Preference number: 5 (lower is better)
Translates to: LVAVIIKDDTGKSACFLRSRSRS*HCIRSS
Trigger: CGAAGACCGGATACAGTGCAAACTTCTGCTCCTGGA...CCTCAGGAAGCATGCCGATTTTCCTGTGTCATCCTTGATGATCACTGCTACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000444511.6
CDS-3UTR CAA 90 bp AATGCCAGTGAGGAATATGCACATTTTCAGCCTTTGACAGTGGGACCTGTGGGTTGGCTAGAACCTTCTTaGAAGTGGTCAGAGCCCCAG +
Preference number: 5 (lower is better)
Translates to: NASEEYAHFQPLTVGPVGWLEPS*KWSEPQ
Trigger: CTGGGGCTCTGACCACTTCAAAGAAGGTTCTAGCCA...ACCCACAGGTCCCACTGTCAAAGGCTGAAAATGTGCATATTCCTCACTGGCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CAA 90 bp ATGAGGACATCAGACCTAACCTATTCATCTATACAGTACATTGAACCACACATCGGAGTTGGAGCCTCCTaGAGCACCAGCCCCAGGGTG +
Preference number: 5 (lower is better)
Translates to: MRTSDLTYSSIQYIEPHIGVGAS*STSPRV
Trigger: CACCCTGGGGCTGGTGCTCAAGGAGGCTCCAACTCC...GATGTGTGGTTCAATGTACTGTATAGATGAATAGGTTAGGTCTGATGTCCTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CAA 90 bp GCAAAGTCCAGTGAACGGGAGCCTCCAGGAGCAGAAGTTTGCACTCGTTCTTTATCCAGGAGCAGAAGTTaGCACTCGTTCTTTAAGGGT +
Preference number: 5 (lower is better)
Translates to: AKSSEREPPGAEVCTRSLSRSRS*HSFFKG
Trigger: ACCCTTAAAGAACGAGTGCAAACTTCTGCTCCTGGA...TAAAGAACGAGTGCAAACTTCTGCTCCTGGAGGCTCCCGTTCACTGGACTTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR CAA 90 bp GAACACACTGAACTTGGGAGACCAATGCTTTCAACTCCTAGGTTGTTGAATTCCGAAGGGCAGCCAGCCTaGGGGGAACTCTTAAGTTGG +
Preference number: 5 (lower is better)
Translates to: EHTELGRPMLSTPRLLNSEGQPA*GELLSW
Trigger: CCAACTTAAGAGTTCCCCCAAGGCTGGCTGCCCTTC...GGAATTCAACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000429762.7
CDS-3UTR CAA 90 bp ATGCTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGACTAAGAACACACTGAACTaGGGAGACCAATGCTTTCAA +
Preference number: 5 (lower is better)
Translates to: MLPEAEQCYLSTSPEGQTKNTLN*GDQCFQ
Trigger: TTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTTCTT...AGTCTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CAA 90 bp AAGGAGGGGAGTTTCTGTAAGAGCAGCTTTCTGCACCTGTCACTAGGACCTAGCTCAAGGCATTTTGGGTaGAGGAAGTCCAGAAAAGTC +
Preference number: 5 (lower is better)
Translates to: KEGSFCKSSFLHLSLGPSSRHFG*RKSRKV
Trigger: GACTTTTCTGGACTTCCTCAACCCAAAATGCCTTGA...GCTAGGTCCTAGTGACAGGTGCAGAAAGCTGCTCTTACAGAAACTCCCCTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CAA 90 bp AAATCATTTTTGAACTTCGGATCCTCCCTGCTCAAGCTACAAAAGAGAATCAAACCAGGGTGCACTTTCTaGGTCTCCTGCCGGGCAGAG +
Preference number: 5 (lower is better)
Translates to: KSFLNFGSSLLKLQKRIKPGCTF*VSCRAE
Trigger: CTCTGCCCGGCAGGAGACCAAGAAAGTGCACCCTGG...TTTGATTCTCTTTTGTAGCTTGAGCAGGGAGGATCCGAAGTTCAAAAATGATTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CAA 90 bp GAACACACTGAACTTGGGAGACCAATGCTTTCAACTCCTAGGTTGTTGAATTCCAGGTTGTTGAATTCCTaGCACATGGGGTGCCCTGCA +
Preference number: 5 (lower is better)
Translates to: EHTELGRPMLSTPRLLNSRLLNS*HMGCPA
Trigger: TGCAGGGCACCCCATGTGCAAGGAATTCAACAACCT...GGAATTCAACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CAA 90 bp GCAGTTCCGAGTGATAGACAAAGCCTCTTAATAAGGAGGGGAGTTTCTGTAAGAAGGTTGTTGAATTCCTaGCACATGGGGTGCCCTGCA +
Preference number: 5 (lower is better)
Translates to: AVPSDRQSLLIRRGVSVRRLLNS*HMGCPA
Trigger: TGCAGGGCACCCCATGTGCAAGGAATTCAACAACCT...TCTTACAGAAACTCCCCTCCTTATTAAGAGGCTTTGTCTATCACTCGGAACTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CAA 90 bp GCAAAGTCCAGTGAACGGGAGCCTCCAGGAGCAGAAGTTTGCACTCGTTCTTTACTTTCAACTCCTAGGTaGTTGAATTCCTTGCACATG +
Preference number: 5 (lower is better)
Translates to: AKSSEREPPGAEVCTRSLLSTPR*LNSLHM
Trigger: CATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAG...TAAAGAACGAGTGCAAACTTCTGCTCCTGGAGGCTCCCGTTCACTGGACTTTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR CAA 90 bp CTTCCTGAGGCAGAACAATGCTACCTGAGCACTTCTCCAGAGGGGCAGACTTTACTTTCAACTCCTAGGTaGTTGAATTCCTTGCACATG +
Preference number: 5 (lower is better)
Translates to: LPEAEQCYLSTSPEGQTLLSTPR*LNSLHM
Trigger: CATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAG...TAAAGTCTGCCCCTCTGGAGAAGTGCTCAGGTAGCATTGTTCTGCCTCAGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CAA 90 bp CACCTGTCACTAGGACCTAGCTGTCATGACTGCAGGTTTATTCTCATCAGCTGGAAGAACACACTGAACTaGGGAGACCAATGCTTTCAA +
Preference number: 5 (lower is better)
Translates to: HLSLGPSCHDCRFILISWKNTLN*GDQCFQ
Trigger: TTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTTCTT...CCAGCTGATGAGAATAAACCTGCAGTCATGACAGCTAGGTCCTAGTGACAGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CAA 90 bp GGGAGTTTCTGTAAGAGCAGCTTTCTGCACCTGTCACTAGGACCTAGCTGTCATAAGAACACACTGAACTaGGGAGACCAATGCTTTCAA +
Preference number: 5 (lower is better)
Translates to: GSFCKSSFLHLSLGPSCHKNTLN*GDQCFQ
Trigger: TTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTTCTT...ATGACAGCTAGGTCCTAGTGACAGGTGCAGAAAGCTGCTCTTACAGAAACTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CAA 90 bp ATCAAGGATGACACAGGAAAATCGGCATGCTTCCTGAGGCAGAACAATGCTACCTCAAGGCATTTTGGGTaGAGGAAGTCCAGAAAAGTC +
Preference number: 5 (lower is better)
Translates to: IKDDTGKSACFLRQNNATSRHFG*RKSRKV
Trigger: GACTTTTCTGGACTTCCTCAACCCAAAATGCCTTGA...GGTAGCATTGTTCTGCCTCAGGAAGCATGCCGATTTTCCTGTGTCATCCTTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CAA 90 bp AGTTTCTGTAAGAGCAGCTTTCTGCACCTGTCACTAGGACCTAGCTGTCATGACTCAAGGCATTTTGGGTaGAGGAAGTCCAGAAAAGTC +
Preference number: 5 (lower is better)
Translates to: SFCKSSFLHLSLGPSCHDSRHFG*RKSRKV
Trigger: GACTTTTCTGGACTTCCTCAACCCAAAATGCCTTGA...GTCATGACAGCTAGGTCCTAGTGACAGGTGCAGAAAGCTGCTCTTACAGAAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CAA 90 bp GAACTTGGGAGACCAATGCTTTCAACTCCTAGGTTGTTGAATTCCTTGCACATGTCAACTCCTAGGTTGTaGAATTCCTTGCACATGGGG +
Preference number: 5 (lower is better)
Translates to: ELGRPMLSTPRLLNSLHMSTPRL*NSLHMG
Trigger: CCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGA...CATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CAA 90 bp AATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATCTTGAGTAGAAGCAGTTCCAGGAGCAGAAGTTaGCACTCGTTCTTTAAGGGT +
Preference number: 5 (lower is better)
Translates to: NALVWTVPFQQIILSRSSSRSRS*HSFFKG
Trigger: ACCCTTAAAGAACGAGTGCAAACTTCTGCTCCTGGA...ACTGCTTCTACTCAAGATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6
CDS-3UTR CAA 90 bp GTAGAAGCAGTTCCGAGTGATAGACAAAGCCTCTTAATAAGGAGGGGAGTTTCTTCAAGGCATTTTGGGTaGAGGAAGTCCAGAAAAGTC +
Preference number: 5 (lower is better)
Translates to: VEAVPSDRQSLLIRRGVSSRHFG*RKSRKV
Trigger: GACTTTTCTGGACTTCCTCAACCCAAAATGCCTTGA...AGAAACTCCCCTCCTTATTAAGAGGCTTTGTCTATCACTCGGAACTGCTTCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CAA 90 bp AAATCATTTTTGAACTTCGGATCCTCCCTGCTCAAGCTACAAAAGAGAATCAAAGCACATTTTCAGCCTTaGACAGTGGGACCTGTGGGT +
Preference number: 5 (lower is better)
Translates to: KSFLNFGSSLLKLQKRIKAHFQP*TVGPVG
Trigger: ACCCACAGGTCCCACTGTCAAAGGCTGAAAATGTGC...TTTGATTCTCTTTTGTAGCTTGAGCAGGGAGGATCCGAAGTTCAAAAATGATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CAA 90 bp AAAGAACACACTGAACTTGGGAGACCAATGCTTTCAACTCCTAGGTTGTTGAATTCAACTCCTAGGTTGTaGAATTCCTTGCACATGGGG +
Preference number: 5 (lower is better)
Translates to: KEHTELGRPMLSTPRLLNSTPRL*NSLHMG
Trigger: CCCCATGTGCAAGGAATTCAACAACCTAGGAGTTGA...ATTCAACAACCTAGGAGTTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CAA 90 bp GAAGCAGTTCCGAGTGATAGACAAAGCCTCTTAATAAGGAGGGGAGTTTCTGTACTTTCAACTCCTAGGTaGTTGAATTCCTTGCACATG +
Preference number: 5 (lower is better)
Translates to: EAVPSDRQSLLIRRGVSVLSTPR*LNSLHM
Trigger: CATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAG...TACAGAAACTCCCCTCCTTATTAAGAGGCTTTGTCTATCACTCGGAACTGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CAA 90 bp GCAGTTCCGAGTGATAGACAAAGCCTCTTAATAAGGAGGGGAGTTTCTGTAAGACTTTCAACTCCTAGGTaGTTGAATTCCTTGCACATG +
Preference number: 5 (lower is better)
Translates to: AVPSDRQSLLIRRGVSVRLSTPR*LNSLHM
Trigger: CATGTGCAAGGAATTCAACAACCTAGGAGTTGAAAG...TCTTACAGAAACTCCCCTCCTTATTAAGAGGCTTTGTCTATCACTCGGAACTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CAA 90 bp AACAATGCCCTGGTATGGACAGTTCCCTTTCAACAGATAATCTTGAGTAGAAGCAAGAACACACTGAACTaGGGAGACCAATGCTTTCAA +
Preference number: 5 (lower is better)
Translates to: NNALVWTVPFQQIILSRSKNTLN*GDQCFQ
Trigger: TTGAAAGCATTGGTCTCCCAAGTTCAGTGTGTTCTT...GCTTCTACTCAAGATTATCTGTTGAAAGGGAACTGTCCATACCAGGGCATTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS-3UTR CAA 90 bp CCCAGCAGTGAAATCATTTTTGAACTTCGGATCCTCCCTGCTCAAGCTACAAAAAGAGTATGGGTTTCTTaGAATTCCAATATGCATAGC +
Preference number: 5 (lower is better)
Translates to: PSSEIIFELRILPAQATKRVWVS*NSNMHS
Trigger: GCTATGCATATTGGAATTCAAAGAAACCCATACTCT...TTTTGTAGCTTGAGCAGGGAGGATCCGAAGTTCAAAAATGATTTCACTGCTGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS-3UTR CAA 90 bp ATGAGGACATCAGACCTAACCTATTCATCTATACAGTACATTGAACCACACATCCATCTATACAGTACATaGAACCACACATCTCAAATG +
Preference number: 5 (lower is better)
Translates to: MRTSDLTYSSIQYIEPHIHLYST*NHTSQM
Trigger: CATTTGAGATGTGTGGTTCAATGTACTGTATAGATG...GATGTGTGGTTCAATGTACTGTATAGATGAATAGGTTAGGTCTGATGTCCTCAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS GCA 72 bp GGAGCCGTCAAGCCCCGGGCCCGGGCACGGCGCGACTaGCGGACCCTCGCAGCCAGATCCCTGTCCTGGGCC +
Preference number: 6 (lower is better)
Translates to: GAVKPRARARRD*RTLAARSLSWA
Trigger: GGCCCAGGACAGGGATCTGGCTGCGAGGGTCCGGCAGTCGCGCCGTGCCCGGGCCCGGGGCTTGACGGCTCC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000376707.4
ENST00000376709.9
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS CAA 72 bp GGCGCGCAGGAGCCCAGCAGGCCGCCCTCGGCGGAGTaGAGCACGGAGTCTGGCAGCGGGATGCAGTGGCGC +
Preference number: 6 (lower is better)
Translates to: GAQEPSRPPSAE*STESGSGMQWR
Trigger: GCGCCACTGCATCCCGCTGCCAGACTCCGTGCTCAACTCCGCCGAGGGCGGCCTGCTGGGCTCCTGCGCGCC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000376709.9
ENST00000409285.6
ENST00000429762.7
ENST00000557285.1
CDS TCA 72 bp GCGCGCAGGAGCCCAGCAGGCCGCCCTCGGCGGAGTTaGGCACGGAGTCTGGCAGCGGGATGCAGTGGCGCA +
Preference number: 6 (lower is better)
Translates to: ARRSPAGRPRRS*ARSLAAGCSGA
Trigger: TGCGCCACTGCATCCCGCTGCCAGACTCCGTGCTCAACTCCGCCGAGGGCGGCCTGCTGGGCTCCTGCGCGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000376709.9
ENST00000409285.6
ENST00000429762.7
ENST00000557285.1
CDS GCA 72 bp ACTGGCTGTCCTCATCGGACGTGGAGACGCTGTCGCTaGGCTTCTGGCGGCCGAGCGCAGGCGGCGGACGGC +
Preference number: 6 (lower is better)
Translates to: TGCPHRTWRRCR*ASGGRAQAADG
Trigger: GCCGTCCGCCGCCTGCGCTCGGCCGCCAGAAGCGCAGCGACAGCGTCTCCACGTCCGATGAGGACAGCCAGT
72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000376707.4
ENST00000376709.9
ENST00000409285.6
ENST00000409958.6
ENST00000429762.7
ENST00000444511.6
CDS CCA 72 bp GCACGGAGTCTGGCAGCGGGATGCAGTGGCGCACCATaGCCCCGTACAGCCCGTACTCGGCCATCACGCTGC +
Preference number: 6 (lower is better)
Translates to: ARSLAAGCSGAP*PRTARTRPSRC
Trigger: GCAGCGTGATGGCCGAGTACGGGCTGTACGGGGCCATGGTGCGCCACTGCATCCCGCTGCCAGACTCCGTGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000376709.9
ENST00000409285.6
ENST00000429762.7
ENST00000557285.1
CDS CAA 90 bp TGCCTTCAGCTAAGGGACCCTCAGTTTCTATGCAAAGGGAGCGTGTaGGCTATAGAGAAGGGACTGCTGATTGGCTCACTGAATGTGGGA +
Preference number: 6 (lower is better)
Translates to: CLQLRDPQFLCKGSV*AIEKGLLIGSLNVG
Trigger: TCCCACATTCAGTGAGCCAATCAGCAGTCCCTTCTCTATAGCCAACACGCTCCCTTTGCATAGAAACTGAGGGTCCCTTAGCTGAAGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS CAA 72 bp CTAAGGGACCCTCAGTTTCTATGCAAAGGGAGCGTGTaGGCTATAGAGAAGGGACTGCTGATTGGCTCACTG +
Preference number: 6 (lower is better)
Translates to: LRDPQFLCKGSV*AIEKGLLIGSL
Trigger: CAGTGAGCCAATCAGCAGTCCCTTCTCTATAGCCAACACGCTCCCTTTGCATAGAAACTGAGGGTCCCTTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS CAA 72 bp CTCTGTGATCCTGACTCACTCTGGCTAGAACCTTCTTaGAAGTGGTCAGAGCCCCAGAGTCCTGCCAACTTA +
Preference number: 6 (lower is better)
Translates to: LCDPDSLWLEPS*KWSEPQSPANL
Trigger: TAAGTTGGCAGGACTCTGGGGCTCTGACCACTTCAAAGAAGGTTCTAGCCAGAGTGAGTCAGGATCACAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000376709.9
ENST00000557285.1
CDS CAA 90 bp TCTGAGCCTCTCTGTGATCCTGACTCACTCTGGCTAGAACCTTCTTaGAAGTGGTCAGAGCCCCAGAGTCCTGCCAACTTATCTTCACTT +
Preference number: 6 (lower is better)
Translates to: SEPLCDPDSLWLEPS*KWSEPQSPANLSSL
Trigger: AAGTGAAGATAAGTTGGCAGGACTCTGGGGCTCTGACCACTTCAAAGAAGGTTCTAGCCAGAGTGAGTCAGGATCACAGAGAGGCTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000376709.9
ENST00000557285.1
CDS TCA 72 bp AAAATGCCAGTGAGGAATATGCACATTTTCAGCCTTTaGCAGTGGGACCTGTGGGTCTCATGTGGCTCCCAC +
Preference number: 6 (lower is better)
Translates to: KMPVRNMHIFSL*QWDLWVSCGSH
Trigger: GTGGGAGCCACATGAGACCCACAGGTCCCACTGTCAAAGGCTGAAAATGTGCATATTCCTCACTGGCATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS CCA 72 bp ATTGGCTCACTGAATGTGGGAATGACACGTTCTCTGTaGTATCTTTGGAGCGGAGAAAAGGGACCCCAGACA +
Preference number: 6 (lower is better)
Translates to: IGSLNVGMTRSL*YLWSGEKGPQT
Trigger: TGTCTGGGGTCCCTTTTCTCCGCTCCAAAGATACCACAGAGAACGTGTCATTCCCACATTCAGTGAGCCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000376707.4
CDS CAA 72 bp GAAAATGCCAGTGAGGAATATGCACATTTTCAGCCTTaGACAGTGGGACCTGTGGGTCTCATGTGGCTCCCA +
Preference number: 6 (lower is better)
Translates to: ENASEEYAHFQP*TVGPVGLMWLP
Trigger: TGGGAGCCACATGAGACCCACAGGTCCCACTGTCAAAGGCTGAAAATGTGCATATTCCTCACTGGCATTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000376709.9
CDS GCA 72 bp AGAACCTTCTTTGAAGTGGTCAGAGCCCCAGAGTCCTaGCAACTTATCTTCACTTCCTGGCTTCCTTATCAT +
Preference number: 6 (lower is better)
Translates to: RTFFEVVRAPES*QLIFTSWLPYH
Trigger: ATGATAAGGAAGCCAGGAAGTGAAGATAAGTTGGCAGGACTCTGGGGCTCTGACCACTTCAAAGAAGGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000376709.9
ENST00000557285.1
CDS CAA 90 bp TTTAAGGGTGTTTTCCCGATCCTTGGCTCTGAGTTTCTCATCCATTaGACAATCGGCTTAGCAGGTTCACTTCATTTCTCTGCAGCCCAA +
Preference number: 6 (lower is better)
Translates to: FKGVFPILGSEFLIH*TIGLAGSLHFSAAQ
Trigger: TTGGGCTGCAGAGAAATGAAGTGAACCTGCTAAGCCGATTGTCAAATGGATGAGAAACTCAGAGCCAAGGATCGGGAAAACACCCTTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000409285.6
ENST00000409958.6